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coconut_java2006

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if (ChainBuilderAgent.DEBUG) System.err.println("starting mmodule target link..."+modLink);
private void startModuleTargetLink(ModuleLinkTarget modLink) { moduleLinkOriginTarget = modLink; //System.err.println("starting mmodule target link..."+modLink); moduleLink = new ModuleLink(linkLayer,moduleLinkOriginTarget); moduleLink.setPickable(false); linkState = LINKING_MODULE_TARGETS; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainCreationEventHandler.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java
if (ChainBuilderAgent.DEBUG) { System.err.println("mouse pressing and starting link"); System.err.println("start param link. link state is LINKING_PARAMS"); }
private void startParamLink(FormalParameter param) { ////System.err.println("mouse pressing and starting link"); linkOrigin = param; link = new ParamLink(); linkLayer.addChild(link); link.setStartParam(linkOrigin); link.setPickable(false); //System.err.println("start param link. link state is LINKING_PARAMS");...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainCreationEventHandler.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java
private void startParamLink(FormalParameter param) { ////System.err.println("mouse pressing and starting link"); linkOrigin = param; link = new ParamLink(); linkLayer.addChild(link); link.setStartParam(linkOrigin); link.setPickable(false); //System.err.println("start param link. link state is LINKING_PARAMS");...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainCreationEventHandler.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java
if (index == -1) return;
public void copyPlaneArea(PlaneArea pa, int newZ, int newT) { int index = presentation.getToolBar().getSelectedIndex(); abstraction.copyPlaneArea(pa, index, newZ, newT); if (newT == getCurrentT() && newZ == getCurrentZ()) { PlaneArea p = abstraction.getPlaneArea(newZ, newT, index)...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/82a0758855f6c1b189a9820fbc91ef09f7c7863a/ROIAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/ROIAgtCtrl.java
int index = presentation.getToolBar().getSelectedIndex(); if (index == -1) return;
public void removeAllPlaneAreas() { abstraction.removeAllPlaneAreas(); drawingCanvas.clearPreviousView(); drawingCanvas.repaint(); ToolBarMng tbm = presentation.getToolBar().getManager(); tbm.removeCurrentPlane(getCurrentZ(), getCurrentT()); ScreenROI roi = getScreenROI(...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/82a0758855f6c1b189a9820fbc91ef09f7c7863a/ROIAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/ROIAgtCtrl.java
return setInstanceVariable(name, value, "Insecure: can't set constant",
IRubyObject result = setInstanceVariable(name, value, "Insecure: can't set constant",
public IRubyObject setConstant(String name, IRubyObject value) { return setInstanceVariable(name, value, "Insecure: can't set constant", "class/module"); }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d27bd5bcb36c7670bce31c6a2a4c22b11fdfa5c4/RubyModule.java/buggy/src/org/jruby/RubyModule.java
if (value instanceof RubyModule) { RubyModule module = (RubyModule)value; if (module.getBaseName() == null) { module.setBaseName(name); } } return result;
public IRubyObject setConstant(String name, IRubyObject value) { return setInstanceVariable(name, value, "Insecure: can't set constant", "class/module"); }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d27bd5bcb36c7670bce31c6a2a4c22b11fdfa5c4/RubyModule.java/buggy/src/org/jruby/RubyModule.java
public UserCredentials getUserCredentials()
public UserCredentials getUserCredentials(final boolean init)
public UserCredentials getUserCredentials() { //First off, let's make sure that this.open() has already been called. //If not we return to prevent deadlock. if (!isValid) return null; //Construct request of mehtod execution. final SplashScreenFuture future = new SplashScreenFuture(); Runnab...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/84042cbca2e8aeaf65ca18c85ea2224ea4c04d55/SplashScreenProxy.java/clean/SRC/org/openmicroscopy/shoola/env/ui/SplashScreenProxy.java
public void run() { servant.collectUserCredentials(future); }
public void run() { servant.collectUserCredentials(future, init); }
public UserCredentials getUserCredentials() { //First off, let's make sure that this.open() has already been called. //If not we return to prevent deadlock. if (!isValid) return null; //Construct request of mehtod execution. final SplashScreenFuture future = new SplashScreenFuture(); Runnab...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/84042cbca2e8aeaf65ca18c85ea2224ea4c04d55/SplashScreenProxy.java/clean/SRC/org/openmicroscopy/shoola/env/ui/SplashScreenProxy.java
public void run() { servant.collectUserCredentials(future); }
public void run() { servant.collectUserCredentials(future, init); }
public void run() { servant.collectUserCredentials(future); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/84042cbca2e8aeaf65ca18c85ea2224ea4c04d55/SplashScreenProxy.java/clean/SRC/org/openmicroscopy/shoola/env/ui/SplashScreenProxy.java
