README.md

metadata

pretty_name: Deformabiltiy Cytometry
license: cc-by-nc-4.0
task_categories:
  - image-segmentation
language:
  - en
size_categories:
  - 10K<n<100K
configs:
  - config_name: metadata
    data_files:
      - split: train
        path: metadata.parquet
dataset_info:
  features:
    - name: cell_line
      dtype: string
    - name: file
      dtype: string
    - name: split
      dtype: string
    - name: frame_idx
      dtype: int64
    - name: index
      dtype: int64
    - name: timestampNs
      dtype: int64
    - name: deformability
      dtype: float64
    - name: area
      dtype: float64
    - name: areaRatio
      dtype: float64
    - name: ringRatio
      dtype: float64
    - name: isValid
      dtype: uint8
    - name: touchesBorder
      dtype: uint8
    - name: hasSingleInnerContour
      dtype: uint8
    - name: inRange
      dtype: uint8
    - name: innerContourCount
      dtype: int32
    - name: brightness_q1
      dtype: float64
    - name: brightness_q2
      dtype: float64
    - name: brightness_q3
      dtype: float64
    - name: brightness_q4
      dtype: float64

20260331_cells

Cell image dataset in HDF5 format with per-frame masks and metadata.

Layout

Each .h5 file contains:

• /experiment_info/background: (1, 96, 512) uint8
• /valid_frames/images: (N, 96, 512) uint8
• /valid_frames/masks: (N, 96, 512) uint8
• /valid_frames/metadata: structured table
• /invalid_frames/images: (M, 96, 512) uint8
• /invalid_frames/masks: (M, 96, 512) uint8
• /invalid_frames/metadata: structured table

Metadata fields: index, timestampNs, deformability, area, areaRatio, ringRatio, isValid, touchesBorder, hasSingleInnerContour, inRange, innerContourCount, brightness_q1, brightness_q2, brightness_q3, brightness_q4

Notes

• valid_frames/metadata.isValid = 1
• invalid_frames/metadata.isValid = 0
• Some invalid-frame ringRatio values may be NaN.

License and Usage

This dataset is released under Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0).

• Commercial use is not permitted.
• Any use must include acknowledgment/citation of the dataset creators.

Files

See manifest.csv for per-file size and frame counts.

metadata.parquet provides frame-level metadata for Data Studio filtering/search.