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def benchmark_multi ( optimizer ) : """Benchmark an optimizer configuration on multiple functions ."""
# Get our benchmark stats all_stats = benchmark . compare ( optimizer , PROBLEMS , runs = 100 ) return benchmark . aggregate ( all_stats )
def _get_repos ( self ) : """Gets a list of all the installed repositories in this server ."""
result = { } for xmlpath in self . installed : repo = RepositorySettings ( self , xmlpath ) result [ repo . name . lower ( ) ] = repo return result
def _display_stream ( normalized_data , stream ) : """print stream message from docker - py stream ."""
try : stream . write ( normalized_data [ 'stream' ] ) except UnicodeEncodeError : stream . write ( normalized_data [ 'stream' ] . encode ( "utf-8" ) )
def random_transform ( self , sample , seed = None ) : """Randomly augment a single image tensor . # Arguments sample : 3D or 4D tensor , single sample . seed : random seed . # Returns A randomly transformed version of the input ( same shape ) ."""
img_row_axis = self . row_axis - 1 img_col_axis = self . col_axis - 1 img_channel_axis = self . channel_axis - 1 transform_matrix = self . get_random_transform_matrix ( sample , seed ) if transform_matrix is not None : h , w = sample . shape [ img_row_axis ] , sample . shape [ img_col_axis ] transform_matrix = ...
def get_forwarding_address ( destination_address , api_key , callback_url = None , coin_symbol = 'btc' ) : """Give a destination address and return an input address that will automatically forward to the destination address . See get _ forwarding _ address _ details if you also need the forwarding address ID . ...
assert api_key , 'api_key required' resp_dict = get_forwarding_address_details ( destination_address = destination_address , api_key = api_key , callback_url = callback_url , coin_symbol = coin_symbol ) return resp_dict [ 'input_address' ]
def handle_error ( self , message : str , e : mastodon . MastodonError ) -> OutputRecord : """Handle error while trying to do something ."""
self . lerror ( f"Got an error! {e}" ) # Handle errors if we know how . try : code = e [ 0 ] [ "code" ] if code in self . handled_errors : self . handled_errors [ code ] else : pass except Exception : pass return TootRecord ( error = e )
def make_temp ( suffix = "" , prefix = "tmp" , dir = None ) : """Creates a temporary file with a closed stream and deletes it when done . : return : A contextmanager retrieving the file path ."""
temporary = tempfile . mkstemp ( suffix = suffix , prefix = prefix , dir = dir ) os . close ( temporary [ 0 ] ) try : yield temporary [ 1 ] finally : os . remove ( temporary [ 1 ] )
def verify_sns_subscription_current ( self , subscription_arn , topic_name , function_arn ) : # type : ( str , str , str ) - > bool """Verify a subscription arn matches the topic and function name . Given a subscription arn , verify that the associated topic name and function arn match up to the parameters pass...
sns_client = self . _client ( 'sns' ) try : attributes = sns_client . get_subscription_attributes ( SubscriptionArn = subscription_arn ) [ 'Attributes' ] return ( # Splitting on ' : ' is safe because topic names can ' t have # a ' : ' char . attributes [ 'TopicArn' ] . rsplit ( ':' , 1 ) [ 1 ] == topic_...
def _points_within_distance ( self , pnt1 , pnt2 ) : """Returns true if lat / lon points are within given distance in metres ."""
if self . _get_distance ( pnt1 , pnt2 ) <= self . distance : return True return False
def reflect_well ( value , bounds ) : """Given some boundaries , reflects the value until it falls within both boundaries . This is done iteratively , reflecting left off of the ` boundaries . max ` , then right off of the ` boundaries . min ` , etc . Parameters value : float The value to apply the reflec...
while value not in bounds : value = bounds . _max . reflect_left ( value ) value = bounds . _min . reflect_right ( value ) return value
def _handle_authn_response ( self , context , internal_response , idp ) : """See super class satosa . frontends . base . FrontendModule : type context : satosa . context . Context : type internal _ response : satosa . internal . InternalData : type idp : saml . server . Server : param context : The current ...
request_state = self . load_state ( context . state ) resp_args = request_state [ "resp_args" ] sp_entity_id = resp_args [ "sp_entity_id" ] internal_response . attributes = self . _filter_attributes ( idp , internal_response , context ) ava = self . converter . from_internal ( self . attribute_profile , internal_respon...
def push_filters ( self , new_filters ) : """Add a filter to the tokenizer chain ."""
t = self . tokenizer for f in new_filters : t = f ( t ) self . tokenizer = t
def set_xtick_suffix ( self , suffix ) : """Set the suffix for the ticks of the x - axis . : param suffix : string added after each tick . If the value is ` degree ` or ` precent ` the corresponding symbols will be added ."""
if suffix == 'degree' : suffix = r'^\circ' elif suffix == 'percent' : suffix = r'\%' self . ticks [ 'xsuffix' ] = suffix
def parse_compound_file ( f , context = None ) : """Iterate over the compound entries in the given file"""
f . readline ( ) # Skip header for lineno , row in enumerate ( csv . reader ( f , delimiter = '\t' ) ) : compound_id , names , formula = row [ : 3 ] names = ( decode_name ( name ) for name in names . split ( ',<br>' ) ) # ModelSEED sometimes uses an asterisk and number at # the end of formulas . This se...
def etype ( self ) -> Tuple [ str , str ] : '''Returns the expression ' s type .'''