out.println(pkg == null ? "All Packages" : pkg.getName());
out.println(pkg == null ? "All Packages" : generatePackageName(pkg));
private void generateClassList(Package pkg) throws IOException { String filename; Collection classes; if (pkg == null) { filename = "frame-classes.html"; classes = coverage.getClassesSortedByBasename().values(); } else { filename = "frame-classes-" + pkg.getName() + ".html"; classes = pkg.getClasses(); ...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
out.print(pkg == null ? "All Packages" : pkg.getName());
out.print(pkg == null ? "All Packages" : generatePackageName(pkg));
private void generateOverview(Package pkg) throws IOException { String filename; if (pkg == null) { filename = "frame-summary.html"; } else { filename = "frame-summary-" + pkg.getName() + ".html"; } File file = new File(outputDir, filename); PrintStream out = null; try { out = new PrintStream(new File...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
private void generateOverview(Package pkg) throws IOException { String filename; if (pkg == null) { filename = "frame-summary.html"; } else { filename = "frame-summary-" + pkg.getName() + ".html"; } File file = new File(outputDir, filename); PrintStream out = null; try { out = new PrintStream(new File...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
+ url2 + "\"' target=\"summary\">" + pkg.getName()
+ url2 + "\"' target=\"summary\">" + generatePackageName(pkg)
private void generatePackageList() throws IOException { File file = new File(outputDir, "frame-packages.html"); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out.println("<html>"); out.println("<head>"); out.println("<title>Coverage Report</title>"); out .println("<...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
if (clazz.getPackageName() != null)
String classPackageName = clazz.getPackageName(); if ((classPackageName != null) && classPackageName.length() > 0)
private void generateSourceFile(Clazz clazz) throws IOException { String filename = clazz.getLongName() + ".html"; File file = new File(outputDir, filename); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out.println("<html>"); out.println("<head>"); out.println("<title>C...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
+ "\"'>" + pkg.getName() + "</a></td>");
+ "\"'>" + generatePackageName(pkg) + "</a></td>");
private String generateTableRowForPackage(Package pkg) { StringBuffer ret = new StringBuffer(); String url1 = "frame-summary-" + pkg.getName() + ".html"; String url2 = "frame-classes-" + pkg.getName() + ".html"; double lineCoverage = pkg.getLineCoverageRate(); double branchCoverage = pkg.getBranchCoverageRate(); ...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/bc68f2316e279affb4a8c05a3d93558ff5689828/HTMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java
long start = System.currentTimeMillis();
if (ChainBuilderAgent.DEBUG) { start = System.currentTimeMillis(); }
public synchronized Collection getChainExecutions() { // if we're done, go for it. if (chainExecutions != null) { return chainExecutions.getExecutions(); } if (gettingExecutions == false) { long start = System.currentTimeMillis(); gettingExecutions = true; retrieveChainExecutions(); gettingExecutions...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainDataManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/ChainDataManager.java
long getTime = System.currentTimeMillis()-start; System.err.println("time for executions is "+getTime);
if (ChainBuilderAgent.DEBUG) { long getTime = System.currentTimeMillis()-start; System.err.println("time for executions is "+getTime); }
public synchronized Collection getChainExecutions() { // if we're done, go for it. if (chainExecutions != null) { return chainExecutions.getExecutions(); } if (gettingExecutions == false) { long start = System.currentTimeMillis(); gettingExecutions = true; retrieveChainExecutions(); gettingExecutions...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainDataManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/ChainDataManager.java
long start = System.currentTimeMillis();
if (ChainBuilderAgent.DEBUG) { start = System.currentTimeMillis(); }
public synchronized Collection getChains() { Collection res = null; // if we're done, go for it. if (chainHash != null && chainHash.size() > 0) { res = chainHash.values(); } else { if (gettingChains == false) { long start = System.currentTimeMillis(); gettingChains = true; retrieveChains(); gett...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainDataManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/ChainDataManager.java
long end = System.currentTimeMillis()-start; System.err.println("time for retrieving chains.. "+end);
if (ChainBuilderAgent.DEBUG) { long end = System.currentTimeMillis()-start; System.err.println("time for retrieving chains.. "+end); }
