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def transform ( self , y ) : """Transform features per specified math function . : param y : : return :"""
if isinstance ( y , pd . DataFrame ) : x = y . ix [ : , 0 ] y = y . ix [ : , 1 ] else : x = y [ : , 0 ] y = y [ : , 1 ] if self . transform_type == 'add' : return pd . DataFrame ( np . add ( x , y ) ) elif self . transform_type == 'sub' : return pd . DataFrame ( np . subtract ( x , y ) ) elif se...
def get_full_delta_pal ( PTRMS , PTRM_Checks , NRM , y_err , y_mean , b , start , end , y_segment ) : """input : PTRMS , PTRM _ Checks , NRM , y _ err , y _ mean , b , start , end , y _ segment runs full sequence necessary to get delta _ pal"""
# print " - - - - - " # print " calling get _ full _ delta _ pal in lib " # return 0 PTRMS_cart , checks , TRM_1 = get_delta_pal_vectors ( PTRMS , PTRM_Checks , NRM ) # print " PTRMS _ Cart " , PTRMS _ cart diffs , C = get_diffs ( PTRMS_cart , checks , PTRMS , PTRM_Checks ) # print " C " , C TRM_star , x_star = get_TRM...
def skew_y ( self , y ) : """Skew element along the y - axis by the given angle . Parameters y : float y - axis skew angle in degrees"""
self . root . set ( "transform" , "%s skewY(%f)" % ( self . root . get ( "transform" ) or '' , y ) ) return self
def liftover_cpra ( self , chromosome , position , verbose = False ) : """Given chromosome , position in 1 - based co - ordinates , This will use pyliftover to liftover a CPRA , will return a ( c , p ) tuple or raise NonUniqueLiftover if no unique and strand maintaining liftover is possible : param chromosome...
chromosome = str ( chromosome ) position = int ( position ) # Perform the liftover lookup , shift the position by 1 as pyliftover deals in 0 - based co - ords new = self . liftover . convert_coordinate ( chromosome , position - 1 ) # This has to be here as new will be NoneType when the chromosome doesn ' t exist in the...
def create_from_tuple ( cls , tube , the_tuple ) : """Create task from tuple . Returns ` Task ` instance ."""
if the_tuple is None : return if not the_tuple . rowcount : raise Queue . ZeroTupleException ( "Error creating task" ) row = the_tuple [ 0 ] return cls ( tube , task_id = row [ 0 ] , state = row [ 1 ] , data = row [ 2 ] )
def _make_request ( self , opener , request , timeout = None ) : """Make the API call and return the response . This is separated into it ' s own function , so we can mock it easily for testing . : param opener : : type opener : : param request : url payload to request : type request : urllib . Request ob...
timeout = timeout or self . timeout try : return opener . open ( request , timeout = timeout ) except HTTPError as err : exc = handle_error ( err ) exc . __cause__ = None raise exc
def _index_fs ( self ) : """Returns a deque object full of local file system items . : returns : ` ` deque ` `"""
indexed_objects = self . _return_deque ( ) directory = self . job_args . get ( 'directory' ) if directory : indexed_objects = self . _return_deque ( deque = indexed_objects , item = self . _drectory_local_files ( directory = directory ) ) object_names = self . job_args . get ( 'object' ) if object_names : index...
def _resources ( p ) : """Callback func to display provider resources"""
if p . resources : click . echo ( "," . join ( p . resources ) ) else : click . echo ( f"Provider '{p.name}' does not have resource helpers" )
def lost_passwd ( self , data ) : """Send a reset link to user to recover its password"""
error = False msg = "" # Check input format email_re = re . compile ( r"(^[-!#$%&'*+/=?^_`{}|~0-9A-Z]+(\.[-!#$%&'*+/=?^_`{}|~0-9A-Z]+)*" # dot - atom r'|^"([\001-\010\013\014\016-\037!#-\[\]-\177]|\\[\001-011\013\014\016-\177])*"' # quoted - string r')@(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+[A-Z]{2,6}\.?$' , re . I...
def load_yaml_file ( file_path : str ) : """Load a YAML file from path"""
with codecs . open ( file_path , 'r' ) as f : return yaml . safe_load ( f )
def _write_init_models ( self , filenames ) : """Write init file Args : filenames ( dict ) : dict of filename and classes"""
self . write ( destination = self . output_directory , filename = "__init__.py" , template_name = "__init_model__.py.tpl" , filenames = self . _prepare_filenames ( filenames ) , class_prefix = self . _class_prefix , product_accronym = self . _product_accronym , header = self . header_content )
def set_cookie ( self , name , value , secret = None , digestmod = hashlib . sha256 , ** options ) : """Create a new cookie or replace an old one . If the ` secret ` parameter is set , create a ` Signed Cookie ` ( described below ) . : param name : the name of the cookie . : param value : the value of the coo...
if not self . _cookies : self . _cookies = SimpleCookie ( ) # To add " SameSite " cookie support . Morsel . _reserved [ 'same-site' ] = 'SameSite' if secret : if not isinstance ( value , basestring ) : depr ( 0 , 13 , "Pickling of arbitrary objects into cookies is " "deprecated." , "Only store strings i...
def holiday_day ( self , value = None ) : """Corresponds to IDD Field ` holiday _ day ` Args : value ( str ) : value for IDD Field ` holiday _ day ` if ` value ` is None it will not be checked against the specification and is assumed to be a missing value Raises : ValueError : if ` value ` is not a vali...