if self . _expr [ 0 ] in [ 'number' , 'boolean' ] : return ( 'constant' , str ( type ( self . _expr [ 1 ] ) ) ) elif self . _expr [ 0 ] == 'pvar_expr' : return ( 'pvar' , self . _expr [ 1 ] [ 0 ] ) elif self . _expr [ 0 ] == 'randomvar' : return ( 'randomvar' , self . _expr [ 1 ] [ 0 ] ) elif self . _expr [...
def cnn_model ( logits = False , input_ph = None , img_rows = 28 , img_cols = 28 , channels = 1 , nb_filters = 64 , nb_classes = 10 ) : """Defines a CNN model using Keras sequential model : param logits : If set to False , returns a Keras model , otherwise will also return logits tensor : param input _ ph : T...
model = Sequential ( ) # Define the layers successively ( convolution layers are version dependent ) if tf . keras . backend . image_data_format ( ) == 'channels_first' : input_shape = ( channels , img_rows , img_cols ) else : assert tf . keras . backend . image_data_format ( ) == 'channels_last' input_shap...
def extract_isosurface ( pvol ) : """Extracts the largest isosurface from a volume . The following example illustrates one of the usage scenarios : . . code - block : : python : linenos : from geomdl import construct , multi from geomdl . visualization import VisMPL # Assuming that " myvol " variable st...
if pvol . pdimension != 3 : raise GeomdlException ( "The input should be a spline volume" ) if len ( pvol ) != 1 : raise GeomdlException ( "Can only operate on single spline volumes" ) # Extract surfaces from the parametric volume isosrf = extract_surfaces ( pvol ) # Return the isosurface return isosrf [ 'uv' ]...
def build_ownership_map ( table , key_from_row , value_from_row ) : """Builds a dict mapping to lists of OwnershipPeriods , from a db table ."""
return _build_ownership_map_from_rows ( sa . select ( table . c ) . execute ( ) . fetchall ( ) , key_from_row , value_from_row , )
def compile_for_aexec ( source , filename = "<aexec>" , mode = "single" , dont_imply_dedent = False , local = { } ) : """Return a list of ( coroutine object , abstract base tree ) ."""
flags = ast . PyCF_ONLY_AST if dont_imply_dedent : flags |= codeop . PyCF_DONT_IMPLY_DEDENT if compat . PY35 : # Avoid a syntax error by wrapping code with ` async def ` indented = '\n' . join ( line and ' ' * 4 + line for line in source . split ( '\n' ) ) coroutine = CORO_DEF + '\n' + indented + '\n' i...
def current_line ( self ) : '''Get the text of the current source line as a string , with a trailing newline character'''
if self . is_optimized_out ( ) : return '(frame information optimized out)' with open ( self . filename ( ) , 'r' ) as f : all_lines = f . readlines ( ) # Convert from 1 - based current _ line _ num to 0 - based list offset : return all_lines [ self . current_line_num ( ) - 1 ]
def create_layout ( graph , graphviz_prog = DEFAULT_GRAPHVIZ_PROG ) : """Return { node : position } for given graph"""
graphviz_layout = graphutils . graphviz_layout ( graph , prog = graphviz_prog ) # print ( ' GRAPHIZ LAYOUT : ' , graphviz _ layout ) layout = { k : ( int ( x // 10 ) , int ( y // 10 ) ) for k , ( x , y ) in graphviz_layout . items ( ) } # apply an offset for layouts to get all position > = 0 max_x = max ( layout . valu...
def update_available_item_relationships ( app ) : """Update directive option _ spec with custom relationships defined in configuration file ` ` traceability _ relationships ` ` variable . Both keys ( relationships ) and values ( reverse relationships ) are added . This handler should be called upon builder in...
env = app . builder . env env . relationships = { } for rel in list ( app . config . traceability_relationships . keys ( ) ) : env . relationships [ rel ] = app . config . traceability_relationships [ rel ] env . relationships [ app . config . traceability_relationships [ rel ] ] = rel for rel in sorted ( list ...
def zip_cluster ( data , k , init = None , max_iters = 100 ) : """Performs hard EM clustering using the zero - inflated Poisson distribution . Args : data ( array ) : A 2d array - genes x cells k ( int ) : Number of clusters init ( array , optional ) : Initial centers - genes x k array . Default : None , us...
genes , cells = data . shape init , new_assignments = kmeans_pp ( data + eps , k , centers = init ) centers = np . copy ( init ) M = np . zeros ( centers . shape ) assignments = new_assignments for c in range ( k ) : centers [ : , c ] , M [ : , c ] = zip_fit_params_mle ( data [ : , assignments == c ] ) for it in ra...
def _set_vlan_name ( self , v , load = False ) : """Setter method for vlan _ name , mapped from YANG variable / interface _ vlan / interface / vlan / vlan _ name ( string ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ vlan _ name is considered as a private method ....
