rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k |
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if (authors==null) authors = consortium; | if (authors==null) authors = consortium + " (consortium)"; | public boolean readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) throws IllegalSymbolException, IOException, ParseException { boolean hasAnotherSequence = true; //boolean hasInternalWhite... |
Agregator dotAgre = new Agregator( | MultiTagger dotMultiTag = new MultiTagger( | public ParserListener getParserListener(TagValueListener listener) { ChangeTable.Changer trailingDotStripper = new ChangeTable.Changer() { public Object change(Object value) { String val = (String) value; if(val.endsWith(".")) { return val.substring(0, val.length() - 1); } else {... |
new Agregator.Observer() { | new BoundaryFinder() { | public ParserListener getParserListener(TagValueListener listener) { ChangeTable.Changer trailingDotStripper = new ChangeTable.Changer() { public Object change(Object value) { String val = (String) value; if(val.endsWith(".")) { return val.substring(0, val.length() - 1); } else {... |
Agregator commentAgre = new Agregator( | MultiTagger commentMultiTag = new MultiTagger( | public ParserListener getParserListener(TagValueListener listener) { ChangeTable.Changer trailingDotStripper = new ChangeTable.Changer() { public Object change(Object value) { String val = (String) value; if(val.endsWith(".")) { return val.substring(0, val.length() - 1); } else {... |
tagDelegator.setListener("AN", dotAgre); tagDelegator.setListener("CA", dotAgre); tagDelegator.setListener("CC", commentAgre); | tagDelegator.setListener("AN", dotMultiTag); tagDelegator.setListener("CA", dotMultiTag); tagDelegator.setListener("CC", commentMultiTag); | public ParserListener getParserListener(TagValueListener listener) { ChangeTable.Changer trailingDotStripper = new ChangeTable.Changer() { public Object change(Object value) { String val = (String) value; if(val.endsWith(".")) { return val.substring(0, val.length() - 1); } else {... |
public static LastPostInfo getLastPostInfo(Forum forum) throws Exception | public static LastPostInfo getLastPostInfo(Forum forum) | public static LastPostInfo getLastPostInfo(Forum forum) throws Exception { LastPostInfo lpi = forum.getLastPostInfo(); if (lpi == null || !forum.getLastPostInfo().hasInfo()) { lpi = DataAccessDriver.getInstance().newForumDAO().getLastPostInfo(forum.getId()); forum.setLastPostInfo(lpi); } return lpi; } |
public static String getListAllowedForums() throws Exception | public static String getListAllowedForums() | public static String getListAllowedForums() throws Exception { int n = 0; StringBuffer buf = new StringBuffer(); List allCategories = ForumRepository.getAllCategories(); for (Iterator iter = allCategories.iterator(); iter.hasNext(); ) { Collection forums = ((Category)iter.next()).getForums(); for (Itera... |
public static int getTotalMessages() throws Exception | public static int getTotalMessages() | public static int getTotalMessages() throws Exception { return getTotalMessages(false); } |
private void loadCategories(CategoryDAO cm) throws Exception | private void loadCategories(CategoryDAO cm) | private void loadCategories(CategoryDAO cm) throws Exception { List categories = cm.selectAll(); Set categoriesSet = new TreeSet(new CategoryOrderComparator()); for (Iterator iter = categories.iterator(); iter.hasNext(); ) { Category c = (Category)iter.next(); cache.add(FQN, Integer.toString(c.getId()), c)... |
private void loadForums(ForumDAO fm) throws Exception | private void loadForums(ForumDAO fm) | private void loadForums(ForumDAO fm) throws Exception { List l = fm.selectAll(); Map m = (Map)cache.get(FQN, RELATION); if (m == null) { m = new HashMap(); } int lastId = 0; Category c = null; String catId = null; for (Iterator iter = l.iterator(); iter.hasNext(); ) { Forum f = (Forum)iter.next(); ... |
private void loadMostUsersEverOnline(ConfigDAO cm) throws Exception | private void loadMostUsersEverOnline(ConfigDAO cm) | private void loadMostUsersEverOnline(ConfigDAO cm) throws Exception { Config config = cm.selectByName(ConfigKeys.MOST_USERS_EVER_ONLINE); MostUsersEverOnline mostUsersEverOnline = new MostUsersEverOnline(); if (config != null) { mostUsersEverOnline.setTotal(Integer.parseInt(config.getValue())); // We're as... |
private void loadUsersInfo() throws Exception | private void loadUsersInfo() | private void loadUsersInfo() throws Exception { UserDAO udao = DataAccessDriver.getInstance().newUserDAO(); cache.add(FQN, LAST_USER, udao.getLastUserInfo()); cache.add(FQN, TOTAL_USERS, new Integer(udao.getTotalUsers())); } |
