rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/Colon3Node.java/buggy/src/org/jruby/ast/Colon3Node.java |
public RubyArray(Ruby ruby) { this(ruby, new ArrayList()); | public RubyArray(final Ruby ruby, final ArrayList list) { super(ruby, ruby.getClasses().getArrayClass()); this.list = list; | public RubyArray(Ruby ruby) { this(ruby, new ArrayList()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
public static RubyArray create(Ruby ruby, RubyObject recv, RubyObject[] args) { RubyArray array = newArray(ruby, Arrays.asList(args)); | public final static RubyArray create(final Ruby ruby, final RubyObject recv, final RubyObject[] args) { final RubyArray array = newArray(ruby, args); | public static RubyArray create(Ruby ruby, RubyObject recv, RubyObject[] args) { RubyArray array = newArray(ruby, Arrays.asList(args)); array.setRubyClass((RubyClass) recv); return array; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
public static RubyArray newArray(Ruby ruby, long len) { | public final static RubyArray newArray(final Ruby ruby, final long len) { | public static RubyArray newArray(Ruby ruby, long len) { return new RubyArray(ruby, new ArrayList((int) len)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
return new RubyArray(ruby) { | return new RubyArray(ruby, null) { | public static RubyArray nilArray(Ruby ruby) { return new RubyArray(ruby) { public boolean isNil() { return true; } }; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
public RubyObject subseq(long beg, long len) { int length = getLength(); | public final RubyObject subseq(final long beg, long len) { final int length = getLength(); | public RubyObject subseq(long beg, long len) { int length = getLength(); if (beg > length) { return getRuby().getNil(); } if (beg < 0 || len < 0) { return getRuby().getNil(); } if (beg + len > length) { len = length - beg; } if (len < 0) { len = 0; } if (len == 0) { return newArray(getRuby(), 0); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
if (beg > length) { return getRuby().getNil(); } if (beg < 0 || len < 0) { | if (beg > length || beg < 0 || len < 0) { | public RubyObject subseq(long beg, long len) { int length = getLength(); if (beg > length) { return getRuby().getNil(); } if (beg < 0 || len < 0) { return getRuby().getNil(); } if (beg + len > length) { len = length - beg; } if (len < 0) { len = 0; } if (len == 0) { return newArray(getRuby(), 0); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
if (len < 0) { len = 0; } if (len == 0) { | if (len <= 0) { | public RubyObject subseq(long beg, long len) { int length = getLength(); if (beg > length) { return getRuby().getNil(); } if (beg < 0 || len < 0) { return getRuby().getNil(); } if (beg + len > length) { len = length - beg; } if (len < 0) { len = 0; } if (len == 0) { return newArray(getRuby(), 0); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
RubyArray ary2 = newArray(getRuby(), list.subList((int) beg, (int) (len + beg))); | RubyArray ary2 = newArray(getRuby(), new ArrayList(list.subList((int) beg, (int) (len + beg)))); | public RubyObject subseq(long beg, long len) { int length = getLength(); if (beg > length) { return getRuby().getNil(); } if (beg < 0 || len < 0) { return getRuby().getNil(); } if (beg + len > length) { len = length - beg; } if (len < 0) { len = 0; } if (len == 0) { return newArray(getRuby(), 0); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyArray.java/buggy/org/jruby/RubyArray.java |
localQuery = (LocalQuery) applicationContext.getBean(IQuery.class.getName()); localUpdate = (LocalUpdate) applicationContext.getBean(IUpdate.class.getName()); | public void create() { applicationContext = OmeroContext.getManagedServerContext(); serviceFactory = new ServiceFactory( applicationContext ); eventContext = (EventContext) applicationContext.getBean("eventContext"); log.debug("Created:\n"+getLogString()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bfcb48d728436e30c2268bb790693dc55abf5340/AbstractBean.java/buggy/components/ejb/src/ome/ro/ejb/AbstractBean.java | |
int status = 0; | private static int runInterpreter(Reader reader, String filename) { Ruby runtime = Ruby.getDefaultInstance(); int status = 0; try { initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b23daaf392467ac2ccb6e6201c1cff058e788c40/Main.java/clean/src/org/jruby/Main.java | |
initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); | runInterpreter(runtime, reader, filename); return 0; } catch (SystemExit e) { RubyFixnum status = (RubyFixnum)e.getException().getInstanceVariable("status"); return RubyNumeric.fix2int(status); | private static int runInterpreter(Reader reader, String filename) { Ruby runtime = Ruby.getDefaultInstance(); int status = 0; try { initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b23daaf392467ac2ccb6e6201c1cff058e788c40/Main.java/clean/src/org/jruby/Main.java |
status = 1; | return 1; | private static int runInterpreter(Reader reader, String filename) { Ruby runtime = Ruby.getDefaultInstance(); int status = 0; try { initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b23daaf392467ac2ccb6e6201c1cff058e788c40/Main.java/clean/src/org/jruby/Main.java |
status = 1; | return 1; | private static int runInterpreter(Reader reader, String filename) { Ruby runtime = Ruby.getDefaultInstance(); int status = 0; try { initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b23daaf392467ac2ccb6e6201c1cff058e788c40/Main.java/clean/src/org/jruby/Main.java |
runtime.tearDown(); return status; | private static int runInterpreter(Reader reader, String filename) { Ruby runtime = Ruby.getDefaultInstance(); int status = 0; try { initializeRuntime(runtime, filename); Node parsedScript = getParsedScript(runtime, reader, filename); runtime.eval(parsedScript); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b23daaf392467ac2ccb6e6201c1cff058e788c40/Main.java/clean/src/org/jruby/Main.java | |
