DATE ADDED TO CATALOG date32 | PUBMEDID int64 | FIRST AUTHOR string | DATE date32 | JOURNAL string | LINK string | STUDY string | DISEASE/TRAIT string | INITIAL SAMPLE SIZE string | REPLICATION SAMPLE SIZE string | REGION string | CHR_ID string | CHR_POS string | REPORTED GENE(S) string | MAPPED_GENE string | UPSTREAM_GENE_ID string | DOWNSTREAM_GENE_ID string | SNP_GENE_IDS string | UPSTREAM_GENE_DISTANCE int64 | DOWNSTREAM_GENE_DISTANCE int64 | STRONGEST SNP-RISK ALLELE string | SNPS string | MERGED int64 | SNP_ID_CURRENT string | CONTEXT string | INTERGENIC int64 | RISK ALLELE FREQUENCY string | P-VALUE float64 | PVALUE_MLOG float64 | P-VALUE (TEXT) string | OR or BETA float64 | 95% CI (TEXT) string | PLATFORM [SNPS PASSING QC] string | CNV string | MAPPED_TRAIT string | MAPPED_TRAIT_URI string | STUDY ACCESSION string | GENOTYPING TECHNOLOGY string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2013-09-25 | 20,064,070 | Herbeck JT | 2010-02-15 | J Infect Dis | www.ncbi.nlm.nih.gov/pubmed/20064070 | Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. | HIV-1 progression | 51 European ancestry rapid progressor male cases, 57 European ancestry moderate progressor male cases, 48 European ancestry long-term progressor male cases | 590 European ancestry seroconverter male cases | 1q32.3 | 1 | 213951784 | PROX1 | PROX1-AS1 | null | null | ENSG00000230461 | null | null | rs17762192-G | rs17762192 | 0 | 17762192 | intron_variant | 0 | 0.59 | 0.000002 | 5.69897 | null | 1.45 | [NR] | Affymetrix [345926] | N | HIV-1 infection | http://www.ebi.ac.uk/efo/EFO_0000180 | GCST000596 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 13q21.32 | 13 | 65637888 | NR | STARP1 - HNRNPA3P5 | ENSG00000214266 | ENSG00000236565 | null | 326,935 | 150,044 | rs11619878-G | rs11619878 | 0 | 11619878 | intergenic_variant | 1 | 0.510985562333036 | 0 | 7 | (IGP15) | 0.1632 | [0.1-0.22] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187008099 | ST6GAL1 | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs11710456-G | rs11710456 | 0 | 11710456 | intron_variant | 0 | 0.699014551202137 | 0 | 44.69897 | (IGP15) | 0.4981 | [0.43-0.57] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 17q25.3 | 17 | 80086944 | NR | CCDC40 | null | null | ENSG00000141519 | null | null | rs1467979-C | rs1467979 | 0 | 1467979 | intron_variant | 0 | 0.82313228539626 | 0.000002 | 5.69897 | (IGP15) | 0.1923 | [0.11-0.27] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187014891 | NR | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs17776120-C | rs17776120 | 0 | 17776120 | intron_variant | 0 | 0.636448318202047 | 0.000002 | 5.69897 | (IGP54) | 0.1654 | [0.097-0.234] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6q23.2 | 6 | 131034724 | NR | EPB41L2 | null | null | ENSG00000079819 | null | null | rs6908917-C | rs6908917 | 0 | 6908917 | intron_variant | 0 | 0.751956642030276 | 0.000002 | 5.69897 | (IGP15) | 0.1674 | [0.098-0.236] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 20q13.12 | 20 | 45145096 | NR | WFDC12 - PI3 | ENSG00000168703 | ENSG00000124102 | null | 20,631 | 29,806 | rs7361168-C | rs7361168 | 0 | 7361168 | intergenic_variant | 1 | 0.758153525448028 | 0.000003 | 5.522879 | (IGP15) | 0.3571 | [0.21-0.51] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187005156 | ST6GAL1 | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs7652995-G | rs7652995 | 0 | 7652995 | intron_variant | 0 | 0.176763000890472 | 0 | 18.30103 | (IGP15) | 0.3911 | [0.31-0.48] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 4q21.23 | 4 | 85208463 | NR | RN7SKP48 - ARHGAP24 | ENSG00000201901 | ENSG00000138639 | null | 107,640 | 266,687 | rs7691216-G | rs7691216 | 0 | 7691216 | intergenic_variant | 1 | 