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def add_device_not_active_callback ( self , callback ) : """Register callback to be invoked when a device is not responding ."""
_LOGGER . debug ( 'Added new callback %s ' , callback ) self . _cb_device_not_active . append ( callback )
def delete_collection_namespaced_role_binding ( self , namespace , ** kwargs ) : # noqa : E501 """delete _ collection _ namespaced _ role _ binding # noqa : E501 delete collection of RoleBinding # noqa : E501 This method makes a synchronous HTTP request by default . To make an asynchronous HTTP request , plea...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'async_req' ) : return self . delete_collection_namespaced_role_binding_with_http_info ( namespace , ** kwargs ) # noqa : E501 else : ( data ) = self . delete_collection_namespaced_role_binding_with_http_info ( namespace , ** kwargs ) # noqa :...
def set_export ( args ) : '''Return a list of lines in TSV form that would suffice to reconstitute a container ( set ) entity , if passed to entity _ import . The first line in the list is the header , and subsequent lines are the container members .'''
r = fapi . get_entity ( args . project , args . workspace , args . entity_type , args . entity ) fapi . _check_response_code ( r , 200 ) set_type = args . entity_type set_name = args . entity member_type = set_type . split ( '_' ) [ 0 ] members = r . json ( ) [ 'attributes' ] [ member_type + 's' ] [ 'items' ] result = ...
def _check_rule ( rule , _rule ) : '''Check to see if two rules are the same . Needed to compare rules fetched from boto , since they may not completely match rules defined in sls files but may be functionally equivalent .'''
# We need to alter what Boto returns if no ports are specified # so that we can compare rules fairly . # Boto returns None for from _ port and to _ port where we ' re required # to pass in " - 1 " instead . if _rule . get ( 'from_port' ) is None : _rule [ 'from_port' ] = - 1 if _rule . get ( 'to_port' ) is None : ...
def get_inconsistent_fieldnames ( ) : """Returns a set of keys from settings . CONFIG that are not accounted for in settings . CONFIG _ FIELDSETS . If there are no fieldnames in settings . CONFIG _ FIELDSETS , returns an empty set ."""
field_name_list = [ ] for fieldset_title , fields_list in settings . CONFIG_FIELDSETS . items ( ) : for field_name in fields_list : field_name_list . append ( field_name ) if not field_name_list : return { } return set ( set ( settings . CONFIG . keys ( ) ) - set ( field_name_list ) )
def _maintain_parent ( self , request , response ) : """Maintain the parent ID in the querystring for response _ add and response _ change ."""
location = response . _headers . get ( "location" ) parent = request . GET . get ( "parent" ) if parent and location and "?" not in location [ 1 ] : url = "%s?parent=%s" % ( location [ 1 ] , parent ) return HttpResponseRedirect ( url ) return response
def parse ( self ) : """Parses configuration file items from one or more related sections ."""
for section_name , section_options in self . sections . items ( ) : method_postfix = '' if section_name : # [ section . option ] variant method_postfix = '_%s' % section_name section_parser_method = getattr ( self , # Dots in section names are tranlsated into dunderscores . ( 'parse_section%s' %...
def _compute_chunk_size ( self ) : # type : ( Descriptor ) - > int """Compute chunk size given block list : param Descriptor self : this : rtype : int : return : chunk size bytes"""
if self . _src_block_list is not None : blen = len ( self . _src_block_list ) if blen == 0 : # this is a one - shot block blob return self . _src_ase . size elif blen == 1 : return self . _src_block_list [ 0 ] . size else : return - 1 else : return _MAX_NONBLOCK_BLOB_CHUNKSIZ...
def estimate ( path ) : '''Estimate the space that an XFS filesystem will take . For each directory estimate the space that directory would take if it were copied to an XFS filesystem . Estimation does not cross mount points . CLI Example : . . code - block : : bash salt ' * ' xfs . estimate / path / to...
if not os . path . exists ( path ) : raise CommandExecutionError ( "Path \"{0}\" was not found." . format ( path ) ) out = __salt__ [ 'cmd.run_all' ] ( "xfs_estimate -v {0}" . format ( path ) ) _verify_run ( out ) return _xfs_estimate_output ( out [ "stdout" ] )
def pin ( self , spec , pin_class = None , ** kwargs ) : """The pin method for : class : ` MockFactory ` additionally takes a * pin _ class * attribute which can be used to override the class ' : attr : ` pin _ class ` attribute . Any additional keyword arguments will be passed along to the pin constructor ( ...
if pin_class is None : pin_class = self . pin_class n = self . pi_info . to_gpio ( spec ) try : pin = self . pins [ n ] except KeyError : pin = pin_class ( self , n , ** kwargs ) self . pins [ n ] = pin else : # Ensure the pin class expected supports PWM ( or not ) if issubclass ( pin_class , MockPW...