public static synchronized void reloadForum(int forumId) throws Exception | public static synchronized void reloadForum(int forumId) | public static synchronized void reloadForum(int forumId) throws Exception { Forum f = DataAccessDriver.getInstance().newForumDAO().selectById(forumId); if (((Map)cache.get(FQN, RELATION)).containsKey(Integer.toString(forumId))) { String id = Integer.toString(f.getCategoryId()); Category c = (Category)cache.get... |
public synchronized static void start(ForumDAO fm, CategoryDAO cm, ConfigDAO configModel) throws Exception | public synchronized static void start(ForumDAO fm, CategoryDAO cm, ConfigDAO configModel) | public synchronized static void start(ForumDAO fm, CategoryDAO cm, ConfigDAO configModel) throws Exception { instance = new ForumRepository(); if (cache.get(FQN, LOADED) == null) { instance.loadCategories(cm); instance.loadForums(fm); instance.loadMostUsersEverOnline(configModel); instance.loadUsersIn... |
public static void updateMostUsersEverOnline(MostUsersEverOnline m) throws Exception | public static void updateMostUsersEverOnline(MostUsersEverOnline m) | public static void updateMostUsersEverOnline(MostUsersEverOnline m) throws Exception { ConfigDAO cm = DataAccessDriver.getInstance().newConfigDAO(); Config config = cm.selectByName(ConfigKeys.MOST_USERS_EVER_ONLINE); if (config == null) { // Total config = new Config(); config.setName(ConfigKeys.MOST_USERS_EV... |
double bearing = Utils.normalRelativeAngle(angle - heading); | double bearing = normalRelativeAngle(angle - heading); | public void checkRobotCollision() { synchronized (this) { inCollision = false; } for (int i = 0; i < battle.getRobots().size(); i++) { RobotPeer r = (RobotPeer) battle.getRobots().elementAt(i); if (!(r == null || r == this || r.isDead) && boundingBox.intersects(r.boundingBox)) { // Bounce back double an... |
eventManager.add( new HitRobotEvent(r.getName(), Utils.normalRelativeAngle(angle - heading), r.energy, atFault)); | eventManager.add(new HitRobotEvent(r.getName(), normalRelativeAngle(angle - heading), r.energy, atFault)); | public void checkRobotCollision() { synchronized (this) { inCollision = false; } for (int i = 0; i < battle.getRobots().size(); i++) { RobotPeer r = (RobotPeer) battle.getRobots().elementAt(i); if (!(r == null || r == this || r.isDead) && boundingBox.intersects(r.boundingBox)) { // Bounce back double an... |
new HitRobotEvent(getName(), Utils.normalRelativeAngle(PI + angle - r.heading), energy, false)); | new HitRobotEvent(getName(), normalRelativeAngle(PI + angle - r.heading), energy, false)); | public void checkRobotCollision() { synchronized (this) { inCollision = false; } for (int i = 0; i < battle.getRobots().size(); i++) { RobotPeer r = (RobotPeer) battle.getRobots().elementAt(i); if (!(r == null || r == this || r.isDead) && boundingBox.intersects(r.boundingBox)) { // Bounce back double an... |
angle = Utils.normalRelativeAngle(PI / 2 - heading); | angle = normalRelativeAngle(PI / 2 - heading); | public void checkWallCollision() { boolean hitWall = false; double fixx = 0; double fixy = 0; double angle = 0; if (boundingBox.x + boundingBox.width > battleField.getBoundingBox().x + battleField.getBoundingBox().width) { hitWall = true; fixx = battleField.getBoundingBox().x + battleField.getBoundingBox().wi... |
angle = Utils.normalRelativeAngle(3 * PI / 2 - heading); | angle = normalRelativeAngle(3 * PI / 2 - heading); | public void checkWallCollision() { boolean hitWall = false; double fixx = 0; double fixy = 0; double angle = 0; if (boundingBox.x + boundingBox.width > battleField.getBoundingBox().x + battleField.getBoundingBox().width) { hitWall = true; fixx = battleField.getBoundingBox().x + battleField.getBoundingBox().wi... |
angle = Utils.normalRelativeAngle(-heading); | angle = normalRelativeAngle(-heading); | public void checkWallCollision() { boolean hitWall = false; double fixx = 0; double fixy = 0; double angle = 0; if (boundingBox.x + boundingBox.width > battleField.getBoundingBox().x + battleField.getBoundingBox().width) { hitWall = true; fixx = battleField.getBoundingBox().x + battleField.getBoundingBox().wi... |
angle = Utils.normalRelativeAngle(PI - heading); | angle = normalRelativeAngle(PI - heading); | public void checkWallCollision() { boolean hitWall = false; double fixx = 0; double fixy = 0; double angle = 0; if (boundingBox.x + boundingBox.width > battleField.getBoundingBox().x + battleField.getBoundingBox().width) { hitWall = true; fixx = battleField.getBoundingBox().x + battleField.getBoundingBox().wi... |