0.155663414959929 | 0.000007 | 5.154902 | (IGP15) | 0.1881 | [0.11-0.27] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 12q24.31 | 12 | 123832329 | NR | DNAH10 | null | null | ENSG00000197653 | null | null | rs7978454-G | rs7978454 | 0 | 7978454 | intron_variant | 0 | 0.409630410507569 | 0.000007 | 5.154902 | (IGP15) | 0.1473 | [0.083-0.212] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q15 | 5 | 95965759 | NR | CAST | null | null | ENSG00000153113 | null | null | rs918629-G | rs918629 | 0 | 918629 | intron_variant | 0 | 0.745524385574354 | 0.000001 | 6 | (IGP15) | 0.1737 | [0.1-0.24] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p21.1 | 9 | 32870070 | NR | Y_RNA - APTX | ENSG00000251986 | ENSG00000137074 | null | 49,720 | 16,531 | rs10971170-G | rs10971170 | 0 | 10971170 | intergenic_variant | 1 | 0.969529949122017 | 0.000009 | 5.045757 | (IGP16) | 0.4143 | [0.23-0.6] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1q43 | 1 | 242368352 | NR | PLD5 | null | null | ENSG00000180287 | null | null | rs1439523-C | rs1439523 | 0 | 1439523 | intron_variant | 0 | 0.983777045475011 | 0.000004 | 5.39794 | (IGP16) | 0.6089 | [0.35-0.87] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6p21.32 | 6 | 32985503 | NR | BRD2 - HLA-DOA | ENSG00000204256 | ENSG00000204252 | null | 3,998 | 18,675 | rs3097645-C | rs3097645 | 0 | 3097645 | intergenic_variant | 1 | 0.873857556055831 | 0.000006 | 5.221849 | (IGP16) | 0.2057 | [0.12-0.29] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8p22 | 8 | 14256307 | NR | SGCZ | null | null | ENSG00000185053 | null | null | rs9886428-G | rs9886428 | 0 | 9886428 | intron_variant | 0 | 0.455051607476636 | 0.000002 | 5.69897 | (IGP55) | 0.1472 | [0.087-0.207] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 2p23.3 | 2 | 27364857 | NR | EIF2B4, GTF3C2-AS2 | null | null | ENSG00000115211, ENSG00000234072 | null | null | rs1058065-G | rs1058065 | 0 | 1058065 | synonymous_variant | 0 | 0.97552739311682 | 0.000004 | 5.39794 | (IGP56) | 0.54 | [0.31-0.77] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1q43 | 1 | 237435116 | NR | RYR2 | null | null | ENSG00000198626 | null | null | rs7529251-C | rs7529251 | 0 | 7529251 | intron_variant | 0 | 0.907539242683476 | 0 | 6.522879 | (IGP16) | 0.2765 | [0.17-0.38] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9q21.32 | 9 | 81907834 | NR | RNA5SP287 - SPATA31D5P | ENSG00000252167 | ENSG00000291172 | null | 22,236 | 5,603 | rs13295552-C | rs13295552 | 0 | 13295552 | intergenic_variant | 1 | 0.029172681294964 | 0.000005 | 5.30103 | (IGP56) | 0.9104 | [0.52-1.3] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187008099 | ST6GAL1 | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs11710456-G | rs11710456 | 0 | 11710456 | intron_variant | 0 | 0.698919993324432 | 0 | 8 | (IGP17) | 0.1999 | [0.13-0.27] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 22q11.21 | 22 | 19577734 | NR | LINC00895 - SEPTIN5 | ENSG00000281548 | ENSG00000184702 | null | 10,895 | 136,733 | rs2106139-G | rs2106139 | 0 | 2106139 | intergenic_variant | 1 | 0.966774019767961 | 0.000006 | 5.221849 | (IGP56) | 0.4353 | [0.25-0.62] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q35 | 7 | 147918548 | NR | CNTNAP2 | null | null | ENSG00000174469 | null | null | rs2538958-C | rs2538958 | 0 | 2538958 | intron_variant | 0 | 0.436017399375279 | 0.000008 | 5.09691 | (IGP56) | 0.1388 | [0.078-0.2] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 17q12 | 17 | 39175092 | NR | CACNB1 | null | null | ENSG00000067191 | null | null | rs523516-T | rs523516 | 0 | 523516 | 3_prime_UTR_variant | 0 | 0.176237627398483 | 0.000004 | 5.39794 | (IGP56) | 0.1916 | [0.11-0.27] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1p22.3 | 1 | 