def update_group ( self , group_id , name ) : """Change group name : param group _ id : Id of group : param name : Group name"""
parameters = { 'name' : name } url = self . TEAM_GROUPS_ID_URL % group_id connection = Connection ( self . token ) connection . set_url ( self . production , url ) connection . add_header ( 'Content-Type' , 'application/json' ) connection . add_params ( parameters ) return connection . patch_request ( )
def get ( self , key , default = CACHE_MISS ) : """Get a value out of the cache Returns CACHE _ DISABLED if the cache is disabled : param key : key to search for : param default : value to return if the key is not found ( defaults to CACHE _ MISS )"""
if not self . options . enabled : return CACHE_DISABLED ret = default if self . has ( key ) : ret = self . _dict [ key ] . value logger . debug ( 'get({}, default={}) == {}' . format ( repr ( key ) , repr ( default ) , repr ( ret ) ) ) return ret
def complete ( self ) : """Consider a transcript complete if it has start and stop codons and a coding sequence whose length is divisible by 3"""
return ( self . contains_start_codon and self . contains_stop_codon and self . coding_sequence is not None and len ( self . coding_sequence ) % 3 == 0 )
def cli ( ctx , id_number , new_key , metadata = "" ) : """Update a canned key Output : an empty dictionary"""
return ctx . gi . cannedkeys . update_key ( id_number , new_key , metadata = metadata )
def gridPen ( self ) : """Returns the pen that will be used when drawing the grid lines . : return < QtGui . QPen >"""
delegate = self . itemDelegate ( ) if isinstance ( delegate , XTreeWidgetDelegate ) : return delegate . gridPen ( ) return QtGui . QPen ( )
def from_dict ( data , ctx ) : """Instantiate a new DynamicOrderState from a dict ( generally from loading a JSON response ) . The data used to instantiate the DynamicOrderState is a shallow copy of the dict passed in , with any complex child types instantiated appropriately ."""
data = data . copy ( ) if data . get ( 'trailingStopValue' ) is not None : data [ 'trailingStopValue' ] = ctx . convert_decimal_number ( data . get ( 'trailingStopValue' ) ) if data . get ( 'triggerDistance' ) is not None : data [ 'triggerDistance' ] = ctx . convert_decimal_number ( data . get ( 'triggerDistanc...
def metaclass ( * metaclasses ) : # type : ( * type ) - > Callable [ [ type ] , type ] """Create the class using all metaclasses . Args : metaclasses : A tuple of metaclasses that will be used to generate and replace a specified class . Returns : A decorator that will recreate the class using the specifie...
def _inner ( cls ) : # pragma pylint : disable = unused - variable metabases = tuple ( collections . OrderedDict ( # noqa : F841 ( c , None ) for c in ( metaclasses + ( type ( cls ) , ) ) ) . keys ( ) ) # pragma pylint : enable = unused - variable _Meta = metabases [ 0 ] for base in metabases [ 1 : ...
def leave_room ( self , sid , namespace , room ) : """Remove a client from a room ."""
try : del self . rooms [ namespace ] [ room ] [ sid ] if len ( self . rooms [ namespace ] [ room ] ) == 0 : del self . rooms [ namespace ] [ room ] if len ( self . rooms [ namespace ] ) == 0 : del self . rooms [ namespace ] except KeyError : pass
def last_archive ( self ) : '''Get the last available archive : return :'''
archives = { } for archive in self . archives ( ) : archives [ int ( archive . split ( '.' ) [ 0 ] . split ( '-' ) [ - 1 ] ) ] = archive return archives and archives [ max ( archives ) ] or None
def run_validators ( self , value ) : """Run the validators on the setting value ."""
errors = [ ] for validator in self . validators : try : validator ( value ) except ValidationError as error : errors . extend ( error . messages ) if errors : raise ValidationError ( errors )
def by_pattern ( self , pattern , zipcode_type = ZipcodeType . Standard , sort_by = SimpleZipcode . zipcode . name , ascending = True , returns = DEFAULT_LIMIT ) : """Search zipcode by wildcard . Returns multiple results ."""
return self . query ( pattern = pattern , sort_by = sort_by , zipcode_type = zipcode_type , ascending = ascending , returns = returns , )
def _find_usage_networking_sgs ( self ) : """calculate usage for VPC - related things"""
logger . debug ( "Getting usage for EC2 VPC resources" ) sgs_per_vpc = defaultdict ( int ) rules_per_sg = defaultdict ( int ) for sg in self . resource_conn . security_groups . all ( ) : if sg . vpc_id is not None : sgs_per_vpc [ sg . vpc_id ] += 1 rules_per_sg [ sg . id ] = len ( sg . ip_permission...
def use_federated_vault_view ( self ) : """Pass through to provider AuthorizationLookupSession . use _ federated _ vault _ view"""
self . _vault_view = FEDERATED # self . _ get _ provider _ session ( ' authorization _ lookup _ session ' ) # To make sure the session is tracked for session in self . _get_provider_sessions ( ) : try : session . use_federated_vault_view ( ) except AttributeError : pass
def _marshal ( self , obj ) : """Walks an object and marshals any psphere object into MORs ."""
logger . debug ( "Checking if %s needs to be marshalled" , obj ) if isinstance ( obj , ManagedObject ) : logger . debug ( "obj is a psphere object, converting to MOR" ) return obj . _mo_ref if isinstance ( obj , list ) : logger . debug ( "obj is a list, recursing it" ) new_list = [ ] for item in obj...
def chunk ( iterable , size ) : """chunk ( ' ABCDEFG ' , 3 ) - - > ABC DEF G"""
# TODO : only used in gui . mainwindow ( deprecated ) iterator = iter ( iterable ) while size : result = [ ] try : for i in range ( size ) : elem = next ( iterator ) result . append ( elem ) yield tuple ( result ) except StopIteration : if result : ...
