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def _request ( self , service , ** parameters ) : """request builder"""
urlformat = "{baseurl}/{service}?{parameters}&format=json" url = urlformat . format ( baseurl = API_BASE_URL , service = service , parameters = "&" . join ( [ "{}={}" . format ( key , value ) for key , value in parameters . items ( ) ] ) ) if datetime . now ( ) > self . _token_expire_date : self . update_token ( ) ...
def populate_user ( self , request , sociallogin , data ) : """Hook that can be used to further populate the user instance . For convenience , we populate several common fields . Note that the user instance being populated represents a suggested User instance that represents the social user that is in the p...
username = data . get ( 'username' ) first_name = data . get ( 'first_name' ) last_name = data . get ( 'last_name' ) email = data . get ( 'email' ) name = data . get ( 'name' ) user = sociallogin . user user_username ( user , username or '' ) user_email ( user , valid_email_or_none ( email ) or '' ) name_parts = ( name...
def add_email_address ( self , email , hidden = None ) : """Add email address . Args : : param email : email of the author . : type email : string : param hidden : if email is public or not . : type hidden : boolean"""
existing_emails = get_value ( self . obj , 'email_addresses' , [ ] ) found_email = next ( ( existing_email for existing_email in existing_emails if existing_email . get ( 'value' ) == email ) , None ) if found_email is None : new_email = { 'value' : email } if hidden is not None : new_email [ 'hidden' ]...
def get_tmuxinator_dir ( ) : """Return tmuxinator configuration directory . Checks for ` ` TMUXINATOR _ CONFIG ` ` environmental variable . Returns str : absolute path to tmuxinator config directory See Also : meth : ` tmuxp . config . import _ tmuxinator `"""
if 'TMUXINATOR_CONFIG' in os . environ : return os . path . expanduser ( os . environ [ 'TMUXINATOR_CONFIG' ] ) return os . path . expanduser ( '~/.tmuxinator/' )
def env ( self ) : """Dict of all environment variables that will be run with this command ."""
env_vars = os . environ . copy ( ) env_vars . update ( self . _env ) new_path = ":" . join ( self . _paths + [ env_vars [ "PATH" ] ] if "PATH" in env_vars else [ ] + self . _paths ) env_vars [ "PATH" ] = new_path for env_var in self . _env_drop : if env_var in env_vars : del env_vars [ env_var ] return env_...
def script ( vm_ ) : '''Return the script deployment object'''
script_name = config . get_cloud_config_value ( 'script' , vm_ , __opts__ ) if not script_name : script_name = 'bootstrap-salt' return salt . utils . cloud . os_script ( script_name , vm_ , __opts__ , salt . utils . cloud . salt_config_to_yaml ( salt . utils . cloud . minion_config ( __opts__ , vm_ ) ) )
def solarcalcs ( self ) : """Solar Calculation Mutates RSM , BEM , and UCM objects based on following parameters : UCM # Urban Canopy - Building Energy Model object BEM # Building Energy Model object simTime # Simulation time bbject RSM # Rural Site & Vertical Diffusion Model Object forc # Forcing objec...
self . dir = self . forc . dir # Direct sunlight ( perpendicular to the sun ' s ray ) self . dif = self . forc . dif # Diffuse sunlight if self . dir + self . dif > 0. : self . logger . debug ( "{} Solar radiation > 0" . format ( __name__ ) ) # calculate zenith tangent , and critOrient solar angles self . s...
def close ( self ) : """Stops the read thread , waits for it to exit cleanly , then closes the underlying serial port"""
self . alive = False self . rxThread . join ( ) self . serial . close ( )
def execute ( self ) : """Execute the actions necessary to perform a ` molecule lint ` and returns None . : return : None"""
self . print_info ( ) linters = [ l for l in [ self . _config . lint , self . _config . verifier . lint , self . _config . provisioner . lint , ] if l ] for l in linters : l . execute ( )
def per_chat_id_in ( s , types = 'all' ) : """: param s : a list or set of chat id : param types : ` ` all ` ` or a list of chat types ( ` ` private ` ` , ` ` group ` ` , ` ` channel ` ` ) : return : a seeder function that returns the chat id only if the chat id is in ` ` s ` ` and chat type is in ` ` t...
return _wrap_none ( lambda msg : msg [ 'chat' ] [ 'id' ] if ( types == 'all' or msg [ 'chat' ] [ 'type' ] in types ) and msg [ 'chat' ] [ 'id' ] in s else None )
def fw_int_to_hex ( * args ) : """Pack integers into hex string . Use little - endian and unsigned int format ."""
return binascii . hexlify ( struct . pack ( '<{}H' . format ( len ( args ) ) , * args ) ) . decode ( 'utf-8' )
def main ( ) : """Paperboy entry point - parse the arguments and run a command"""
parser = argparse . ArgumentParser ( description = 'Paperboy deep learning launcher' ) parser . add_argument ( 'config' , metavar = 'FILENAME' , help = 'Configuration file for the run' ) parser . add_argument ( 'command' , metavar = 'COMMAND' , help = 'A command to run' ) parser . add_argument ( 'varargs' , nargs = '*'...
def _gather_variables ( stack_def ) : """Merges context provided & stack defined variables . If multiple stacks have a variable with the same name , we can specify the value for a specific stack by passing in the variable name as : ` < stack name > : : < variable name > ` . This variable value will only be us...