public synchronized Collection getChains() { Collection res = null; // if we're done, go for it. if (chainHash != null && chainHash.size() > 0) { res = chainHash.values(); } else { if (gettingChains == false) { long start = System.currentTimeMillis(); gettingChains = true; retrieveChains(); gett...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a806bf744289bb0eed666b235887c8680d549d94/ChainDataManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/chainbuilder/ChainDataManager.java
return Collections.EMPTY_LIST;
return EMPTY_LIST;
public List childNodes() { return Collections.EMPTY_LIST; }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/UndefNode.java/buggy/src/org/jruby/ast/UndefNode.java
PlayerManager manager = new PlayerManager(this, control, max,
manager = new PlayerManager(this, control, max,
private void init(ViewerCtrl control, int maxT, int maxZ, MovieSettings settings) { int max = maxT; int s = settings.getStartT(), e = settings.getEndT(); if (maxT == 0) { s = settings.getStartZ(); e = settings.getEndZ(); max = maxZ; ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0a711d50cfe02a185f8d314b378ca4c49e92ab2f/Player.java/clean/SRC/org/openmicroscopy/shoola/agents/viewer/movie/Player.java
if ((broadcast || message.getType() == Message.Type.NORMAL) && message.getBody() != null) {
if ((broadcast || (message.getType() == Message.Type.NORMAL) || message.getType() == Message.Type.HEADLINE) && message.getBody() != null) {
public void processPacket(final Packet packet) { SwingUtilities.invokeLater(new Runnable() { public void run() { final Message message = (Message)packet; boolean broadcast = message.getProperty("broadcast") != null; if ((broadcast || message.getType() =...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/7645851bdaa2a933966642360f8bb4b56e708043/BroadcastPlugin.java/buggy/src/java/org/jivesoftware/sparkimpl/plugin/alerts/BroadcastPlugin.java
if ((broadcast || message.getType() == Message.Type.NORMAL) && message.getBody() != null) {
if ((broadcast || (message.getType() == Message.Type.NORMAL) || message.getType() == Message.Type.HEADLINE) && message.getBody() != null) {
public void run() { final Message message = (Message)packet; boolean broadcast = message.getProperty("broadcast") != null; if ((broadcast || message.getType() == Message.Type.NORMAL) && message.getBody() != null) { showAlert((Message)packet); ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/7645851bdaa2a933966642360f8bb4b56e708043/BroadcastPlugin.java/buggy/src/java/org/jivesoftware/sparkimpl/plugin/alerts/BroadcastPlugin.java
pathToTestOutput, "--source", pathToSourceCode };
pathToTestOutput, pathToSourceCode };
public void testXMLReportValidity() throws Exception { String[] args; // Serialize the current coverage data to disk ProjectData.saveGlobalProjectData(); String dataFileName = CoverageDataFileHandler.getDefaultDataFile() .getAbsolutePath(); // Then we need to generate the XML report args = new String[] { "--f...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/c26f5a170c752d9d1d5b884dd7eb60b982637269/XMLReportTest.java/buggy/cobertura/test/net/sourceforge/cobertura/reporting/xml/XMLReportTest.java
public void finished() { if (data != null) { searchResults.showUsersFound(data); } else { JOptionPane.showMessageDialog(searchResults, Res.getString("message.no.results.found"), Res.getString("title.notification"), JOptionPan...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/4639786a0c9bdc8bd2c5848f7b9e59c4d32dc2e5/SearchForm.java/buggy/src/java/org/jivesoftware/sparkimpl/search/users/SearchForm.java
} catch (IOException e)
} catch (Exception e)
public byte[] calculateMessageDigest() { errorIfNotLoaded(); try { return buffer.calculateMessageDigest(); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public byte[] calculateMessageDigest() { errorIfNotLoaded(); try { return buffer.calculateMessageDigest(); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return null;
public byte[] calculateMessageDigest() { errorIfNotLoaded(); try { return buffer.calculateMessageDigest(); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
MappedByteBuffer plane;
MappedByteBuffer plane = null;
public byte[] getPlane(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); MappedByteBuffer plane; try { plane = buffer.getPlane(arg0, arg1, arg2); } catch (Exception e) { throw new RuntimeException(e); } return bufferAsByteArrayWithExceptionIfNull( plane ); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
throw new RuntimeException(e);
handleException(e);
public byte[] getPlane(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); MappedByteBuffer plane; try { plane = buffer.getPlane(arg0, arg1, arg2); } catch (Exception e) { throw new RuntimeException(e); } return bufferAsByteArrayWithExceptionIfNull( plane ); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return bufferAsByteArrayWithExceptionIfNull( plane );
return bufferAsByteArrayWithExceptionIfNull(plane);
public byte[] getPlane(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); MappedByteBuffer plane; try { plane = buffer.getPlane(arg0, arg1, arg2); } catch (Exception e) { throw new RuntimeException(e); } return bufferAsByteArrayWithExceptionIfNull( plane ); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (DimensionsOutOfBoundsException e)