def is_python_inside ( self , file_path ) : # type : ( str ) - > bool """If . py , yes . If extensionless , open file and check shebang TODO : support variations on this : # ! / usr / bin / env python : param file _ path : : return :"""
if file_path . endswith ( ".py" ) : return True # duh . # not supporting surprising extensions , ege . . py2 , . python , . corn _ chowder # extensionless if "." not in file_path : try : firstline = self . open_this ( file_path , "r" ) . readline ( ) if firstline . startswith ( "#" ) and "python...
def dbmin20years ( self , value = None ) : """Corresponds to IDD Field ` dbmin20years ` 20 - year return period values for minimum extreme dry - bulb temperature Args : value ( float ) : value for IDD Field ` dbmin20years ` Unit : C if ` value ` is None it will not be checked against the specification a...
if value is not None : try : value = float ( value ) except ValueError : raise ValueError ( 'value {} need to be of type float ' 'for field `dbmin20years`' . format ( value ) ) self . _dbmin20years = value
def get_cache_base ( suffix = None ) : """Return the default base location for distlib caches . If the directory does not exist , it is created . Use the suffix provided for the base directory , and default to ' . distlib ' if it isn ' t provided . On Windows , if LOCALAPPDATA is defined in the environment , ...
if suffix is None : suffix = '.distlib' if os . name == 'nt' and 'LOCALAPPDATA' in os . environ : result = os . path . expandvars ( '$localappdata' ) else : # Assume posix , or old Windows result = os . path . expanduser ( '~' ) # we use ' isdir ' instead of ' exists ' , because we want to # fail if there '...
def enable_tracing ( self , thread_trace_func = None ) : '''Enables tracing . If in regular mode ( tracing ) , will set the tracing function to the tracing function for this thread - - by default it ' s ` PyDB . trace _ dispatch ` , but after ` PyDB . enable _ tracing ` is called with a ` thread _ trace _ fun...
if self . frame_eval_func is not None : self . frame_eval_func ( ) pydevd_tracing . SetTrace ( self . dummy_trace_dispatch ) return if thread_trace_func is None : thread_trace_func = self . get_thread_local_trace_func ( ) else : self . _local_thread_trace_func . thread_trace_func = thread_trace_func...
def __calculate_sigmoid ( self ) : '''Function of temperature . Returns : Sigmoid .'''
sigmoid = 1 / np . log ( self . t * self . time_rate + 1.1 ) return sigmoid
def freeze ( self ) : """Call this method if you want to make your response object ready for being pickled . This buffers the generator if there is one . It will also set the ` Content - Length ` header to the length of the body . . . versionchanged : : 0.6 The ` Content - Length ` header is now set ."""
# we explicitly set the length to a list of the * encoded * response # iterator . Even if the implicit sequence conversion is disabled . self . response = list ( self . iter_encoded ( ) ) self . headers [ 'Content-Length' ] = str ( sum ( map ( len , self . response ) ) )
def load_graphdef ( model_url , reset_device = True ) : """Load GraphDef from a binary proto file ."""
graph_def = load ( model_url ) if reset_device : for n in graph_def . node : n . device = "" return graph_def
def plot ( self ) : '''Plot the results of the run method .'''
try : from matplotlib import pylab except ImportError : raise ImportError ( 'Optional dependency matplotlib not installed.' ) if self . walked : fig = pylab . figure ( ) ax1 = fig . add_subplot ( 111 ) ax1 . plot ( self . core_starts , self . scores , 'bo-' ) pylab . xlabel ( 'Core sequence star...
def _append ( self , target , value ) : """Replace PHP ' s [ ] = idiom"""
return self . __p ( target ) + '[] = ' + self . __p ( value ) + ';'
def write_gzip ( content , abspath ) : """Write binary content to gzip file . * * 中文文档 * * 将二进制内容压缩后编码写入gzip压缩文件 。"""
with gzip . open ( abspath , "wb" ) as f : f . write ( content )
def ignore_exception ( exception_class ) : """A decorator that ignores ` exception _ class ` exceptions"""
def _decorator ( func ) : def newfunc ( * args , ** kwds ) : try : return func ( * args , ** kwds ) except exception_class : pass return newfunc return _decorator
def process_tokens ( words , normalize_plurals = True ) : """Normalize cases and remove plurals . Each word is represented by the most common case . If a word appears with an " s " on the end and without an " s " on the end , the version with " s " is assumed to be a plural and merged with the version witho...
# words can be either a list of unigrams or bigrams # d is a dict of dicts . # Keys of d are word . lower ( ) . Values are dicts # counting frequency of each capitalization d = defaultdict ( dict ) for word in words : word_lower = word . lower ( ) # get dict of cases for word _ lower case_dict = d [ word_lo...
def _open_url ( cls , url ) : """Given a CFURL Python object , return an opened ExtAudioFileRef ."""
file_obj = ctypes . c_void_p ( ) check ( _coreaudio . ExtAudioFileOpenURL ( url . _obj , ctypes . byref ( file_obj ) ) ) return file_obj
def _higher_function_scope ( node ) : """Search for the first function which encloses the given scope . This can be used for looking up in that function ' s scope , in case looking up in a lower scope for a particular name fails . : param node : A scope node . : returns : ` ` None ` ` , if no parent fun...