dirClass.defineSingletonMethod("open", CallbackFactory.getOptSingletonMethod(RubyDir.class, "open", RubyString.class)); | dirClass.defineSingletonMethod("open", CallbackFactory.getSingletonMethod(RubyDir.class, "open", RubyString.class)); | public static RubyClass createDirClass(Ruby ruby) { RubyClass dirClass = ruby.defineClass("Dir", ruby.getClasses().getObjectClass()); dirClass.includeModule(ruby.getRubyModule("Enumerable")); dirClass.defineSingletonMethod("new", CallbackFactory.getOptSingletonMethod(RubyDir.class, "newInstance")); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java |
dirClass.defineMethod("seek", CallbackFactory.getMethod(RubyDir.class, "seek", RubyInteger.class)); | dirClass.defineMethod("seek", CallbackFactory.getMethod(RubyDir.class, "seek", RubyFixnum.class)); | public static RubyClass createDirClass(Ruby ruby) { RubyClass dirClass = ruby.defineClass("Dir", ruby.getClasses().getObjectClass()); dirClass.includeModule(ruby.getRubyModule("Enumerable")); dirClass.defineSingletonMethod("new", CallbackFactory.getOptSingletonMethod(RubyDir.class, "newInstance")); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java |
public static RubyArray glob(IRubyObject recv, RubyString pat) { // FIXME this is only a small subset of the functionallity of this function String pattern = pat.toString(); /*if (pattern.indexOf("**") != -1 || pattern.indexOf("?") != -1) { throw new NotImplementedErr... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java | ||
/*if (pattern.indexOf("**") != -1 || pattern.indexOf("?") != -1) { throw new NotImplementedError(); }*/ | public static RubyArray glob(IRubyObject recv, RubyString pat) { // FIXME this is only a small subset of the functionallity of this function String pattern = pat.toString(); /*if (pattern.indexOf("**") != -1 || pattern.indexOf("?") != -1) { throw new NotImplementedErr... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java | |
public static RubyArray glob(IRubyObject recv, RubyString pat) { // FIXME this is only a small subset of the functionallity of this function String pattern = pat.toString(); /*if (pattern.indexOf("**") != -1 || pattern.indexOf("?") != -1) { throw new NotImplementedErr... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java | ||
return new RubyString(getRuntime(), snapshot[pos++]); | pos++; if (pos >= snapshot.length) { return RubyString.nilString(runtime); } return new RubyString(getRuntime(), snapshot[pos]); | public RubyString read() { return new RubyString(getRuntime(), snapshot[pos++]); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8c092e5bd528424763aecdc0db8bb50133807907/RubyDir.java/clean/org/jruby/RubyDir.java |
getBlock().push(null, new IterateMethod(blockMethod, data2), getRubyTopSelf()); | getBlockStack().push(null, new IterateMethod(blockMethod, data2), getRubyTopSelf()); | public RubyObject iterate(Callback iterateMethod, RubyObject data1, Callback blockMethod, RubyObject data2) { // VALUE self = ruby_top_self; getIterStack().push(Iter.ITER_PRE); getBlock().push(null, new IterateMethod(blockMethod, data2), getRubyTopSelf()); try { while (true) {... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8db42974495981011f558bcce15e2dfc28681a76/Ruby.java/clean/org/jruby/Ruby.java |
getBlock().pop(); | getBlockStack().pop(); | public RubyObject iterate(Callback iterateMethod, RubyObject data1, Callback blockMethod, RubyObject data2) { // VALUE self = ruby_top_self; getIterStack().push(Iter.ITER_PRE); getBlock().push(null, new IterateMethod(blockMethod, data2), getRubyTopSelf()); try { while (true) {... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8db42974495981011f558bcce15e2dfc28681a76/Ruby.java/clean/org/jruby/Ruby.java |
AndFilter presenceFilter = new AndFilter(new PacketTypeFilter(Presence.class), new FromContainsFilter(this.participantJID)); | AndFilter presenceFilter = new AndFilter(new PacketTypeFilter(Presence.class), new BareAddressFilter(participantJID)); | public ChatRoomImpl(final String participantJID, String participantNickname, String title) { this.participantJID = participantJID; this.participantNickname = participantNickname; AndFilter presenceFilter = new AndFilter(new PacketTypeFilter(Presence.class), new FromContainsFilter(this.participa... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/51b0677cc8acdda79d63621852ba4cf2b2ae690b/ChatRoomImpl.java/clean/src/java/org/jivesoftware/spark/ui/rooms/ChatRoomImpl.java |
AndFilter messageFilter = new AndFilter(new PacketTypeFilter(Message.class), new FromContainsFilter(participantJID)); | AndFilter messageFilter = new AndFilter(new PacketTypeFilter(Message.class), new BareAddressFilter(participantJID)); | public ChatRoomImpl(final String participantJID, String participantNickname, String title) { this.participantJID = participantJID; this.participantNickname = participantNickname; AndFilter presenceFilter = new AndFilter(new PacketTypeFilter(Presence.class), new FromContainsFilter(this.participa... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/51b0677cc8acdda79d63621852ba4cf2b2ae690b/ChatRoomImpl.java/clean/src/java/org/jivesoftware/spark/ui/rooms/ChatRoomImpl.java |
ruby = Ruby.getDefaultInstance(null); | if (ruby == null) { ruby = Ruby.getDefaultInstance(null); } | public void setUp() { ruby = Ruby.getDefaultInstance(null); rubyTime = ruby.getClasses().getTimeClass(); RubyObject[] args = new RubyObject[1]; args[0] = RubyFixnum.newFixnum(ruby, 18000000); nineTeenSeventy = RubyTime.s_at(ruby, rubyTime, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/68ea79c613972391a1d5009c8c9590b9b87d509a/TestRubyTime.java/buggy/org/jruby/test/TestRubyTime.java |