84403278 | NR | DNASE2B | null | null | ENSG00000137976 | null | null | rs604708-C | rs604708 | 0 | 604708 | intron_variant | 0 | 0.970210567603748 | 0.000008 | 5.09691 | (IGP56) | 0.4114 | [0.23-0.59] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p21.1 | 9 | 33153529 | NR | B4GALT1 | null | null | ENSG00000086062 | null | null | rs10813957-G | rs10813957 | 0 | 10813957 | intron_variant | 0 | 0.738414638629283 | 0 | 8.522879 | (IGP57) | 0.2125 | [0.14-0.28] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 12q15 | 12 | 69187442 | NR | CPM - CPSF6 | ENSG00000135678 | ENSG00000111605 | null | 215,872 | 52,101 | rs12367448-C | rs12367448 | 0 | 12367448 | intron_variant | 1 | 0.831671480195817 | 0.000006 | 5.221849 | (IGP57) | 0.2468 | [0.14-0.35] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 2q14.3 | 2 | 124534260 | NR | CNTNAP5 | null | null | ENSG00000155052 | null | null | rs13021885-C | rs13021885 | 0 | 13021885 | intron_variant | 0 | 0.932509117935024 | 0.000008 | 5.09691 | (IGP57) | 0.3904 | [0.22-0.56] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q11.2 | 5 | 56027067 | IL6ST, ANKRD55 | IL6ST-DT - ANKRD55 | ENSG00000227908 | ENSG00000164512 | null | 23,418 | 72,613 | rs17348299-C | rs17348299 | 0 | 17348299 | intron_variant | 1 | 0.836731980863373 | 0 | 10 | (IGP57) | 0.2872 | [0.2-0.37] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1p22.3 | 1 | 86585518 | NR | CLCA4-AS1 | null | null | ENSG00000236915 | null | null | rs1953652-C | rs1953652 | 0 | 1953652 | intron_variant | 0 | 0.653295152202937 | 0.000009 | 5.045757 | (IGP57) | 0.1426 | [0.08-0.206] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q31.1 | 7 | 114101050 | NR | FOXP2 | null | null | ENSG00000128573 | null | null | rs6466479-G | rs6466479 | 0 | 6466479 | intron_variant | 0 | 0.122643248331108 | 0.000002 | 5.69897 | (IGP57) | 0.2271 | [0.13-0.32] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3p14.1 | 3 | 65413223 | NR | MAGI1 | null | null | ENSG00000151276 | null | null | rs7649739-G | rs7649739 | 0 | 7649739 | intron_variant | 0 | 0.358836830440587 | 0.000006 | 5.221849 | (IGP57) | 0.1501 | [0.085-0.215] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8p22 | 8 | 14256307 | NR | SGCZ | null | null | ENSG00000185053 | null | null | rs9886428-G | rs9886428 | 0 | 9886428 | intron_variant | 0 | 0.455051607476636 | 0.000002 | 5.69897 | (IGP57) | 0.1476 | [0.087-0.208] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1q42.12 | 1 | 225405225 | NR | LBR | null | null | ENSG00000143815 | null | null | rs16844846-G | rs16844846 | 0 | 16844846 | intron_variant | 0 | 0.0583315441465594 | 0.000006 | 5.221849 | (IGP58) | 0.311 | [0.18-0.45] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 11q14.1 | 11 | 80600627 | NR | RNU6-544P - ARL6IP1P3 | ENSG00000200146 | ENSG00000255014 | null | 72,561 | 52,802 | rs2140930-G | rs2140930 | 0 | 2140930 | intergenic_variant | 1 | 0.348471261394102 | 0.000005 | 5.30103 | (IGP58) | 0.1678 | [0.095-0.24] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6p21.33 | 6 | 31605179 | NR | NCR3 - UQCRHP1 | ENSG00000204475 | ENSG00000230622 | null | 11,962 | 5,904 | rs2844479-C | rs2844479 | 0 | 2844479 | intergenic_variant | 1 | 0.393054780607685 | 0.000007 | 5.154902 | (IGP58) | 0.1476 | [0.083-0.212] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6p21.32 | 6 | 32985503 | NR | BRD2 - HLA-DOA | ENSG00000204256 | ENSG00000204252 | null | 3,998 | 18,675 | rs3097645-C | rs3097645 | 0 | 3097645 | intergenic_variant | 1 | 0.873514573726542 | 0.000003 | 5.522879 | (IGP58) | 0.2131 | [0.12-0.3] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7p12.2 | 7 | 50310671 | NR | IKZF1 | null | null | ENSG00000185811 | null | null | rs6583437-G | rs6583437 | 0 | 6583437 | intron_variant | 0 | 0.636915159517426 | 0 | 7.522879 | (IGP58) | 0.1772 | [0.11-0.24] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q36.1 | 7 | 151217985 | ABCF2, SMARCD3 | ABCF2-H2BK1, ABCF2 | null | null | ENSG00000285292, ENSG00000033050 | null | null | rs1122979-G | rs1122979 | 0 | 1122979 | intron_variant | 0 | 0.874968858612975 | 0.000007 | 5.154902 | (IGP59) | 0.2213 | [0.12-0.32] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6q24.1 | 6 | 139818678 | NR | FILNC1 | null | null | ENSG00000231426 | null | null | rs12664111-G | rs12664111 | 0 | 12664111 | intron_variant | 0 | 0.0919615409617097 | 0.000006 | 5.221849 | (IGP68) | 0.2425 | [0.14-0.35] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1q31.2 | 1 | 191970658 | NR | LINC02770 | null | null | ENSG00000228215 | null | null | rs17403780-T | rs17403780 | 0 | 17403780 | intron_variant | 0 | 0.910564153517364 | 0.000007 | 5.154902 | (IGP68) | 0.3113 | [0.18-0.45] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 10p13 | 10 | 13319976 | NR | SEPHS1 | null | null | ENSG00000086475 | null | null | rs1747683-G | rs1747683 | 0 | 1747683 | intron_variant | 0 | 0.414510834817453 | 0 | 7 | (IGP68) | 0.1694 | [0.11-0.23] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 4p14 | 4 | 37649533 | NR | RELL1 | null | null | ENSG00000181826 | null | null | rs2292298-G | rs2292298 | 0 | 2292298 | intron_variant | 0 | 0.360936488423865 | 0.000004 | 5.39794 | (IGP68) | 0.1504 | [0.086-0.215] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 20p12.1 | 20 | 17848636 | NR | BANF2 - RNU6-192P | ENSG00000125888 | ENSG00000212555 | null | 112,765 | 55,126 | rs2745851-G | rs2745851 | 0 | 2745851 | regulatory_region_variant | 1 | 0.639234834372217 | 0.000001 | 6.221849 | (IGP68) | 0.1618 | [0.098-0.225] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 4q35.1 | 4 | 182379461 | NR | TENM3 | null | null | ENSG00000218336 | null | null | rs4862046-G | rs4862046 | 0 | 4862046 | intron_variant | 0 | 0.907650657658059 | 0.000009 | 5.045757 | (IGP68) | 0.2467 | [0.14-0.36] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1p36.11 | 1 | 24970252 | NR | RUNX3 - MIR4425 | ENSG00000020633 | ENSG00000264371 | null | 5,131 | 53,251 | rs10751776-C | rs10751776 | 0 | 10751776 | intron_variant | 1 | 0.54112898484173 | 0.000007 | 5.154902 | (IGP69) | 0.1484 | [0.084-0.213] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p21.1 | 9 | 33128023 | NR | B4GALT1 | null | null | ENSG00000086062 | null | null | rs10813951-G | rs10813951 | 0 | 10813951 | intron_variant | 0 | 0.262989649130629 | 0 | 7.154902 | (IGP69) | 0.1926 | [0.12-0.26] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9q32 | 9 | 112925455 | NR | SLC46A2 - MUPP | ENSG00000119457 | ENSG00000237906 | null | 34,579 | 33,679 | rs10817408-C | rs10817408 | 0 | 10817408 | regulatory_region_variant | 1 | 0.149316170753455 | 0.000006 | 5.221849 | (IGP69) | 0.2277 | [0.13-0.33] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8p21.1 | 8 | 28324238 | NR | PNOC | null | null | ENSG00000168081 | null | null | rs11779594-C | rs11779594 | 0 | 11779594 | intron_variant | 0 | 0.930937853767276 | 0.000009 | 5.045757 | (IGP69) | 0.2652 | [0.15-0.38] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q31.1 | 7 | 107951753 | LAMB1 | LAMB1 | null | null | ENSG00000091136 | null | null | rs2072209-G | rs2072209 | 0 | 2072209 | intron_variant | 0 | 0.0582759206419973 | 0 | 8 | (IGP69) | 0.3742 | [0.25-0.5] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 22q11.23 | 22 | 23828809 | SMARCB1, DERL3 | SMARCB1 | null | null | ENSG00000099956 | null | null | rs2186369-G | rs2186369 | 0 | 2186369 | intron_variant | 0 | 0.189823636647347 | 0 | 7.69897 | (IGP69) | 0.2336 | [0.15-0.32] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q21.3 | 3 | 128939649 | NR | CFAP92 | null | null | ENSG00000114656 | null | null | rs2933343-G | rs2933343 | 0 | 2933343 | intron_variant | 0 | 0.759492835488185 | 0.000008 | 5.09691 | (IGP69) | 0.1615 | [0.091-0.232] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 22q13.1 | 22 | 39463164 | MGAT3, TAB1, CACNA1I, SYNGR1 | MGAT3 | null | null | ENSG00000128268 | null | null | rs909674-C | rs909674 | 0 | 909674 | intron_variant | 0 | 0.299323467231387 | 0.000009 | 5.045757 | (IGP69) | 0.151 | [0.084-0.218] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6p21.33 | 6 | 30698892 | NR | RPL7P4 - MDC1 | ENSG00000230449 | ENSG00000137337 | null | 1,357 | 915 | rs9468811-C | rs9468811 | 0 | 9468811 | intergenic_variant | 1 | 0.937418950958538 | 0.000003 | 5.522879 | (IGP69) | 0.3228 | [0.19-0.46] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9q33.1 | 9 | 117796733 | NR | TLR4 - TPT1P9 | ENSG00000136869 | ENSG00000234782 | null | 71,998 | 286,136 | rs10115586-C | rs10115586 | 0 | 10115586 | intron_variant | 1 | 0.70273622340899 | 0.000001 | 6.30103 | (IGP7) | 0.1676 | [0.1-0.23] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1p36.33 | 1 | 1143818 | NR | LINC01342 | null | null | ENSG00000223823 | null | null | rs11260603-C | rs11260603 | 0 | 11260603 | non_coding_transcript_exon_variant | 0 | 0.217058243435692 | 0 | 6.39794 | (IGP7) | 0.2608 | [0.16-0.36] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8q13.3 | 8 | 70632513 | NR | LACTB2-AS1, LACTB2 | null | null | ENSG00000246366, ENSG00000147592 | null | null | rs13272623-G | rs13272623 | 0 | 13272623 | intron_variant | 0 | 0.154915348909657 | 0.000002 | 5.69897 | (IGP7) | 0.2155 | [0.13-0.3] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6q15 | 6 | 89948064 | BACH2 | BACH2 | null | null | ENSG00000112182 | null | null | rs404256-C | rs404256 | 0 | 404256 | intron_variant | 0 | 0.559129675122385 | 0 | 8.154902 | (IGP7) | 0.2094 | [0.14-0.28] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 20q12 | 20 | 42365454 | NR | PTPRT | null | null | ENSG00000196090 | null | null | rs6030171-C | rs6030171 | 0 | 6030171 | intron_variant | 0 | 0.359936573653761 | 0.000003 | 5.522879 | (IGP7) | 0.148 | [0.086-0.21] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 16q12.2 | 16 | 53039876 | NR | CHD9NB | null | null | ENSG00000277639 | null | null | rs10852453-T | rs10852453 | 0 | 10852453 | intergenic_variant | 0 | 0.502934347747748 | 0.000001 | 6 | (IGP20) | 0.1462 | [0.088-0.205] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8q24.13 | 8 | 124709125 | NR | MTSS1 | null | null | ENSG00000170873 | null | null | rs11781525-G | rs11781525 | 0 | 11781525 | intron_variant | 0 | 0.97440182935123 | 0.000006 | 5.221849 | (IGP59) | 0.6033 | [0.34-0.87] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q15 | 5 | 95937706 | NR | ELL2 | null | null | ENSG00000118985 | null | null | rs7700895-T | rs7700895 | 0 | 7700895 | intron_variant | 0 | 0.783746748105216 | 0.000001 | 6 | (IGP35) | 0.1776 | [0.11-0.25] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 17p12 | 17 | 13805544 | NR | COX10-DT | null | null | ENSG00000236088 | null | null | rs7215286-C | rs7215286 | 0 | 7215286 | intron_variant | 0 | 0.961960845948353 | 0.000003 | 5.522879 | (IGP65) | 0.4016 | [0.23-0.57] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 20p12.1 | 20 | 17848636 | NR | BANF2 - RNU6-192P | ENSG00000125888 | ENSG00000212555 | null | 112,765 | 55,126 | rs2745851-G | rs2745851 | 0 | 2745851 | regulatory_region_variant | 1 | 0.639172889630619 | 0.000002 | 5.69897 | (IGP66) | 0.1529 | [0.089-0.216] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187008099 | ST6GAL1 | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs11710456-G | rs11710456 | 0 | 11710456 | intron_variant | 0 | 0.698889241071429 | 0.000002 | 5.69897 | (IGP36) | 0.1678 | [0.099-0.237] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 10p12.1 | 10 | 25591530 | NR | GPR158 | null | null | ENSG00000151025 | null | null | rs17558301-C | rs17558301 | 0 | 17558301 | intron_variant | 0 | 0.961067 | 0.000007 | 5.154902 | (IGP36) | 1.5855 | [0.9-2.28] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3p14.2 | 3 | 62796793 | NR | CADPS | null | null | ENSG00000163618 | null | null | rs304172-G | rs304172 | 0 | 304172 | intron_variant | 0 | 0.956126387053571 | 0.000008 | 5.09691 | (IGP36) | 0.3337 | [0.19-0.48] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 11p15.1 | 11 | 19030325 | NR | MRGPRX9P | null | null | ENSG00000255424 | null | null | rs7111562-C | rs7111562 | 0 | 7111562 | non_coding_transcript_exon_variant | 0 | 0.139875874553571 | 0.000002 | 5.69897 | (IGP36) | 0.2255 | [0.13-0.32] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6q16.3 | 6 | 104215903 | NR | NPM1P10 - HACE1 | ENSG00000214428 | ENSG00000085382 | null | 189,140 | 512,191 | rs2744203-C | rs2744203 | 0 | 2744203 | intergenic_variant | 1 | 0.0959963838018742 | 0.000007 | 5.154902 | (IGP39) | 0.2327 | [0.13-0.33] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 6q22.1 | 6 | 114748553 | NR | LNCPOIR - RNU6-475P | ENSG00000232395 | ENSG00000251882 | null | 167,548 | 118,320 | rs6928844-C | rs6928844 | 0 | 6928844 | intergenic_variant | 1 | 0.828187721552878 | 0.000004 | 5.39794 | (IGP39) | 0.285 | [0.16-0.41] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 11p15.4 | 11 | 7443141 | NR | SYT9-AS1, SYT9 | null | null | ENSG00000251364, ENSG00000170743 | null | null | rs4076555-C | rs4076555 | 0 | 4076555 | intron_variant | 0 | 0.336591107706174 | 0.000007 | 5.154902 | (IGP4) | 0.1591 | [0.09-0.229] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q11.2 | 5 | 56027067 | IL6ST, ANKRD55 | IL6ST-DT - ANKRD55 | ENSG00000227908 | ENSG00000164512 | null | 23,418 | 72,613 | rs17348299-C | rs17348299 | 0 | 17348299 | intron_variant | 1 | 0.836659126892253 | 0 | 8.69897 | (IGP3) | 0.2658 | [0.18-0.35] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q31.1 | 7 | 114101050 | NR | FOXP2 | null | null | ENSG00000128573 | null | null | rs6466479-G | rs6466479 | 0 | 6466479 | intron_variant | 0 | 0.122476576224399 | 0.000003 | 5.522879 | (IGP3) | 0.2229 | [0.13-0.32] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8p22 | 8 | 14256307 | NR | SGCZ | null | null | ENSG00000185053 | null | null | rs9886428-G | rs9886428 | 0 | 9886428 | intron_variant | 0 | 0.455031556990205 | 0.000003 | 5.522879 | (IGP3) | 0.1428 | [0.083-0.203] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 10q21.3 | 10 | 63112651 | NR | RNU6-543P - NRBF2 | ENSG00000199446 | ENSG00000148572 | null | 2,405 | 20,596 | rs10822136-C | rs10822136 | 0 | 10822136 | intergenic_variant | 1 | 0.805344702630406 | 0.000001 | 6.30103 | (IGP30) | 0.2106 | [0.13-0.29] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3q27.3 | 3 | 187008099 | ST6GAL1 | ST6GAL1 | null | null | ENSG00000073849 | null | null | rs11710456-G | rs11710456 | 0 | 11710456 | intron_variant | 0 | 0.698844000445832 | 0.000003 | 5.522879 | (IGP30) | 0.164 | [0.095-0.233] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 11p15.4 | 11 | 5666794 | NR | TRIM5 | null | null | ENSG00000132256 | null | null | rs11820502-C | rs11820502 | 0 | 11820502 | intron_variant | 0 | 0.287788676326349 | 0.000002 | 5.69897 | (IGP30) | 0.1821 | [0.11-0.26] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p21.1 | 9 | 28181087 | NR | LINGO2 | null | null | ENSG00000174482 | null | null | rs1319535-C | rs1319535 | 0 | 1319535 | intron_variant | 0 | 0.34574886090058 | 0.000004 | 5.39794 | (IGP30) | 0.1509 | [0.087-0.215] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3p22.1 | 3 | 39433851 | NR | RPSA - MOBP | ENSG00000168028 | ENSG00000168314 | null | 7,596 | 33,321 | rs17038828-C | rs17038828 | 0 | 17038828 | intron_variant | 1 | 0.979741981275078 | 0.000008 | 5.09691 | (IGP30) | 0.56 | [0.31-0.81] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p13.3 | 9 | 36099402 | RECK | RECK | null | null | ENSG00000122707 | null | null | rs4878639-C | rs4878639 | 0 | 4878639 | intron_variant | 0 | 0.263725273253227 | 0 | 7.39794 | (IGP17) | 0.1959 | [0.13-0.27] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 15q23 | 15 | 68426648 | NR | ITGA11 | null | null | ENSG00000137809 | null | null | rs16952065-C | rs16952065 | 0 | 16952065 | intron_variant | 0 | 0.93746857524488 | 0.000006 | 5.221849 | (IGP15) | 0.4117 | [0.23-0.59] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q22.3 | 5 | 115803051 | NR | RNU2-49P - CDO1 | ENSG00000222598 | ENSG00000129596 | null | 28,549 | 1,682 | rs13174348-G | rs13174348 | 0 | 13174348 | intergenic_variant | 1 | 0.784686077436582 | 0.000003 | 5.522879 | (IGP54) | 0.1823 | [0.11-0.26] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 2q11.2 | 2 | 99259781 | NR | LYG2 - LYG1 | ENSG00000185674 | ENSG00000144214 | null | 4,115 | 24,457 | rs2200578-C | rs2200578 | 0 | 2200578 | intron_variant | 1 | 0.788386317008014 | 0 | 6.39794 | (IGP15) | 0.1902 | [0.12-0.26] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9q34.3 | 9 | 134924613 | NR | FCN1 - OLFM1 | ENSG00000085265 | ENSG00000130558 | null | 6,659 | 150,809 | rs2094962-C | rs2094962 | 0 | 2094962 | intergenic_variant | 1 | 0.901323053404539 | 0.000005 | 5.30103 | (IGP54) | 0.2366 | [0.14-0.34] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 22q11.23 | 22 | 23828809 | SMARCB1, DERL3 | SMARCB1 | null | null | ENSG00000099956 | null | null | rs2186369-G | rs2186369 | 0 | 2186369 | intron_variant | 0 | 0.189496820649755 | 0 | 6.69897 | (IGP54) | 0.2177 | [0.14-0.3] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8q22.1 | 8 | 93210716 | NR | LINC02906 - CIBAR1-DT | ENSG00000279847 | ENSG00000246662 | null | 43,866 | 2,172 | rs278541-C | rs278541 | 0 | 278541 | intergenic_variant | 1 | 0.97906300623053 | 0 | 7.39794 | (IGP54) | 0.8053 | [0.52-1.09] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7q31.1 | 7 | 114101050 | NR | FOXP2 | null | null | ENSG00000128573 | null | null | rs6466479-G | rs6466479 | 0 | 6466479 | intron_variant | 0 | 0.122643248331108 | 0.000007 | 5.154902 | (IGP54) | 0.2166 | [0.12-0.31] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 18q21.1 | 18 | 48701073 | NR | CTIF | null | null | ENSG00000134030 | null | null | rs16949825-C | rs16949825 | 0 | 16949825 | intron_variant | 0 | 0.902274750778816 | 0.000007 | 5.154902 | (IGP55) | 0.2457 | [0.14-0.35] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q11.2 | 5 | 56027067 | IL6ST, ANKRD55 | IL6ST-DT - ANKRD55 | ENSG00000227908 | ENSG00000164512 | null | 23,418 | 72,613 | rs17348299-C | rs17348299 | 0 | 17348299 | intron_variant | 1 | 0.836731980863373 | 0 | 10 | (IGP55) | 0.2864 | [0.2-0.37] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 17q12 | 17 | 39176710 | NR | CACNB1 | null | null | ENSG00000067191 | null | null | rs626657-C | rs626657 | 0 | 626657 | intron_variant | 0 | 0.861032878949711 | 0.000002 | 5.69897 | (IGP55) | 0.2321 | [0.14-0.33] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 3p22.3 | 3 | 32223499 | NR | RPSAP11 - CMTM8 | ENSG00000237433 | ENSG00000170293 | null | 31,872 | 13,708 | rs4376071-C | rs4376071 | 0 | 4376071 | intron_variant | 1 | 0.313983692931112 | 0.000008 | 5.09691 | (IGP16) | 0.1605 | [0.09-0.231] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 1p36.33 | 1 | 2274142 | NR | SKI | null | null | ENSG00000157933 | null | null | rs12045693-C | rs12045693 | 0 | 12045693 | intron_variant | 0 | 0.573032700580098 | 0.000003 | 5.522879 | (IGP56) | 0.1539 | [0.089-0.219] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 8q13.3 | 8 | 70632513 | NR | LACTB2-AS1, LACTB2 | null | null | ENSG00000246366, ENSG00000147592 | null | null | rs13272623-G | rs13272623 | 0 | 13272623 | intron_variant | 0 | 0.155110978134761 | 0.000004 | 5.39794 | (IGP56) | 0.2093 | [0.12-0.3] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 11q22.3 | 11 | 107476551 | NR | CWF19L2 - ALKBH8 | ENSG00000152404 | ENSG00000137760 | null | 18,709 | 26,176 | rs11212260-C | rs11212260 | 0 | 11212260 | intergenic_variant | 1 | 0.0281428517133956 | 0.000005 | 5.30103 | (IGP17) | 0.455 | [0.26-0.65] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q11.2 | 5 | 56027067 | IL6ST, ANKRD55 | IL6ST-DT - ANKRD55 | ENSG00000227908 | ENSG00000164512 | null | 23,418 | 72,613 | rs17348299-C | rs17348299 | 0 | 17348299 | intron_variant | 1 | 0.836660240071397 | 0.000008 | 5.09691 | (IGP56) | 0.2001 | [0.11-0.29] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 10q25.1 | 10 | 109211677 | NR | RNU5B-6P - RNU6-839P | ENSG00000252574 | ENSG00000200217 | null | 26,676 | 27,962 | rs17783561-T | rs17783561 | 0 | 17783561 | intergenic_variant | 1 | 0.135585937974119 | 0.000006 | 5.221849 | (IGP56) | 0.2748 | [0.16-0.39] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p21.1 | 9 | 33124874 | B4GALT1 | B4GALT1 | null | null | ENSG00000086062 | null | null | rs12342831-C | rs12342831 | 0 | 12342831 | intron_variant | 0 | 0.262623398308856 | 0 | 10.522879 | (IGP17) | 0.2366 | [0.17-0.31] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 2q32.1 | 2 | 185319303 | NR | ZNF804A - ELF2P4 | ENSG00000170396 | ENSG00000225406 | null | 379,811 | 227,832 | rs1364477-G | rs1364477 | 0 | 1364477 | intergenic_variant | 1 | 0.178595763239875 | 0.000006 | 5.221849 | (IGP17) | 0.1816 | [0.1-0.26] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 5q21.1 | 5 | 100966102 | NR | ST8SIA4 - RN7SL802P | ENSG00000113532 | ENSG00000277506 | null | 62,817 | 615,728 | rs17161553-C | rs17161553 | 0 | 17161553 | intergenic_variant | 1 | 0.00759162019720625 | 0.000006 | 5.221849 | (IGP17) | 1.5958 | [0.9-2.29] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 12q24.21 | 12 | 115774058 | NR | RN7SL865P - LINC02463 | ENSG00000240205 | ENSG00000257683 | null | 56,045 | 36,301 | rs17719439-G | rs17719439 | 0 | 17719439 | intron_variant | 1 | 0.96234668518024 | 0.000001 | 6 | (IGP17) | 0.4037 | [0.24-0.57] unit decrease | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 9p24.1 | 9 | 7518656 | NR | RPL4P5 - PPIAP33 | ENSG00000230207 | ENSG00000178654 | null | 40,336 | 79,167 | rs2381628-C | rs2381628 | 0 | 2381628 | intergenic_variant | 1 | 0.816537394303516 | 0.000006 | 5.221849 | (IGP17) | 0.1783 | [0.1-0.26] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
2013-06-14 | 23,382,691 | Lauc G | 2013-01-31 | PLoS Genet | www.ncbi.nlm.nih.gov/pubmed/23382691 | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. | IgG glycosylation | 2,247 European ancestry individuals | NA | 7p14.3 | 7 | 34657448 | NR | NPSR1-AS1 | null | null | ENSG00000197085 | null | null | rs2530544-G | rs2530544 | 0 | 2530544 | intron_variant | 0 | 0.768357767245216 | 0.000001 | 6.09691 | (IGP17) | 0.1982 | [0.12-0.28] unit increase | Illumina [~ 2500000] (imputed) | N | serum IgG glycosylation measurement | http://www.ebi.ac.uk/efo/EFO_0005193 | GCST001848 | Genome-wide genotyping array |
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