} catch (Exception e)
public Long getPlaneOffset(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); try { return buffer.getPlaneOffset(arg0, arg1, arg2); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public Long getPlaneOffset(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); try { return buffer.getPlaneOffset(arg0, arg1, arg2); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return null;
public Long getPlaneOffset(Integer arg0, Integer arg1, Integer arg2) { errorIfNotLoaded(); try { return buffer.getPlaneOffset(arg0, arg1, arg2); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
MappedByteBuffer region;
MappedByteBuffer region = null;
public byte[] getRegion(Integer arg0, Long arg1) { errorIfNotLoaded(); MappedByteBuffer region; try { region = buffer.getRegion(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (IOException e)
} catch (Exception e)
public byte[] getRegion(Integer arg0, Long arg1) { errorIfNotLoaded(); MappedByteBuffer region; try { region = buffer.getRegion(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public byte[] getRegion(Integer arg0, Long arg1) { errorIfNotLoaded(); MappedByteBuffer region; try { region = buffer.getRegion(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return bufferAsByteArrayWithExceptionIfNull( region );
return bufferAsByteArrayWithExceptionIfNull(region);
public byte[] getRegion(Integer arg0, Long arg1) { errorIfNotLoaded(); MappedByteBuffer region; try { region = buffer.getRegion(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
MappedByteBuffer row;
MappedByteBuffer row = null;
public byte[] getRow(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); MappedByteBuffer row; try { row = buffer.getRow(arg0, arg1, arg2, arg3); } catch (IOException e) { e.printStackTrace(); throw new R...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (IOException e)
} catch (Exception e)
public byte[] getRow(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); MappedByteBuffer row; try { row = buffer.getRow(arg0, arg1, arg2, arg3); } catch (IOException e) { e.printStackTrace(); throw new R...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public byte[] getRow(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); MappedByteBuffer row; try { row = buffer.getRow(arg0, arg1, arg2, arg3); } catch (IOException e) { e.printStackTrace(); throw new R...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (DimensionsOutOfBoundsException e)
} catch (Exception e)
public Long getRowOffset(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { return buffer.getRowOffset(arg0, arg1, arg2, arg3); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public Long getRowOffset(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { return buffer.getRowOffset(arg0, arg1, arg2, arg3); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return null;
public Long getRowOffset(Integer arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { return buffer.getRowOffset(arg0, arg1, arg2, arg3); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
MappedByteBuffer stack;
MappedByteBuffer stack = null;
public byte[] getStack(Integer arg0, Integer arg1) { errorIfNotLoaded(); MappedByteBuffer stack; try { stack = buffer.getStack(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented e...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (IOException e)
} catch (Exception e)
public byte[] getStack(Integer arg0, Integer arg1) { errorIfNotLoaded(); MappedByteBuffer stack; try { stack = buffer.getStack(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented e...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public byte[] getStack(Integer arg0, Integer arg1) { errorIfNotLoaded(); MappedByteBuffer stack; try { stack = buffer.getStack(arg0, arg1); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented e...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (DimensionsOutOfBoundsException e)
} catch (Exception e)
public Long getStackOffset(Integer arg0, Integer arg1) { errorIfNotLoaded(); try { return buffer.getStackOffset(arg0, arg1); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exce...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public Long getStackOffset(Integer arg0, Integer arg1) { errorIfNotLoaded(); try { return buffer.getStackOffset(arg0, arg1); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exce...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return null;
public Long getStackOffset(Integer arg0, Integer arg1) { errorIfNotLoaded(); try { return buffer.getStackOffset(arg0, arg1); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exce...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
MappedByteBuffer timepoint;
MappedByteBuffer timepoint = null;
public byte[] getTimepoint(Integer arg0) { errorIfNotLoaded(); MappedByteBuffer timepoint; try { timepoint = buffer.getTimepoint(arg0); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented excep...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (IOException e)