variable_values = copy . deepcopy ( stack_def . variables or { } ) return [ Variable ( k , v ) for k , v in variable_values . items ( ) ]
def _call_member ( obj , name , failfast = True , * args , ** kwargs ) : """Calls the specified method , property or attribute of the given object Parameters obj : object The object that will be used name : str Name of method , property or attribute failfast : bool If True , will raise an exception wh...
try : attr = getattr ( obj , name ) except AttributeError as e : if failfast : raise e else : return None try : if inspect . ismethod ( attr ) : # call function return attr ( * args , ** kwargs ) elif isinstance ( attr , property ) : # call property return obj . attr ...
def wait_for_array ( self , wait_for , timeout_ms ) : """Waits for one or more events to happen . Scriptable version of : py : func : ` wait _ for ` . in wait _ for of type : class : ` ProcessWaitForFlag ` Specifies what to wait for ; see : py : class : ` ProcessWaitForFlag ` for more information . in tim...
if not isinstance ( wait_for , list ) : raise TypeError ( "wait_for can only be an instance of type list" ) for a in wait_for [ : 10 ] : if not isinstance ( a , ProcessWaitForFlag ) : raise TypeError ( "array can only contain objects of type ProcessWaitForFlag" ) if not isinstance ( timeout_ms , baseint...
def get_obj_url ( request , obj ) : """Returns object URL if current logged user has permissions to see the object"""
if ( is_callable ( getattr ( obj , 'get_absolute_url' , None ) ) and ( not hasattr ( obj , 'can_see_edit_link' ) or ( is_callable ( getattr ( obj , 'can_see_edit_link' , None ) ) and obj . can_see_edit_link ( request ) ) ) ) : return call_method_with_unknown_input ( obj . get_absolute_url , request = request ) else...
def tryMatch ( self , textToMatchObject ) : """Try to find themselves in the text . Returns ( contextStack , count , matchedRule ) or ( contextStack , None , None ) if doesn ' t match"""
# Skip if column doesn ' t match if self . column != - 1 and self . column != textToMatchObject . currentColumnIndex : return None if self . firstNonSpace and ( not textToMatchObject . firstNonSpace ) : return None return self . _tryMatch ( textToMatchObject )
def get ( self , path , params , ** options ) : """Parses GET request options and dispatches a request"""
return self . request ( 'get' , path , params = params , ** options )
def interface_by_ipaddr ( self , ipaddr ) : '''Given an IP address , return the interface that ' owns ' this address'''
ipaddr = IPAddr ( ipaddr ) for devname , iface in self . _devinfo . items ( ) : if iface . ipaddr == ipaddr : return iface raise KeyError ( "No device has IP address {}" . format ( ipaddr ) )
def _apply_fd_rule ( self , step_ratio , sequence , steps ) : """Return derivative estimates of fun at x0 for a sequence of stepsizes h Member variables used"""
f_del , h , original_shape = self . _vstack ( sequence , steps ) fd_rule = self . _get_finite_difference_rule ( step_ratio ) ne = h . shape [ 0 ] nr = fd_rule . size - 1 _assert ( nr < ne , 'num_steps ({0:d}) must be larger than ' '({1:d}) n + order - 1 = {2:d} + {3:d} -1' ' ({4:s})' . format ( ne , nr + 1 , self . n ...
def vt2esofspy ( vesseltree , outputfilename = "tracer.txt" , axisorder = [ 0 , 1 , 2 ] ) : """exports vesseltree to esofspy format : param vesseltree : filename or vesseltree dictionary structure : param outputfilename : output file name : param axisorder : order of axis can be specified with this option :...
if ( type ( vesseltree ) == str ) and os . path . isfile ( vesseltree ) : import io3d vt = io3d . misc . obj_from_file ( vesseltree ) else : vt = vesseltree print ( vt [ 'general' ] ) print ( vt . keys ( ) ) vtgm = vt [ 'graph' ] [ 'microstructure' ] lines = [ ] vs = vt [ 'general' ] [ 'voxel_size_mm' ] sh ...
def new_messages_handler ( stream ) : """Saves a new chat message to db and distributes msg to connected users"""
# TODO : handle no user found exception while True : packet = yield from stream . get ( ) session_id = packet . get ( 'session_key' ) msg = packet . get ( 'message' ) username_opponent = packet . get ( 'username' ) if session_id and msg and username_opponent : user_owner = get_user_from_sess...
def selectSQL ( conn , sql , args = None ) : '''sql : a select statement args : if sql has parameters defined with either % s or % ( key ) s then args should be a either list or dict of parameter values respectively . returns a tuple of rows , each of which is a tuple .'''
with doCursor ( conn ) as cursor : cursor . execute ( sql , args ) results = cursor . fetchall ( ) return results
def render_indirect ( self , buffer , mode = None , count = - 1 , * , first = 0 ) -> None : '''The render primitive ( mode ) must be the same as the input primitive of the GeometryShader . The draw commands are 5 integers : ( count , instanceCount , firstIndex , baseVertex , baseInstance ) . Args : buffer (...
