primary_knowledge_sources
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16
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stringlengths 4
98
| predicate
stringclasses 91
values | object
stringlengths 4
124
| knowledge_level
stringclasses 5
values | agent_type
stringclasses 6
values | primary_knowledge_source
stringclasses 95
values | aggregator_knowledge_source
listlengths 0
2
| publications
listlengths 0
1.34k
| subject_aspect_qualifier
stringclasses 2
values | subject_direction_qualifier
stringclasses 1
value | object_aspect_qualifier
stringclasses 17
values | object_direction_qualifier
stringclasses 6
values | upstream_data_source
listlengths 1
3
| num_references
int32 | num_sentences
int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[
"infores:pathwhiz"
] |
PathWhiz:PW096073
|
biolink:occurs_in
|
NCBITaxon:7227
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:7531
|
biolink:interacts_with
|
NCBIGene:8361
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:diseases"
] |
NCBIGene:79969
|
biolink:gene_associated_with_condition
|
DOID:0050177
|
prediction
|
text_mining_agent
|
infores:diseases
|
[
"infores:rtx-kg2"
] |
[
"PMID:27512957",
"PMID:32033020",
"PMID:31498540",
"PMID:36250024",
"PMID:32881632",
"PMID:38129330",
"PMID:26585507",
"PMID:36359005",
"PMID:32774163",
"PMID:31080801",
"PMID:38064432",
"PMID:37124625",
"PMID:33672816",
"PMID:33260953",
"PMID:30774827",
"PMID:24113571",
"PMID:37190165",
"PMID:26463706",
"PMID:34909380",
"PMID:35406424"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:reactome"
] |
REACT:R-MMU-73912
|
biolink:has_output
|
CHEBI:15846
|
knowledge_assertion
|
manual_agent
|
infores:reactome
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:ensembl-gene"
] |
REACT:R-HSA-194315
|
biolink:has_participant
|
ENSEMBL:ENST00000515144
|
knowledge_assertion
|
automated_agent
|
infores:ensembl-gene
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:4360
|
biolink:expressed_in
|
UBERON:0001621
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:semmeddb"
] |
HP:0025464
|
biolink:produces
|
UMLS:C0024337
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:10858323",
"PMID:31185896",
"PMID:31476867"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0056173
|
biolink:interacts_with
|
UMLS:C0009502
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:1591883"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
SMPDB:SMP0061291
|
biolink:has_participant
|
PathWhiz.Reaction:55814
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
NCBIGene:8817
|
biolink:located_in
|
UMLS:C0819757
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:26773067"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:ubergraph"
] |
NCBITaxon:1126928
|
biolink:subclass_of
|
NCBITaxon:562
|
knowledge_assertion
|
manual_agent
|
infores:ubergraph
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0081939
|
biolink:preventative_for_condition
|
MONDO:0005311
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:19048083"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
SMPDB:SMP0005582
|
biolink:has_participant
|
CHEBI:17361
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:reactome"
] |
REACT:R-XTR-192312
|
biolink:has_input
|
CHEBI:57373
|
knowledge_assertion
|
manual_agent
|
infores:reactome
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
NCBIGene:51000
|
biolink:located_in
|
UMLS:C0086418
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:20011239"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:drugbank"
] |
UNII:1KUR4BN70F
|
biolink:interacts_with
|
UNII:724QD330RD
|
knowledge_assertion
|
manual_agent
|
infores:drugbank
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0036100
|
biolink:affects
|
NCIT:C3137
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:26779447"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pharos"
] |
CHEMBL.COMPOUND:CHEMBL2414678
|
biolink:affects
|
NCBIGene:8694
|
knowledge_assertion
|
manual_agent
|
infores:pharos
|
[
"infores:robokop-kg"
] |
[
"PMID:23871442"
] | null | null |
activity
|
decreased
|
[
"robokop"
] | null | null |
[
"infores:primekg"