if value is not None : try : value = str ( value ) except ValueError : raise ValueError ( 'value {} need to be of type str ' 'for field `holiday_day`' . format ( value ) ) if ',' in value : raise ValueError ( 'value should not contain a comma ' 'for field `holiday_day`' ) self . _hol...
def new_metric ( name , class_ , * args , ** kwargs ) : """Create a new metric of the given class . Raise DuplicateMetricError if the given name has been already registered before Internal function - use " new _ < type > instead " """
with LOCK : try : item = REGISTRY [ name ] except KeyError : item = REGISTRY [ name ] = class_ ( * args , ** kwargs ) return item raise DuplicateMetricError ( "Metric {} already exists of type {}" . format ( name , type ( item ) . __name__ ) )
def get_custom_view_details ( name , auth , url ) : """function requires no input and returns a list of dictionaries of custom views from an HPE IMC . Optional name argument will return only the specified view . : param name : str containing the name of the desired custom view : param auth : requests auth obj...
view_id = get_custom_views ( auth , url , name = name ) [ 0 ] [ 'symbolId' ] get_custom_view_details_url = '/imcrs/plat/res/view/custom/' + str ( view_id ) f_url = url + get_custom_view_details_url r = requests . get ( f_url , auth = auth , headers = HEADERS ) # creates the URL using the payload variable as the content...
def _parse_dates ( self , prop = DATES ) : """Creates and returns a Date Types data structure parsed from the metadata"""
return parse_dates ( self . _xml_tree , self . _data_structures [ prop ] )
def _get_session ( self ) : """Create session as needed . . . note : : Caller is responsible for cleaning up the session after all partitions have been processed ."""
if self . _session is None : session = self . _session = self . _database . session ( ) session . create ( ) return self . _session
def attempt_connection ( self ) : """Establish a multicast connection - uses 2 sockets ( one for sending , the other for receiving )"""
self . socket = socket . socket ( socket . AF_INET , socket . SOCK_DGRAM , socket . IPPROTO_UDP ) self . socket . setsockopt ( socket . IPPROTO_IP , socket . IP_MULTICAST_TTL , 2 ) self . receiver_socket = socket . socket ( socket . AF_INET , socket . SOCK_DGRAM , socket . IPPROTO_UDP ) self . receiver_socket . setsock...
def _next_lowest_integer ( group_keys ) : """returns the lowest available integer in a set of dict keys"""
try : # TODO Replace with max default value when dropping compatibility with Python < 3.4 largest_int = max ( [ int ( val ) for val in group_keys if _is_int ( val ) ] ) except : largest_int = 0 return largest_int + 1
def ConfigSectionMap ( Config , section ) : """Read a specific section from a ConfigParser ( ) object and return a dict ( ) of all key - value pairs in that section"""
cfg = { } options = Config . options ( section ) for option in options : try : cfg [ option ] = Config . get ( section , option ) if cfg [ option ] == - 1 : logging . debug ( "skip: {0}" . format ( option ) ) except : logging . debug ( "exception on {0}!" . format ( option ) ...
def me ( access_code : str ) -> tuple : """Connect to a google account and get all personal info ( profile and the primary email ) ."""
auth_info = login ( access_code ) headers = HEADERS . copy ( ) headers [ "Authorization" ] = "Bearer {}" . format ( auth_info . access_token ) user = get_user_profile ( headers = headers ) # emails = get _ user _ emails ( headers = headers ) # primary _ email = next ( filter ( lambda x : x . is _ primary , emails ) ) #...
def merge_dicts ( * args ) : r"""add / concatenate / union / join / merge / combine dictionaries Copies the first dictionary given and then repeatedly calls update using the rest of the dicts given in args . Duplicate keys will receive the last value specified the list of dictionaries . Returns : dict : m...
iter_ = iter ( args ) mergedict_ = six . next ( iter_ ) . copy ( ) for dict_ in iter_ : mergedict_ . update ( dict_ ) return mergedict_
def write ( self , outfile ) : """Write the livetime cube to a FITS file ."""
hdu_pri = fits . PrimaryHDU ( ) hdu_exp = self . _create_exp_hdu ( self . data ) hdu_exp . name = 'EXPOSURE' hdu_exp_wt = self . _create_exp_hdu ( self . _data_wt ) hdu_exp_wt . name = 'WEIGHTED_EXPOSURE' cols = [ Column ( name = 'CTHETA_MIN' , dtype = 'f4' , data = self . costh_edges [ : - 1 ] [ : : - 1 ] ) , Column (...
def edit ( self , name , mark = False ) : """Edit this file or directory : param str name : new name for this entry : param bool mark : whether to bookmark this entry"""
self . api . edit ( self , name , mark )
def getRequiredNodes ( self ) : """Returns a dict from node shape to number of nodes required to run the packed jobs ."""
return { nodeShape : len ( self . nodeReservations [ nodeShape ] ) for nodeShape in self . nodeShapes }
def check_requirements ( dist , attr , value ) : """Verify that install _ requires is a valid requirements list"""
try : list ( pkg_resources . parse_requirements ( value ) ) except ( TypeError , ValueError ) : raise DistutilsSetupError ( "%r must be a string or list of strings " "containing valid project/version requirement specifiers" % ( attr , ) )
def commit_input_confirmed ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) commit = ET . Element ( "commit" ) config = commit input = ET . SubElement ( commit , "input" ) confirmed = ET . SubElement ( input , "confirmed" ) callback = kwargs . pop ( 'callback' , self . _callback ) return callback ( config )
def _get_baremetal_switch_info ( self , link_info ) : """Get switch _ info dictionary from context ."""