Utils.log("testing: " + x1 + "," + y1); | log("testing: " + x1 + "," + y1); | public boolean intersectsLine(Rectangle2D.Float r, double x1, double y1, double x2, double y2) { int out1, out2; if ((out2 = r.outcode(x2, y2)) == 0) { return true; } while ((out1 = r.outcode(x1, y1)) != 0) { Utils.log("testing: " + x1 + "," + y1); if ((out1 & out2) != 0) { return false; } if ((out1 &... |
Utils.log("adding r.getWidth"); | log("adding r.getWidth"); | public boolean intersectsLine(Rectangle2D.Float r, double x1, double y1, double x2, double y2) { int out1, out2; if ((out2 = r.outcode(x2, y2)) == 0) { return true; } while ((out1 = r.outcode(x1, y1)) != 0) { Utils.log("testing: " + x1 + "," + y1); if ((out1 & out2) != 0) { return false; } if ((out1 &... |
Utils.log("x is now: " + x); | log("x is now: " + x); | public boolean intersectsLine(Rectangle2D.Float r, double x1, double y1, double x2, double y2) { int out1, out2; if ((out2 = r.outcode(x2, y2)) == 0) { return true; } while ((out1 = r.outcode(x1, y1)) != 0) { Utils.log("testing: " + x1 + "," + y1); if ((out1 & out2) != 0) { return false; } if ((out1 &... |
Utils.log("x1 is now: " + x1); | log("x1 is now: " + x1); | public boolean intersectsLine(Rectangle2D.Float r, double x1, double y1, double x2, double y2) { int out1, out2; if ((out2 = r.outcode(x2, y2)) == 0) { return true; } while ((out1 = r.outcode(x1, y1)) != 0) { Utils.log("testing: " + x1 + "," + y1); if ((out1 & out2) != 0) { return false; } if ((out1 &... |
Utils.log("adding r.getHeight"); | log("adding r.getHeight"); | public boolean intersectsLine(Rectangle2D.Float r, double x1, double y1, double x2, double y2) { int out1, out2; if ((out2 = r.outcode(x2, y2)) == 0) { return true; } while ((out1 = r.outcode(x1, y1)) != 0) { Utils.log("testing: " + x1 + "," + y1); if ((out1 & out2) != 0) { return false; } if ((out1 &... |
Utils.log(getName() + " stopped successfully."); | log(getName() + " stopped successfully."); | public void run() { setRunning(true); try { if (robot != null) { robot.run(); } for (;;) { tick(); } } catch (DeathException e) { out.println("SYSTEM: " + getName() + " has died"); } catch (WinException e) { ; // Do nothing } catch (DisabledException e) { setEnergy(0); String msg = e.getMess... |
if (getTestingCondition()) { | if (testingCondition) { | public final void tick() { if (newBullet != null) { battle.addBullet(newBullet); newBullet = null; } // Entering tick if (Thread.currentThread() != robotThreadManager.getRunThread()) { throw new RobotException("You cannot take action in this thread!"); } if (getTestingCondition()) { throw new RobotExcept... |
this.wait(10000); | this.wait(); | public final void tick() { if (newBullet != null) { battle.addBullet(newBullet); newBullet = null; } // Entering tick if (Thread.currentThread() != robotThreadManager.getRunThread()) { throw new RobotException("You cannot take action in this thread!"); } if (getTestingCondition()) { throw new RobotExcept... |
Utils.log("Wait interrupted"); | log("Wait interrupted"); | public final void tick() { if (newBullet != null) { battle.addBullet(newBullet); newBullet = null; } // Entering tick if (Thread.currentThread() != robotThreadManager.getRunThread()) { throw new RobotException("You cannot take action in this thread!"); } if (getTestingCondition()) { throw new RobotExcept... |
gunHeading = Utils.normalAbsoluteAngle(gunHeading); | gunHeading = normalAbsoluteAngle(gunHeading); | private void updateGunHeading() { if (gunTurnRemaining > 0) { if (gunTurnRemaining < Rules.GUN_TURN_RATE_RADIANS) { gunHeading += gunTurnRemaining; radarHeading += gunTurnRemaining; if (isAdjustRadarForGunTurn) { radarTurnRemaining -= gunTurnRemaining; } gunTurnRemaining = 0; } else { gunHea... |
heading = Utils.normalNearAbsoluteAngle(heading); | heading = normalNearAbsoluteAngle(heading); | private void updateHeading() { boolean normalizeHeading = true; double turnRate = min(maxTurnRate, (0.4 + 0.6 * (1 - (abs(velocity) / Rules.MAX_VELOCITY))) * Rules.MAX_TURN_RATE_RADIANS); if (turnRemaining > 0) { if (turnRemaining < turnRate) { heading += turnRemaining; gunHeading += turnRemaining; r... |
heading = Utils.normalAbsoluteAngle(heading); | heading = normalAbsoluteAngle(heading); | private void updateHeading() { boolean normalizeHeading = true; double turnRate = min(maxTurnRate, (0.4 + 0.6 * (1 - (abs(velocity) / Rules.MAX_VELOCITY))) * Rules.MAX_TURN_RATE_RADIANS); if (turnRemaining > 0) { if (turnRemaining < turnRate) { heading += turnRemaining; gunHeading += turnRemaining; r... |