if mode is None : mode = TRIANGLES self . mglo . render_indirect ( buffer . mglo , mode , count , first )
def read_sex_problems ( file_name ) : """Reads the sex problem file . : param file _ name : the name of the file containing sex problems . : type file _ name : str : returns : a : py : class : ` frozenset ` containing samples with sex problem . If there is no ` ` file _ name ` ` ( * i . e . * is ` ` None ` ...
if file_name is None : return frozenset ( ) problems = None with open ( file_name , 'r' ) as input_file : header_index = dict ( [ ( col_name , i ) for i , col_name in enumerate ( input_file . readline ( ) . rstrip ( "\r\n" ) . split ( "\t" ) ) ] ) if "IID" not in header_index : msg = "{}: no column ...
def normalizeGlyphWidth ( value ) : """Normalizes glyph width . * * * value * * must be a : ref : ` type - int - float ` . * Returned value is the same type as the input value ."""
if not isinstance ( value , ( int , float ) ) : raise TypeError ( "Glyph width must be an :ref:`type-int-float`, not %s." % type ( value ) . __name__ ) return value
def library_directories ( self ) -> typing . List [ str ] : """The list of directories to all of the library locations"""
def listify ( value ) : return [ value ] if isinstance ( value , str ) else list ( value ) # If this is a project running remotely remove external library # folders as the remote shared libraries folder will contain all # of the necessary dependencies is_local_project = not self . is_remote_project folders = [ f fo...
def sendm ( self_p , dest ) : """Send message to destination socket as part of a multipart sequence , and destroy the message after sending it successfully . Note that after a zmsg _ sendm , you must call zmsg _ send or another method that sends a final message part . If the message has no frames , sends noth...
return lib . zmsg_sendm ( byref ( zmsg_p . from_param ( self_p ) ) , dest )
def remove_masquerade ( zone = None , permanent = True ) : '''Remove masquerade on a zone . If zone is omitted , default zone will be used . . . versionadded : : 2015.8.0 CLI Example : . . code - block : : bash salt ' * ' firewalld . remove _ masquerade To remove masquerade on a specific zone . . code...
if zone : cmd = '--zone={0} --remove-masquerade' . format ( zone ) else : cmd = '--remove-masquerade' if permanent : cmd += ' --permanent' return __firewall_cmd ( cmd )
def acquisition_function_withGradients ( self , x ) : """Returns the acquisition function and its its gradient at x ."""
aqu_x = self . acquisition_function ( x ) aqu_x_grad = self . d_acquisition_function ( x ) return aqu_x , aqu_x_grad
def find ( self , _id , instance = None ) : """Find Args : _ id ( str ) : instance id or binding Id Keyword Arguments : instance ( AtlasServiceInstance . Instance ) : Existing instance Returns : AtlasServiceInstance . Instance or AtlasServiceBinding . Binding : An instance or binding ."""
if instance is None : # We are looking for an instance return self . service_instance . find ( _id ) else : # We are looking for a binding return self . service_binding . find ( _id , instance )
def remove ( text , what , count = None , strip = False ) : '''Like ` ` replace ` ` , where ` ` new ` ` replacement is an empty string .'''
return replace ( text , what , '' , count = count , strip = strip )
def OnText ( self , event = None ) : "text event"
try : if event . GetString ( ) != '' : self . __CheckValid ( event . GetString ( ) ) except : pass event . Skip ( )
def main ( self ) : """Run all the methods required for pipeline outputs"""
self . fasta_records ( ) self . fasta_stats ( ) self . find_largest_contig ( ) self . find_genome_length ( ) self . find_num_contigs ( ) self . find_n50 ( ) self . perform_pilon ( ) self . clear_attributes ( )
def handle ( self ) : """Creates a child process that is fully controlled by this request handler , and serves data to and from it via the protocol handler ."""
pid , fd = pty . fork ( ) if pid : protocol = TelnetServerProtocolHandler ( self . request , fd ) protocol . handle ( ) else : self . execute ( )
def intcomma ( value ) : """Borrowed from django . contrib . humanize Converts an integer to a string containing commas every three digits . For example , 3000 becomes ' 3,000 ' and 45000 becomes ' 45,000 ' ."""
orig = str ( value ) new = re . sub ( "^(-?\d+)(\d{3})" , '\g<1>,\g<2>' , orig ) if orig == new : return new else : return intcomma ( new )
def save ( self , model ) : """Attach a model instance to the parent models . : param model : The model instance to attach : type model : Model : rtype : Model"""
model . set_attribute ( self . get_plain_morph_type ( ) , self . _morph_class ) return super ( MorphOneOrMany , self ) . save ( model )
def load_checkpoint ( with_local = False ) : """Load latest check point . Parameters with _ local : bool , optional whether the checkpoint contains local model Returns tuple : tuple if with _ local : return ( version , gobal _ model , local _ model ) else return ( version , gobal _ model ) if return...
gptr = ctypes . POINTER ( ctypes . c_char ) ( ) global_len = ctypes . c_ulong ( ) if with_local : lptr = ctypes . POINTER ( ctypes . c_char ) ( ) local_len = ctypes . c_ulong ( ) version = _LIB . RabitLoadCheckPoint ( ctypes . byref ( gptr ) , ctypes . byref ( global_len ) , ctypes . byref ( lptr ) , ctypes...
def commit ( config , no_verify ) : """Commit the current branch with all files ."""