current = node while current . parent and not isinstance ( current . parent , nodes . FunctionDef ) : current = current . parent if current and current . parent : return current . parent return None
def add_field ( self , name , default = None , required = False , error = None ) : """Add a text / non - file field to parse for a value in the request"""
if name is None : return self . field_arguments . append ( dict ( name = name , default = default , required = required , error = error ) )
def get_comments ( self , endpoint = "deviation" , deviationid = "" , commentid = "" , username = "" , statusid = "" , ext_item = False , offset = 0 , limit = 10 , maxdepth = 0 ) : """Fetch comments : param endpoint : The source / endpoint you want to fetch comments from ( deviation / profile / status / siblings ...
if endpoint == "deviation" : if deviationid : response = self . _req ( '/comments/{}/{}' . format ( endpoint , deviationid ) , { "commentid" : commentid , 'offset' : offset , 'limit' : limit , 'maxdepth' : maxdepth } ) else : raise DeviantartError ( "No deviationid defined." ) elif endpoint == "...
def _pyfftw_destroys_input ( flags , direction , halfcomplex , ndim ) : """Return ` ` True ` ` if FFTW destroys an input array , ` ` False ` ` otherwise ."""
if any ( flag in flags or _pyfftw_to_local ( flag ) in flags for flag in ( 'FFTW_MEASURE' , 'FFTW_PATIENT' , 'FFTW_EXHAUSTIVE' , 'FFTW_DESTROY_INPUT' ) ) : return True elif ( direction in ( 'backward' , 'FFTW_BACKWARD' ) and halfcomplex and ndim != 1 ) : return True else : return False
def evaluate ( self , context ) : """Interpolates the HTML source with the context , then returns that HTML and the text extracted from that html ."""
html = self . _source . format ( ** context ) parts = { "text/html" : html , "text/plain" : textFromHTML ( html ) } return { } , parts
def qteModificationChanged ( self , mod ) : """Update the modification status in the mode bar . This slot is Connected to the ` ` modificationChanged ` ` signal from the ` ` QtmacsScintilla ` ` widget ."""
if mod : s = '*' else : s = '-' self . _qteModeBar . qteChangeModeValue ( 'MODIFIED' , s )
def pWMRead ( fileHandle , alphabetSize = 4 ) : """reads in standard position weight matrix format , rows are different types of base , columns are individual residues"""
lines = fileHandle . readlines ( ) assert len ( lines ) == alphabetSize l = [ [ float ( i ) ] for i in lines [ 0 ] . split ( ) ] for line in lines [ 1 : ] : l2 = [ float ( i ) for i in line . split ( ) ] assert len ( l ) == len ( l2 ) for i in xrange ( 0 , len ( l ) ) : l [ i ] . append ( l2 [ i ] )...
def validate ( self , instance , value ) : """Determine if array is valid based on shape and dtype"""
if not isinstance ( value , ( tuple , list , np . ndarray ) ) : self . error ( instance , value ) if self . coerce : value = self . wrapper ( value ) valid_class = ( self . wrapper if isinstance ( self . wrapper , type ) else np . ndarray ) if not isinstance ( value , valid_class ) : self . error ( instance...
def as_msg ( self ) : """Convert ourself to be a message part of the appropriate MIME type . Return : MIMEBase Exceptions : None"""
# Based upon http : / / docs . python . org / 2 / library / email - examples . html # with minimal tweaking # Guess the content type based on the file ' s extension . Encoding # will be ignored , although we should check for simple things like # gzip ' d or compressed files . ctype , encoding = mimetypes . guess_type (...
def redirect_output ( fileobj ) : """Redirect standard out to file ."""
old = sys . stdout sys . stdout = fileobj try : yield fileobj finally : sys . stdout = old
def print_result ( self , directory_result ) : """Print out the contents of the directory result , using ANSI color codes if supported"""
for file_name , line_results_dict in directory_result . iter_line_results_items ( ) : full_path = path . join ( directory_result . directory_path , file_name ) self . write ( full_path , 'green' ) self . write ( '\n' ) for line_number , line_results in sorted ( line_results_dict . items ( ) ) : ...
def related_objects ( self , related , objs ) : """Gets a QuerySet of current objects related to ` ` objs ` ` via the relation ` ` related ` ` ."""
from versions . models import Versionable related_model = related . related_model if issubclass ( related_model , Versionable ) : qs = related_model . objects . current else : qs = related_model . _base_manager . all ( ) return qs . using ( self . using ) . filter ( ** { "%s__in" % related . field . name : objs...
def _example_stock_quote ( quote_ctx ) : """获取批量报价 , 输出 股票名称 , 时间 , 当前价 , 开盘价 , 最高价 , 最低价 , 昨天收盘价 , 成交量 , 成交额 , 换手率 , 振幅 , 股票状态"""
stock_code_list = [ "US.AAPL" , "HK.00700" ] # subscribe " QUOTE " ret_status , ret_data = quote_ctx . subscribe ( stock_code_list , ft . SubType . QUOTE ) if ret_status != ft . RET_OK : print ( "%s %s: %s" % ( stock_code_list , "QUOTE" , ret_data ) ) exit ( ) ret_status , ret_data = quote_ctx . query_subscript...