} catch (Exception e)
public byte[] getTimepoint(Integer arg0) { errorIfNotLoaded(); MappedByteBuffer timepoint; try { timepoint = buffer.getTimepoint(arg0); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented excep...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public byte[] getTimepoint(Integer arg0) { errorIfNotLoaded(); MappedByteBuffer timepoint; try { timepoint = buffer.getTimepoint(arg0); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented excep...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return bufferAsByteArrayWithExceptionIfNull( timepoint );
return bufferAsByteArrayWithExceptionIfNull(timepoint);
public byte[] getTimepoint(Integer arg0) { errorIfNotLoaded(); MappedByteBuffer timepoint; try { timepoint = buffer.getTimepoint(arg0); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented excep...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (DimensionsOutOfBoundsException e)
} catch (Exception e)
public Long getTimepointOffset(Integer arg0) { errorIfNotLoaded(); try { return buffer.getTimepointOffset(arg0); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public Long getTimepointOffset(Integer arg0) { errorIfNotLoaded(); try { return buffer.getTimepointOffset(arg0); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
return null;
public Long getTimepointOffset(Integer arg0) { errorIfNotLoaded(); try { return buffer.getTimepointOffset(arg0); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (BufferOverflowException e)
} catch (Exception e)
public void setPlane(byte[] arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { buffer.setPlane(arg0, arg1, arg2, arg3); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimp...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public void setPlane(byte[] arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { buffer.setPlane(arg0, arg1, arg2, arg3); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimp...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (BufferOverflowException e)
} catch (Exception e)
public void setRegion(Integer arg0, Long arg1, byte[] arg2) { errorIfNotLoaded(); try { buffer.setRegion(arg0, arg1, arg2); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.")...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public void setRegion(Integer arg0, Long arg1, byte[] arg2) { errorIfNotLoaded(); try { buffer.setRegion(arg0, arg1, arg2); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.")...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
throw new RuntimeException("Not implemented yet.");
try { ByteBuffer buf = ByteBuffer.wrap(arg0); buffer.setRow(buf, arg1, arg2, arg3, arg4); } catch (Exception e) { handleException(e); }
public void setRow(byte[] arg0, Integer arg1, Integer arg2, Integer arg3, Integer arg4) { errorIfNotLoaded(); // FIXME buffer.setRow(arg0, arg1, arg2, arg3, arg4); throw new RuntimeException("Not implemented yet."); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (BufferOverflowException e)
} catch (Exception e)
public void setStack(byte[] arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { buffer.setStack(arg0, arg1, arg2, arg3); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimp...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public void setStack(byte[] arg0, Integer arg1, Integer arg2, Integer arg3) { errorIfNotLoaded(); try { buffer.setStack(arg0, arg1, arg2, arg3); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimp...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
} catch (BufferOverflowException e)
} catch (Exception e)
public void setTimepoint(byte[] arg0, Integer arg1) { errorIfNotLoaded(); try { buffer.setTimepoint(arg0, arg1); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (IOException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } catch (DimensionsOutOfBoundsException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception.");
handleException(e);
public void setTimepoint(byte[] arg0, Integer arg1) { errorIfNotLoaded(); try { buffer.setTimepoint(arg0, arg1); } catch (BufferOverflowException e) { e.printStackTrace(); throw new RuntimeException("Unimplemented exception."); } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/65a3b02bf58c957397c6c8ccacffb5f328940fc9/RawPixelsBean.java/clean/components/server/src/ome/services/RawPixelsBean.java
if (response.isOnOff()) presentation.deIconify(); else {
if (response.isOnOff()) { if (presentation != null) presentation.deIconify(); } else {
private void handleDisplayViewerRelatedAgents(DisplayViewerRelatedAgent response) { if (response.isOnOff()) presentation.deIconify(); else { if (presentation != null) removePresentation(); } }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/821d4f7a003d25f9dccd2eaf7e886336cbdefc95/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
nodesToReset = new HashSet();
BrowserUI() { sorter = new ViewerSorter(); listener = new TreeExpansionListener() { public void treeCollapsed(TreeExpansionEvent e) { onNodeNavigation(e, false); } public void treeExpanded(TreeExpansionEvent e) { onNodeNavigation(e, tru...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