radarHeading = Utils.normalAbsoluteAngle(radarHeading); | radarHeading = normalAbsoluteAngle(radarHeading); | private void updateRadarHeading() { if (radarTurnRemaining > 0) { if (radarTurnRemaining < Rules.RADAR_TURN_RATE_RADIANS) { radarHeading += radarTurnRemaining; radarTurnRemaining = 0; } else { radarHeading += Rules.RADAR_TURN_RATE_RADIANS; radarTurnRemaining -= Rules.RADAR_TURN_RATE_RADIANS; } } el... |
public void bbReload() throws Exception | public void bbReload() | public void bbReload() throws Exception { BBCodeRepository.setBBCollection(new BBCodeHandler().parse()); this.list(); } |
public void list() throws Exception | public void list() | public void list() throws Exception { this.setTemplateName(TemplateKeys.CACHE_LIST); this.context.put("bb", new BBCodeRepository()); this.context.put("modules", new ModulesRepository()); this.context.put("ranking", new RankingRepository()); this.context.put("smilies", new SmiliesRepository()); this.context.put... |
public void modulesReload() throws Exception | public void modulesReload() | public void modulesReload() throws Exception { ModulesRepository.init(SystemGlobals.getValue(ConfigKeys.CONFIG_DIR)); this.list(); } |
public void postsClear() throws Exception | public void postsClear() | public void postsClear() throws Exception { int topicId = this.request.getIntParameter("topic_id"); PostRepository.clearCache(topicId); this.postsMoreInfo(); } |
public void postsMoreInfo() throws Exception | public void postsMoreInfo() | public void postsMoreInfo() throws Exception { if (!SystemGlobals.getBoolValue(ConfigKeys.POSTS_CACHE_ENABLED)) { this.list(); return; } Collection topics = PostRepository.cachedTopics(); this.context.put("topics", DataAccessDriver.getInstance().newTopicDAO().selectTopicTitlesByIds(topics)); this.context.... |
public void rankingReload() throws Exception | public void rankingReload() | public void rankingReload() throws Exception { RankingRepository.loadRanks(); this.list(); } |
public void sessionClear() throws Exception | public void sessionClear() | public void sessionClear() throws Exception { SessionFacade.clear(); this.list(); } |
public void smiliesReload() throws Exception | public void smiliesReload() | public void smiliesReload() throws Exception { SmiliesRepository.loadSmilies(); this.list(); } |
public void topicsClear() throws Exception | public void topicsClear() | public void topicsClear() throws Exception { int forumId = this.request.getIntParameter("forum_id"); TopicRepository.clearCache(forumId); this.topicsMoreInfo(); } |
public void topicsMoreInfo() throws Exception | public void topicsMoreInfo() | public void topicsMoreInfo() throws Exception { if (!SystemGlobals.getBoolValue(ConfigKeys.TOPIC_CACHE_ENABLED)) { this.list(); return; } this.setTemplateName(TemplateKeys.CACHE_TOPICS_MOREINFO); this.context.put("categories", ForumRepository.getAllCategories()); } |
public static void init(String baseDir) throws IOException | public static void init(String baseDir) | public static void init(String baseDir) throws IOException { cache.put(ENTRIES, ConfigLoader.loadModulesMapping(baseDir)); } |
this.context.put("smilies", SmiliesRepository.getSmilies()); | private void sendFormCommon(User user) { this.setTemplateName(TemplateKeys.PM_SENDFORM); this.context.put("user", user); this.context.put("moduleName", "pm"); this.context.put("action", "sendSave"); this.context.put("htmlAllowed", true); this.context.put("attachmentsEnabled", false); this.context.put("maxAtta... | |
if ( out != null ) { IoUtils.close( out ); } | IoUtils.close( out ); | public void get( String resourceName, File destination ) throws TransferFailedException, ResourceDoesNotExistException, AuthorizationException { Resource resource = new Resource( resourceName ); fireGetInitiated( resource, destination ); ChannelExec channel = null; //I/O stream... |
throws TransferFailedException | throws TransferFailedException, ResourceDoesNotExistException | protected void handleGetException( Resource resource, Exception e, File destination ) throws TransferFailedException { fireTransferError( resource, e, TransferEvent.REQUEST_GET ); if ( destination.exists() ) { boolean deleted = destination.delete(); if ( !deleted... |
throw new TransferFailedException( msg, e ); | if( e.toString().equals("No such file")) { throw new ResourceDoesNotExistException( msg, e ); } else { throw new TransferFailedException( msg, e ); } | protected void handleGetException( Resource resource, Exception e, File destination ) throws TransferFailedException { fireTransferError( resource, e, TransferEvent.REQUEST_GET ); if ( destination.exists() ) { boolean deleted = destination.delete(); if ( !deleted... |