try : switch_info = link_info [ 'switch_info' ] if not isinstance ( switch_info , dict ) : switch_info = jsonutils . loads ( switch_info ) except Exception as e : LOG . error ( "switch_info can't be decoded: %(exp)s" , { "exp" : e } ) switch_info = { } return switch_info
def setup_logging ( ) : """Sets up the internal logging mechanism , i . e . , it creates the : py : attr : ` console _ handler ` , sets its formatting , and mounts on on the main ` ` " law " ` ` logger . It also sets the levels of all loggers that are given in the law config ."""
global console_handler # make sure logging is setup only once if console_handler : return # set the handler of the law root logger console_handler = logging . StreamHandler ( ) console_handler . setFormatter ( LogFormatter ( ) ) logging . getLogger ( "law" ) . addHandler ( console_handler ) # set levels for all log...
def _AssTuple ( self , t ) : """Tuple on left hand side of an expression ."""
# _ write each elements , separated by a comma . for element in t . nodes [ : - 1 ] : self . _dispatch ( element ) self . _write ( ", " ) # Handle the last one without writing comma last_element = t . nodes [ - 1 ] self . _dispatch ( last_element )
def _warn_about_problematic_credentials ( credentials ) : """Determines if the credentials are problematic . Credentials from the Cloud SDK that are associated with Cloud SDK ' s project are problematic because they may not have APIs enabled and have limited quota . If this is the case , warn about it ."""
from google . auth import _cloud_sdk if credentials . client_id == _cloud_sdk . CLOUD_SDK_CLIENT_ID : warnings . warn ( _CLOUD_SDK_CREDENTIALS_WARNING )
def dump ( d , fmt = 'json' , stream = None ) : """Serialize structured data into a stream in JSON , YAML , or LHA format . If stream is None , return the produced string instead . Parameters : - fmt : should be ' json ' ( default ) , ' yaml ' , or ' lha ' - stream : if None , return string"""
if fmt == 'json' : return _dump_json ( d , stream = stream ) elif fmt == 'yaml' : return yaml . dump ( d , stream ) elif fmt == 'lha' : s = _dump_lha ( d ) if stream is None : return s else : return stream . write ( s )
def update ( self , labels , preds , masks = None ) : # pylint : disable = arguments - differ """Updates the internal evaluation result . Parameters labels : list of ` NDArray ` The labels of the data with class indices as values , one per sample . preds : list of ` NDArray ` Prediction values for samples...
labels , preds = check_label_shapes ( labels , preds , True ) masks = [ None ] * len ( labels ) if masks is None else masks for label , pred_label , mask in zip ( labels , preds , masks ) : if pred_label . shape != label . shape : # TODO ( haibin ) topk does not support fp16 . Issue tracked at : # https : / / g...
def gene_panel ( self , ax , feature ) : """Plots gene models on an Axes . Queries the database : param ax : matplotlib . Axes object : param feature : pybedtools . Interval"""
from gffutils . contrib . plotting import Gene extent = [ feature . start , feature . stop ] nearby_genes = self . db . region ( ( feature . chrom , feature . start , feature . stop ) , featuretype = 'gene' ) ybase = 0 ngenes = 0 for nearby_gene in nearby_genes : ngenes += 1 extent . extend ( [ nearby_gene . st...
def add_ClientData ( self ) : """The user may type in : GET / HTTP / 1.1 \r \n Host : testserver . com \r \n \r \n Special characters are handled so that it becomes a valid HTTP request ."""
if not self . data_to_send : data = six . moves . input ( ) . replace ( '\\r' , '\r' ) . replace ( '\\n' , '\n' ) . encode ( ) # noqa : E501 else : data = self . data_to_send . pop ( ) if data == b"quit" : return if self . linebreak : data += b"\n" self . add_record ( ) self . add_msg ( TLSApplicati...
def download_mission ( ) : """Downloads the current mission and returns it in a list . It is used in save _ mission ( ) to get the file information to save ."""
print ( " Download mission from vehicle" ) missionlist = [ ] cmds = vehicle . commands cmds . download ( ) cmds . wait_ready ( ) for cmd in cmds : missionlist . append ( cmd ) return missionlist
def _handleDecodeHextileSubrectsColoured ( self , block , bg , color , subrects , x , y , width , height , tx , ty , tw , th ) : """subrects with their own color"""
sz = self . bypp + 2 pos = 0 end = len ( block ) while pos < end : pos2 = pos + self . bypp color = block [ pos : pos2 ] xy = ord ( block [ pos2 ] ) wh = ord ( block [ pos2 + 1 ] ) sx = xy >> 4 sy = xy & 0xf sw = ( wh >> 4 ) + 1 sh = ( wh & 0xf ) + 1 self . fillRectangle ( tx + sx , ...
def bbox_str ( bbox , pad = 4 , sep = ', ' ) : r"""makes a string from an integer bounding box"""
if bbox is None : return 'None' fmtstr = sep . join ( [ '%' + six . text_type ( pad ) + 'd' ] * 4 ) return '(' + fmtstr % tuple ( bbox ) + ')'
def xoscmounts ( host_mount ) : """Cross OS compatible mount dirs"""
callback_lower_drive_letter = lambda pat : pat . group ( 1 ) . lower ( ) host_mount = re . sub ( r"^([a-zA-Z])\:" , callback_lower_drive_letter , host_mount ) host_mount = re . sub ( r"^([a-z])" , "//\\1" , host_mount ) host_mount = re . sub ( r"\\" , "/" , host_mount ) return host_mount
def steps ( self , start , end ) : """Get the maximum number of steps the driver needs for a transition . : param start : The start value as uniform pwm value ( 0.0-1.0 ) . : param end : The end value as uniform pwm value ( 0.0-1.0 ) . : return : The maximum number of steps ."""