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = RestrictedClassType ( base_type = unicode , restriction_dict = { 'length' : [ u'1 .. 32' ] } ) , is_leaf = True , yang_name = "vlan-name" , rest_name = "name" , parent = self , path_helper = self . _path_helper , extmethods =...
def chat_post_message ( self , text , room_id = None , channel = None , ** kwargs ) : """Posts a new chat message ."""
if room_id : return self . __call_api_post ( 'chat.postMessage' , roomId = room_id , text = text , kwargs = kwargs ) elif channel : return self . __call_api_post ( 'chat.postMessage' , channel = channel , text = text , kwargs = kwargs ) else : raise RocketMissingParamException ( 'roomId or channel required'...
def export_default_instruments ( target_folder , source_folder = None , raise_errors = False , verbose = True ) : """tries to instantiate all the instruments that are imported in / instruments / _ _ init _ _ . py and saves instruments that could be instantiate into a . b2 file in the folder path Args : target...
print ( 'export_def_instr called' ) instruments_to_load = get_classes_in_folder ( source_folder , Instrument , verbose = True ) print ( 'instruments to load:' ) print ( instruments_to_load ) if verbose : print ( ( 'attempt to load {:d} instruments: ' . format ( len ( instruments_to_load ) ) ) ) loaded_instruments ,...
def find ( fn , record ) : """Apply a function on the record and return the corresponding new record : param fn : a function : param record : a dictionary : returns : a dictionary > > > find ( max , { ' Terry ' : 30 , ' Graham ' : 35 , ' John ' : 27 } ) { ' Graham ' : 35}"""
values_result = fn ( record . values ( ) ) keys_result = [ k for k , v in record . items ( ) if v == values_result ] return { keys_result [ 0 ] : values_result }
def watching ( w , watch , max_count = None , clear = True ) : """> > > len ( list ( watching ( True , 1 , 0 ) ) ) > > > len ( list ( watching ( True , 1 , 1 ) ) ) > > > len ( list ( watching ( True , None , 0 ) ) )"""
if w and not watch : watch = 2 if watch and clear : click . clear ( ) yield 0 if max_count is not None and max_count < 1 : return counter = 1 while watch and counter <= ( max_count or counter ) : time . sleep ( watch ) counter += 1 if clear : click . clear ( ) yield 0
def play ( events , speed_factor = 1.0 ) : """Plays a sequence of recorded events , maintaining the relative time intervals . If speed _ factor is < = 0 then the actions are replayed as fast as the OS allows . Pairs well with ` record ( ) ` . Note : the current keyboard state is cleared at the beginning and r...
state = stash_state ( ) last_time = None for event in events : if speed_factor > 0 and last_time is not None : _time . sleep ( ( event . time - last_time ) / speed_factor ) last_time = event . time key = event . scan_code or event . name press ( key ) if event . event_type == KEY_DOWN else relea...
def setup_application ( self ) : """Allows us to use method , injected as dependency earlier to set up argparser before autocompletion / running the app ."""
# figure out precise method name , specific to this use name = 'configure_%s_app' % self . parent . name # call generic set up method getattr ( self . method , 'configure_app' , self . _no_op_setup ) ( self , self . parser ) # call specific set up method getattr ( self . method , name , self . _no_op_setup ) ( self , s...
def _parse_accented_syllable ( unparsed_syllable ) : """Return the syllable and tone of an accented Pinyin syllable . Any accented vowels are returned without their accents . Implements the following algorithm : 1 . If the syllable has an accent mark , convert that vowel to a regular vowel and add the tone ...
if unparsed_syllable [ 0 ] == '\u00B7' : # Special case for middle dot tone mark . return unparsed_syllable [ 1 : ] , '5' for character in unparsed_syllable : if character in _ACCENTED_VOWELS : vowel , tone = _accented_vowel_to_numbered ( character ) return unparsed_syllable . replace ( characte...
def _set_redistribute_bgp ( self , v , load = False ) : """Setter method for redistribute _ bgp , mapped from YANG variable / rbridge _ id / ipv6 / router / ospf / redistribute / redistribute _ bgp ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ redistribu...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = redistribute_bgp . redistribute_bgp , is_container = 'container' , presence = True , yang_name = "redistribute-bgp" , rest_name = "bgp" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , r...
def extract ( self , obj , bypass_ref = False ) : """Extract subelement from obj , according to current token . : param obj : the object source : param bypass _ ref : disable JSON Reference errors"""
try : if isinstance ( obj , Mapping ) : if not bypass_ref and '$ref' in obj : raise RefError ( obj , 'presence of a $ref member' ) obj = self . extract_mapping ( obj ) elif isinstance ( obj , Sequence ) and not isinstance ( obj , string_types ) : obj = self . extract_sequence...
def _cs_disassemble_one ( self , data , address ) : """Disassemble the data into an instruction in string form ."""
disasm = list ( self . _disassembler . disasm ( bytes ( data ) , address ) ) # TODO : Improve this check . if len ( disasm ) > 0 : return disasm [ 0 ] else : cs_arm = Cs ( CS_ARCH_ARM , CS_MODE_ARM ) cs_arm . detail = True disasm = list ( cs_arm . disasm ( bytes ( data ) , address ) ) if len ( disas...
def expr2truthtable ( expr ) : """Convert an expression into a truth table ."""
inputs = [ ttvar ( v . names , v . indices ) for v in expr . inputs ] return truthtable ( inputs , expr . iter_image ( ) )
def solve_dp ( self , lam ) : '''Solves the Graph - fused double Pareto ( non - convex , local optima only )'''
cur_converge = self . converge + 1 step = 0 # Get an initial estimate using the GFL self . solve_gfl ( lam ) beta2 = np . copy ( self . beta ) while cur_converge > self . converge and step < self . max_dp_steps : # Weight each edge differently u = lam / ( 1 + np . abs ( self . beta [ self . trails [ : : 2 ] ] - sel...
def maturity_date ( self , value ) : """The date on which the asset matures and no longer holds value : param value : : return :"""
self . _maturity_date = parse ( value ) . date ( ) if isinstance ( value , type_check ) else value
def authenticate ( user = None ) : # noqa : E501 """Authenticate Authenticate with the API # noqa : E501 : param user : The user authentication object . : type user : dict | bytes : rtype : AuthResponse"""
if connexion . request . is_json : user = UserAuth . from_dict ( connexion . request . get_json ( ) ) # noqa : E501 return 'do some magic!'
def setup_structure ( self , structure ) : """Sets up the structure for which the coordination geometries have to be identified . The structure is analyzed with the space group analyzer and a refined structure is used : param structure : A pymatgen Structure : param"""
self . initial_structure = structure . copy ( ) if self . structure_refinement == self . STRUCTURE_REFINEMENT_NONE : self . structure = structure . copy ( ) self . spg_analyzer = None self . symmetrized_structure = None else : self . spg_analyzer = SpacegroupAnalyzer ( self . initial_structure , symprec...
def _to_dict ( self ) : """Return a json dictionary representing this model ."""