Thread.sleep(1000); | Thread.sleep(100); | public void testTimeNow() { RubyTime myTime = RubyTime.s_new(ruby, rubyTime); try { Thread.sleep(1000); } catch (InterruptedException e) { fail("Unexpected InterruptedException"); } Date now = new Date(); assertTrue(now.after(myTime.getJavaDate())); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/68ea79c613972391a1d5009c8c9590b9b87d509a/TestRubyTime.java/buggy/org/jruby/test/TestRubyTime.java |
createWindowsMenu(); | ImViewerUI(String title) { super(title); loadingWindow = new LoadingWindow(this); createWindowsMenu(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8b5ed57b1a06841fc56344f3b4489a5dc633e6c0/ImViewerUI.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/view/ImViewerUI.java | |
TaskBar tb = ImViewerAgent.getRegistry().getTaskBar(); tb.addToMenu(TaskBar.WINDOW_MENU, windowsMenu); | private JMenuBar createMenuBar() { JMenuBar menuBar = new JMenuBar(); menuBar.add(createControlsMenu()); menuBar.add(createZoomMenu()); menuBar.add(createRatingMenu()); //menuBar.add(windowsMenu); //Adds windows menu to the task bar menu. TaskBar tb = ImViewerAge... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8b5ed57b1a06841fc56344f3b4489a5dc633e6c0/ImViewerUI.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/view/ImViewerUI.java | |
public String onPrepareStatement(String sql) { // start StringBuilder sb = new StringBuilder(); String[] first = sql.split("\\sfrom\\s"); sb.append(first[0]); if (first.length == 1) { return sb.toString(); } else if (first.length == 2) { // from sb.append("\n from "); String[] second = first[1]... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/eb1076fdd0ffc70d64cfdf60fab495fd57a62014/OmeroInterceptor.java/clean/components/server/src/ome/tools/hibernate/OmeroInterceptor.java | ||
if (first.length == 1) { return sb.toString(); } else if (first.length == 2) { | for (int i = 1; i < first.length; i++) { | public String onPrepareStatement(String sql) { // start StringBuilder sb = new StringBuilder(); String[] first = sql.split("\\sfrom\\s"); sb.append(first[0]); if (first.length == 1) { return sb.toString(); } else if (first.length == 2) { // from sb.append("\n from "); String[] second = first[1]... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/eb1076fdd0ffc70d64cfdf60fab495fd57a62014/OmeroInterceptor.java/clean/components/server/src/ome/tools/hibernate/OmeroInterceptor.java |
String[] second = first[1].split("\\swhere\\s"); sb.append(second[0]); if (second.length == 1) { return sb.toString(); } else if (second.length == 2) { sb.append("\n where "); sb.append(second[1]); return sb.toString(); } | sb.append(first[i]); | public String onPrepareStatement(String sql) { // start StringBuilder sb = new StringBuilder(); String[] first = sql.split("\\sfrom\\s"); sb.append(first[0]); if (first.length == 1) { return sb.toString(); } else if (first.length == 2) { // from sb.append("\n from "); String[] second = first[1]... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/eb1076fdd0ffc70d64cfdf60fab495fd57a62014/OmeroInterceptor.java/clean/components/server/src/ome/tools/hibernate/OmeroInterceptor.java |
throw new InternalException("Assumptions about the number of " + "\"froms\" and \"wheres\" in sql query failed. "); | String[] second = sb.toString().split("\\swhere\\s"); sb = new StringBuilder(); sb.append(second[0]); for (int j = 1; j < second.length; j++) { sb.append("\n where "); sb.append(second[j]); } return sb.toString(); | public String onPrepareStatement(String sql) { // start StringBuilder sb = new StringBuilder(); String[] first = sql.split("\\sfrom\\s"); sb.append(first[0]); if (first.length == 1) { return sb.toString(); } else if (first.length == 2) { // from sb.append("\n from "); String[] second = first[1]... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/eb1076fdd0ffc70d64cfdf60fab495fd57a62014/OmeroInterceptor.java/clean/components/server/src/ome/tools/hibernate/OmeroInterceptor.java |
wData = Helper.createPlane(planeDef, i, metadata, pixels); | wData = PlaneFactory.createPlane(planeDef, i, metadata, pixels); | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the context and retrieve objects we're gonna use. renderer = ctx; QuantumManager qManager = renderer.getQuantumManager(); PixelBuffer pixels = renderer.getPixels(); Pixels metadata = renderer.getMetadata(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/GreyScaleStrategy.java/buggy/components/rendering/src/omeis/providers/re/GreyScaleStrategy.java |
System.err.println("Render wave."); | private void renderWave(RGBBuffer dataBuf, Plane2D plane, Color color, QuantumStrategy qs) throws QuantizationException { CodomainChain cc = renderer.getCodomainChain(); int x1, x2, discreteValue, pixelIndex; byte value; float alpha = color.getAlpha(... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/GreyScaleStrategy.java/buggy/components/rendering/src/omeis/providers/re/GreyScaleStrategy.java | |
public StatusItem getItemFromPresence(Presence presence) { // Handle offline presence if (presence == null) { return null; } Iterator statusItemIterator = dndList.iterator(); while (statusItemIterator.hasNext()) { StatusItem item = (StatusItem)statusItemItera... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/fea468feedc212a5d28808907b5dfa7da841d129/StatusBar.java/buggy/src/java/org/jivesoftware/spark/ui/status/StatusBar.java | ||