if not 0 <= start <= 1 : raise ValueError ( 'Values must be between 0 and 1.' ) if not 0 <= end <= 1 : raise ValueError ( 'Values must be between 0 and 1.' ) raw_start = self . _to_single_raw_pwm ( start ) raw_end = self . _to_single_raw_pwm ( end ) return abs ( raw_start - raw_end )
def event_listeners ( self ) : """List of registered event listeners ."""
return ( self . __command_listeners [ : ] , self . __server_heartbeat_listeners [ : ] , self . __server_listeners [ : ] , self . __topology_listeners [ : ] )
def RegisterPlugin ( self , report_plugin_cls ) : """Registers a report plugin for use in the GRR UI ."""
name = report_plugin_cls . __name__ if name in self . plugins : raise RuntimeError ( "Can't register two report plugins with the same " "name. In particular, can't register the same " "report plugin twice: %r" % name ) self . plugins [ name ] = report_plugin_cls
def has_encrypt_cert_in_metadata ( self , sp_entity_id ) : """Verifies if the metadata contains encryption certificates . : param sp _ entity _ id : Entity ID for the calling service provider . : return : True if encrypt cert exists in metadata , otherwise False ."""
if sp_entity_id is not None : _certs = self . metadata . certs ( sp_entity_id , "any" , "encryption" ) if len ( _certs ) > 0 : return True return False
def _set_ospf ( self , v , load = False ) : """Setter method for ospf , mapped from YANG variable / rbridge _ id / ipv6 / router / ospf ( list ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ ospf is considered as a private method . Backends looking to populate this ...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = YANGListType ( "vrf" , ospf . ospf , yang_name = "ospf" , rest_name = "ospf" , parent = self , is_container = 'list' , user_ordered = False , path_helper = self . _path_helper , yang_keys = 'vrf' , extensions = { u'tailf-comm...
def Orth ( docs , drop = 0.0 ) : """Get word forms ."""
ids = numpy . zeros ( ( sum ( len ( doc ) for doc in docs ) , ) , dtype = "i" ) i = 0 for doc in docs : for token in doc : ids [ i ] = token . orth i += 1 return ids , None
def get_organism_permissions ( self , group ) : """Get the group ' s organism permissions : type group : str : param group : group name : rtype : list : return : a list containing organism permissions ( if any )"""
data = { 'name' : group , } response = _fix_group ( self . post ( 'getOrganismPermissionsForGroup' , data ) ) return response
def get_authority ( config , metrics , rrset_channel , ** kwargs ) : """Get a GCEAuthority client . A factory function that validates configuration and creates a proper GCEAuthority . Args : config ( dict ) : GCEAuthority related configuration . metrics ( obj ) : : interface : ` IMetricRelay ` implementat...
builder = authority . GCEAuthorityBuilder ( config , metrics , rrset_channel , ** kwargs ) return builder . build_authority ( )
def is_image_loaded ( webdriver , webelement ) : '''Check if an image ( in an image tag ) is loaded . Note : This call will not work against background images . Only Images in < img > tags . Args : webelement ( WebElement ) - WebDriver web element to validate .'''
script = ( u ( "return arguments[0].complete && type of arguments[0].naturalWidth != \"undefined\" " ) + u ( "&& arguments[0].naturalWidth > 0" ) ) try : return webdriver . execute_script ( script , webelement ) except : return False
def format ( self ) : """The | ChartFormat | object providing access to the shape formatting properties of this data point , such as line and fill ."""
dPt = self . _ser . get_or_add_dPt_for_point ( self . _idx ) return ChartFormat ( dPt )
def _extractall ( self , path = "." , members = None ) : """Extract all members from the archive to the current working directory and set owner , modification time and permissions on directories afterwards . ` path ' specifies a different directory to extract to . ` members ' is optional and must be a subset ...
import copy import operator from tarfile import ExtractError directories = [ ] if members is None : members = self for tarinfo in members : if tarinfo . isdir ( ) : directories . append ( tarinfo ) tarinfo = copy . copy ( tarinfo ) tarinfo . mode = 448 self . extract ( tarinfo , path...
def search ( self , text ) : """Find text in log file from current position returns a tuple containing : absolute position , position in result buffer , result buffer ( the actual file contents )"""
key = hash ( text ) searcher = self . _searchers . get ( key ) if not searcher : searcher = ReverseFileSearcher ( self . filename , text ) self . _searchers [ key ] = searcher position = searcher . find ( ) if position < 0 : # reset the searcher to start from the tail again . searcher . reset ( ) return...
def url ( value , allow_empty = False , allow_special_ips = False , ** kwargs ) : """Validate that ` ` value ` ` is a valid URL . . . note : : URL validation is . . . complicated . The methodology that we have adopted here is * generally * compliant with ` RFC 1738 < https : / / tools . ietf . org / html / ...
is_recursive = kwargs . pop ( 'is_recursive' , False ) if not value and not allow_empty : raise errors . EmptyValueError ( 'value (%s) was empty' % value ) elif not value : return None if not isinstance ( value , basestring ) : raise errors . CannotCoerceError ( 'value must be a valid string, ' 'was %s' % t...
def _insert ( self , namespace , stream , events , configuration ) : """` namespace ` acts as db for different streams ` stream ` is the name of a stream and ` events ` is a list of events to insert ."""