_dict = { } if hasattr ( self , 'folders' ) and self . folders is not None : _dict [ 'folders' ] = [ x . _to_dict ( ) for x in self . folders ] if hasattr ( self , 'objects' ) and self . objects is not None : _dict [ 'objects' ] = [ x . _to_dict ( ) for x in self . objects ] if hasattr ( self , 'site_collection...
def urljoin ( end_with_slash , * args ) : """> > > HelperURI . urljoin ( False , * ( ' http : / / 127.0.0.1:8000 ' , ' dumb _ upload ' ) ) ' http : / / 127.0.0.1:8000 / dumb _ upload ' > > > HelperURI . urljoin ( True , * ( ' http : / / 127.0.0.1:8000 ' , ' dumb _ upload ' ) ) ' http : / / 127.0.0.1:8000 / du...
last = args [ 0 ] for i in args [ 1 : ] : last = '%s/%s' % ( last . strip ( '/' ) , i . strip ( '/' ) ) if end_with_slash : if last [ - 1 ] != '/' : last += '/' return last
def Squeeze ( a , squeeze_dims ) : """Squeeze op , i . e . removes singular axes ."""
if not squeeze_dims : squeeze_dims = list ( range ( len ( a . shape ) ) ) slices = [ ( 0 if ( dim == 1 and i in squeeze_dims ) else slice ( None ) ) for i , dim in enumerate ( a . shape ) ] return np . copy ( a ) [ slices ] ,
def indent ( self , node , dirty = True ) : """Indent an item . Does nothing if the target has subitems . Args : node ( gkeepapi . node . ListItem ) : Item to indent . dirty ( bool ) : Whether this node should be marked dirty ."""
if node . subitems : return self . _subitems [ node . id ] = node node . super_list_item_id = self . id node . parent_item = self if dirty : node . touch ( True )
def iter_tags ( self , number = - 1 , etag = None ) : """Iterates over tags on this repository . : param int number : ( optional ) , return up to at most number tags . Default : - 1 returns all available tags . : param str etag : ( optional ) , ETag from a previous request to the same endpoint : returns :...
url = self . _build_url ( 'tags' , base_url = self . _api ) return self . _iter ( int ( number ) , url , RepoTag , etag = etag )
def import_attr ( path ) : """Given a a Python dotted path to a variable in a module , imports the module and returns the variable in it ."""
module_path , attr_name = path . rsplit ( "." , 1 ) return getattr ( import_module ( module_path ) , attr_name )
def close ( self ) : """Close the document controller . This method must be called to shut down the document controller . There are several paths by which it can be called , though . * User quits application via menu item . The menu item will call back to Application . exit which will close each document co...
assert self . __closed == False self . __closed = True self . finish_periodic ( ) # required to finish periodic operations during tests # dialogs for weak_dialog in self . __dialogs : dialog = weak_dialog ( ) if dialog : try : dialog . request_close ( ) except Exception as e : ...
def get_data ( self ) : """attempt to read measurements file in working directory ."""
meas_file = os . path . join ( self . WD , 'magic_measurements.txt' ) if not os . path . isfile ( meas_file ) : print ( "-I- No magic_measurements.txt file" ) return { } try : meas_data , file_type = pmag . magic_read ( meas_file ) except IOError : print ( "-I- No magic_measurements.txt file" ) retu...
def enzyme ( ) : """Returns list of Enzyme Commission numbers by query paramaters tags : - Query functions parameters : - name : ec _ number in : query type : string required : false description : ' Enzyme Commission number ' default : ' 1.1.1.1' - name : hgnc _ symbol in : query type : stri...
allowed_str_args = [ 'hgnc_symbol' , 'ec_number' ] allowed_int_args = [ 'limit' , 'hgnc_identifier' ] args = get_args ( request_args = request . args , allowed_int_args = allowed_int_args , allowed_str_args = allowed_str_args ) return jsonify ( query . enzyme ( ** args ) )
def get_target_n ( self ) : '''getter'''
if isinstance ( self . __target_n , int ) is False : raise TypeError ( "The type of __target_n must be int." ) return self . __target_n
def sweHousesLon ( jd , lat , lon , hsys ) : """Returns lists with house and angle longitudes ."""
hsys = SWE_HOUSESYS [ hsys ] hlist , ascmc = swisseph . houses ( jd , lat , lon , hsys ) angles = [ ascmc [ 0 ] , ascmc [ 1 ] , angle . norm ( ascmc [ 0 ] + 180 ) , angle . norm ( ascmc [ 1 ] + 180 ) ] return ( hlist , angles )
def generated_tag_data ( tags ) : """Convert : obj : ` dict ` to S3 Tag list . Args : tags ( dict ) : Dictonary of tag key and tag value passed . Returns : list : List of dictionaries ."""
generated_tags = [ ] for key , value in tags . items ( ) : generated_tags . append ( { 'Key' : key , 'Value' : value , } ) return generated_tags
def create ( cls , entry ) : """Factory that creates an bot config from an entry in INSTALLED _ APPS ."""