setFault(e); | recordFault(e); | public void execute() { assertNotCompleted(); try { getProvider().registerDestination(getName()); } catch (RuntimeException e) { setFault(e); } completed(); } |
public String getDate(int dateType) { | public String getDate( final int dateType ) { | public String getDate(int dateType) { String dateTime; if (dateType == DIGITIZED_DATE) { dateTime = getString(ExifConstants.DIGITIZED_DATE); } else if (dateType == MODIFIED_DATE) { dateTime = getString(ExifConstants.MODIFIED_DATE); } else { dateTime = get... |
if (dateParts.size() != 6) | if (dateParts.size() != 6) { | public String getDate(int dateType) { String dateTime; if (dateType == DIGITIZED_DATE) { dateTime = getString(ExifConstants.DIGITIZED_DATE); } else if (dateType == MODIFIED_DATE) { dateTime = getString(ExifConstants.MODIFIED_DATE); } else { dateTime = get... |
} | public String getDate(int dateType) { String dateTime; if (dateType == DIGITIZED_DATE) { dateTime = getString(ExifConstants.DIGITIZED_DATE); } else if (dateType == MODIFIED_DATE) { dateTime = getString(ExifConstants.MODIFIED_DATE); } else { dateTime = get... | |
int programNumber = getInt(ExifConstants.EXPOSURE_PROGRAM); | final int programNumber = getInt(ExifConstants.EXPOSURE_PROGRAM); | public String getExposureProgram() { int programNumber = getInt(ExifConstants.EXPOSURE_PROGRAM); switch (programNumber) { case 1: return "Manual Mode"; case 2: return "Automatic Mode"; case 3: return "Aperture Priority"; ... |
Rational rat = (Rational) getObject(ExifConstants.F_NUMBER); if (rat == null) | final Rational rat = (Rational) getObject(ExifConstants.F_NUMBER); if (rat == null) { | public String getFStop() { Rational rat = (Rational) getObject(ExifConstants.F_NUMBER); if (rat == null) return ""; return "" + rat.getDoubleValue(); } |
} | public String getFStop() { Rational rat = (Rational) getObject(ExifConstants.F_NUMBER); if (rat == null) return ""; return "" + rat.getDoubleValue(); } | |
int flash = getInt(ExifConstants.FLASH); | final int flash = getInt(ExifConstants.FLASH); | public String getFlash() { int flash = getInt(ExifConstants.FLASH); switch (flash) { case 0: return "No Flash"; case 5: return "Camera Flash"; case 6: return "Camera Flash, no Strobe Bounce Detected"; case 7: ... |
Rational rat = (Rational) getObject(ExifConstants.SHUTTER_SPEED); if (rat == null) | final Rational rat = (Rational) getObject(ExifConstants.SHUTTER_SPEED); if (rat == null) { | public String getShutterSpeed() { Rational rat = (Rational) getObject(ExifConstants.SHUTTER_SPEED); if (rat == null) return ""; return rat.getFraction(); } |
} | public String getShutterSpeed() { Rational rat = (Rational) getObject(ExifConstants.SHUTTER_SPEED); if (rat == null) return ""; return rat.getFraction(); } | |
public ABibtex( List _stringEntry_, List _entry_) | public ABibtex() | public ABibtex( List _stringEntry_, List _entry_) { { this._stringEntry_.clear(); this._stringEntry_.addAll(_stringEntry_); } { this._entry_.clear(); this._entry_.addAll(_entry_); } } |
{ this._stringEntry_.clear(); this._stringEntry_.addAll(_stringEntry_); } { this._entry_.clear(); this._entry_.addAll(_entry_); } | public ABibtex( List _stringEntry_, List _entry_) { { this._stringEntry_.clear(); this._stringEntry_.addAll(_stringEntry_); } { this._entry_.clear(); this._entry_.addAll(_entry_); } } | |
System.out.println("Copyright (C) 2003-2005 A. Vontobel"); | System.out.println("Copyright (C) 2003-2006 A. Vontobel"); | public static void main(String[] args) { String sprache; String land; String dateiname = ""; String lookAndFeel = "Steel"; Locale lc = Locale.getDefault(); treillis fw; boolean help = false; String titel = "" + PROGNAME + " version " + HAUPTVER + "."; ... |
else searchStatus = NODATA; | public void parseSearch(final BufferedReader reader, final SearchContentHandler handler) throws IOException, BioException, ParserException { lineNumber = 0; boolean parsedQueryId = false; this.handler = handler; LINE: while ((line = reader.readLine()) != null) { lin... | |
searchParsed = true; handler.setMoreSearches(true); return; | searchParsed = true; searchStatus = NODATA; continue LINE; | public void parseSearch(final BufferedReader reader, final SearchContentHandler handler) throws IOException, BioException, ParserException { lineNumber = 0; boolean parsedQueryId = false; this.handler = handler; LINE: while ((line = reader.readLine()) != null) { lin... |