index = self . index_manager . get_index ( namespace ) start_dts_to_add = set ( ) def actions ( ) : for _id , event in events : dt = kronos_time_to_datetime ( uuid_to_kronos_time ( _id ) ) start_dts_to_add . add ( _round_datetime_down ( dt ) ) event [ '_index' ] = index event [ '_typ...
def check_data ( self ) : """Check that definitions file is present , and that faces file is readable ."""
assert os . path . exists ( self . data_fp ) if gis : with fiona . drivers ( ) : with fiona . open ( self . faces_fp ) as src : assert src . meta gpkg_hash = json . load ( open ( self . data_fp ) ) [ 'metadata' ] [ 'sha256' ] assert gpkg_hash == sha256 ( self . faces_fp )
def lrem ( self , key , count , value ) : """Removes the first count occurrences of elements equal to value from the list stored at key . : raises TypeError : if count is not int"""
if not isinstance ( count , int ) : raise TypeError ( "count argument must be int" ) return self . execute ( b'LREM' , key , count , value )
def _cim_qualifier ( key , value ) : """Return a CIMQualifier object , from dict item input ( key + value ) , after performing some checks . If the input value is a CIMQualifier object , it is returned . Otherwise , a new CIMQualifier object is created from the input value , and returned ."""
if key is None : raise ValueError ( "Qualifier name must not be None" ) if isinstance ( value , CIMQualifier ) : if value . name . lower ( ) != key . lower ( ) : raise ValueError ( _format ( "CIMQualifier.name must be dictionary key {0!A}, but " "is {1!A}" , key , value . name ) ) qual = value else ...
def _get_collection ( self , collection_uri , request_headers = None ) : """Generator function that returns collection members ."""
# get the collection status , headers , thecollection = self . _rest_get ( collection_uri ) if status != 200 : msg = self . _get_extended_error ( thecollection ) raise exception . IloError ( msg ) while status < 300 : # verify expected type # Don ' t limit to version 0 here as we will rev to 1.0 at some # point...
def repr ( self , changed_widgets = None ) : """It is used to automatically represent the object to HTML format packs all the attributes , children and so on . Args : changed _ widgets ( dict ) : A dictionary containing a collection of tags that have to be updated . The tag that have to be updated is the ke...
if changed_widgets is None : changed_widgets = { } local_changed_widgets = { } self . _set_updated ( ) return '' . join ( ( '<' , self . type , '>\n' , self . innerHTML ( local_changed_widgets ) , '\n</' , self . type , '>' ) )
def _load_hdf5 ( self , filename , parent_level = "CellpyData" ) : """Load a cellpy - file . Args : filename ( str ) : Name of the cellpy file . parent _ level ( str ) ( optional ) : name of the parent level ( defaults to " CellpyData " ) Returns : loaded datasets ( DataSet - object )"""
if not os . path . isfile ( filename ) : self . logger . info ( f"file does not exist: {filename}" ) raise IOError store = pd . HDFStore ( filename ) # required _ keys = [ ' dfdata ' , ' dfsummary ' , ' fidtable ' , ' info ' ] required_keys = [ 'dfdata' , 'dfsummary' , 'info' ] required_keys = [ "/" + parent_le...
def _attend_process ( self , proc , sleeptime ) : """Waits on a process for a given time to see if it finishes , returns True if it ' s still running after the given time or False as soon as it returns . : param psutil . Popen proc : Process object opened by psutil . Popen ( ) : param float sleeptime : Time...
# print ( " attend : { } " . format ( proc . pid ) ) try : proc . wait ( timeout = sleeptime ) except psutil . TimeoutExpired : return True return False
def teachers_round ( x ) : '''Do rounding such that . 5 always rounds to 1 , and not bankers rounding . This is for compatibility with matlab functions , and ease of testing .'''
if ( ( x > 0 ) and ( x % 1 >= 0.5 ) ) or ( ( x < 0 ) and ( x % 1 > 0.5 ) ) : return int ( np . ceil ( x ) ) else : return int ( np . floor ( x ) )
def dump_tracing_state ( self , context ) : """A debug tool to dump all threads tracing state"""
_logger . x_debug ( "Dumping all threads Tracing state: (%s)" % context ) _logger . x_debug ( " self.tracing_enabled=%s" % self . tracing_enabled ) _logger . x_debug ( " self.execution_started=%s" % self . execution_started ) _logger . x_debug ( " self.status=%s" % self . status ) _logger . x_debug ( " self...
async def ensureKeyPair ( self , * args , ** kwargs ) : """Ensure a KeyPair for a given worker type exists Idempotently ensure that a keypair of a given name exists This method takes input : ` ` v1 / create - key - pair . json # ` ` This method is ` ` experimental ` `"""
return await self . _makeApiCall ( self . funcinfo [ "ensureKeyPair" ] , * args , ** kwargs )
def markdown_media_css ( ) : """Add css requirements to HTML . : returns : Editor template context ."""
return dict ( CSS_SET = posixpath . join ( settings . MARKDOWN_SET_PATH , settings . MARKDOWN_SET_NAME , 'style.css' ) , CSS_SKIN = posixpath . join ( 'django_markdown' , 'skins' , settings . MARKDOWN_EDITOR_SKIN , 'style.css' ) )
def remove_client ( self , client_identifier ) : """Remove a client ."""
new_clients = self . clients new_clients . remove ( client_identifier ) yield from self . _server . group_clients ( self . identifier , new_clients ) _LOGGER . info ( 'removed %s from %s' , client_identifier , self . identifier ) self . _server . client ( client_identifier ) . callback ( ) self . callback ( )
def check_aux_coordinates ( self , ds ) : '''Chapter 5 paragraph 3 The dimensions of an auxiliary coordinate variable must be a subset of the dimensions of the variable with which the coordinate is associated , with two exceptions . First , string - valued coordinates ( Section 6.1, " Labels " ) have a dime...