dndList.add(phone); | private void populateDndList() { final ImageIcon availableIcon = SparkRes.getImageIcon(SparkRes.GREEN_BALL); final ImageIcon awayIcon = SparkRes.getImageIcon(SparkRes.IM_AWAY); final ImageIcon dndIcon = SparkRes.getImageIcon(SparkRes.IM_DND); StatusItem online = new StatusItem(new Presen... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/fea468feedc212a5d28808907b5dfa7da841d129/StatusBar.java/buggy/src/java/org/jivesoftware/spark/ui/status/StatusBar.java | |
public void setNickname(String nickname){ | public void setNickname(String nickname) { | public void setNickname(String nickname){ nicknameLabel.setText(nickname); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/fea468feedc212a5d28808907b5dfa7da841d129/StatusBar.java/buggy/src/java/org/jivesoftware/spark/ui/status/StatusBar.java |
if (!failure) | if (!failure && !(arg0.getThis() instanceof StatefulServiceInterface) ) | public Object invoke(MethodInvocation arg0) throws Throwable { secSys.setCurrentDetails(); Boolean readOnly = (Boolean) ht.execute(new CheckReadOnlyAction(secSys)); if ( readOnly != null && readOnly.booleanValue()) { if (log.isDebugEnabled()) { log.debug("Tx r... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9f81640b646007bc314d887c6a377cb96911b12c/EventHandler.java/clean/components/server/src/ome/tools/hibernate/EventHandler.java |
{ tabs = new JTabbedPane(JTabbedPane.TOP, JTabbedPane.WRAP_TAB_LAYOUT); tabs.setAlignmentX(LEFT_ALIGNMENT); tabs.insertTab("Mapping", im.getIcon(IconManager.MAPPING), mappingPanel, null, POS_MAPPING); tabs.insertTab(control.getModelType()+" Model", im.getIcon(IconManager.GREYSCALE), modelPane, null, POS_MODEL); tabs.i... | { tabs = new JTabbedPane(JTabbedPane.TOP, JTabbedPane.WRAP_TAB_LAYOUT); tabs.setAlignmentX(LEFT_ALIGNMENT); tabs.insertTab("Mapping", im.getIcon(IconManager.MAPPING), mappingPanel, null, POS_MAPPING); tabs.insertTab(control.getModelType()+" Model", control.getModelIcon(), modelPane, null, POS_MODEL); tabs.insertTab("O... | private void buildGUI() { //create and initialize the tabs tabs = new JTabbedPane(JTabbedPane.TOP, JTabbedPane.WRAP_TAB_LAYOUT); tabs.setAlignmentX(LEFT_ALIGNMENT); tabs.insertTab("Mapping", im.getIcon(IconManager.MAPPING), mappingPanel, null, POS_MAPPING); tabs.insertTab(control.getModelType()... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ mappingPanel.setLayout(new BorderLayout(0, 0)); mappingPanel.add(quantumPane.getGRPane(), BorderLayout.NORTH); mappingPanel.add(quantumPane.getDomainPane(), BorderLayout.CENTER); } | { mappingPanel.setLayout(new BorderLayout(0, 0)); mappingPanel.add(quantumPane.getGRPane(), BorderLayout.NORTH); mappingPanel.add(quantumPane.getDomainPane(), BorderLayout.CENTER); } | private void buildMappingPanel() { mappingPanel.setLayout(new BorderLayout(0, 0)); mappingPanel.add(quantumPane.getGRPane(), BorderLayout.NORTH); mappingPanel.add(quantumPane.getDomainPane(), BorderLayout.CENTER); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ JMenu menu = new JMenu("Controls"); /* JMenuItem menuItem = new JMenuItem("Save", im.getIcon(IconManager.SAVE_SETTINGS)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.SAVE); menu.add(menuItem); */ JMenuItem menuItem = new JMenuItem("Reset defaults", im.getIcon(IconManager.RESET_DEFAULTS)); control.setMenuIt... | { JMenu menu = new JMenu("Controls"); JMenuItem menuItem = new JMenuItem("Save", im.getIcon(IconManager.SAVE_SETTINGS)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.SAVE); menu.add(menuItem); menuItem = new JMenuItem("Reset defaults", im.getIcon(IconManager.RESET_DEFAULTS)); control.setMenuItemListener(menuI... | private JMenu createMenu() { JMenu menu = new JMenu("Controls"); /* JMenuItem menuItem = new JMenuItem("Save", im.getIcon(IconManager.SAVE_SETTINGS)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.SAVE); menu.add(menuItem); */ JMenuItem menuItem = new JMenuItem("Reset defaults", im.get... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ JMenuBar menuBar = new JMenuBar(); menuBar.add(createModelMenu()); menuBar.add(createMenu()); return menuBar; } | { JMenuBar menuBar = new JMenuBar(); menuBar.add(createModelMenu()); menuBar.add(createMenu()); return menuBar; } | private JMenuBar createMenuBar() { JMenuBar menuBar = new JMenuBar(); menuBar.add(createModelMenu()); menuBar.add(createMenu()); return menuBar; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ JMenu menu = new JMenu("Model"); JMenuItem menuItem = new JMenuItem("GreyScale", im.getIcon(IconManager.GREYSCALE)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.GREY); menu.add(menuItem); menuItem = new JMenuItem("RGB", im.getIcon(IconManager.RGB)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.RG... | { JMenu menu = new JMenu("Model"); JMenuItem menuItem = new JMenuItem("GreyScale", im.getIcon(IconManager.GREYSCALE)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.GREY); menu.add(menuItem); menuItem = new JMenuItem("RGB", im.getIcon(IconManager.RGB)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.RG... | private JMenu createModelMenu() { JMenu menu = new JMenu("Model"); JMenuItem menuItem = new JMenuItem("GreyScale", im.getIcon(IconManager.GREYSCALE)); control.setMenuItemListener(menuItem, RenderingAgtCtrl.GREY); menu.add(menuItem); menuItem = new JMenuItem("RGB", im.getIcon(IconManager.RGB)); control.se... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ quantumPane = new QuantumPane(control); modelPane = control.getModelPane(); modelPane.buildComponent(); mappingPanel = new JPanel(); mappingPanel.setLayout(new BorderLayout(0, 10)); } | { quantumPane = new QuantumPane(control); modelPane = control.getModelPane(); modelPane.buildComponent(); mappingPanel = new JPanel(); mappingPanel.setLayout(new BorderLayout(0, 10)); } | private void initPanes() { quantumPane = new QuantumPane(control); modelPane = control.getModelPane(); modelPane.buildComponent(); mappingPanel = new JPanel(); mappingPanel.setLayout(new BorderLayout(0, 10)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