repo = config . repo active_branch = repo . active_branch if active_branch . name == "master" : error_out ( "Can't commit when on the master branch. " "You really ought to do work in branches." ) now = time . time ( ) def count_files_in_directory ( directory ) : count = 0 for root , _ , files in os . walk (...
def index ( ) : """This is not served anywhere in the web application . It is used explicitly in the context of generating static files since flask - frozen requires url _ for ' s to crawl content . url _ for ' s are not used with result . show _ result directly and are instead dynamically generated through...
if current_app . config [ 'ARA_PLAYBOOK_OVERRIDE' ] is not None : override = current_app . config [ 'ARA_PLAYBOOK_OVERRIDE' ] results = ( models . TaskResult . query . join ( models . Task ) . filter ( models . Task . playbook_id . in_ ( override ) ) ) else : results = models . TaskResult . query . all ( ) ...
def appendhdf5 ( table , source , where = None , name = None ) : """As : func : ` petl . io . hdf5 . tohdf5 ` but don ' t truncate the target table before loading ."""
with _get_hdf5_table ( source , where , name , mode = 'a' ) as h5table : # load the data _insert ( table , h5table )
def get_wu_settings ( ) : '''Get current Windows Update settings . Returns : dict : A dictionary of Windows Update settings : Featured Updates : Boolean value that indicates whether to display notifications for featured updates . Group Policy Required ( Read - only ) : Boolean value that indicates whe...
ret = { } day = [ 'Every Day' , 'Sunday' , 'Monday' , 'Tuesday' , 'Wednesday' , 'Thursday' , 'Friday' , 'Saturday' ] # Initialize the PyCom system with salt . utils . winapi . Com ( ) : # Create an AutoUpdate object obj_au = win32com . client . Dispatch ( 'Microsoft.Update.AutoUpdate' ) # Create an AutoUpdate Setti...
def create_hooks ( config : dict , model : AbstractModel , dataset : AbstractDataset , output_dir : str ) -> Iterable [ AbstractHook ] : """Create hooks specified in ` ` config [ ' hooks ' ] ` ` list . Hook config entries may be one of the following types : . . code - block : : yaml : caption : A hook with de...
logging . info ( 'Creating hooks' ) hooks = [ ] if 'hooks' in config : for hook_config in config [ 'hooks' ] : if isinstance ( hook_config , str ) : hook_config = { hook_config : { } } assert len ( hook_config ) == 1 , 'Hook configuration must have exactly one key (fully qualified name)....
def teardown_logical_port_connectivity ( self , context , port_db , hosting_device_id ) : """Removes connectivity for a logical port . Unplugs the corresponding data interface from the VM ."""
if port_db is None or port_db . get ( 'id' ) is None : LOG . warning ( "Port id is None! Cannot remove port " "from hosting_device:%s" , hosting_device_id ) return hosting_port_id = port_db . hosting_info . hosting_port . id try : self . _dev_mgr . svc_vm_mgr . interface_detach ( hosting_device_id , hosting...
def _handle_version ( self , data ) : """Handles received version data . : param data : Version string to parse : type data : string"""
_ , version_string = data . split ( ':' ) version_parts = version_string . split ( ',' ) self . serial_number = version_parts [ 0 ] self . version_number = version_parts [ 1 ] self . version_flags = version_parts [ 2 ]
def article ( self ) : """| Comment : Id of the associated article , if present"""
if self . api and self . article_id : return self . api . _get_article ( self . article_id )
def load_state ( cls , path : PathOrStr , state : dict ) -> 'LabelList' : "Create a ` LabelList ` from ` state ` ."
x = state [ 'x_cls' ] ( [ ] , path = path , processor = state [ 'x_proc' ] , ignore_empty = True ) y = state [ 'y_cls' ] ( [ ] , path = path , processor = state [ 'y_proc' ] , ignore_empty = True ) res = cls ( x , y , tfms = state [ 'tfms' ] , tfm_y = state [ 'tfm_y' ] , ** state [ 'tfmargs' ] ) . process ( ) if state ...
def load_json ( path : str , encoding : str = "utf-8" ) -> HistogramBase : """Load histogram from a JSON file ."""
with open ( path , "r" , encoding = encoding ) as f : text = f . read ( ) return parse_json ( text )
def _containing_contigs ( self , hits ) : '''Given a list of hits , all with same query , returns a set of the contigs containing that query'''
return { hit . ref_name for hit in hits if self . _contains ( hit ) }
def iter ( self , match = "*" , count = 1000 ) : """Iterates the set of keys in : prop : key _ prefix in : prop : _ client @ match : # str pattern to match after the : prop : key _ prefix @ count : the user specified the amount of work that should be done at every call in order to retrieve elements from the c...
replace_this = self . key_prefix + ":" for key in self . _client . scan_iter ( match = "{}:{}" . format ( self . key_prefix , match ) , count = count ) : yield self . _decode ( key ) . replace ( replace_this , "" , 1 )
def to_string ( self , format_str ) : '''Output lat , lon coordinates as string in chosen format Inputs : format ( str ) - A string of the form A % B % C where A , B and C are identifiers . Unknown identifiers ( e . g . ' ' , ' , ' or ' _ ' will be inserted as separators in a position corresponding to the p...