ret_val = [ ] geophysical_variables = self . _find_geophysical_vars ( ds ) for name in geophysical_variables : variable = ds . variables [ name ] coordinates = getattr ( variable , 'coordinates' , None ) # We use a set so we can assert dim_set = set ( variable . dimensions ) # No auxiliary coordinat...
def make_object_graph ( obj , fpath = 'sample_graph.png' ) : """memoryprofile with objgraph Examples : # import objgraph # objgraph . show _ most _ common _ types ( ) # objgraph . show _ growth ( ) # memtrack . report ( ) # memtrack . report ( ) # objgraph . show _ growth ( ) # import gc # gc . co...
import objgraph objgraph . show_most_common_types ( ) # print ( objgraph . by _ type ( ' ndarray ' ) ) # objgraph . find _ backref _ chain ( # random . choice ( objgraph . by _ type ( ' ndarray ' ) ) , # objgraph . is _ proper _ module ) objgraph . show_refs ( [ obj ] , filename = 'ref_graph.png' ) objgraph . show_back...
def PureDotProductAttention ( dropout = 0.0 , mode = 'train' ) : """Pure single - headed self - attention . Args : dropout : float : dropout rate mode : str : ' train ' or ' eval ' Returns : Pure single - headed attention layer . ( No Dense transforms on input . )"""
def init_fun ( _ , input_shapes ) : # pylint : disable = invalid - name q_shape , _ , v_shape , _ = input_shapes output_shape = q_shape [ : - 1 ] + ( v_shape [ - 1 ] , ) return output_shape , ( ) def apply_fun ( params , inputs , ** kwargs ) : # pylint : disable = invalid - name del params q , k , v...
def extract_literal_bool ( templatevar ) : """See if a template FilterExpression holds a literal boolean value . : type templatevar : django . template . FilterExpression : rtype : bool | None"""
# FilterExpression contains another ' var ' that either contains a Variable or SafeData object . if hasattr ( templatevar , 'var' ) : templatevar = templatevar . var if isinstance ( templatevar , SafeData ) : # Literal in FilterExpression , can return . return is_true ( templatevar ) else : # Variab...
def gelu ( x ) : """Gaussian Error Linear Unit . This is a smoother version of the RELU . Original paper : https : / / arxiv . org / abs / 1606.08415 Args : x : float Tensor to perform activation . Returns : x with the GELU activation applied ."""
cdf = 0.5 * ( 1.0 + tf . tanh ( ( np . sqrt ( 2 / np . pi ) * ( x + 0.044715 * tf . pow ( x , 3 ) ) ) ) ) return x * cdf
def get_ranked_players ( ) : """Get the list of the first 100 ranked players ."""
rankings_page = requests . get ( RANKINGS_URL ) root = etree . HTML ( rankings_page . text ) player_rows = root . xpath ( '//div[@id="ranked"]//tr' ) for row in player_rows [ 1 : ] : player_row = row . xpath ( 'td[@class!="country"]//text()' ) yield _Player ( name = player_row [ 1 ] , country = row [ 1 ] [ 0 ] ...
def withdraw_ong ( self , claimer : Account , b58_recv_address : str , amount : int , payer : Account , gas_limit : int , gas_price : int ) -> str : """This interface is used to withdraw a amount of ong and transfer them to receive address . : param claimer : the owner of ong that remained to claim . : param b5...
if claimer is None : raise SDKException ( ErrorCode . param_err ( 'the claimer should not be None.' ) ) if payer is None : raise SDKException ( ErrorCode . param_err ( 'the payer should not be None.' ) ) if amount <= 0 : raise SDKException ( ErrorCode . other_error ( 'the amount should be greater than than ...
def visit_Import ( self , node ) : """Check if imported module exists in MODULES ."""
for alias in node . names : current_module = MODULES # Recursive check for submodules for path in alias . name . split ( '.' ) : if path not in current_module : raise PythranSyntaxError ( "Module '{0}' unknown." . format ( alias . name ) , node ) else : current_module...
def get_dataset ( self , key , info ) : """Load a dataset ."""
logger . debug ( 'Reading in get_dataset %s.' , key . name ) radiances = self [ 'Rad' ] if key . calibration == 'reflectance' : logger . debug ( "Calibrating to reflectances" ) res = self . _vis_calibrate ( radiances ) elif key . calibration == 'brightness_temperature' : logger . debug ( "Calibrating to bri...
def values ( self ) : """Return the list of values ."""
def collect ( d ) : if d is None or d . get ( 'FIRST' ) is None : return [ ] vals = [ d [ 'FIRST' ] ] vals . extend ( collect ( d . get ( 'REST' ) ) ) return vals return collect ( self )
def load_mplstyle ( ) : """Try to load conf . plot . mplstyle matplotlib style ."""
plt = importlib . import_module ( 'matplotlib.pyplot' ) if conf . plot . mplstyle : for style in conf . plot . mplstyle . split ( ) : stfile = config . CONFIG_DIR / ( style + '.mplstyle' ) if stfile . is_file ( ) : style = str ( stfile ) try : plt . style . use ( styl...
def from_file ( cls , f ) : """Read configuration from a file - like object ."""
ret = cls ( ) section = None setting = None for lineno , line in enumerate ( f . readlines ( ) ) : line = line . lstrip ( ) if setting is None : if _strip_comments ( line ) . strip ( ) == "" : continue if line [ 0 ] == "[" : line = _strip_comments ( line ) . rstrip ( ) ...
def on_install ( self , editor ) : """Extends : meth : ` spyder . api . EditorExtension . on _ install ` method to set the editor instance as the parent widget . . . warning : : Don ' t forget to call * * super * * if you override this method ! : param editor : editor instance : type editor : spyder . plu...