public ChannelButton(String text, Color color, int index, boolean selected) | public ChannelButton(String text, Color color, int index, boolean selected) | public ChannelButton(String text, Color color, int index, boolean selected) { super(text, color); if (color == null) throw new IllegalArgumentException("No color."); this.index = index; setSelected(selected); addMouseListener(new MouseAdapter... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b6a2f767451d338dea7821d39df96ac7151387a5/ChannelButton.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/util/ChannelButton.java |
if (color == null) throw new IllegalArgumentException("No color."); | public ChannelButton(String text, Color color, int index, boolean selected) { super(text, color); if (color == null) throw new IllegalArgumentException("No color."); this.index = index; setSelected(selected); addMouseListener(new MouseAdapter... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b6a2f767451d338dea7821d39df96ac7151387a5/ChannelButton.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/util/ChannelButton.java | |
if (!e.isPopupTrigger()) setChannelSelected(); | if (!e.isMetaDown()) setChannelSelected(); | private void onClick(MouseEvent e) { onReleased(e); if (!e.isPopupTrigger()) setChannelSelected(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b6a2f767451d338dea7821d39df96ac7151387a5/ChannelButton.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/util/ChannelButton.java |
private void onReleased(MouseEvent e) { if (e.isPopupTrigger()) { if (popupMenu == null) popupMenu = new ChannelButtonPopupMenu(this); popupMenu.show(this, e.getX(), e.getY()); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b6a2f767451d338dea7821d39df96ac7151387a5/ChannelButton.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/util/ChannelButton.java | ||
void showInfo() { firePropertyChange(INFO_PROPERTY, null, new Integer(index)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b6a2f767451d338dea7821d39df96ac7151387a5/ChannelButton.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/util/ChannelButton.java | ||
BaseModelUtils u = o.getUtils(); | public Object getById(final Class klazz, final int id) { return getHibernateTemplate().execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { OMEModel o = (OMEModel) session.load(klazz,id); BaseModelU... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/GenericDaoHibernate.java/buggy/components/server/src/ome/dao/hibernate/GenericDaoHibernate.java | |
BaseModelUtils u = o.getUtils(); | public Object doInHibernate(Session session) throws HibernateException { OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/GenericDaoHibernate.java/buggy/components/server/src/ome/dao/hibernate/GenericDaoHibernate.java | |
QuantumFactory.convertFamilyType(waves[w].getFamily()), | waves[w].getFamily(), | void initStrategies(QuantumDef qd, PixelsType type, ChannelBinding[] waves) { QuantumStrategy stg; double gMin, gMax; List channels = this.metadata.getChannels(); int w = 0; Channel channel; for (Iterator i = channels.iterator(); i.hasNext();) { channel = (Channel) i.next(); stg = QuantumFactory.getStr... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumManager.java/buggy/components/rendering/src/omeis/providers/re/QuantumManager.java |
public void accept(NodeVisitor iVisitor) { iVisitor.visitForNode(this); } | public void accept(NodeVisitor iVisitor) { iVisitor.visitForNode(this); } | public void accept(NodeVisitor iVisitor) { iVisitor.visitForNode(this); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/2f13ba47385b7584839c7f6f6f1abfee251cbe53/ForNode.java/clean/org/jruby/nodes/ForNode.java |
public RubyObject eval(Ruby ruby, RubyObject self) { RubyObject result; ruby.getBlock().push(getVarNode(), getBodyNode(), self); ruby.getIter().push(RubyIter.ITER_PRE); while (true) { try { String file = ruby.getSourceFile(); int line = ru... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/2f13ba47385b7584839c7f6f6f1abfee251cbe53/ForNode.java/clean/org/jruby/nodes/ForNode.java | ||
while (true) { try { String file = ruby.getSourceFile(); int line = ruby.getSourceLine(); ruby.getBlock().flags &= ~RubyBlock.BLOCK_D_SCOPE; RubyBlock tmpBlock = ArgsUtil.beginCallArgs(ruby); RubyObject recv = getIterNode().eval(ruby, self); ArgsUtil.endCallArgs(ruby, tmpBlock); ruby.setSourceFile(file); ruby.setSou... | try { while (true) { try { String file = ruby.getSourceFile(); int line = ruby.getSourceLine(); ruby.getBlock().flags &= ~RubyBlock.BLOCK_D_SCOPE; RubyBlock tmpBlock = ArgsUtil.beginCallArgs(ruby); RubyObject recv = getIterNode().eval(ruby, self); ArgsUtil.endCallArgs(ruby, tmpBlock); ruby.setSourceFile(file); ruby... | public RubyObject eval(Ruby ruby, RubyObject self) { RubyObject result; ruby.getBlock().push(getVarNode(), getBodyNode(), self); ruby.getIter().push(RubyIter.ITER_PRE); while (true) { try { String file = ruby.getSourceFile(); int line = ru... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/2f13ba47385b7584839c7f6f6f1abfee251cbe53/ForNode.java/clean/org/jruby/nodes/ForNode.java |
ruby.getIter().pop(); ruby.getBlock().pop(); return result; | public RubyObject eval(Ruby ruby, RubyObject self) { RubyObject result; ruby.getBlock().push(getVarNode(), getBodyNode(), self); ruby.getIter().push(RubyIter.ITER_PRE); while (true) { try { String file = ruby.getSourceFile(); int line = ru... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/2f13ba47385b7584839c7f6f6f1abfee251cbe53/ForNode.java/clean/org/jruby/nodes/ForNode.java | |