] |
CHEBI:70707
|
biolink:directly_physically_interacts_with
|
CHEBI:135966
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:83985
|
biolink:expressed_in
|
UBERON:0000014
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:ensembl-gene"
] |
REACT:R-HSA-9006925
|
biolink:has_participant
|
ENSEMBL:ENST00000579147
|
knowledge_assertion
|
automated_agent
|
infores:ensembl-gene
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW026631
|
biolink:occurs_in
|
NCBITaxon:6239
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
NCBIGene:1892
|
biolink:coexpressed_with
|
NCBIGene:6217
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
MONDO:0007028
|
biolink:coexists_with
|
UMLS:C0043246
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:15891729",
"PMID:21454096",
"PMID:26564791",
"PMID:29713219",
"PMID:8675117"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:intact"
] |
NCBIGene:58190
|
biolink:physically_interacts_with
|
NCBIGene:55215
|
knowledge_assertion
|
manual_agent
|
infores:intact
|
[
"infores:rtx-kg2"
] |
[
"PMID:33961781"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:hetionet"
] |
NCBIGene:64080
|
biolink:actively_involved_in
|
GO:0044282
|
not_provided
|
not_provided
|
infores:hetionet
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:text-mining-provider-targeted"
] |
CHEBI:27504
|
biolink:treats_or_applied_or_studied_to_treat
|
MONDO:0005301
|
not_provided
|
text_mining_agent
|
infores:text-mining-provider-targeted
|
[
"infores:robokop-kg"
] |
[
"PMC:4852098",
"PMC:4852098",
"PMC:4852098"
] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:diseases"
] |
NCBIGene:5913
|
biolink:gene_associated_with_condition
|
MONDO:0005070
|
prediction
|
text_mining_agent
|
infores:diseases
|
[
"infores:rtx-kg2"
] |
[
"PMID:31033776",
"PMID:15286164",
"PMID:29655446",
"PMID:25796590",
"PMID:24218011",
"PMID:12796535",
"PMID:35815343",
"PMID:19688192",
"PMID:26789134",
"PMID:26843990",
"PMID:18626973",
"PMID:19520274",
"PMID:24580776",
"PMID:35942663",
"PMID:31900318",
"PMID:31161982",
"PMID:37646703",
"PMID:28846617",
"PMID:26870889",
"PMID:32818587"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:intact"
] |
NCBIGene:55237
|
biolink:directly_physically_interacts_with
|
NCBIGene:6299
|
not_provided
|
not_provided
|
infores:intact
|
[
"infores:robokop-kg"
] |
[
"PMID:33961781"
] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW014100
|
biolink:has_participant
|
CHEBI:15422
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:drugbank"
] |
UNII:26GIW6ZLPH
|
biolink:interacts_with
|
CHEBI:51038
|
knowledge_assertion
|
manual_agent
|
infores:drugbank
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0079904
|
biolink:affects
|
MESH:D008054
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:9352364"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:ubergraph"
] |
NCBITaxon:1638540
|
biolink:subclass_of
|
NCBITaxon:2619927
|
knowledge_assertion
|
manual_agent
|
infores:ubergraph
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
NCBIGene:5111
|
biolink:located_in
|
UMLS:C0043210
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:8095051"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
UniProtKB:O60566-1
|
biolink:coexpressed_with
|
UniProtKB:Q8NDV3-3
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:string"
] |
NCBIGene:10365
|
biolink:coexpressed_with
|
NCBIGene:167465
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
MONDO:0008304
|
biolink:coexists_with
|
MONDO:0009025
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:34461192"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C4763878
|
biolink:treats_or_applied_or_studied_to_treat
|
UMLS:C0457522
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:37122968"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UNII:Z633861EIM
|
biolink:located_in
|
UBERON:0001153
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:8297893",
"PMID:9868792"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:ncbi-taxonomy"
] |
NCBITaxon:293902
|
biolink:close_match
|
UMLS:C0328529
|
knowledge_assertion
|
manual_agent
|
infores:ncbi-taxonomy
