rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k |
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PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectById")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); Group g = new Group(); if (rs.next()) { g = this.getGroup(rs); } rs.close(); p.close(); | PreparedStatement p=null; ResultSet rs=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectById")); p.setInt(1, groupId); | public Group selectById(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectById")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); Group g = new Group(); if (rs.next()) { g = this.getGroup(rs); } ... |
return g; } | rs = p.executeQuery(); Group g = new Group(); if (rs.next()) { g = this.getGroup(rs); } return g; } catch (SQLException e) { String es = "Erorr selectById()"; log.error(es, e); throw new RuntimeException(es, e); } finally { DbUtils.close(rs, p); } } | public Group selectById(int groupId) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectById")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); Group g = new Group(); if (rs.next()) { g = this.getGroup(rs); } ... |
public List selectUsersIds(int groupId) throws Exception | public List selectUsersIds(int groupId) | public List selectUsersIds(int groupId) throws Exception { ArrayList l = new ArrayList(); PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectUsersIds")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); while (rs.next()) { l.add(new In... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectUsersIds")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); while (rs.next()) { l.add(new Integer(rs.getInt("user_id"))); } rs.close(); p.close(); | PreparedStatement p=null; ResultSet rs=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectUsersIds")); p.setInt(1, groupId); | public List selectUsersIds(int groupId) throws Exception { ArrayList l = new ArrayList(); PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectUsersIds")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); while (rs.next()) { l.add(new In... |
return l; } | rs = p.executeQuery(); while (rs.next()) { l.add(new Integer(rs.getInt("user_id"))); } return l; } catch (SQLException e) { String es = "Erorr selectUsersIds()"; log.error(es, e); throw new RuntimeException(es, e); } finally { DbUtils.close(rs, p); } } | public List selectUsersIds(int groupId) throws Exception { ArrayList l = new ArrayList(); PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.selectUsersIds")); p.setInt(1, groupId); ResultSet rs = p.executeQuery(); while (rs.next()) { l.add(new In... |
public void update(Group group) throws Exception | public void update(Group group) | public void update(Group group) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.update")); p.setString(1, group.getName()); p.setInt(2, group.getParentId()); p.setString(3, group.getDescription()); p.setInt(4, group.getId()); p.... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.update")); p.setString(1, group.getName()); p.setInt(2, group.getParentId()); p.setString(3, group.getDescription()); p.setInt(4, group.getId()); p.executeUpdate(); p.close(); } | PreparedStatement p=null; try { p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.update")); p.setString(1, group.getName()); p.setInt(2, group.getParentId()); p.setString(3, group.getDescription()); p.setInt(4, group.getId()); p.executeUpdate(); } catch (SQLException e) { St... | public void update(Group group) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement(SystemGlobals.getSql("GroupModel.update")); p.setString(1, group.getName()); p.setInt(2, group.getParentId()); p.setString(3, group.getDescription()); p.setInt(4, group.getId()); p.... |
public void addNew(Group group) throws Exception; | public void addNew(Group group) ; | public void addNew(Group group) throws Exception; |
public boolean canDelete(int groupId) throws Exception; | public boolean canDelete(int groupId) ; | public boolean canDelete(int groupId) throws Exception; |