public LoadService() { | public LoadService(Ruby runtime) { | public LoadService() { super(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadService.java/clean/org/jruby/internal/runtime/load/LoadService.java |
this.runtime = runtime; | public LoadService() { super(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadService.java/clean/org/jruby/internal/runtime/load/LoadService.java | |
this.runtime = runtime; | public void init(Ruby runtime, List additionalDirectories) { this.runtime = runtime; for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { loadPath.add(RubyString.newString(runtime, (String)iter.next())); } if (runtime.getSafeLevel() == 0) { load... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadService.java/clean/org/jruby/internal/runtime/load/LoadService.java | |
if (!loadedFeatures.contains(file)) { | RubyString name = RubyString.newString(runtime, file); if (!loadedFeatures.contains(name)) { | public boolean require(String file) { if (!loadedFeatures.contains(file)) { if (load(file)) { loadedFeatures.add(file); return true; } } return false; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadService.java/clean/org/jruby/internal/runtime/load/LoadService.java |
loadedFeatures.add(file); | loadedFeatures.add(name); | public boolean require(String file) { if (!loadedFeatures.contains(file)) { if (load(file)) { loadedFeatures.add(file); return true; } } return false; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadService.java/clean/org/jruby/internal/runtime/load/LoadService.java |
p.setAcquisitionContext(new AcquisitionContext(-1l)); | AcquisitionContext ac = new AcquisitionContext(); ac.setId(-1l); p.setAcquisitionContext(ac); | public void testUnloadedEntityFieldOnDetachedPixels() throws Exception { // PREPARE ------------------------------------------------- // TODO or bool flag? p.setAcquisitionContext(new AcquisitionContext(-1l)); _up.saveAndReturnObject(p); flush(); clear(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/50ff3a771581d9f58121b05f50819d8474d33b6c/DetachedPixelsGraphTest.java/clean/components/server/test/ome/server/itests/update/DetachedPixelsGraphTest.java |
public RubyString findClassPath() { return null; | public RubyObject findClassPath() { FindClassPathResult arg = new FindClassPathResult(); arg.klass = this; arg.track = getRuby().getObjectClass(); arg.prev = null; if (getRuby().getObjectClass().getInstanceVariables() != null) { getRuby().getObjectClass().getInstanceVariables().foreach(new FindClassPathMapMethod(), ar... | public RubyString findClassPath() { return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
if (path != null) { | if (path == null) { | public RubyString getClassname() { RubyString path = null; RubyModule rbModule = this; while (rbModule.isIncluded() || rbModule.isSingleton()) { rbModule = ((RubyClass)rbModule).getSuperClass(); } if (rbModule == null) { rbModule = getRuby().g... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
path = rbModule.findClassPath(); | RubyObject tmp = rbModule.findClassPath(); | public RubyString getClassname() { RubyString path = null; RubyModule rbModule = this; while (rbModule.isIncluded() || rbModule.isSingleton()) { rbModule = ((RubyClass)rbModule).getSuperClass(); } if (rbModule == null) { rbModule = getRuby().g... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
/* if (path.isNil()) { | if (tmp.isNil()) { | public RubyString getClassname() { RubyString path = null; RubyModule rbModule = this; while (rbModule.isIncluded() || rbModule.isSingleton()) { rbModule = ((RubyClass)rbModule).getSuperClass(); } if (rbModule == null) { rbModule = getRuby().g... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
}*/ | } | public RubyString getClassname() { RubyString path = null; RubyModule rbModule = this; while (rbModule.isIncluded() || rbModule.isSingleton()) { rbModule = ((RubyClass)rbModule).getSuperClass(); } if (rbModule == null) { rbModule = getRuby().g... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
return path; | return (RubyString)tmp; | public RubyString getClassname() { RubyString path = null; RubyModule rbModule = this; while (rbModule.isIncluded() || rbModule.isSingleton()) { rbModule = ((RubyClass)rbModule).getSuperClass(); } if (rbModule == null) { rbModule = getRuby().g... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/12847c6fd28fea4e223d132ced46eb1b4cb9de9a/RubyModule.java/buggy/org/jruby/RubyModule.java |
public void execute() | public void execute(PInputEvent e) | public static PiccoloAction getZoomTo200Action(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_200_MODE); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_200_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public static PiccoloAction getZoomTo50Action(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_50_MODE); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_50_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public static PiccoloAction getZoomTo75Action(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_75_MODE); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
System.err.println("75%"); | public static PiccoloAction getZoomTo75Action(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_75_MODE); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java | |
public void execute() | public void execute(PInputEvent e) | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_75_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
System.err.println("75%"); | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_75_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java | |