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0005954
|
biolink:diagnoses
|
MONDO:0020596
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:2988115",
"PMID:7211812"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:1385
|
biolink:expressed_in
|
UBERON:0001828
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0871633
|
biolink:occurs_in
|
UMLS:C0851827
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:27631182",
"PMID:700347"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
NCBIGene:8936
|
biolink:coexpressed_with
|
UniProtKB:O00499-1
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW024043
|
biolink:occurs_in
|
GO:0005739
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0193438
|
biolink:treats_or_applied_or_studied_to_treat
|
UMLS:C0086418
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:26673494"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:intact"
] |
UniProtKB:P69901
|
biolink:directly_physically_interacts_with
|
NCBIGene:7112
|
not_provided
|
not_provided
|
infores:intact
|
[
"infores:robokop-kg"
] |
[
"PMID:22810586"
] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:8557
|
biolink:expressed_in
|
UBERON:0001043
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:ubergraph",
"infores:ncit"
] |
UMLS:C1514116
|
biolink:subclass_of
|
UMLS:C1510738
|
knowledge_assertion
|
manual_agent
|
infores:ncit
|
[
"infores:rtx-kg2",
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"rtxkg2",
"robokop"
] | null | null |
[
"infores:hmdb"
] |
PUBCHEM.COMPOUND:131756621
|
biolink:located_in
|
GO:0016020
|
knowledge_assertion
|
manual_agent
|
infores:hmdb
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:bindingdb"
] |
CHEBI:49662
|
biolink:related_to
|
NCBIGene:443551
|
knowledge_assertion
|
manual_agent
|
infores:bindingdb
|
[
"infores:robokop-kg"
] |
[
"PMID:17434872"
] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
GO:0048242
|
biolink:occurs_in
|
MONDO:0008233
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:4390418",
"PMID:7078309"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:mesh"
] |
UMLS:C1121764
|
biolink:related_to
|
CHEBI:8378
|
knowledge_assertion
|
manual_agent
|
infores:mesh
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:umls-metathesaurus"
] |
UMLS:C1509778
|
biolink:subclass_of
|
CHEBI:72695
|
knowledge_assertion
|
manual_agent
|
infores:umls-metathesaurus
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:ncbi-gene"
] |
NCBIGene:130063565
|
biolink:subclass_of
|
NCBITaxon:9606
|
knowledge_assertion
|
automated_agent
|
infores:ncbi-gene
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:chebi",
"infores:ubergraph"
] |
CHEBI:167734
|
biolink:subclass_of
|
CHEBI:48470
|
knowledge_assertion
|
manual_agent
|
infores:chebi
|
[
"infores:rtx-kg2",
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"rtxkg2",
"robokop"
] | null | null |
[
"infores:lincs"
] |
NCBIGene:50865
|
biolink:regulates
|
NCBIGene:93487
|
not_provided
|
not_provided
|
infores:lincs
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:string"
] |
NCBIGene:1553
|
biolink:coexpressed_with
|
UniProtKB:Q15067-2
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
MONDO:0005001
|
biolink:occurs_in
|
UMLS:C0995242
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:2628136"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:panther"
] |
PANTHER.FAMILY:PTHR12002:SF4
|
biolink:located_in
|
GO:0005911
|
not_provided
|
not_provided
|
infores:panther
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:ensembl-gene"
] |
REACT:R-HSA-5610787
|
biolink:has_participant
|
ENSEMBL:ENST00000689819
|
knowledge_assertion
|
automated_agent
|
infores:ensembl-gene
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:bindingdb"
] |
PUBCHEM.COMPOUND:121416528
|
biolink:affects
|
NCBIGene:5594
|
knowledge_assertion
|
manual_agent
|
infores:bindingdb
|
[
"infores:robokop-kg"
] |
[] | null | null |
activity
|
decreased
|
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
MONDO:0005638
|
biolink:coexists_with
|
UMLS:C0750919
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:33207242"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:hmdb"