def get_flattened_bsp_keys_from_schema ( schema ) : """Returns the flattened keys of BoundSpatialPoints in a schema : param schema : schema : return : list"""
keys = [ ] for key in schema . declared_fields . keys ( ) : field = schema . declared_fields [ key ] if isinstance ( field , mm . fields . Nested ) and isinstance ( field . schema , BoundSpatialPoint ) : keys . append ( "{}.{}" . format ( key , "position" ) ) return keys
def render_html ( html_str ) : """makes a temporary html rendering"""
import utool as ut from os . path import abspath import webbrowser try : html_str = html_str . decode ( 'utf8' ) except Exception : pass html_dpath = ut . ensure_app_resource_dir ( 'utool' , 'temp_html' ) fpath = abspath ( ut . unixjoin ( html_dpath , 'temp.html' ) ) url = 'file://' + fpath ut . writeto ( fpath...
def relation_operation ( self ) : """Returns the relation operation from the last node visited on the path , or ` None ` , if no node has been visited yet ."""
if len ( self . nodes ) > 0 : rel_op = self . nodes [ - 1 ] . relation_operation else : rel_op = None return rel_op
def send ( self , msg , timeout = None ) : """Send a message to NI - CAN . : param can . Message msg : Message to send : raises can . interfaces . nican . NicanError : If writing to transmit buffer fails . It does not wait for message to be ACKed currently ."""
arb_id = msg . arbitration_id if msg . is_extended_id : arb_id |= NC_FL_CAN_ARBID_XTD raw_msg = TxMessageStruct ( arb_id , bool ( msg . is_remote_frame ) , msg . dlc , CanData ( * msg . data ) ) nican . ncWrite ( self . handle , ctypes . sizeof ( raw_msg ) , ctypes . byref ( raw_msg ) )
def _get_operator_class_name ( task_detail_type ) : """Internal helper gets the name of the Airflow operator class . We maintain this in a map , so this method really returns the enum name , concatenated with the string " Operator " ."""
# TODO ( rajivpb ) : Rename this var correctly . task_type_to_operator_prefix_mapping = { 'pydatalab.bq.execute' : ( 'Execute' , 'google.datalab.contrib.bigquery.operators._bq_execute_operator' ) , 'pydatalab.bq.extract' : ( 'Extract' , 'google.datalab.contrib.bigquery.operators._bq_extract_operator' ) , 'pydatalab.bq....
def _build_status ( data , item ) : '''Process a status update from a docker build , updating the data structure'''
stream = item [ 'stream' ] if 'Running in' in stream : data . setdefault ( 'Intermediate_Containers' , [ ] ) . append ( stream . rstrip ( ) . split ( ) [ - 1 ] ) if 'Successfully built' in stream : data [ 'Id' ] = stream . rstrip ( ) . split ( ) [ - 1 ]
def parse ( self , raw_content , find_message_cb ) : """Function parses the RAW AS2 MDN , verifies it and extracts the processing status of the orginal AS2 message . : param raw _ content : A byte string of the received HTTP headers followed by the body . : param find _ message _ cb : A callback the must ...
status , detailed_status = None , None self . payload = parse_mime ( raw_content ) self . orig_message_id , orig_recipient = self . detect_mdn ( ) # Call the find message callback which should return a Message instance orig_message = find_message_cb ( self . orig_message_id , orig_recipient ) # Extract the headers and ...
def as_dtype ( self ) : """represent the heading as a numpy dtype"""
return np . dtype ( dict ( names = self . names , formats = [ v . dtype for v in self . attributes . values ( ) ] ) )
def validate_take_with_convert ( convert , args , kwargs ) : """If this function is called via the ' numpy ' library , the third parameter in its signature is ' axis ' , which takes either an ndarray or ' None ' , so check if the ' convert ' parameter is either an instance of ndarray or is None"""
if isinstance ( convert , ndarray ) or convert is None : args = ( convert , ) + args convert = True validate_take ( args , kwargs , max_fname_arg_count = 3 , method = 'both' ) return convert
def model ( self , ** kwargs ) : """Run the forward modeling for all frequencies . Use : py : func : ` crtomo . eitManager . eitMan . measurements ` to retrieve the resulting synthetic measurement spectra . Parameters * * kwargs : dict , optional All kwargs are directly provide to the underlying : py : ...
for key , td in self . tds . items ( ) : td . model ( ** kwargs )
def slice_yx ( r , pval , ydim = 1 ) : """slice a correlation and p - value matrix of a ( y , X ) dataset into a ( y , x _ i ) vector and ( x _ j , x _ k ) matrices Parameters r : ndarray Correlation Matrix of a ( y , X ) dataset pval : ndarray p - values ydim : int Number of target variables y , i ...
if ydim is 1 : return ( r [ 1 : , : 1 ] . reshape ( - 1 , ) , pval [ 1 : , : 1 ] . reshape ( - 1 , ) , r [ 1 : , 1 : ] , pval [ 1 : , 1 : ] ) else : return ( r [ ydim : , : ydim ] , pval [ ydim : , : ydim ] , r [ ydim : , ydim : ] , pval [ ydim : , ydim : ] )
def fit ( self ) : """fit waveforms in any domain"""
# solve for estimator of B n , p = np . shape ( self . _X ) self . _df = float ( n - p ) self . _Cx = np . linalg . pinv ( np . dot ( self . _X . T , self . _X ) ) self . _Bhat = np . dot ( np . dot ( self . _Cx , self . _X . T ) , self . _A ) self . _Y_rec = self . _compute_prediction ( self . _X )
def add_cushions ( table ) : """Add space to start and end of each string in a list of lists Parameters table : list of lists of str A table of rows of strings . For example : : [ ' dog ' , ' cat ' , ' bicycle ' ] , [ ' mouse ' , trumpet ' , ' ' ] Returns table : list of lists of str Note Each cel...
