| --- |
| pretty_name: Deformabiltiy Cytometry |
| license: cc-by-nc-4.0 |
| task_categories: |
| - image-segmentation |
| language: |
| - en |
| size_categories: |
| - 10K<n<100K |
| configs: |
| - config_name: metadata |
| data_files: |
| - split: train |
| path: metadata.parquet |
| dataset_info: |
| features: |
| - name: cell_line |
| dtype: string |
| - name: file |
| dtype: string |
| - name: split |
| dtype: string |
| - name: frame_idx |
| dtype: int64 |
| - name: index |
| dtype: int64 |
| - name: timestampNs |
| dtype: int64 |
| - name: deformability |
| dtype: float64 |
| - name: area |
| dtype: float64 |
| - name: areaRatio |
| dtype: float64 |
| - name: ringRatio |
| dtype: float64 |
| - name: isValid |
| dtype: uint8 |
| - name: touchesBorder |
| dtype: uint8 |
| - name: hasSingleInnerContour |
| dtype: uint8 |
| - name: inRange |
| dtype: uint8 |
| - name: innerContourCount |
| dtype: int32 |
| - name: brightness_q1 |
| dtype: float64 |
| - name: brightness_q2 |
| dtype: float64 |
| - name: brightness_q3 |
| dtype: float64 |
| - name: brightness_q4 |
| dtype: float64 |
| --- |
| |
| # 20260331_cells |
| |
| Cell image dataset in HDF5 format with per-frame masks and metadata. |
| |
| ## Layout |
| |
| Each `.h5` file contains: |
| |
| - `/experiment_info/background`: `(1, 96, 512)` `uint8` |
| - `/valid_frames/images`: `(N, 96, 512)` `uint8` |
| - `/valid_frames/masks`: `(N, 96, 512)` `uint8` |
| - `/valid_frames/metadata`: structured table |
| - `/invalid_frames/images`: `(M, 96, 512)` `uint8` |
| - `/invalid_frames/masks`: `(M, 96, 512)` `uint8` |
| - `/invalid_frames/metadata`: structured table |
|
|
| Metadata fields: |
| `index, timestampNs, deformability, area, areaRatio, ringRatio, isValid, touchesBorder, hasSingleInnerContour, inRange, innerContourCount, brightness_q1, brightness_q2, brightness_q3, brightness_q4` |
|
|
| ## Notes |
|
|
| - `valid_frames/metadata.isValid = 1` |
| - `invalid_frames/metadata.isValid = 0` |
| - Some invalid-frame `ringRatio` values may be `NaN`. |
|
|
| ## License and Usage |
|
|
| This dataset is released under **Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)**. |
|
|
| - Commercial use is not permitted. |
| - Any use must include acknowledgment/citation of the dataset creators. |
|
|
| ## Files |
|
|
| See `manifest.csv` for per-file size and frame counts. |
|
|
| `metadata.parquet` provides frame-level metadata for Data Studio filtering/search. |