format2value = { 'H' : self . get_hemisphere ( ) , 'M' : abs ( self . decimal_minute ) , 'm' : int ( abs ( self . minute ) ) , 'd' : int ( self . degree ) , 'D' : self . decimal_degree , 'S' : abs ( self . second ) } format_elements = format_str . split ( '%' ) coord_list = [ str ( format2value . get ( element , elemen...
def write_message ( self , msg , timeout = None ) : """Write an arbitrary message ( of one of the types above ) . For the host side implementation , this will only ever be a DataMessage , but it ' s implemented generically enough here that you could use FilesyncTransport to implement the device side if you wa...
replace_dict = { 'command' : self . CMD_TO_WIRE [ msg . command ] } if msg . has_data : # Swap out data for the data length for the wire . data = msg [ - 1 ] replace_dict [ msg . _fields [ - 1 ] ] = len ( data ) self . stream . write ( struct . pack ( msg . struct_format , * msg . _replace ( ** replace_dict ) )...
def _screen ( self , include = True , ** kwargs ) : """Filters a DataFrame for columns that contain the given strings . Parameters : include : bool If False then it will exclude items that match the given filters . This is the same as passing a regex ^ keyword kwargs : Key value pairs that indicate th...
df = self . copy ( ) for k , v in list ( kwargs . items ( ) ) : v = [ v ] if type ( v ) != list else v if include : df = df [ df [ k ] . str . contains ( '|' . join ( v ) , flags = re . IGNORECASE ) . fillna ( False ) ] else : df = df [ df [ k ] . str . contains ( '|' . join ( v ) , flags = ...
def reset ( self , required = False ) : """Perform a reset and check for presence pulse . : param bool required : require presence pulse"""
reset = self . _ow . reset ( ) if required and reset : raise OneWireError ( "No presence pulse found. Check devices and wiring." ) return not reset
def _report_line_to_dict ( cls , line ) : '''Takes report line string as input . Returns a dict of column name - > value in line'''
data = line . split ( '\t' ) if len ( data ) != len ( report . columns ) : return None d = dict ( zip ( report . columns , data ) ) for key in report . int_columns : try : d [ key ] = int ( d [ key ] ) except : assert d [ key ] == '.' for key in report . float_columns : try : d [...
def _get_id ( self ) : """Construct and return the identifier"""
return '' . join ( map ( str , filter ( is_not_None , [ self . Prefix , self . Name ] ) ) )
def create ( tournament , name , ** params ) : """Add a participant to a tournament ."""
params . update ( { "name" : name } ) return api . fetch_and_parse ( "POST" , "tournaments/%s/participants" % tournament , "participant" , ** params )
def search_channels ( self , query , limit = 25 , offset = 0 ) : """Search for channels and return them : param query : the query string : type query : : class : ` str ` : param limit : maximum number of results : type limit : : class : ` int ` : param offset : offset for pagination : type offset : : cl...
r = self . kraken_request ( 'GET' , 'search/channels' , params = { 'query' : query , 'limit' : limit , 'offset' : offset } ) return models . Channel . wrap_search ( r )
def process_alarms ( self , snmp_data ) : "Build list with active alarms"
self . active_alarms = [ ] for i in range ( 0 , len ( self . models [ self . modem_type ] [ 'alarms' ] ) ) : if bool ( int ( snmp_data [ i ] ) ) == True : self . active_alarms . append ( self . models [ self . modem_type ] [ 'alarms' ] [ i ] )
def num_strips ( self ) : """The number of strips a device with the : attr : ` ~ libinput . constant . DeviceCapability . TABLET _ PAD ` capability provides . Returns : int : The number of strips or 0 if the device has no strips . Raises : AttributeError"""
num = self . _libinput . libinput_device_tablet_pad_get_num_strips ( self . _handle ) if num < 0 : raise AttributeError ( 'This device is not a tablet pad device' ) return num
def _get_summary ( self , text , ** kwargs ) : """Render out just the summary"""
card = cards . extract_card ( text , kwargs , self . search_path ) return flask . Markup ( ( card . description or '' ) . strip ( ) )
def args ( self ) -> str : """Provides arguments for the command ."""
return '{}{}{}{}{}' . format ( to_ascii_hex ( self . _index , 2 ) , to_ascii_hex ( self . _group_number , 2 ) , to_ascii_hex ( self . _unit_number , 2 ) , to_ascii_hex ( int ( self . _enable_status ) , 4 ) , to_ascii_hex ( int ( self . _switches ) , 4 ) )
def _prepare_sphx_glr_dirs ( gallery_conf , srcdir ) : """Creates necessary folders for sphinx _ gallery files"""
examples_dirs = gallery_conf [ 'examples_dirs' ] gallery_dirs = gallery_conf [ 'gallery_dirs' ] if not isinstance ( examples_dirs , list ) : examples_dirs = [ examples_dirs ] if not isinstance ( gallery_dirs , list ) : gallery_dirs = [ gallery_dirs ] if bool ( gallery_conf [ 'backreferences_dir' ] ) : backr...
def next ( self ) : """Returns the first YAML document in stream . . . warning : : Assume that the YAML document are closed explicitely with the sentinel ' . . . '"""
in_doc , lines , doc_tag = None , [ ] , None for i , line in enumerate ( self . stream ) : self . linepos += 1 # print ( i , line ) if line . startswith ( "---" ) : # Include only lines in the form : # " - - - ! tag " # Other lines are spurious . in_doc = False l = line [ 3 : ] . str...