for row in range ( len ( table ) ) : for column in range ( len ( table [ row ] ) ) : lines = table [ row ] [ column ] . split ( "\n" ) for i in range ( len ( lines ) ) : if not lines [ i ] == "" : lines [ i ] = " " + lines [ i ] . rstrip ( ) + " " table [ row ] [ ...
def relative_path ( path , from_file ) : """Return the relative path of a file or directory , specified as ` ` path ` ` relative to ( the parent directory of ) ` ` from _ file ` ` . This method is intented to be called with ` ` _ _ file _ _ ` ` as second argument . The returned path is relative to the curre...
if path is None : return None abs_path_target = absolute_path ( path , from_file ) abs_path_cwd = os . getcwd ( ) if is_windows ( ) : # NOTE on Windows , if the two paths are on different drives , # the notion of relative path is not defined : # return the absolute path of the target instead . t_drive , t_tail ...
def get_as_dataframe ( worksheet , evaluate_formulas = False , ** options ) : """Returns the worksheet contents as a DataFrame . : param worksheet : the worksheet . : param evaluate _ formulas : if True , get the value of a cell after formula evaluation ; otherwise get the formula itself if present . Defaul...
all_values = _get_all_values ( worksheet , evaluate_formulas ) return TextParser ( all_values , ** options ) . read ( )
def deploy_from_linked_clone ( self , si , logger , data_holder , vcenter_data_model , reservation_id , cancellation_context ) : """deploy Cloned VM From VM Command , will deploy vm from a snapshot : param cancellation _ context : : param si : : param logger : : param data _ holder : : param vcenter _ dat...
template_resource_model = data_holder . template_resource_model return self . _deploy_a_clone ( si = si , logger = logger , app_name = data_holder . app_name , template_name = template_resource_model . vcenter_vm , other_params = template_resource_model , vcenter_data_model = vcenter_data_model , reservation_id = reser...
def pair ( self ) : """Return tuple ( address , port ) , where address is a string ( empty string if self . address ( ) is None ) and port is an integer ( zero if self . port ( ) is None ) . Mainly , this tuple is used with python socket module ( like in bind method ) : return : 2 value tuple of str and int ....
address = str ( self . __address ) if self . __address is not None else '' port = int ( self . __port ) if self . __port is not None else 0 return address , port
def getSimilarTermsForTerm ( self , term , contextId = None , posType = None , getFingerprint = None , startIndex = 0 , maxResults = 10 ) : """Get the similar terms of a given term Args : term , str : A term in the retina ( required ) contextId , int : The identifier of a context ( optional ) posType , str ...
return self . _terms . getSimilarTerms ( self . _retina , term , contextId , posType , getFingerprint , startIndex , maxResults )
def implicify_hydrogens ( self ) : """remove explicit hydrogen if possible : return : number of removed hydrogens"""
explicit = defaultdict ( list ) c = 0 for n , atom in self . atoms ( ) : if atom . element == 'H' : for m in self . neighbors ( n ) : if self . _node [ m ] . element != 'H' : explicit [ m ] . append ( n ) for n , h in explicit . items ( ) : atom = self . _node [ n ] len_h...
def _periodically_flush_profile_events ( self ) : """Drivers run this as a thread to flush profile data in the background ."""
# Note ( rkn ) : This is run on a background thread in the driver . It uses # the raylet client . This should be ok because it doesn ' t read # from the raylet client and we have the GIL here . However , # if either of those things changes , then we could run into issues . while True : # Sleep for 1 second . This will ...
def file_transaction ( * data_and_files ) : """Wrap file generation in a transaction , moving to output if finishes . The initial argument can be the world descriptive ` data ` dictionary , or a ` config ` dictionary . This is used to identify global settings for temporary directories to create transactional ...
with _flatten_plus_safe ( data_and_files ) as ( safe_names , orig_names ) : # remove any half - finished transactions map ( utils . remove_safe , safe_names ) # no need for try except block here , # because exceptions and tmp dir removal # are handled by tx _ tmpdir contextmanager if len ( safe_name...
def generate_private_key ( key_size = 2048 ) : """Generate a private key"""
return cryptography . hazmat . primitives . asymmetric . rsa . generate_private_key ( public_exponent = 65537 , key_size = key_size , backend = cryptography . hazmat . backends . default_backend ( ) , )
def get_local_ip_address ( target ) : """Get the local ip address to access one specific target ."""
ip_adr = '' try : s = socket . socket ( socket . AF_INET , socket . SOCK_DGRAM ) s . connect ( ( target , 8000 ) ) ip_adr = s . getsockname ( ) [ 0 ] s . close ( ) except : pass return ip_adr
def bounds_tree ( bounds ) : """Given a set of axis aligned bounds , create an r - tree for broad - phase collision detection Parameters bounds : ( n , dimension * 2 ) list of non - interleaved bounds for a 2D bounds tree : [ ( minx , miny , maxx , maxy ) , . . . ] Returns tree : Rtree object"""
bounds = np . asanyarray ( copy . deepcopy ( bounds ) , dtype = np . float64 ) if len ( bounds . shape ) != 2 : raise ValueError ( 'Bounds must be (n,dimension*2)!' ) dimension = bounds . shape [ 1 ] if ( dimension % 2 ) != 0 : raise ValueError ( 'Bounds must be (n,dimension*2)!' ) dimension = int ( dimension /...
def could_scope_out ( self ) : """could bubble up from current scope : return :"""
return not self . waiting_for or isinstance ( self . waiting_for , callable . EndOfStory ) or self . is_breaking_a_loop ( )
def _listen_comments ( self ) : """Start listening to comments , using a separate thread ."""