EditorExtension . on_install ( self , editor ) self . setParent ( editor ) self . setPalette ( QApplication . instance ( ) . palette ( ) ) self . setFont ( QApplication . instance ( ) . font ( ) ) self . editor . panels . refresh ( ) self . _background_brush = QBrush ( QColor ( self . palette ( ) . window ( ) . color (...
async def register ( self , node , * , check = None , service = None , write_token = None ) : """Registers a new node , service or check Parameters : node ( Object ) : Node definition check ( Object ) : Check definition service ( Object or ObjectID ) : Service write _ token ( ObjectID ) : Token ID Retur...
node_id , node = prepare_node ( node ) service_id , service = prepare_service ( service ) _ , check = prepare_check ( check ) if check and node_id : check [ "Node" ] = node_id if check and service_id : check [ "ServiceID" ] = service_id token = extract_attr ( write_token , keys = [ "ID" ] ) entry = node if serv...
def save ( self , ** kwargs ) : """Overrides models . Model . save . - Generates slug . - Saves image file ."""
if not self . width or not self . height : self . width , self . height = self . image . width , self . image . height # prefill the slug with the ID , it requires double save if not self . id : img = self . image # store dummy values first . . . w , h = self . width , self . height self . image = '...
def as_string ( self , name = None ) : """Declares a stream converting each tuple on this stream into a string using ` str ( tuple ) ` . The stream is typed as a : py : const : ` string stream < streamsx . topology . schema . CommonSchema . String > ` . If this stream is already typed as a string stream then ...
sas = self . _change_schema ( streamsx . topology . schema . CommonSchema . String , 'as_string' , name ) . _layout ( 'AsString' ) sas . oport . operator . sl = _SourceLocation ( _source_info ( ) , 'as_string' ) return sas
def get_name ( self ) : """Returns name of the container : return : str"""
self . name = self . name or graceful_get ( self . inspect ( refresh = False ) , "Name" ) return self . name
def change_breakpoint_state ( self , bp_number , enabled , condition = None ) : """Change breakpoint status or ` condition ` expression . : param bp _ number : number of breakpoint to change : return : None or an error message ( string )"""
if not ( 0 <= bp_number < len ( IKBreakpoint . breakpoints_by_number ) ) : return "Found no breakpoint numbered: %s" % bp_number bp = IKBreakpoint . breakpoints_by_number [ bp_number ] if not bp : return "Found no breakpoint numbered %s" % bp_number _logger . b_debug ( " change_breakpoint_state(bp_number=%s,...
def subshell ( shell_cls , * commands , ** kwargs ) : """Decorate a function to conditionally launch a _ ShellBase subshell . Arguments : shell _ cls : A subclass of _ ShellBase to be launched . commands : Names of command that should trigger this function object . kwargs : The keyword arguments for the com...
def decorated_func ( f ) : def inner_func ( self , cmd , args ) : retval = f ( self , cmd , args ) # Do not launch the subshell if the return value is None . if not retval : return # Pass the context ( see the doc string ) to the subshell if the # return value is ...
def get_variable_definitions ( self , block_addr ) : """Get variables that are defined at the specified block . : param int block _ addr : Address of the block . : return : A set of variables ."""
if block_addr in self . _outstates : return self . _outstates [ block_addr ] . variables return set ( )
def get_userids_for_address ( self , address : Address ) -> Set [ str ] : """Return all known user ids for the given ` ` address ` ` ."""
if not self . is_address_known ( address ) : return set ( ) return self . _address_to_userids [ address ]
def _filesystems ( config = '/etc/filesystems' , leading_key = True ) : '''Return the contents of the filesystems in an OrderedDict config File containing filesystem infomation leading _ key True return dictionary keyed by ' name ' and value as dictionary with other keys , values ( name excluded ) Ordered...
ret = OrderedDict ( ) lines = [ ] parsing_block = False if not os . path . isfile ( config ) or 'AIX' not in __grains__ [ 'kernel' ] : return ret # read in block of filesystems , block starts with ' / ' till empty line with salt . utils . files . fopen ( config ) as ifile : for line in ifile : line = sa...
def d2Ibr_dV2 ( Ybr , V , lam ) : """Computes 2nd derivatives of complex branch current w . r . t . voltage ."""
nb = len ( V ) diaginvVm = spdiag ( div ( matrix ( 1.0 , ( nb , 1 ) ) , abs ( V ) ) ) Haa = spdiag ( mul ( - ( Ybr . T * lam ) , V ) ) Hva = - 1j * Haa * diaginvVm Hav = Hva Hvv = spmatrix ( [ ] , [ ] , [ ] , ( nb , nb ) ) return Haa , Hav , Hva , Hvv
def _parseLoadConfigDirectory ( self , rva , size , magic = consts . PE32 ) : """Parses IMAGE _ LOAD _ CONFIG _ DIRECTORY . @ type rva : int @ param rva : The RVA where the IMAGE _ LOAD _ CONFIG _ DIRECTORY starts . @ type size : int @ param size : The size of the IMAGE _ LOAD _ CONFIG _ DIRECTORY . @ typ...