public void delete(int groupId) throws Exception; | public void delete(int groupId) ; | public void delete(int groupId) throws Exception; |
public Group selectById(int groupId) throws Exception; | public Group selectById(int groupId) ; | public Group selectById(int groupId) throws Exception; |
public List selectUsersIds(int groupId) throws Exception; | public List selectUsersIds(int groupId) ; | public List selectUsersIds(int groupId) throws Exception; |
public void update(Group group) throws Exception; | public void update(Group group) ; | public void update(Group group) throws Exception; |
ResidueParser rParser = alpha.getParser("symbol"); | SymbolParser rParser = alpha.getParser("token"); | private static SequenceDB loadSequences(File seqFile) throws Exception { HashSequenceDB seqDB = new HashSequenceDB(HashSequenceDB.byName); Alphabet alpha = AlphabetManager.instance().alphabetForName("DNA"); ResidueParser rParser = alpha.getParser("symbol"); SequenceFactory sFact = new SimpleSequenceFacto... |
} catch (SeqException se) { | } catch (BioException se) { | private static SequenceDB loadSequences(File seqFile) throws Exception { HashSequenceDB seqDB = new HashSequenceDB(HashSequenceDB.byName); Alphabet alpha = AlphabetManager.instance().alphabetForName("DNA"); ResidueParser rParser = alpha.getParser("symbol"); SequenceFactory sFact = new SimpleSequenceFacto... |
MailingListData data = this.nobody.getListMgr().getMailingList(ml.getId()); | MailingListData data = this.nobody.getListMgr().getMySubscription(ml.getId()).getList(); | public void testCreateMailingListForExistingPerson() throws Exception { MailingListMixin ml = new MailingListMixin(this.admin, this.pers.getAddress()); // Should contain a "Your new list" email assertEquals(1, this.smtp.size()); assertEquals(1, this.smtp.count(MailType.NEW_MAILING_LIST)); MailingListData data =... |
MailingListData data = this.nobody.getListMgr().getMailingList(ml.getId()); | MailingListData data = this.nobody.getListMgr().getMySubscription(ml.getId()).getList(); | public void testCreateMailingListForNewPerson() throws Exception { PersonInfoMixin info = new PersonInfoMixin(); MailingListMixin ml = new MailingListMixin(this.admin, info.getAddress()); // Should contain a "Your new list" email assertEquals(1, this.smtp.size()); assertEquals(1, this.smtp.count(MailType.NEW_MAIL... |
protected void loadConfigStuff() throws Exception | protected void loadConfigStuff() | protected void loadConfigStuff() throws Exception { ConfigLoader.loadUrlPatterns(); I18n.load(); Tpl.load(SystemGlobals.getValue(ConfigKeys.TEMPLATES_MAPPING)); // BB Code BBCodeRepository.setBBCollection(new BBCodeHandler().parse()); } |
optionsViewGround = Boolean.valueOf(props.getProperty(OPTIONS_VIEW_GROUND, "true")).booleanValue(); | public void load(FileInputStream in) throws IOException { props.load(in); optionsViewRobotNames = Boolean.valueOf(props.getProperty(OPTIONS_VIEW_ROBOTNAMES, "true")).booleanValue(); optionsViewScanArcs = Boolean.valueOf(props.getProperty(OPTIONS_VIEW_SCANARCS, "false")).booleanValue(); optionsViewRobotEnergy = Boo... | |
while (offset < length && SchemeScannerUtilities.isIdentifierPartChar(document.getChar(offset))) offset++; | public static IRegion findSymbolRegionAroundPoint(IDocument document, int offset) throws BadLocationException { int length = document.getLength(); while (offset > 0 && Character.isWhitespace(document.getChar(offset - 1))) offset--; int start = offset; while (start > 0 && Schem... | |
LocalVariableInfo localVar = (LocalVariableInfo)container; if(localVar.getStart() == this){ if(localVar.getStart() == localVar.getEnd()){ localVar.setStart(null); localVar.setEnd(null); this.removeAccessor(localVar); this.removeAccessor(localVar); }else{ localVar.setStart(target); this.removeAccessor(localVar); targe... | LocalVariableInfo localVar = (LocalVariableInfo) container; if (localVar.getStart() == this) { if(target == localVar.getEnd()){ localVar.setStart(null); localVar.setEnd(null); } else { localVar.setStart(target); target.addAccessor(localVar); } } else if (localVar.getEnd() == this) { if(target == localVar.getStar... | private void changeTarget(AccessorContainer container, InstructionHandle target) { if (container instanceof JumpInstruction) { ((JumpInstruction)container).setTarget(target); target.addAccessor(container); } else if (container instanceof SwitchInstruction) { SwitchInstruction current = (SwitchIns... |