def cell_fate ( data , groupby = 'clusters' , disconnected_groups = None , self_transitions = False , n_neighbors = None , copy = False ) : """Computes individual cell endpoints Arguments data : : class : ` ~ anndata . AnnData ` Annotated data matrix . groupby : ` str ` ( default : ` ' clusters ' ` ) Key ...
adata = data . copy ( ) if copy else data logg . info ( 'computing cell fates' , r = True ) n_neighbors = 10 if n_neighbors is None else n_neighbors _adata = adata . copy ( ) vgraph = VelocityGraph ( _adata , n_neighbors = n_neighbors , approx = True , n_recurse_neighbors = 1 ) vgraph . compute_cosines ( ) _adata . uns...
def runAddAnnouncement ( self , flaskrequest ) : """Takes a flask request from the frontend and attempts to parse into an AnnouncePeerRequest . If successful , it will log the announcement to the ` announcement ` table with some other metadata gathered from the request ."""
announcement = { } # We want to parse the request ourselves to collect a little more # data about it . try : requestData = protocol . fromJson ( flaskrequest . get_data ( ) , protocol . AnnouncePeerRequest ) announcement [ 'hostname' ] = flaskrequest . host_url announcement [ 'remote_addr' ] = flaskrequest ...
def makeSyncAnglePacket ( info ) : """Write sync angle information to servos . info = [ [ ID , angle ] , [ ID , angle ] , . . . ]"""
addr = le ( xl320 . XL320_GOAL_POSITION ) data = [ ] # since all servo angles have the same register addr ( XL320 _ GOAL _ POSITION ) # and data size ( 2 ) , a sinc packet is smart choice # compare bulk vs sync for the same commands : # bulk = 94 bytes # sync = 50 bytes data . append ( addr [ 0 ] ) # LSB data . append ...
def require_linklocal ( handler ) : """Ensure the decorated is only called if the request is linklocal . The host ip address should be in the X - Host - IP header ( provided by nginx )"""
@ functools . wraps ( handler ) async def decorated ( request : web . Request ) -> web . Response : ipaddr_str = request . headers . get ( 'x-host-ip' ) invalid_req_data = { 'error' : 'bad-interface' , 'message' : f'The endpoint {request.url} can only be used from ' 'local connections' } if not ipaddr_str :...
def delete_collection_validating_webhook_configuration ( self , ** kwargs ) : """delete collection of ValidatingWebhookConfiguration This method makes a synchronous HTTP request by default . To make an asynchronous HTTP request , please pass async _ req = True > > > thread = api . delete _ collection _ valida...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'async_req' ) : return self . delete_collection_validating_webhook_configuration_with_http_info ( ** kwargs ) else : ( data ) = self . delete_collection_validating_webhook_configuration_with_http_info ( ** kwargs ) return data
def median ( self ) : """Computes the median of a log - normal distribution built with the stats data ."""
mu = self . mean ( ) ret_val = math . exp ( mu ) if math . isnan ( ret_val ) : ret_val = float ( "inf" ) return ret_val
def is_canonical ( version , loosedev = False ) : # type : ( str , bool ) - > bool """Return whether or not the version string is canonical according to Pep 440"""
if loosedev : return loose440re . match ( version ) is not None return pep440re . match ( version ) is not None
def dict_from_mmcif ( mmcif , path = True ) : """Parse mmcif file into a dictionary . Notes Full list of keys / value types , and further information on them can be viewed here : http : / / mmcif . wwpdb . org / docs / pdb _ to _ pdbx _ correspondences . html All values in the returned dict are str or list ...
if path : with open ( mmcif , 'r' ) as foo : lines = foo . readlines ( ) else : lines = mmcif . splitlines ( ) lines = [ ' ' . join ( x . strip ( ) . split ( ) ) for x in lines ] # Some of the data in a . cif files are stored between ' loop _ ' to initiate a loop , and ' # ' to terminate it . # The vari...
def get_subdomain_ops_at_txid ( self , txid , cur = None ) : """Given a txid , get all subdomain operations at that txid . Include unaccepted operations . Order by zone file index"""
get_cmd = 'SELECT * FROM {} WHERE txid = ? ORDER BY zonefile_offset' . format ( self . subdomain_table ) cursor = None if cur is None : cursor = self . conn . cursor ( ) else : cursor = cur db_query_execute ( cursor , get_cmd , ( txid , ) ) try : return [ x for x in cursor . fetchall ( ) ] except Exception ...
def run ( self , * args ) : """Endit profile information ."""
uuid , kwargs = self . __parse_arguments ( * args ) code = self . edit_profile ( uuid , ** kwargs ) return code
def _render ( tmpl , ctx ) : """: param tmpl : mako . template . Template object : param ctx : A dict or dict - like object to instantiate given"""
is_py3k = anytemplate . compat . IS_PYTHON_3 return tmpl . render_unicode ( ** ctx ) if is_py3k else tmpl . render ( ** ctx )
def tuned ( name , ** kwargs ) : '''Manage options of block device name The name of the block device opts : - read - ahead Read - ahead buffer size - filesystem - read - ahead Filesystem Read - ahead buffer size - read - only Set Read - Only - read - write Set Read - Write'''
ret = { 'changes' : { } , 'comment' : '' , 'name' : name , 'result' : True } kwarg_map = { 'read-ahead' : 'getra' , 'filesystem-read-ahead' : 'getfra' , 'read-only' : 'getro' , 'read-write' : 'getro' } if not __salt__ [ 'file.is_blkdev' ] : ret [ 'comment' ] = ( 'Changes to {0} cannot be applied. ' 'Not a block dev...