# trading _ bots . example . bot . ExampleBot try : # If import _ module succeeds , entry is a path to a bot module , # which may specify a bot class with a default _ bot attribute . # Otherwise , entry is a path to a bot class or an error . module = import_module ( entry ) except ImportError : # Track that importi...
def parseGithubImportPath ( self , path ) : """Definition : github . com / < project > / < repo >"""
parts = path . split ( "/" ) if len ( parts ) < 3 : raise ValueError ( "Import path %s not in github.com/<project>/<repo> form" % path ) repo = { } repo [ "prefix" ] = "/" . join ( parts [ : 3 ] ) repo [ "signature" ] = { "provider" : "github" , "username" : parts [ 1 ] , "project" : parts [ 2 ] } return repo
def parse_qsl ( qs , keep_blank_values = False , strict_parsing = False , encoding = 'utf-8' , errors = 'replace' ) : """Parse a query given as a string argument . Arguments : qs : percent - encoded query string to be parsed keep _ blank _ values : flag indicating whether blank values in percent - encoded q...
qs , _coerce_result = _coerce_args ( qs ) pairs = [ s2 for s1 in qs . split ( '&' ) for s2 in s1 . split ( ';' ) ] r = [ ] for name_value in pairs : if not name_value and not strict_parsing : continue nv = name_value . split ( '=' , 1 ) if len ( nv ) != 2 : if strict_parsing : ra...
def _fake_references ( self , namespace , ** params ) : """Implements a mock WBEM server responder for : meth : ` ~ pywbem . WBEMConnection . References `"""
rc = None if params [ 'ResultClass' ] is None else params [ 'ResultClass' ] . classname role = params [ 'Role' ] obj_name = params [ 'ObjectName' ] classname = obj_name . classname pl = params [ 'PropertyList' ] ico = params [ 'IncludeClassOrigin' ] iq = params [ 'IncludeQualifiers' ] if isinstance ( obj_name , CIMClas...
def makeUnicodeMapFromSources ( self ) : """Create a dict with glyphName - > unicode value pairs using the data in the sources . If all master glyphs have the same unicode value this value will be used in the map . If master glyphs have conflicting value , a warning will be printed , no value will be used ....
values = { } for locationName , ( source , loc ) in self . sources . items ( ) : # this will be expensive in large fonts for glyph in source : if glyph . unicodes is not None : if glyph . name not in values : values [ glyph . name ] = { } for u in glyph . unicodes : ...
def execute_sql ( self , sql , params = None , param_types = None , query_mode = None , partition = None , retry = google . api_core . gapic_v1 . method . DEFAULT , timeout = google . api_core . gapic_v1 . method . DEFAULT , ) : """Perform an ` ` ExecuteStreamingSql ` ` API request . : type sql : str : param sq...
if self . _read_request_count > 0 : if not self . _multi_use : raise ValueError ( "Cannot re-use single-use snapshot." ) if self . _transaction_id is None : raise ValueError ( "Transaction ID pending." ) if params is not None : if param_types is None : raise ValueError ( "Specify 'pa...
def check_list_type ( objects , allowed_type , name , allow_none = True ) : """Verify that objects in list are of the allowed type or raise TypeError . Args : objects : The list of objects to check . allowed _ type : The allowed type of items in ' settings ' . name : Name of the list of objects , added to t...
if objects is None : if not allow_none : raise TypeError ( '%s is None, which is not allowed.' % name ) return objects if not isinstance ( objects , ( tuple , list ) ) : raise TypeError ( '%s is not a list.' % name ) if not all ( isinstance ( i , allowed_type ) for i in objects ) : type_list = s...
def get_contact_formatted_email ( self , contact ) : """Returns a string with the formatted email for the given contact"""
contact_name = contact . Title ( ) contact_email = contact . getEmailAddress ( ) return self . get_formatted_email ( ( contact_name , contact_email ) )
def parse_cdhit_clstr_file ( lines ) : """Returns a list of list of sequence ids representing clusters"""
clusters = [ ] curr_cluster = [ ] for l in lines : if l . startswith ( '>Cluster' ) : if not curr_cluster : continue clusters . append ( curr_cluster ) curr_cluster = [ ] else : curr_cluster . append ( clean_cluster_seq_id ( l . split ( ) [ 2 ] ) ) if curr_cluster : ...
def read_csv ( fname ) : """Read a csv file into a DataAccessObject : param fname : filename"""
values = defaultdict ( list ) with open ( fname ) as f : reader = csv . DictReader ( f ) for row in reader : for ( k , v ) in row . items ( ) : values [ k ] . append ( v ) npvalues = { k : np . array ( values [ k ] ) for k in values . keys ( ) } for k in npvalues . keys ( ) : for datatyp...
def polygon_from_points ( points ) : """Constructs a numpy - compatible polygon from a page representation ."""
polygon = [ ] for pair in points . split ( " " ) : x_y = pair . split ( "," ) polygon . append ( [ float ( x_y [ 0 ] ) , float ( x_y [ 1 ] ) ] ) return polygon
def _generate_question ( self ) : """Generate a random arithmetic question This method randomly generates a simple addition , subtraction , or multiplication question with two integers between 1 and 10 , and then returns both question ( formatted as a string ) and answer ."""