ITypedRegion startPartition = document.getPartition(command.offset); | ITypedRegion startPartition = SchemeTextUtilities.getPartition(document, command.offset); | public void customizeDocumentCommand(IDocument document, DocumentCommand command) { try { if (command.text.length() == 0 && command.length == 1) { char currentChar; currentChar = document.getChar(command.offset); if (currentChar == '(' || currentChar ==... |
public BackMatrixPairDPCursor(ResidueList seq1, ResidueList seq2, PairDPMatrix matrix) { numStates = matrix.States().length; | public BackMatrixPairDPCursor( ResidueList seq1, ResidueList seq2, PairDPMatrix matrix ) { State[] states = matrix.States(); numStates = states.length; | public BackMatrixPairDPCursor(ResidueList seq1, ResidueList seq2, PairDPMatrix matrix) { numStates = matrix.States().length; zeroCol = new double[numStates]; // don't touch this, please... for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; sMatrix = matrix.getScoreArr... |
zeroCol = new double[numStates]; for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; sMatrix = matrix.getScoreArray(); | zeroCol = new double[numStates]; zeroECol = new double[getDotStatesIndex()]; for (int i = 0; i < zeroCol.length; ++i) { zeroCol[i] = Double.NEGATIVE_INFINITY; } for (int i = 0; i < zeroECol.length; i++) { zeroECol[i] = Double.NEGATIVE_INFINITY; } | public BackMatrixPairDPCursor(ResidueList seq1, ResidueList seq2, PairDPMatrix matrix) { numStates = matrix.States().length; zeroCol = new double[numStates]; // don't touch this, please... for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; sMatrix = matrix.getScoreArr... |
pos = new int[2]; pos[0] = seq1.length() + 1; pos[1] = seq2.length() + 1; seqs = new ResidueList[2]; seqs[0] = seq1; seqs[1] = seq2; | sMatrix = matrix.getScoreArray(); eMatrix = new double[sMatrix.length][sMatrix[0].length][getDotStatesIndex()]; pos = new int[2]; pos[0] = seq1.length() + 1; pos[1] = seq2.length() + 1; seqs = new ResidueList[2]; seqs[0] = seq1; seqs[1] = seq2; | public BackMatrixPairDPCursor(ResidueList seq1, ResidueList seq2, PairDPMatrix matrix) { numStates = matrix.States().length; zeroCol = new double[numStates]; // don't touch this, please... for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; sMatrix = matrix.getScoreArr... |
if (coords[0] == -1 || coords[1] == -1 || coords[0] == seqs[0].length() + 2 || coords[1] == seqs[1].length() + 2) return zeroCol; return (double[]) sMatrix[coords[0]][coords[1]]; | if ( coords[0] == -1 || coords[1] == -1 || coords[0] == seqs[0].length() + 2 || coords[1] == seqs[1].length() + 2 ) { return zeroCol; } else { return sMatrix[coords[0]][coords[1]]; } | public double[] getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1 || coords[0] == seqs[0].length() + 2 || coords[1] == seqs[1].length() + 2) return zeroCol; return (double[]) sMatrix[coords[0]][coords[1]]; } |
if (poz > seqs[dim].length() + 1) return null; if (poz == 0 || poz > seqs[dim].length()) return MagicalState.MAGICAL_RESIDUE; return seqs[dim].residueAt(poz); | if (poz > seqs[dim].length() + 1) { return null; } if (poz == 0 || poz > seqs[dim].length()) { return MagicalState.MAGICAL_RESIDUE; } return seqs[dim].residueAt(poz); | public Residue residue(int dim, int poz) { if (poz > seqs[dim].length() + 1) return null; if (poz == 0 || poz > seqs[dim].length()) return MagicalState.MAGICAL_RESIDUE; return seqs[dim].residueAt(poz); } |
double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { | double[] curCol = matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { | private void backwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { // System.out.println("State = " + states[l].getName()); if (states[l] inst... |