] |
SMPDB:SMP0048449
|
biolink:has_participant
|
PUBCHEM.COMPOUND:131823284
|
knowledge_assertion
|
manual_agent
|
infores:hmdb
|
[
"infores:rtx-kg2",
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"rtxkg2",
"robokop"
] | null | null |
[
"infores:hmdb"
] |
PUBCHEM.COMPOUND:131757005
|
biolink:related_to
|
NCBIGene:8513
|
knowledge_assertion
|
manual_agent
|
infores:hmdb
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
SMPDB:SMP0049092
|
biolink:occurs_in
|
GO:0005620
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:hmdb"
] |
PUBCHEM.COMPOUND:131763261
|
biolink:affects
|
NCBIGene:1376
|
knowledge_assertion
|
manual_agent
|
infores:hmdb
|
[
"infores:robokop-kg"
] |
[] | null | null |
abundance
| null |
[
"robokop"
] | null | null |
[
"infores:mesh"
] |
MESH:C105933
|
biolink:related_to
|
CHEBI:15746
|
knowledge_assertion
|
manual_agent
|
infores:mesh
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
NCBIGene:136895
|
biolink:coexpressed_with
|
UniProtKB:Q66GS9-1
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:text-mining-provider-targeted"
] |
CHEBI:4806
|
biolink:affects
|
NCBIGene:4915
|
not_provided
|
text_mining_agent
|
infores:text-mining-provider-targeted
|
[
"infores:robokop-kg"
] |
[
"PMC:9332553",
"PMID:26514400",
"PMID:26514400",
"PMC:7336207",
"PMID:26514400"
] | null | null |
activity_or_abundance
|
increased
|
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
NCBIGene:2261
|
biolink:located_in
|
UBERON:0000988
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:8579357"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:drugbank"
] |
CHEBI:114785
|
biolink:interacts_with
|
CHEBI:71272
|
knowledge_assertion
|
manual_agent
|
infores:drugbank
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:93974
|
biolink:interacts_with
|
NCBIGene:515
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:go-plus",
"infores:chebi",
"infores:ubergraph"
] |
CHEBI:78190
|
biolink:subclass_of
|
CHEBI:50998
|
knowledge_assertion
|
manual_agent
|
infores:chebi
|
[
"infores:rtx-kg2",
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"rtxkg2",
"robokop"
] | null | null |
[
"infores:string"
] |
UniProtKB:Q14565-1
|
biolink:coexpressed_with
|
NCBIGene:11128
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0850293
|
biolink:related_to
|
UMLS:C0277785
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:21665327"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW019962
|
biolink:has_participant
|
CHEBI:18367
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pr"
] |
PR:000062297
|
biolink:has_part
|
MOD:00039
|
knowledge_assertion
|
manual_validation_of_automated_agent
|
infores:pr
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0043251
|
biolink:causes
|
MONDO:0016047
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:10168892",
"PMID:1575244",
"PMID:17452189",
"PMID:18317341",
"PMID:19050669",
"PMID:1945312",
"PMID:23138998",
"PMID:24661397",
"PMID:2622617",
"PMID:27067874",
"PMID:27958225",
"PMID:29998884",
"PMID:3103191",
"PMID:31732711",
"PMID:32808064",
"PMID:33281014",
"PMID:34620485",
"PMID:3495766",
"PMID:35855625",
"PMID:36714353"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:drugbank"
] |
UNII:0IEO0F56LV
|
biolink:interacts_with
|
CHEBI:3507
|
knowledge_assertion
|
manual_agent
|
infores:drugbank
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW020453
|
biolink:occurs_in
|
NCBITaxon:3702
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
CHEBI:90724
|
biolink:affects
|
UMLS:C0526470
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:17727733"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
MONDO:0016047
|
biolink:coexists_with
|
UMLS:C0700285
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:2179136"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:go"
] |
GO:0045624
|
biolink:close_match
|
UMLS:C2249287
|
knowledge_assertion
|
manual_agent
|
infores:go
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:semmeddb"
] |
UMLS:C0087111
|
biolink:has_input
|
CHEBI:94557
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:13528372",