def request_url ( req = None ) : """Get full url of a request"""
from uliweb import request r = req or request if request : if r . query_string : return r . path + '?' + r . query_string else : return r . path else : return ''
def borrow ( self , amount , collateral_ratio = None , account = None , target_collateral_ratio = None ) : """Borrow bitassets / smartcoins from the network by putting up collateral in a CFD at a given collateral ratio . : param float amount : Amount to borrow ( denoted in ' asset ' ) : param float collateral...
return self . adjust_debt ( amount , collateral_ratio , account , target_collateral_ratio = target_collateral_ratio , )
def generate_token ( self , user , password ) : """Takes user and password credentials and generates a new token : param user : user : param password : password : return : - dictionary containing token data : raises : - TokenCreateError : If there was an error generating the new token"""
logger . debug ( '(TOKEN_CREATE) :: User: %s' % user ) session = OAuth2Session ( client = LegacyApplicationClient ( client_id = self . client_id ) ) try : return dict ( session . fetch_token ( token_url = self . token_url , username = user , password = password , client_id = self . client_id , client_secret = self ...
def get_all_confirmations ( self , params = None ) : """Get all confirmations This will iterate over all pages until it gets all elements . So if the rate limit exceeded it will throw an Exception and you will get nothing : param params : search params : return : list"""
if not params : params = { } return self . _iterate_through_pages ( self . get_confirmations_per_page , resource = CONFIRMATIONS , ** { 'params' : params } )
def unpause ( self , container ) : """Unpause all processes within a container . Args : container ( str ) : The container to unpause"""
url = self . _url ( '/containers/{0}/unpause' , container ) res = self . _post ( url ) self . _raise_for_status ( res )
def _JsonValueToPythonValue ( json_value ) : """Convert the given JsonValue to a json string ."""
util . Typecheck ( json_value , JsonValue ) _ValidateJsonValue ( json_value ) if json_value . is_null : return None entries = [ ( f , json_value . get_assigned_value ( f . name ) ) for f in json_value . all_fields ( ) ] assigned_entries = [ ( f , value ) for f , value in entries if value is not None ] field , value...
def check_existance ( f ) : """Check if the file supplied as input exists ."""
if not opath . isfile ( f ) : logging . error ( "Nanoget: File provided doesn't exist or the path is incorrect: {}" . format ( f ) ) sys . exit ( "File provided doesn't exist or the path is incorrect: {}" . format ( f ) )
def ObtenerTablaParametros ( self , tipo_recurso , sep = "||" ) : "Devuelve un array de elementos que tienen id y descripción"
if not self . client : self . Conectar ( ) self . response = self . client ( "parametros" , "v1" , tipo_recurso ) result = json . loads ( self . response ) ret = { } if result [ 'success' ] : data = result [ 'data' ] # armo un diccionario con los datos devueltos : key = [ k for k in data [ 0 ] . keys ( ...
def to_file_mode ( self ) : """Write all the messages to files"""
for message_no in range ( len ( self . messages ) ) : self . __to_file ( message_no )
def check_encoding_and_env ( ) : """It brings the environment variables to the screen . The user checks to see if they are using the correct variables ."""
import sys import os if sys . getfilesystemencoding ( ) in [ 'utf-8' , 'UTF-8' ] : print ( __ ( u"{0}File system encoding correct{1}" ) . format ( CheckList . OKGREEN , CheckList . ENDC ) ) else : print ( __ ( u"{0}File system encoding wrong!!{1}" ) . format ( CheckList . FAIL , CheckList . ENDC ) ) check_env_l...
def kde_statsmodels_m ( data , grid , ** kwargs ) : """Multivariate Kernel Density Estimation with Statsmodels Parameters data : numpy . array Data points used to compute a density estimator . It has ` n x p ` dimensions , representing n points and p variables . grid : numpy . array Data points at whi...
kde = KDEMultivariate ( data , ** kwargs ) return kde . pdf ( grid )
def set_flair ( self , * args , ** kwargs ) : """Set flair for this submission . Convenience function that utilizes : meth : ` . ModFlairMixin . set _ flair ` populating both the ` subreddit ` and ` item ` parameters . : returns : The json response from the server ."""
return self . subreddit . set_flair ( self , * args , ** kwargs )
def until ( name , m_args = None , m_kwargs = None , condition = None , period = 0 , timeout = 604800 ) : '''Loop over an execution module until a condition is met . name The name of the execution module m _ args The execution module ' s positional arguments m _ kwargs The execution module ' s keyword a...
ret = { 'name' : name , 'changes' : { } , 'result' : False , 'comment' : '' } if name not in __salt__ : ret [ 'comment' ] = 'Cannot find module {0}' . format ( name ) return ret if condition is None : ret [ 'comment' ] = 'An exit condition must be specified' return ret if not isinstance ( period , int )...
def get_xrefs_list_from_element ( cls , element ) : """Helper for get _ xrefs _ list element is a ClassDefItem or MethodDefItem At the end of the function , we lost if we worked on a class or method but we do not care for now ."""