public void execute() | public void execute(PInputEvent e) | public static PiccoloAction getZoomToActualAction(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_ACTUAL_MODE)... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_ACTUAL_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public static PiccoloAction getZoomToFitAction(final BrowserModel model) { PiccoloAction action = new PiccoloAction() { public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_TO_FIT_MODE); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
public void execute() | public void execute(PInputEvent e) | public void execute() { model.setCurrentMode(BrowserModel.ZOOM_MODE_NAME, BrowserMode.ZOOM_TO_FIT_MODE); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/PiccoloActionFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/events/PiccoloActionFactory.java |
return null; | return jid; | public String getUserNicknameFromJID(String jid) { ContactList contactList = SparkManager.getWorkspace().getContactList(); ContactItem item = contactList.getContactItemByJID(jid); if (item != null) { return item.getNickname(); } return null; } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/60b668500341a207c2b3902c27fd2e197a87eeee/UserManager.java/clean/src/java/org/jivesoftware/spark/UserManager.java |
_log = bc.getLog("IncludeDirective"); | public final Object build(DirectiveBuilder builder, BuildContext bc) throws BuildException { Broker broker = bc.getBroker(); // build configuration key names, since they're based // on the configured name of this directive _directiveName = builder.getName(); TEMPLATE_EXTENSIONS_NAME = _direc... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/3a2bd2c87dfec90fe1c78333d2dcc78e5cd3fe03/IncludeDirective.java/clean/webmacro/src/org/webmacro/directive/IncludeDirective.java | |
if (context.getCurrentLocation().indexOf(_strFilename) > -1) { String warning = context.getCurrentLocation() + " includes itself."; writeWarning(warning, context, out); | if (_log.loggingDebug() && context.getCurrentLocation().indexOf(_strFilename) > -1) { _log.warning(context.getCurrentLocation() + " includes itself."); | public void write(FastWriter out, Context context) throws PropertyException, IOException { Broker broker = context.getBroker(); // the filename arg passed to us was a Macro, so // evaluate and check it now if (_macFilename != null) { _strFilename = _macFilename.evaluate(context).toString(... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/3a2bd2c87dfec90fe1c78333d2dcc78e5cd3fe03/IncludeDirective.java/clean/webmacro/src/org/webmacro/directive/IncludeDirective.java |
if (_log.loggingDebug()) { _log.debug("Including '" + _strFilename + "' as " + (_type == TYPE_MACRO) ? "MACRO" : (_type == TYPE_TEMPLATE) ? "TEMPLATE" : (_type == TYPE_TEXT) ? "TEXT" : "UNKNOWN. Throwing exceptin"); } | public void write(FastWriter out, Context context) throws PropertyException, IOException { Broker broker = context.getBroker(); // the filename arg passed to us was a Macro, so // evaluate and check it now if (_macFilename != null) { _strFilename = _macFilename.evaluate(context).toString(... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/3a2bd2c87dfec90fe1c78333d2dcc78e5cd3fe03/IncludeDirective.java/clean/webmacro/src/org/webmacro/directive/IncludeDirective.java | |
availableCategories.setConverter(new IntegerConverter()); | private UIComponent getCategoryEditContainer() { String ref = ARTICLE_ITEM_BEAN_ID + "."; String bref = WFPage.CONTENT_BUNDLE + "."; HtmlPanelGrid p = WFPanelUtil.getFormPanel(3); p.setId(CATEGORY_EDITOR_ID); p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "available_categories"), WFUtil.getText(":"))); ... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/8d70e4da4fa13f2a274766be3657c947b48dfbeb/EditArticleBlock.java/clean/src/java/com/idega/block/article/component/EditArticleBlock.java | |
articleCategories.setConverter(new IntegerConverter()); | private UIComponent getCategoryEditContainer() { String ref = ARTICLE_ITEM_BEAN_ID + "."; String bref = WFPage.CONTENT_BUNDLE + "."; HtmlPanelGrid p = WFPanelUtil.getFormPanel(3); p.setId(CATEGORY_EDITOR_ID); p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "available_categories"), WFUtil.getText(":"))); ... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/8d70e4da4fa13f2a274766be3657c947b48dfbeb/EditArticleBlock.java/clean/src/java/com/idega/block/article/component/EditArticleBlock.java | |
removeEditor(); | public void onSelectedDisplay() { switch (model.getState()) { case DISCARDED: case SAVE: throw new IllegalStateException("This method cannot be " + "invoked in the DISCARDED, SAVE state."); } int editor = model.getEditorType(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/TreeViewerComponent.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java | |
} else { Browser browser = model.getSelectedBrowser(); if (browser != null) { TreeImageDisplay d = browser.getLastSelectedDisplay(); if (d != null && (d.getUserObject() instanceof ImageData)) { int index = EditorFactory.getEditorSelectedPane(); if (index == Editor.INFO_INDEX) EditorFactory.setEditorSelectedPane( Editor... | public void onSelectedDisplay() { switch (model.getState()) { case DISCARDED: case SAVE: throw new IllegalStateException("This method cannot be " + "invoked in the DISCARDED, SAVE state."); } int editor = model.getEditorType(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/TreeViewerComponent.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java | |