break STATUS; } else | else break STATUS; } else | public void parseSearch(final BufferedReader reader, final SearchContentHandler handler) throws IOException, BioException, ParserException { lineNumber = 0; boolean parsedQueryId = false; this.handler = handler; LINE: while ((line = reader.readLine()) != null) { lin... |
parsedQueryId = true; } | public void parseSearch(final BufferedReader reader, final SearchContentHandler handler) throws IOException, BioException, ParserException { lineNumber = 0; boolean parsedQueryId = false; this.handler = handler; LINE: while ((line = reader.readLine()) != null) { lin... | |
public void show(ImagePlus imp, String[] labels, int[] axes, int countZ, int countT, int countC, int indexZ, int indexT, int indexC) { names = labels; lengths = axes; numZ = countZ; numT = countT; numC = countC; hasZ = numZ > 1; hasT = numT > 1; hasC = numC > 1; zIndex = indexZ; tIndex = indexT; cIndex = indexC; show(i... | public void show(ImagePlus imp) { int stackSize = imp == null ? 0 : imp.getStackSize(); if (stackSize == 0) { msg("Cannot show invalid image."); return; } if (stackSize == 1) { imp.show(); return; } new CustomWindow(this, imp, new ImageCanvas(imp)); | public void show(ImagePlus imp, String[] labels, int[] axes, int countZ, int countT, int countC, int indexZ, int indexT, int indexC) { names = labels; lengths = axes; numZ = countZ; numT = countT; numC = countC; hasZ = numZ > 1; hasT = numT > 1; hasC = numC > 1; zIndex = indexZ; tInd... |
return new FeatureFilter.OverlapsLocation(transformLocation(((FeatureFilter.OverlapsLocation) ff).getLocation())); | return new FeatureFilter.OverlapsLocation(untransformLocation(((FeatureFilter.OverlapsLocation) ff).getLocation())); | private FeatureFilter _transformFilter(FeatureFilter ff) { if (ff instanceof FeatureFilter.And) { FeatureFilter ff1 = ((FeatureFilter.And) ff).getChild1(); FeatureFilter ff2 = ((FeatureFilter.And) ff).getChild2(); return new FeatureFilter.And(transformFilter(ff1), transformFi... |
return new FeatureFilter.ContainedByLocation(transformLocation(((FeatureFilter.ContainedByLocation) ff).getLocation())); | return new FeatureFilter.ContainedByLocation(untransformLocation(((FeatureFilter.ContainedByLocation) ff).getLocation())); | private FeatureFilter _transformFilter(FeatureFilter ff) { if (ff instanceof FeatureFilter.And) { FeatureFilter ff1 = ((FeatureFilter.And) ff).getChild1(); FeatureFilter ff2 = ((FeatureFilter.And) ff).getChild2(); return new FeatureFilter.And(transformFilter(ff1), transformFi... |
this.addMouseListener(mouseListener); this.addMouseMotionListener(mouseMotionListener); | public SequencePanel() { super(); if(getFont() == null) { setFont(new Font("Times New Roman", Font.PLAIN, 12)); } this.addPropertyChangeListener(theMonitor); } | |
System.out.println("minPos: " + minPos); | public void paintComponent(Graphics g) { if( (sequence == null) || (renderer == null) ) { return; } Graphics2D g2 = (Graphics2D) g; Rectangle2D currentClip = g2.getClip().getBounds2D(); double minPos; double maxPos; if(direction == HORIZONTAL) { minPos = currentClip.getMinY(); ... | |
System.out.println("minOffset: " + minOffset); | public void paintComponent(Graphics g) { if( (sequence == null) || (renderer == null) ) { return; } Graphics2D g2 = (Graphics2D) g; Rectangle2D currentClip = g2.getClip().getBounds2D(); double minPos; double maxPos; if(direction == HORIZONTAL) { minPos = currentClip.getMinY(); ... | |
System.out.println("minCoord: " + minCoord); | public void paintComponent(Graphics g) { if( (sequence == null) || (renderer == null) ) { return; } Graphics2D g2 = (Graphics2D) g; Rectangle2D currentClip = g2.getClip().getBounds2D(); double minPos; double maxPos; if(direction == HORIZONTAL) { minPos = currentClip.getMinY(); ... | |
System.out.println("minP: " + minP); | public void paintComponent(Graphics g) { if( (sequence == null) || (renderer == null) ) { return; } Graphics2D g2 = (Graphics2D) g; Rectangle2D currentClip = g2.getClip().getBounds2D(); double minPos; double maxPos; if(direction == HORIZONTAL) { minPos = currentClip.getMinY(); ... | |
System.out.println("resizeAndValidate starting"); | public void resizeAndValidate() { System.out.println("resizeAndValidate starting"); Dimension d = null; double acrossDim; if( (sequence == null) || (renderer == null) ) { System.out.println("No sequence"); // no sequence - collapse down to no size at all alongDim = 0.0; acrossDim =... | |
System.out.println("insetBefore: " + insetBefore); System.out.println("insetAfter: " + insetAfter); | public void resizeAndValidate() { System.out.println("resizeAndValidate starting"); Dimension d = null; double acrossDim; if( (sequence == null) || (renderer == null) ) { System.out.println("No sequence"); // no sequence - collapse down to no size at all alongDim = 0.0; acrossDim =... | |