x = random . randint ( 1 , 10 ) y = random . randint ( 1 , 10 ) operator = random . choice ( ( '+' , '-' , '*' , ) ) if operator == '+' : answer = x + y elif operator == '-' : # Ensure we ' ll get a non - negative answer if x < y : x , y = y , x answer = x - y else : # Multiplication is hard , make ...
def query_columns ( conn , query , name = None ) : """Lightweight query to retrieve column list of select query . Notes Strongly urged to specify a cursor name for performance ."""
with conn . cursor ( name ) as cursor : cursor . itersize = 1 cursor . execute ( query ) cursor . fetchmany ( 0 ) column_names = [ column . name for column in cursor . description ] return column_names
def main_group ( ctx , verbose , quiet , access_token , config ) : """This is the command line interface to Mapbox web services . Mapbox web services require an access token . Your token is shown on the https : / / www . mapbox . com / studio / account / tokens / page when you are logged in . The token can be...
ctx . obj = { } config = config or os . path . join ( click . get_app_dir ( 'mapbox' ) , 'mapbox.ini' ) cfg = read_config ( config ) if cfg : ctx . obj [ 'config_file' ] = config ctx . obj [ 'cfg' ] = cfg ctx . default_map = cfg verbosity = ( os . environ . get ( 'MAPBOX_VERBOSE' ) or ctx . lookup_default ( 'mapbox...
def configurar_interface_de_rede ( self , configuracao ) : """Sobrepõe : meth : ` ~ satcfe . base . FuncoesSAT . configurar _ interface _ de _ rede ` . : return : Uma resposta SAT padrão . : rtype : satcfe . resposta . padrao . RespostaSAT"""
resp = self . _http_post ( 'configurarinterfacederede' , configuracao = configuracao . documento ( ) ) conteudo = resp . json ( ) return RespostaSAT . configurar_interface_de_rede ( conteudo . get ( 'retorno' ) )
def run ( command , products = None , working_directory = '.' , force_local = False , stderr = True , quiet = False ) : '''wrapper to run external programs : command : list containing command and parameters ( formatted the same as subprocess ; must contain only strings ) : products : string or list of files t...
with run_in ( working_directory ) : if products : if isinstance ( products , basestring ) : products = [ products ] if all ( [ os . path . exists ( x ) for x in products ] ) : return False command = flatten ( command ) command = [ str ( x ) for x in command ] quie...
def _get_token ( self , request , refresh_token = False ) : """Extract a token from a request object ."""
if self . config . cookie_set ( ) : token = self . _get_token_from_cookies ( request , refresh_token ) if token : return token else : if self . config . cookie_strict ( ) : raise exceptions . MissingAuthorizationCookie ( ) if self . config . query_string_set ( ) : token = sel...
def move_item_down ( self , item ) : """Move an item down in the list . Essentially swap it with the item below it . : param item : The item to be moved ."""
next_iter = self . _next_iter_for ( item ) if next_iter is not None : self . model . swap ( self . _iter_for ( item ) , next_iter )
def pwm ( host , seq , m1 , m2 , m3 , m4 ) : """Sends control values directly to the engines , overriding control loops . Parameters : seq - - sequence number m1 - - Integer : front left command m2 - - Integer : front right command m3 - - Integer : back right command m4 - - Integer : back left command""...
at ( host , 'PWM' , seq , [ m1 , m2 , m3 , m4 ] )
def runCommands ( self , commands , args ) : """Given a list of commands , runCommands executes them . This is one of the two key methods of MapExecutor ."""
errorCounter = 0 if args . list : print '\n' . join ( commands ) else : # Each command is executed sequentially : for command in commands : process = subprocess . Popen ( command , stdout = subprocess . PIPE , stderr = subprocess . PIPE , shell = True ) stream = process . communicate ( ) ...
def consulta ( self , endereco , primeiro = False , uf = None , localidade = None , tipo = None , numero = None ) : """Consulta site e retorna lista de resultados"""
if uf is None : url = 'consultaEnderecoAction.do' data = { 'relaxation' : endereco . encode ( 'ISO-8859-1' ) , 'TipoCep' : 'ALL' , 'semelhante' : 'N' , 'cfm' : 1 , 'Metodo' : 'listaLogradouro' , 'TipoConsulta' : 'relaxation' , 'StartRow' : '1' , 'EndRow' : '10' } else : url = 'consultaLogradouroAction.do' ...
def jtag_send ( self , tms , tdi , num_bits ) : """Sends data via JTAG . Sends data via JTAG on the rising clock edge , TCK . At on each rising clock edge , on bit is transferred in from TDI and out to TDO . The clock uses the TMS to step through the standard JTAG state machine . Args : self ( JLink ) : t...
if not util . is_natural ( num_bits ) or num_bits <= 0 or num_bits > 32 : raise ValueError ( 'Number of bits must be >= 1 and <= 32.' ) self . _dll . JLINKARM_StoreBits ( tms , tdi , num_bits ) return None
def get_port_profile_status_input_port_profile_status ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) get_port_profile_status = ET . Element ( "get_port_profile_status" ) config = get_port_profile_status input = ET . SubElement ( get_port_profile_status , "input" ) port_profile_status = ET . SubElement ( input , "port-profile-status" ) port_profile_status . text = kwargs . pop ( 'port...
def _final_data ( self ) : """Returns A list of tuples representing rows from the datatable ' s index and final column , sorted accordingly ."""
dtbl = self . datatable objs = object_session ( self ) if isinstance ( dtbl , Table ) : return objs . query ( dtbl . c . indx , dtbl . c . final ) . all ( ) else : raise Exception ( "Symbol has no datatable, likely need to cache first." )
def save_card ( self , card , cache = False ) : """Save the given card to the database . This calls each save event hook on the save string before commiting it to the database ."""