xref_items = element . XREFfrom . items log . debug ( "%d XREFs found" % len ( xref_items ) ) xrefs = [ ] for xref_item in xref_items : class_ = xref_item [ 0 ] . get_class_name ( ) method_ = xref_item [ 0 ] . get_name ( ) descriptor_ = xref_item [ 0 ] . get_descriptor ( ) xrefs . append ( classmethod2d...
def _generate_message_error ( cls , response_code , messages , response_id ) : """: type response _ code : int : type messages : list [ str ] : type response _ id : str : rtype : str"""
line_response_code = cls . _FORMAT_RESPONSE_CODE_LINE . format ( response_code ) line_response_id = cls . _FORMAT_RESPONSE_ID_LINE . format ( response_id ) line_error_message = cls . _FORMAT_ERROR_MESSAGE_LINE . format ( cls . _GLUE_ERROR_MESSAGE_STRING_EMPTY . join ( messages ) ) return cls . _glue_all_error_message (...
def _get_env_activate ( bin_env ) : '''Return the path to the activate binary'''
if not bin_env : raise CommandNotFoundError ( 'Could not find a `activate` binary' ) if os . path . isdir ( bin_env ) : if salt . utils . platform . is_windows ( ) : activate_bin = os . path . join ( bin_env , 'Scripts' , 'activate.bat' ) else : activate_bin = os . path . join ( bin_env , 'b...
def insert_feasible_configurations ( cur , feasible_configurations , encoded_data = None ) : """Insert a group of feasible configurations into the cache . Args : cur ( : class : ` sqlite3 . Cursor ` ) : An sqlite3 cursor . This function is meant to be run within a : obj : ` with ` statement . feasible _ con...
if encoded_data is None : encoded_data = { } if 'num_variables' not in encoded_data : encoded_data [ 'num_variables' ] = len ( next ( iter ( feasible_configurations ) ) ) if 'num_feasible_configurations' not in encoded_data : encoded_data [ 'num_feasible_configurations' ] = len ( feasible_configurations ) i...
def classes_to_clusters ( self ) : """Return the array ( ordered by cluster number ) of minimum error class to cluster mappings . : return : the mappings : rtype : ndarray"""
array = javabridge . call ( self . jobject , "getClassesToClusters" , "()[I" ) if array is None : return None else : return javabridge . get_env ( ) . get_int_array_elements ( array )
def _container_registration ( self , alias ) : """Check for an available name and return that to the caller ."""
containers = Container . find_by_name ( self . _client_session , alias ) def validate_name ( name ) : valid = True if name in containers : valid = False return valid count = 1 container_name = "{0}-0{1}" . format ( alias , count ) while not validate_name ( container_name ) : count += 1 conta...
def price ( pc , service , attrib , sku ) : """Get a list of a service ' s prices . The list will be in the given region , matching the specific terms and any given attribute filters or a SKU ."""
pc . service = service . lower ( ) pc . sku = sku pc . add_attributes ( attribs = attrib ) click . echo ( "Service Alias: {0}" . format ( pc . service_alias ) ) click . echo ( "URL: {0}" . format ( pc . service_url ) ) click . echo ( "Region: {0}" . format ( pc . region ) ) click . echo ( "Product Terms: {0}" . format ...
async def wait_for_send ( self , event , * , until = None ) : '''Send an event to the main event queue . Can call without delegate . : param until : if the callback returns True , stop sending and return : return : the last True value the callback returns , or None'''
while True : if until : r = until ( ) if r : return r waiter = self . scheduler . send ( event ) if waiter is None : break await waiter
def generate_labels_from_classifications ( classifications , timestamps ) : """This is to generate continuous segments out of classified small windows : param classifications : : param timestamps : : return :"""
window_length = timestamps [ 1 ] - timestamps [ 0 ] combo_list = [ ( classifications [ k ] , timestamps [ k ] ) for k in range ( 0 , len ( classifications ) ) ] labels = [ ] for k , g in itertools . groupby ( combo_list , lambda x : x [ 0 ] ) : items = list ( g ) start_time = items [ 0 ] [ 1 ] end_time = it...
def retrieve ( url ) : """Retrieve and parse PEM - encoded X . 509 certificate chain . See ` validate . request ` for additional info . Args : url : str . SignatureCertChainUrl header value sent by request . Returns : list or bool : If url is valid , returns the certificate chain as a list of cryptograp...
try : pem_data = urlopen ( url ) . read ( ) except ( ValueError , HTTPError ) : warnings . warn ( 'Certificate URL is invalid.' ) return False if sys . version >= '3' : try : pem_data = pem_data . decode ( ) except ( UnicodeDecodeError ) : warnings . warn ( 'Certificate encoding is n...
def checksuper ( sometext , interchange = ALL ) : """Checks that some text is superpalindrome . Checking performs case - insensitive : param str sometext : It is some string that will be checked for superpalindrome as text . What is the text see at help ( palindromus . istext ) The text can be multiline . ...
def text_by_columns ( text , columns ) : column_idx = 0 result_text = "" while column_idx + 1 <= columns : for idx in range ( columns ) : result_text += text [ idx * columns + column_idx ] column_idx += 1 return result_text # check invalid data types OnlyStringsCanBeChecked (...