System.out.println("resizeAndValidate ending"); | public void resizeAndValidate() { System.out.println("resizeAndValidate starting"); Dimension d = null; double acrossDim; if( (sequence == null) || (renderer == null) ) { System.out.println("No sequence"); // no sequence - collapse down to no size at all alongDim = 0.0; acrossDim =... | |
if( (this.renderer != null) && (this.renderer instanceof Changeable) ) { Changeable c = (Changeable) this.renderer; c.removeChangeListener(layoutListener, SequenceRenderContext.LAYOUT); c.removeChangeListener(repaintListener, SequenceRenderContext.REPAINT); } this.renderer = r; if( (r != null) && (r instanceof Changeab... | cs.firePreChangeEvent(ce); _setRenderer(r); cs.firePostChangeEvent(ce); | public void setRenderer(SequenceRenderer r) throws ChangeVetoException { if(hasChangeListeners()) { ChangeEvent ce = new ChangeEvent( this, RENDERER, r, this.renderer ); ChangeSupport cs = getChangeSupport(RENDERER); synchronized(cs) { if( (this.renderer != n... |
this.renderer = r; | _setRenderer(r); | public void setRenderer(SequenceRenderer r) throws ChangeVetoException { if(hasChangeListeners()) { ChangeEvent ce = new ChangeEvent( this, RENDERER, r, this.renderer ); ChangeSupport cs = getChangeSupport(RENDERER); synchronized(cs) { if( (this.renderer != n... |
String rel = dm.group(2); String type = dm.group(3); | String rel = dm.group(4); String type = dm.group(5); | public boolean readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) throws IllegalSymbolException, IOException, ParseException { String line; boolean hasAnotherSequence = true; //bool... |
} else if (e.getSource() == RobocodeFrame.this.getNextTurnButton()) { nextTurnButtonActionPerformed(); | public void actionPerformed(ActionEvent e) { if (e.getSource() == RobocodeFrame.this.getPauseResumeButton()) { pauseResumeButtonActionPerformed(); } else if (e.getSource() == RobocodeFrame.this.getStopButton()) { stopButtonActionPerformed(); } else if (e.getSource() == RobocodeFrame.this.getRestartButton(... | |
pauseResumeButton = new JButton("Pause"); | pauseResumeButton = new JButton("Pause/Debug"); | public JButton getPauseResumeButton() { if (pauseResumeButton == null) { pauseResumeButton = new JButton("Pause"); pauseResumeButton.setMnemonic('P'); pauseResumeButton.setDisplayedMnemonicIndex(0); pauseResumeButton.setHorizontalTextPosition(SwingConstants.CENTER); pauseResumeButton.setVerticalTextPosition... |
toolBar.add(getNextTurnButton()); | private JToolBar getToolBar() { if (toolBar == null) { toolBar = new JToolBar(); toolBar.add(getPauseResumeButton()); toolBar.add(getStopButton()); toolBar.add(getRestartButton()); toolBar.add(new JLabel(" ")); toolBar.add(getStatusLabel()); Utils.setDefaultStatusLabel(getStatusLabel()); } return tool... | |
if (getPauseResumeButton().getText().equals("Pause")) { | if (getPauseResumeButton().getText().equals("Pause/Debug")) { | public void pauseResumeButtonActionPerformed() { if (getPauseResumeButton().getText().equals("Pause")) { getPauseResumeButton().setText("Resume"); getPauseResumeButton().setMnemonic('e'); getPauseResumeButton().setDisplayedMnemonicIndex(1); manager.getBattleManager().pauseBattle(); } else if (getPauseResumeB... |
getPauseResumeButton().setText("Pause"); | getPauseResumeButton().setText("Pause/Debug"); | public void pauseResumeButtonActionPerformed() { if (getPauseResumeButton().getText().equals("Pause")) { getPauseResumeButton().setText("Resume"); getPauseResumeButton().setMnemonic('e'); getPauseResumeButton().setDisplayedMnemonicIndex(1); manager.getBattleManager().pauseBattle(); } else if (getPauseResumeB... |
getNextTurnButton().setVisible(false); | public void pauseResumeButtonActionPerformed() { if (getPauseResumeButton().getText().equals("Pause")) { getPauseResumeButton().setText("Resume"); getPauseResumeButton().setMnemonic('e'); getPauseResumeButton().setDisplayedMnemonicIndex(1); manager.getBattleManager().pauseBattle(); } else if (getPauseResumeB... | |
public void restartButtonActionPerformed() { | private void restartButtonActionPerformed() { | public void restartButtonActionPerformed() { windowManager.getManager().getBattleManager().restart(); } |
public void stopButtonActionPerformed() { | private void stopButtonActionPerformed() { | public void stopButtonActionPerformed() { windowManager.getManager().getBattleManager().stop(true); } |