if cache : self . cache_card ( card ) carddict = card . save ( ) with sqlite3 . connect ( self . dbname ) as carddb : carddb . execute ( "DELETE from CARDS where code = ?" , ( carddict [ "code" ] , ) ) carddb . execute ( "INSERT INTO CARDS VALUES(?, ?, ?, ?, ?)" , [ carddict [ key ] if isinstance ( carddict...
def get_params ( self ) : """Get parameters . : return : enabled , size , chunk _ delay , start _ delay"""
return self . enabled , self . size , self . chunk_delay , self . start_delay
def act ( self ) : """Carries out the action associated with Stop button"""
g = get_root ( self ) . globals g . clog . debug ( 'Stop pressed' ) # Stop exposure meter # do this first , so timer doesn ' t also try to enable idle mode g . info . timer . stop ( ) def stop_in_background ( ) : try : self . stopping = True if execCommand ( g , 'abort' ) : self . stoppe...
def function ( self , x , y , Rs , theta_Rs , e1 , e2 , center_x = 0 , center_y = 0 ) : """returns double integral of NFW profile"""
phi_G , q = param_util . ellipticity2phi_q ( e1 , e2 ) x_shift = x - center_x y_shift = y - center_y cos_phi = np . cos ( phi_G ) sin_phi = np . sin ( phi_G ) e = min ( abs ( 1. - q ) , 0.99 ) xt1 = ( cos_phi * x_shift + sin_phi * y_shift ) * np . sqrt ( 1 - e ) xt2 = ( - sin_phi * x_shift + cos_phi * y_shift ) * np . ...
def add_register_user ( self , username , first_name , last_name , email , password = "" , hashed_password = "" ) : """Add a registration request for the user . : rtype : RegisterUser"""
register_user = self . registeruser_model ( ) register_user . username = username register_user . email = email register_user . first_name = first_name register_user . last_name = last_name if hashed_password : register_user . password = hashed_password else : register_user . password = generate_password_hash (...
def tis2hw ( size : Union [ int , TensorImageSize ] ) -> Tuple [ int , int ] : "Convert ` int ` or ` TensorImageSize ` to ( height , width ) of an image ."
if type ( size ) is str : raise RuntimeError ( "Expected size to be an int or a tuple, got a string." ) return listify ( size , 2 ) if isinstance ( size , int ) else listify ( size [ - 2 : ] , 2 )
def resolve_link ( self , snow_record , field_to_resolve , ** kparams ) : """Get the info from the link and return a SnowRecord ."""
try : link = snow_record . links ( ) [ field_to_resolve ] except KeyError as e : return SnowRecord . NotFound ( self , snow_record . _table_name , "Could not find field %s in record" % field_to_resolve , [ snow_record , field_to_resolve , self ] ) if kparams : link += ( '&' , '?' ) [ urlparse ( link ) . que...
def mirror ( self , axes = 'x' ) : """Generates a symmetry of the Polyhedron respect global axes . : param axes : ' x ' , ' y ' , ' z ' , ' xy ' , ' xz ' , ' yz ' . . . : type axes : str : returns : ` ` pyny . Polyhedron ` `"""
polygon = np . array ( [ [ 0 , 0 ] , [ 0 , 1 ] , [ 1 , 1 ] ] ) space = Space ( Place ( polygon , polyhedra = self ) ) return space . mirror ( axes , inplace = False ) [ 0 ] . polyhedra [ 0 ]
def get_user_identity ( cls , instance_config ) : """Parse user identity out of init _ config To guarantee a uniquely identifiable user , expects { " user " : { " name " : " my _ username " , " password " : " my _ password " , " domain " : { " id " : " my _ domain _ id " }"""
user = instance_config . get ( 'user' ) if not ( user and user . get ( 'name' ) and user . get ( 'password' ) and user . get ( "domain" ) and user . get ( "domain" ) . get ( "id" ) ) : raise IncompleteIdentity ( ) identity = { "methods" : [ 'password' ] , "password" : { "user" : user } } return identity
def _prtstr ( self , obj , dashes ) : """Print object information using a namedtuple and a format pattern ."""
self . prt . write ( '{DASHES:{N}}' . format ( DASHES = self . fmt_dashes . format ( DASHES = dashes , ID = obj . item_id ) , N = self . dash_len ) ) self . prt . write ( "{INFO}\n" . format ( INFO = str ( obj ) ) )
def revert ( self , strip = 0 , root = None ) : """apply patch in reverse order"""
reverted = copy . deepcopy ( self ) reverted . _reverse ( ) return reverted . apply ( strip , root )
def iodp_samples ( samp_file , output_samp_file = None , output_dir_path = '.' , input_dir_path = '' , data_model_num = 3 ) : """Convert IODP samples data file into MagIC samples file . Default is to overwrite samples . txt in your working directory . Parameters samp _ file : str path to IODP sample file to...
samp_file_name = "samples.txt" sample_alternatives = "sample_alternatives" method_codes = "method_codes" sample_name = "sample" site_name = "site" expedition_name = "expedition_name" location_name = "location" citation_name = "citation" dip = "dip" azimuth = "azimuth" core_depth = "core_depth" composite_depth = "compos...
def _getLocalWhen ( self , date_from , date_to = None ) : """Returns a string describing when the event occurs ( in the local time zone ) ."""