# print " RVA : % x - SIZE : % x " % ( rva , size ) # I ' ve found some issues when parsing the IMAGE _ LOAD _ CONFIG _ DIRECTORY in some DLLs . # There is an inconsistency with the size of the struct between MSDN docs and VS . # sizeof ( IMAGE _ LOAD _ CONFIG _ DIRECTORY ) should be 0x40 , in fact , that ' s the size ...
def arctic_url ( context , link , * args , ** kwargs ) : """Resolves links into urls with optional arguments set in self . urls . please check get _ urls method in View . We could tie this to check _ url _ access ( ) to check for permissions , including object - level ."""
def reverse_mutable_url_args ( url_args ) : mutated_url_args = [ ] for arg in url_args : # listview item , and argument is a string if "item" in context and type ( arg ) == str : # try to get attribute of this object try : arg = getattr ( context [ "v" ] , arg . split ( "." )...
def _is_empty_cache_record ( self , rec ) : """Return True if the specified cache record has no data , False otherwise . : param rec : cache record returned by : py : meth : ` ~ . _ cache _ get ` : type rec : dict : return : True if record is empty , False otherwise : rtype : bool"""
# these are taken from DataQuery . query _ one _ table ( ) for k in [ 'by_version' , 'by_file_type' , 'by_installer' , 'by_implementation' , 'by_system' , 'by_distro' , 'by_country' ] : if k in rec and len ( rec [ k ] ) > 0 : return False return True
def _SetCompleted ( self ) : """Atomically marks the breakpoint as completed . Returns : True if the breakpoint wasn ' t marked already completed or False if the breakpoint was already completed ."""
with self . _lock : if self . _completed : return False self . _completed = True return True
def get_tops ( self ) : '''Gather the top files'''
tops = DefaultOrderedDict ( list ) include = DefaultOrderedDict ( list ) done = DefaultOrderedDict ( list ) found = 0 # did we find any contents in the top files ? # Gather initial top files merging_strategy = self . opts [ 'top_file_merging_strategy' ] if merging_strategy == 'same' and not self . opts [ 'saltenv' ] : ...
def list_node ( self , tab_level = - 1 ) : """Lists the current Node and its children . Usage : : > > > node _ a = AbstractCompositeNode ( " MyNodeA " ) > > > node _ b = AbstractCompositeNode ( " MyNodeB " , node _ a ) > > > node _ c = AbstractCompositeNode ( " MyNodeC " , node _ a ) > > > print node _ a ...
output = "" tab_level += 1 for i in range ( tab_level ) : output += "\t" output += "|----'{0}'\n" . format ( self . name ) for child in self . __children : output += child . list_node ( tab_level ) tab_level -= 1 return output
def catch_exceptions ( * exceptions ) : """Catch all exceptions provided as arguments , and raise CloudApiException instead ."""
def wrap ( fn ) : @ functools . wraps ( fn ) def wrapped_f ( * args , ** kwargs ) : try : return fn ( * args , ** kwargs ) except exceptions : t , value , traceback = sys . exc_info ( ) # If any resource does not exist , return None instead of raising ...
def get ( self , name ) : '''Return a secondary property value from the Node . Args : name ( str ) : The name of a secondary property . Returns : ( obj ) : The secondary property value or None .'''
if name . startswith ( '#' ) : return self . tags . get ( name [ 1 : ] ) return self . props . get ( name )
def word_tokenize ( text : str , custom_dict : Trie = None , engine : str = "newmm" , keep_whitespace : bool = True , ) -> List [ str ] : """: param str text : text to be tokenized : param str engine : tokenizer to be used : param dict custom _ dict : a dictionary trie : param bool keep _ whitespace : True to...
if not text or not isinstance ( text , str ) : return [ ] segments = [ ] if engine == "newmm" or engine == "onecut" : from . newmm import segment segments = segment ( text , custom_dict ) elif engine == "longest" : from . longest import segment segments = segment ( text , custom_dict ) elif engine =...
def load_config ( self , config_path = None ) : """Load application configuration from a file and merge it with the default configuration . If the ` ` FEDORA _ MESSAGING _ CONF ` ` environment variable is set to a filesystem path , the configuration will be loaded from that location . Otherwise , the path d...
self . loaded = True config = copy . deepcopy ( DEFAULTS ) if config_path is None : if "FEDORA_MESSAGING_CONF" in os . environ : config_path = os . environ [ "FEDORA_MESSAGING_CONF" ] else : config_path = "/etc/fedora-messaging/config.toml" if os . path . exists ( config_path ) : _log . info...
def get_account_tokens ( address , hostport = None , proxy = None ) : """Get the types of tokens that an address owns Returns a list of token types"""
assert proxy or hostport , 'Need proxy or hostport' if proxy is None : proxy = connect_hostport ( hostport ) tokens_schema = { 'type' : 'object' , 'properties' : { 'token_types' : { 'type' : 'array' , 'pattern' : '^(.+){1,19}' , } , } , 'required' : [ 'token_types' , ] } schema = json_response_schema ( tokens_schem...
def download_and_verify ( path , source_url , sha256 ) : """Download a file to a given path from a given URL , if it does not exist . After downloading it , verify it integrity by checking the SHA - 256 hash . Parameters path : str The ( destination ) path of the file on the local filesystem source _ url ...
if os . path . exists ( path ) : # Already exists ? # Nothing to do , except print the SHA - 256 if necessary if sha256 is None : print ( 'The SHA-256 of {} is "{}"' . format ( path , compute_sha256 ( path ) ) ) return path # Compute the path of the unverified file unverified_path = path + '.unverified'...