# Collect comments in a queue comments_queue = Queue ( maxsize = self . _n_jobs * 4 ) threads = [ ] # type : List [ BotQueueWorker ] try : # Create n _ jobs CommentsThreads for i in range ( self . _n_jobs ) : t = BotQueueWorker ( name = 'CommentThread-t-{}' . format ( i ) , jobs = comments_queue , target = ...
def get_initial_status_brok ( self , extra = None ) : """Create an initial status brok : param extra : some extra information to be added in the brok data : type extra : dict : return : Brok object : rtype : alignak . Brok"""
data = { 'uuid' : self . uuid } self . fill_data_brok_from ( data , 'full_status' ) if extra : data . update ( extra ) return Brok ( { 'type' : 'initial_' + self . my_type + '_status' , 'data' : data } )
def get_postgres_encoding ( python_encoding : str ) -> str : """Python to postgres encoding map ."""
encoding = normalize_encoding ( python_encoding . lower ( ) ) encoding_ = aliases . aliases [ encoding . replace ( '_' , '' , 1 ) ] . upper ( ) pg_encoding = PG_ENCODING_MAP [ encoding_ . replace ( '_' , '' ) ] return pg_encoding
def from_api_repr ( cls , resource ) : """Factory : construct instance from resource . : type resource : dict : param resource : mapping as returned from API call . : rtype : : class : ` LifecycleRuleDelete ` : returns : Instance created from resource ."""
action = resource [ "action" ] instance = cls ( action [ "storageClass" ] , _factory = True ) instance . update ( resource ) return instance
def reset_sma ( self , step ) : """Change the direction of semimajor axis growth , from outwards to inwards . Parameters step : float The current step value . Returns sma , new _ step : float The new semimajor axis length and the new step value to initiate the shrinking of the semimajor axis length ...
if self . linear_growth : sma = self . sma - step step = - step else : aux = 1. / ( 1. + step ) sma = self . sma * aux step = aux - 1. return sma , step
def safe_to_file ( folder , results ) : """Receives a list of results ( type : class : ` Clazz ` or : class : ` Function ` ) , and put them into the right files in : var : ` folder ` : param folder : Where the files should be in . : type folder : str : param results : A list of : class : ` Clazz ` or : class ...
functions = [ ] message_send_functions = [ ] clazzes = { } # " filepath " : [ Class , Class , . . . ] # split results into functions and classes for result in results : assert isinstance ( result , ( Clazz , Function ) ) if isinstance ( result , Clazz ) : import_path = get_type_path ( result . clazz ) ...
def get_issue_link_type ( self , issue_link_type_id ) : """Returns for a given issue link type id all information about this issue link type ."""
url = 'rest/api/2/issueLinkType/{issueLinkTypeId}' . format ( issueLinkTypeId = issue_link_type_id ) return self . get ( url )
def standings ( self , league_table , league ) : """Store output of league standings to a CSV file"""
headers = [ 'Position' , 'Team Name' , 'Games Played' , 'Goal For' , 'Goals Against' , 'Goal Difference' , 'Points' ] result = [ headers ] result . extend ( [ team [ 'position' ] , team [ 'team' ] [ 'name' ] , team [ 'playedGames' ] , team [ 'goalsFor' ] , team [ 'goalsAgainst' ] , team [ 'goalDifference' ] , team [ 'p...
def next_basis_label_or_index ( self , label_or_index , n = 1 ) : """Given the label or index of a basis state , return the label / index of the next basis state . More generally , if ` n ` is given , return the ` n ` ' th next basis state label / index ; ` n ` may also be negative to obtain previous basis st...
if isinstance ( label_or_index , int ) : new_index = label_or_index + n if new_index < 0 : raise IndexError ( "index %d < 0" % new_index ) if self . has_basis : if new_index >= self . dimension : raise IndexError ( "index %d out of range for basis %s" % ( new_index , self . _basi...
def save_conditions ( self ) -> None : """Save the condition files of the | Model | objects of all | Element | objects returned by | XMLInterface . elements | : > > > from hydpy . core . examples import prepare _ full _ example _ 1 > > > prepare _ full _ example _ 1 ( ) > > > import os > > > from hydpy im...
hydpy . pub . conditionmanager . currentdir = strip ( self . find ( 'outputdir' ) . text ) for element in self . master . elements : element . model . sequences . save_conditions ( ) if strip ( self . find ( 'zip' ) . text ) == 'true' : hydpy . pub . conditionmanager . zip_currentdir ( )
def get_dataset ( self ) : """Get dataset ."""
sample = self . _header . initial . players [ 0 ] . attributes . player_stats if 'mod' in sample and sample . mod [ 'id' ] > 0 : return sample . mod elif 'trickle_food' in sample and sample . trickle_food : return { 'id' : 1 , 'name' : mgz . const . MODS . get ( 1 ) , 'version' : '<5.7.2' } return { 'id' : 0 , ...
def brighten ( self ) : """Brighten the device one step ."""