List expanded = new ArrayList();
private void buildTreeNode(TreeImageDisplay parent, Collection nodes, DefaultTreeModel tm) { if (nodes.size() == 0) { tm.insertNodeInto(new DefaultMutableTreeNode(EMPTY_MSG), parent, parent.getChildCount()); return; } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
expanded.add(display);
private void buildTreeNode(TreeImageDisplay parent, Collection nodes, DefaultTreeModel tm) { if (nodes.size() == 0) { tm.insertNodeInto(new DefaultMutableTreeNode(EMPTY_MSG), parent, parent.getChildCount()); return; } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
} else reloadRoot = false;
}
private void buildTreeNode(TreeImageDisplay parent, Collection nodes, DefaultTreeModel tm) { if (nodes.size() == 0) { tm.insertNodeInto(new DefaultMutableTreeNode(EMPTY_MSG), parent, parent.getChildCount()); return; } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
void clearTree() { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); root.removeAllChildren(); root.removeAllChildrenDisplay(); buildEmptyNode(root); dtm.reload(); collapsePath(root); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
private void loadGoIntoTree() { DefaultTreeModel dtm = (DefaultTreeModel) goIntoTree.getModel(); DefaultMutableTreeNode r = (DefaultMutableTreeNode) dtm.getRoot(); TreeImageDisplay d = model.getLastSelectedDisplay(); r.removeAllChildren(); TreeImageDisplay copy = d.copy(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
void removeNodes(List nodes, TreeImageDisplay parentDisplay) { if (parentDisplay == null) parentDisplay = getTreeRoot(); Iterator i = nodes.iterator(); TreeImageDisplay node; TreeImageDisplay parent; DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); whil...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
void selectFoundNode(TreeImageDisplay node) { TreePath path = new TreePath(node.getPath()); treeDisplay.setSelectionPath(path); TreeCellRenderer renderer = (TreeCellRenderer) treeDisplay.getCellRenderer(); //treeDisplay.requestFocus(); renderer.getTreeCellRendererCom...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
void setLeavesViews(Set nodes, TreeImageSet parent) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); parent.removeAllChildren(); parent.setChildrenLoaded(Boolean.TRUE); if (nodes.size() != 0) { Iterator i = nodes.iterator(); while (i.hasNext())...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
void setSortedNodes(List nodes, TreeImageDisplay parentNode) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); parentNode.removeAllChildren(); Iterator i = nodes.iterator(); boolean b = (parentNode.equals(dtm.getRoot())); TreeImageDisplay child; while ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
void setSortedNodes(List nodes, TreeImageDisplay parentNode) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); parentNode.removeAllChildren(); Iterator i = nodes.iterator(); boolean b = (parentNode.equals(dtm.getRoot())); TreeImageDisplay child; while ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
void setViews(Set nodes) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); root.removeAllChildren(); root.setChildrenLoaded(Boolean.TRUE); root.setExpanded(true); dtm.reload(); if (nodes.s...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
void setViews(Set nodes) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); root.removeAllChildren(); root.setChildrenLoaded(Boolean.TRUE); root.setExpanded(true); dtm.reload(); if (nodes.s...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
void setViews(Set nodes) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); root.removeAllChildren(); root.setChildrenLoaded(Boolean.TRUE); root.setExpanded(true); dtm.reload(); if (nodes.s...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
Iterator j = nodesToReset.iterator(); while (j.hasNext()) { setExpandedParent((TreeImageDisplay) j.next(), true); }
void setViews(Set nodes) { DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); root.removeAllChildren(); root.setChildrenLoaded(Boolean.TRUE); root.setExpanded(true); dtm.reload(); if (nodes.s...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
boolean reload = false;
void sortNodes(int type) { sorter.setByDate(type == Browser.SORT_NODES_BY_DATE); DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); boolean reload = false; Set children = root.getChildrenDisplay(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
if (!reload) reload = reloadRoot;
void sortNodes(int type) { sorter.setByDate(type == Browser.SORT_NODES_BY_DATE); DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); boolean reload = false; Set children = root.getChildrenDisplay(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
void sortNodes(int type) { sorter.setByDate(type == Browser.SORT_NODES_BY_DATE); DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); boolean reload = false; Set children = root.getChildrenDisplay(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