/* Editor editor = model.getEditor(); if (editor != null) { if (editor.hasDataToSave()) { IconManager icons = IconManager.getInstance(); EditorSaverDialog d = new EditorSaverDialog(view, icons.getIcon(IconManager.QUESTION)); d.addPropertyChangeListener( EditorSaverDialog.SAVING_DATA_EDITOR_PROPERTY, controller); UIUtil... | public void removeEditor() { switch (model.getState()) { case DISCARDED: //case SAVE: throw new IllegalStateException("This method cannot be " + "invoked in the DISCARDED, SAVE state."); } /* Editor editor = model.getEditor(... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/TreeViewerComponent.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java | |
"Confirmation", JOptionPane.YES_NO_OPTION); | "Confirmation", JOptionPane.YES_NO_OPTION); | public void closeActiveRoom() { ChatRoom room = null; try { room = getActiveChatRoom(); } catch (ChatRoomNotFoundException e1) { // AgentLog.logError("Chat room not found", e1); } // Confirm end session boolean isGroupChat = room.getChatType() =... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/2b67e7302b05b2cf189de97bd46023342930e7c6/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
Icon icon = room.getTabIcon(); | final ChatRoomImpl chatRoomImpl = (ChatRoomImpl)room; Presence presence = chatRoomImpl.getPresence(); Icon icon = SparkManager.getUserManager().getIconFromPresence(presence); | public void useTabDefault(final ChatRoom room) { // Check if room is stale boolean containsRoom = getStaleChatRooms().contains(room); if (containsRoom) { return; } final int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(ind... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/2b67e7302b05b2cf189de97bd46023342930e7c6/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
{ control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName); control.setPresentation(presentation); } | { control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName); control.setPresentation(presentation); } | private void buildPresentation(String imageName) { control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName); control.setPresentation(presentation); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ for (int i = 0; i < pxsDims.sizeW; i++) channelData[i] = new ChannelData(i, i, i, "Wavelenth "+i, i, null); canUpdate = false; } | { for (int i = 0; i < pxsDims.sizeW; i++) channelData[i] = new ChannelData(i, i, i, "Wavelenth "+i, i, null); canUpdate = false; } | private void defaultInitChannelData() { for (int i = 0; i < pxsDims.sizeW; i++) channelData[i] = new ChannelData(i, i, i, "Wavelenth "+i, i, null); canUpdate = false; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ if (e instanceof ImageLoaded) handleImageLoaded((ImageLoaded) e); else if (e instanceof DisplayRendering) presentation.deIconify(); } | { if (e instanceof ImageLoaded) handleImageLoaded((ImageLoaded) e); else if (e instanceof DisplayRendering) presentation.deIconify(); } | public void eventFired(AgentEvent e) { if (e instanceof ImageLoaded) handleImageLoaded((ImageLoaded) e); else if (e instanceof DisplayRendering) presentation.deIconify(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); curImageID = request.getImageID(); curPixelsID = request.getPixelsID(); initChannelData(); if (presentation != null) removePresentation()... | { LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); curImageID = request.getImageID(); curPixelsID = request.getPixelsID(); initChannelData(); if (presentation != null) removePresentation()... | private void handleImageLoaded(ImageLoaded response) { LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); curImageID = request.getImageID(); curPixelsID = request.getPixelsID(); init... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ try { DataManagementService ds = registry.getDataManagementService(); channelData = ds.getChannelData(curImageID); if (channelData == null) defaultInitChannelData(); else { if (channelData.length != pxsDims.sizeW) defaultInitChannelData(); } } catch(DSAccessException dsae) { String s = "Can't retrieve the channel da... | { try { DataManagementService ds = registry.getDataManagementService(); channelData = ds.getChannelData(curImageID); if (channelData.length != pxsDims.sizeW || channelData == null) defaultInitChannelData(); } catch(DSAccessException dsae) { String s = "Can't retrieve the channel data for "+curImageID+"."; registry.getL... | void initChannelData() { try { DataManagementService ds = registry.getDataManagementService(); channelData = ds.getChannelData(curImageID); if (channelData == null) defaultInitChannelData(); else { if (channelData.length != pxsDims.sizeW) defaultInitChannelData(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
} } | } catch(DSOutOfServiceException dsose) { ServiceActivationRequest request = new ServiceActivationRequest( ServiceActivationRequest.DATA_SERVICES); registry.getEventBus().post(request); } } | void initChannelData() { try { DataManagementService ds = registry.getDataManagementService(); channelData = ds.getChannelData(curImageID); if (channelData == null) defaultInitChannelData(); else { if (channelData.length != pxsDims.sizeW) defaultInitChannelData(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ RenderImage event = new RenderImage(curPixelsID); registry.getEventBus().post(event); } | { RenderImage event = new RenderImage(curPixelsID); registry.getEventBus().post(event); } | private void refreshImage() { RenderImage event = new RenderImage(curPixelsID); registry.getEventBus().post(event); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ control.disposeDialogs(); presentation.dispose(); control = null; presentation = null; } | { control.disposeDialogs(); presentation.dispose(); control = null; presentation = null; } | private void removePresentation() { control.disposeDialogs(); presentation.dispose(); control = null; presentation = null; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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