dateFrom , timeFrom = getLocalDateAndTime ( date_from , self . time_from , self . tz , dt . time . min ) if date_to is not None : dateTo , timeTo = getLocalDateAndTime ( date_to , self . time_to , self . tz ) else : if self . time_to is not None : dateTo , timeTo = getLocalDateAndTime ( date_from , self...
def keywords ( self ) : """Distinct keywords ( ` ` name ` ` in : class : ` . models . Keyword ` ) : returns : all distinct keywords : rtype : list [ str ]"""
return [ x [ 0 ] for x in self . session . query ( models . Keyword . name ) . all ( ) ]
def style ( self ) : """Returns a default Style ."""
style = mapnik . Style ( ) rule = mapnik . Rule ( ) self . _symbolizer = self . symbolizer ( ) rule . symbols . append ( self . _symbolizer ) style . rules . append ( rule ) return style
def get ( self , action , params = None , headers = None ) : """Makes a GET request"""
return self . request ( make_url ( self . endpoint , action ) , method = 'GET' , data = params , headers = headers )
def getMetadata ( L ) : """Get metadata from a LiPD data in memory | Example | m = lipd . getMetadata ( D [ " Africa - ColdAirCave . Sundqvist . 2013 " ] ) : param dict L : One LiPD record : return dict d : LiPD record ( metadata only )"""
_l = { } try : # Create a copy . Do not affect the original data . _l = copy . deepcopy ( L ) # Remove values fields _l = rm_values_fields ( _l ) except Exception as e : # Input likely not formatted correctly , though other problems can occur . print ( "Error: Unable to get data. Please check that input...
def show_top_losses ( self , k : int , max_len : int = 70 ) -> None : """Create a tabulation showing the first ` k ` texts in top _ losses along with their prediction , actual , loss , and probability of actual class . ` max _ len ` is the maximum number of tokens displayed ."""
from IPython . display import display , HTML items = [ ] tl_val , tl_idx = self . top_losses ( ) for i , idx in enumerate ( tl_idx ) : if k <= 0 : break k -= 1 tx , cl = self . data . dl ( self . ds_type ) . dataset [ idx ] cl = cl . data classes = self . data . classes txt = ' ' . join ...
def connect ( self ) : """Connects to RabbitMQ and starts listening"""
logger . info ( "Connecting to RabbitMQ on {broker_url}..." . format ( broker_url = self . broker_url ) ) super ( RabbitMQSubscriber , self ) . connect ( ) q = Queue ( exchange = self . exchange , exclusive = True , durable = False ) self . queue = q ( self . connection . default_channel ) self . queue . declare ( ) se...
def plot_annotation ( ann_samp , n_annot , ann_sym , signal , n_sig , fs , time_units , ann_style , axes ) : "Plot annotations , possibly overlaid on signals"
# Extend annotation style if necesary if len ( ann_style ) == 1 : ann_style = n_annot * ann_style # Figure out downsample factor for time indices if time_units == 'samples' : downsample_factor = 1 else : downsample_factor = { 'seconds' : float ( fs ) , 'minutes' : float ( fs ) * 60 , 'hours' : float ( fs ) ...
def do_json_valid ( self , params ) : """\x1b [1mNAME \x1b [0m json _ valid - Checks znodes for valid JSON \x1b [1mSYNOPSIS \x1b [0m json _ valid < path > [ recursive ] \x1b [1mOPTIONS \x1b [0m * recursive : recurse to all children ( default : false ) \x1b [1mEXAMPLES \x1b [0m > json _ valid / some / ...
def check_valid ( path , print_path ) : result = "no" value , _ = self . _zk . get ( path ) if value is not None : try : x = json . loads ( value ) result = "yes" except ValueError : pass if print_path : self . show_output ( "%s: %s." , os . pa...
def _proxy ( self ) : """Generate an instance context for the instance , the context is capable of performing various actions . All instance actions are proxied to the context : returns : WebhookContext for this WebhookInstance : rtype : twilio . rest . messaging . v1 . session . webhook . WebhookContext"""
if self . _context is None : self . _context = WebhookContext ( self . _version , session_sid = self . _solution [ 'session_sid' ] , sid = self . _solution [ 'sid' ] , ) return self . _context
def parse_arguments ( filters , arguments , modern = False ) : """Return a dict of parameters . Take a list of filters and for each try to get the corresponding value in arguments or a default value . Then check that value ' s type . The @ modern parameter indicates how the arguments should be interpreted ....
params = DotDict ( ) for i in filters : count = len ( i ) param = None if count <= 1 : param = arguments . get ( i [ 0 ] ) else : param = arguments . get ( i [ 0 ] , i [ 1 ] ) # proceed and do the type checking if count >= 3 : types = i [ 2 ] if modern : ...
def query ( self , s = None , p = None , o = None ) : """Return all triples that satisfy the given expression . You may specify all or none of the fields ( s , p , and o ) . For instance , if I wanted to query for all the people who live in Kansas , I might write : . . code - block : : python for triple in ...
start , end = self . keys_for_query ( s , p , o ) if end is None : if start in self . _z : yield { 's' : s , 'p' : p , 'o' : o } else : raise StopIteration else : for key in self . _z . range_by_lex ( '[' + start , '[' + end ) : keys , p1 , p2 , p3 = decode ( key ) . split ( '::' ) ...
def RelaxNGValidate ( self , rng ) : """Use RelaxNG schema to validate the document as it is processed . Activation is only possible before the first Read ( ) . If @ rng is None , then RelaxNG schema validation is deactivated ."""
ret = libxml2mod . xmlTextReaderRelaxNGValidate ( self . _o , rng ) return ret