public void addNew(Group group) throws Exception | public void addNew(Group group) | public void addNew(Group group) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.addNew")); p.setString(1, group.getName()); p.setString(2, group.getDescription()); p.setInt(3, group.getParentId()); p.executeUpdate(); p.close(); ... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.addNew")); p.setString(1, group.getName()); p.setString(2, group.getDescription()); p.setInt(3, group.getParentId()); p.executeUpdate(); p.close(); | PreparedStatement p=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.addNew")); p.setString(1, group.getName()); p.setString(2, group.getDescription()); p.setInt(3, group.getParentId()); p.executeUpdate(); } catch (SQLException e) { String es = "Erorr selectActiv... | public void addNew(Group group) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.addNew")); p.setString(1, group.getName()); p.setString(2, group.getDescription()); p.setInt(3, group.getParentId()); p.executeUpdate(); p.close(); ... |
public boolean canDelete(int groupId) throws Exception | public boolean canDelete(int groupId) | public boolean canDelete(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.canDelete")); p.setInt(1, groupId); boolean status = false; ResultSet rs = p.executeQuery(); if (!rs.next() || rs.getInt("total") < 1) { sta... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.canDelete")); p.setInt(1, groupId); boolean status = false; ResultSet rs = p.executeQuery(); if (!rs.next() || rs.getInt("total") < 1) { status = true; } rs.close(); p.close(); return status; } | PreparedStatement p=null; ResultSet rs=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.canDelete")); p.setInt(1, groupId); boolean status = false; rs = p.executeQuery(); if (!rs.next() || rs.getInt("total") < 1) { status = true; } return status; } catch (SQLEx... | public boolean canDelete(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.canDelete")); p.setInt(1, groupId); boolean status = false; ResultSet rs = p.executeQuery(); if (!rs.next() || rs.getInt("total") < 1) { sta... |
public void delete(int groupId) throws Exception | public void delete(int groupId) | public void delete(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.delete")); p.setInt(1, groupId); p.executeUpdate(); p.close(); } |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.delete")); p.setInt(1, groupId); p.executeUpdate(); p.close(); | PreparedStatement p=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.delete")); p.setInt(1, groupId); p.executeUpdate(); } catch (SQLException e) { String es = "Erorr delete()"; log.error(es, e); throw new RuntimeException(es, e); } finally { DbUtils.close( p); } | public void delete(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.delete")); p.setInt(1, groupId); p.executeUpdate(); p.close(); } |
protected List fillGroups(ResultSet rs) throws Exception | protected List fillGroups(ResultSet rs) throws SQLException | protected List fillGroups(ResultSet rs) throws Exception { List l = new ArrayList(); while (rs.next()) { l.add(this.getGroup(rs)); } return l; } |
protected Group getGroup(ResultSet rs) throws Exception | protected Group getGroup(ResultSet rs) throws SQLException | protected Group getGroup(ResultSet rs) throws Exception { Group g = new Group(); g.setId(rs.getInt("group_id")); g.setDescription(rs.getString("group_description")); g.setName(rs.getString("group_name")); g.setParentId(rs.getInt("parent_id")); return g; } |
public List selectAll() throws Exception | public List selectAll() | public List selectAll() throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectAll")); ResultSet rs = p.executeQuery(); List l = this.fillGroups(rs); rs.close(); p.close(); return l; } |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectAll")); ResultSet rs = p.executeQuery(); List l = this.fillGroups(rs); rs.close(); p.close(); return l; } | PreparedStatement p=null; ResultSet rs=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectAll")); rs = p.executeQuery(); return this.fillGroups(rs); } catch (SQLException e) { String es = "Erorr selectAll()"; log.error(es, e); throw new RuntimeException(es, e... | public List selectAll() throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectAll")); ResultSet rs = p.executeQuery(); List l = this.fillGroups(rs); rs.close(); p.close(); return l; } |
public Group selectById(int groupId) throws Exception | public Group selectById(int groupId) | public Group selectById(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectById")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); Group g = new Group(); if (rs.next()) { g = this.getGroup(rs); } ... |
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