brighten_command = StandardSend ( self . _address , COMMAND_LIGHT_BRIGHTEN_ONE_STEP_0X15_0X00 ) self . _send_method ( brighten_command )
def parse_conpair_logs ( self , f ) : """Go through log file looking for conpair concordance or contamination output One parser to rule them all ."""
conpair_regexes = { 'concordance_concordance' : r"Concordance: ([\d\.]+)%" , 'concordance_used_markers' : r"Based on (\d+)/\d+ markers" , 'concordance_total_markers' : r"Based on \d+/(\d+) markers" , 'concordance_marker_threshold' : r"\(coverage per marker threshold : (\d+) reads\)" , 'concordance_min_mapping_quality' ...
def push_user ( self , content , access_token , content_url = None ) : '''Push a notification to a specific pushed user . Param : content - > content of Pushed notification message access _ token - > OAuth access token content _ url ( optional ) - > enrich message with URL Returns Shipment ID as string'''
parameters = { 'app_key' : self . app_key , 'app_secret' : self . app_secret , 'access_token' : access_token } return self . _push ( content , 'user' , parameters , content_url )
def _PrintStorageInformationAsText ( self , storage_reader ) : """Prints information about the store as human - readable text . Args : storage _ reader ( StorageReader ) : storage reader ."""
table_view = views . ViewsFactory . GetTableView ( self . _views_format_type , title = 'Plaso Storage Information' ) table_view . AddRow ( [ 'Filename' , os . path . basename ( self . _storage_file_path ) ] ) table_view . AddRow ( [ 'Format version' , storage_reader . format_version ] ) table_view . AddRow ( [ 'Seriali...
def create ( self , unique_name = values . unset , ttl = values . unset , collection_ttl = values . unset ) : """Create a new SyncListInstance : param unicode unique _ name : Human - readable name for this list : param unicode ttl : Alias for collection _ ttl : param unicode collection _ ttl : Time - to - liv...
data = values . of ( { 'UniqueName' : unique_name , 'Ttl' : ttl , 'CollectionTtl' : collection_ttl , } ) payload = self . _version . create ( 'POST' , self . _uri , data = data , ) return SyncListInstance ( self . _version , payload , service_sid = self . _solution [ 'service_sid' ] , )
def subnets ( self , prefixlen_diff = 1 , new_prefix = None ) : """The subnets which join to make the current subnet . In the case that self contains only one IP ( self . _ prefixlen = = 32 for IPv4 or self . _ prefixlen = = 128 for IPv6 ) , yield an iterator with just ourself . Args : prefixlen _ diff : ...
if self . _prefixlen == self . _max_prefixlen : yield self return if new_prefix is not None : if new_prefix < self . _prefixlen : raise ValueError ( 'new prefix must be longer' ) if prefixlen_diff != 1 : raise ValueError ( 'cannot set prefixlen_diff and new_prefix' ) prefixlen_diff =...
def clean_cache ( self , section = None ) : """Cleans the cache of this cache object ."""
self . remove_all_locks ( ) if section is not None and "/" in section : raise ValueError ( "invalid section '{0}'" . format ( section ) ) if section is not None : path = os . path . join ( self . _full_base , section ) else : path = self . _full_base if not os . path . exists ( path ) : return shutil . ...
def pacl_term ( DiamTube , ConcClay , ConcAl , ConcNatOrgMat , NatOrgMat , coag , material , RatioHeightDiameter ) : """Return the fraction of the surface area that is covered with coagulant that is not covered with humic acid . : param DiamTube : Diameter of the dosing tube : type Diamtube : float : param ...
return ( gamma_coag ( ConcClay , ConcAl , coag , material , DiamTube , RatioHeightDiameter ) * ( 1 - gamma_humic_acid_to_coag ( ConcAl , ConcNatOrgMat , NatOrgMat , coag ) ) )
def _prepare_proxy ( self , conn ) : """Establish tunnel connection early , because otherwise httplib would improperly set Host : header to proxy ' s IP : port ."""
conn . set_tunnel ( self . _proxy_host , self . port , self . proxy_headers ) conn . connect ( )
def relookup ( self , pattern ) : """Dictionary lookup with a regular expression . Return pairs whose key matches pattern ."""
key = re . compile ( pattern ) return filter ( lambda x : key . match ( x [ 0 ] ) , self . data . items ( ) )
def register ( self , dtype ) : """Parameters dtype : ExtensionDtype"""
if not issubclass ( dtype , ( PandasExtensionDtype , ExtensionDtype ) ) : raise ValueError ( "can only register pandas extension dtypes" ) self . dtypes . append ( dtype )
def make_proc_name ( self , subtitle ) : """获取进程名称 : param subtitle : : return :"""
proc_name = '[%s:%s %s] %s' % ( constants . NAME , subtitle , self . name , ' ' . join ( [ sys . executable ] + sys . argv ) ) return proc_name
def get_linkage ( self , line ) : """Get the linkage information from a LINK entry PDB line ."""
conf1 , id1 , chain1 , pos1 = line [ 16 ] . strip ( ) , line [ 17 : 20 ] . strip ( ) , line [ 21 ] . strip ( ) , int ( line [ 22 : 26 ] ) conf2 , id2 , chain2 , pos2 = line [ 46 ] . strip ( ) , line [ 47 : 50 ] . strip ( ) , line [ 51 ] . strip ( ) , int ( line [ 52 : 56 ] ) return self . covlinkage ( id1 = id1 , chain...