reloadRoot = true;
Iterator j = nodesToReset.iterator(); while (j.hasNext()) { setExpandedParent((TreeImageDisplay) j.next(), true); }
void sortNodes(int type) { sorter.setByDate(type == Browser.SORT_NODES_BY_DATE); DefaultTreeModel dtm = (DefaultTreeModel) treeDisplay.getModel(); TreeImageDisplay root = (TreeImageDisplay) dtm.getRoot(); boolean reload = false; Set children = root.getChildrenDisplay(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9e74eb87688bcf709c72b37a05e54a0314b1974e/BrowserUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserUI.java
showGraphicSelection(); break;
mng.showGraphicSelection(); break;
public void actionPerformed(ActionEvent e) { int index = Integer.parseInt(e.getActionCommand()); try { switch (index) { case SAVE: mng.saveResult(); break; case GRAPHIC: showGraphicSelection(); break; case...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3db37517e6873d11567ee5822e769ab058e1abed/BottomBarMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/roi/results/stats/BottomBarMng.java
return Collections.EMPTY_LIST;
return EMPTY_LIST;
public List childNodes() { return Collections.EMPTY_LIST; }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/LocalVarNode.java/clean/src/org/jruby/ast/LocalVarNode.java
RubyMatchData result = (RubyMatchData)matcher.search(getRuby(), str, pos);
RubyObject result = matcher.search(getRuby(), str, pos);
public int m_search(RubyObject target, int pos) {// RubyString str = RubyString.m_as_str(target); String str = ((RubyString)target).getValue(); if (pos >= str.length()) { return -1; } recompileIfNeeded(); RubyMatchData result = (RubyMatchData)matcher.search(getRu...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/896113b9a8117e7c4e8677cee39ccc8ad730fdcf/RubyRegexp.java/clean/org/jruby/RubyRegexp.java
return result.matchStartPosition();
return result instanceof RubyMatchData ? ((RubyMatchData)result).matchStartPosition() : -1;
public int m_search(RubyObject target, int pos) {// RubyString str = RubyString.m_as_str(target); String str = ((RubyString)target).getValue(); if (pos >= str.length()) { return -1; } recompileIfNeeded(); RubyMatchData result = (RubyMatchData)matcher.search(getRu...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/896113b9a8117e7c4e8677cee39ccc8ad730fdcf/RubyRegexp.java/clean/org/jruby/RubyRegexp.java
private void buildPresentation(String imageName)
private void buildPresentation()
private void buildPresentation(String imageName) { control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName); control.setPresentation(presentation); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName);
presentation = new RenderingAgtUIF(control, registry, curImageName);
private void buildPresentation(String imageName) { control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry, imageName); control.setPresentation(presentation); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
if (presentation != null) presentation.deIconify();
if (presentation == null) { initChannelData(); buildPresentation(); } presentation.deIconify();
private void handleDisplayViewerRelatedAgents(DisplayViewerRelatedAgent response) { if (response.isOnOff()) { if (presentation != null) presentation.deIconify(); } else { if (presentation != null) removePresentation(); } ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
initChannelData();
curImageName = request.getImageName();
private void handleImageLoaded(ImageLoaded response) { LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); curImageID = request.getImageID(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
buildPresentation(request.getImageName());
private void handleImageLoaded(ImageLoaded response) { LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); curImageID = request.getImageID(); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
RenderImage event = new RenderImage(curPixelsID); registry.getEventBus().post(event);
registry.getEventBus().post(new RenderImage(curPixelsID));
private void refreshImage() { RenderImage event = new RenderImage(curPixelsID); registry.getEventBus().post(event); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
control = null;
private void removePresentation() { control.disposeDialogs(); presentation.dispose(); control = null; presentation = null; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
control = new RenderingAgtCtrl(this);
public void setContext(Registry ctx) { registry = ctx; canUpdate = true; EventBus bus = registry.getEventBus(); bus.register(this, ImageLoaded.class); bus.register(this, DisplayViewerRelatedAgent.class); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8a4d5e12d87798c81c0e8de88f3ca3fd97e8a6cc/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java
public boolean isAutoloadDefined(String id) {
public boolean isAutoloadDefined(String name) {
public boolean isAutoloadDefined(String id) { return false; }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe5b7835d80b52a0683d503660a7f722b7af69b1/Ruby.java/clean/org/jruby/Ruby.java