"PMID:22722379",
"PMID:28249630"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
UniProtKB:Q9HCS2-1
|
biolink:coexpressed_with
|
UniProtKB:A6NE52-1
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:umls-metathesaurus",
"infores:semmeddb"
] |
CHEBI:34698
|
biolink:related_to
|
CHEBI:17747
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:23860597"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:ubergraph"
] |
NCBITaxon:741440
|
biolink:subclass_of
|
NCBITaxon:695615
|
knowledge_assertion
|
manual_agent
|
infores:ubergraph
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:medlineplus"
] |
MONDO:0005066
|
biolink:related_to
|
MONDO:0000816
|
knowledge_assertion
|
manual_agent
|
infores:medlineplus
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:pathwhiz"
] |
PathWhiz:PW033879
|
biolink:has_participant
|
NCBIGene:10554
|
prediction
|
automated_agent
|
infores:pathwhiz
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
UBERON:0001873
|
biolink:expressed_in
|
NCBIGene:1915
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:primekg"
] |
UBERON:0002129
|
biolink:expressed_in
|
NCBIGene:55131
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:semmeddb"
] |
CL:0000127
|
biolink:produces
|
CHEBI:26523
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:10415427",
"PMID:10926373",
"PMID:15386527",
"PMID:15804435",
"PMID:17504946",
"PMID:18386021",
"PMID:18590917",
"PMID:19309263",
"PMID:19459161",
"PMID:20976166",
"PMID:22339795",
"PMID:22579772",
"PMID:23401228",
"PMID:23469836",
"PMID:23918204",
"PMID:24598861",
"PMID:24836201",
"PMID:26454173",
"PMID:27473515",
"PMID:27799543"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:diseases"
] |
NCBIGene:64407
|
biolink:gene_associated_with_condition
|
MONDO:0005027
|
prediction
|
text_mining_agent
|
infores:diseases
|
[
"infores:rtx-kg2"
] |
[
"PMID:23529717",
"PMID:26811058",
"PMID:32370294",
"PMID:38181259",
"PMID:36555521",
"PMID:31631359",
"PMID:33374212",
"PMID:25768299",
"PMID:33008920",
"PMID:21246034",
"PMID:26512886",
"PMID:37674228",
"PMID:23712359",
"PMID:32848832",
"PMID:21130872",
"PMID:22045784",
"PMID:19703021",
"PMID:38169731",
"PMID:34131117",
"PMID:38097805"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:drugbank"
] |
CHEBI:9137
|
biolink:interacts_with
|
CHEBI:81569
|
knowledge_assertion
|
manual_agent
|
infores:drugbank
|
[
"infores:rtx-kg2"
] |
[] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:string"
] |
UniProtKB:Q8N2K1-3
|
biolink:coexpressed_with
|
NCBIGene:11285
|
knowledge_assertion
|
manual_agent
|
infores:string
|
[
"infores:robokop-kg"
] |
[] | null | null | null | null |
[
"robokop"
] | null | null |
[
"infores:semmeddb"
] |
CHEBI:7507
|
biolink:affects
|
UMLS:C0040649
|
prediction
|
text_mining_agent
|
infores:semmeddb
|
[
"infores:rtx-kg2"
] |
[
"PMID:12564119"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:intact"
] |
NCBIGene:363
|
biolink:physically_interacts_with
|
NCBIGene:83460
|
knowledge_assertion
|
manual_agent
|
infores:intact
|
[
"infores:rtx-kg2"
] |
[
"PMID:32296183"
] | null | null | null | null |
[
"rtxkg2"
] | null | null |
[
"infores:primekg"
] |
NCBIGene:10775
|
biolink:expressed_in
|
UBERON:0001893
|
knowledge_assertion
|
not_provided
|
infores:primekg
|
[] |
[] | null | null | null | null |
[
"primekg"
] | null | null |
[
"infores:intact"
] |
NCBIGene:936303
|
biolink:directly_physically_interacts_with
|
NCBIGene:939948
|
not_provided
|
not_provided
|
infores:intact
|
[
"infores:robokop-kg"
] |
[
"PMID:21630458"
] | null | null | null | null |
[
"robokop"
] | null | null |
End of preview. Expand
in Data Studio
Dataset Card for Every Cure Integrated Knowledge Graph (Edges)
Dataset Summary
The Every Cure KG is currently (as of February 2026) essentially an integrated, simplified and filtered merged KG comprising ROBOKOP and RTX-KG2.
The "Edges" dataset contains the records for all edges in the graph, including metadata.
See nodes dataset for the corresponding set of nodes.
Source Data
Licensing Information
See LICENSE for details.
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