if (states[l] instanceof EmissionState) advance = ((EmissionState) states[l]).getAdvance(); else advance = ia00; | if (states[l] instanceof EmissionState) { advance = ((EmissionState) states[l]).getAdvance(); } else { advance = ia00; } | private void backwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { // System.out.println("State = " + states[l].getName()); if (states[l] inst... |
double score = 0.0; int [] tr = transitions[l]; double[] trs = transitionScores[l]; | int destI = tr[ci]; State destS = states[destI]; if (destS instanceof EmissionState) { advance = ((EmissionState)destS).getAdvance(); Residue res = resMatrix[advance[0]][advance[1]]; if (res == null) { weight = Double.NEGATIVE_INFINITY; } else if (! (destS instanceof EmissionState)) { weight = 0.0; } else { weight = em... | private void backwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { // System.out.println("State = " + states[l].getName()); if (states[l] inst... |
int ci = 0; while (ci < tr.length && sourceScores[ci] == Double.NEGATIVE_INFINITY) { ++ci; } double constant = (ci < tr.length) ? sourceScores[ci] : 0.0; for (int kc = 0; kc < tr.length; ++kc) { | private void backwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { // System.out.println("State = " + states[l].getName()); if (states[l] inst... | |
double[] sourceScores = new double[tr.length]; for (int ci = 0; ci < tr.length; ++ci) { double[] sCol; double weight = 0.0; if (states[tr[ci]] instanceof EmissionState) { advance = ((EmissionState)states[tr[ci]]).getAdvance(); Residue res = resMatrix[advance[0]][advance[1]]; if (res == null) { weight = Double.NEGATIVE... | int k = tr[kc]; if (sourceScores[kc] != Double.NEGATIVE_INFINITY) { double t = trs[kc]; score += Math.exp(t + sourceScores[kc] - constant); } } curCol[l] = Math.log(score) + constant; } | private void backwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = states.length - 1; l >= 0; --l) { // System.out.println("State = " + states[l].getName()); if (states[l] inst... |
colId[0] = i; colId[1] = j; matrix[0][0] = cursor.getColumn(colId); colId[0]++; matrix[1][0] = cursor.getColumn(colId); colId[1]++; matrix[1][1] = cursor.getColumn(colId); colId[0]--; matrix[0][1] = cursor.getColumn(colId); | ress.clear(); ress.add(cursor.residue(0, i)); ress.add(cursor.residue(1, j)); resMatrixF[1][1] = getResWrapper(alpha, ress); ress.clear(); ress.add(cursor.residue(0, i)); ress.add(AlphabetManager.instance().getGapResidue()); resMatrixF[1][0] = getResWrapper(alpha, ress); ress.clear(); ress.add(AlphabetManager.instance(... | private void backwardPrepareCol(int i, int j) throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { // System.out.println("*** (" + i + "," + j + ")"); ress.clear(); ress.add(cursor.residue(0, i+1)); ress.add(cursor.residue(1, j+1)); // resMatrix[1][1] = alpha.getResidue(ress); r... |
backwardCalcStepMatrix(); | colId[0] = i; colId[1] = j; matrix[0][0] = cursor.getColumn(colId); emission[0][0] = cursor.getEmission(colId); colId[0]++; matrix[1][0] = cursor.getColumn(colId); emission[1][0] = cursor.getEmission(colId); colId[1]++; matrix[1][1] = cursor.getColumn(colId); emission[1][1] = cursor.getEmission(colId); colId[0]--; mat... | private void backwardPrepareCol(int i, int j) throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { // System.out.println("*** (" + i + "," + j + ")"); ress.clear(); ress.add(cursor.residue(0, i+1)); ress.add(cursor.residue(1, j+1)); // resMatrix[1][1] = alpha.getResidue(ress); r... |
double[] col = cursor.getCurrentColumn(); for (int l = 0; l < states.length; ++l) col[l] = (states[l] == magicalState) ? 0.0 : Double.NEGATIVE_INFINITY; | double[] col = cursor.getCurrentColumn(); for (int l = 0; l < states.length; ++l) { col[l] = (states[l] == magicalState) ? 0.0 : Double.NEGATIVE_INFINITY; } | public double runBackward(ResidueList seq0, ResidueList seq1, PairDPCursor curs) throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { states = getStates(); cursor = curs; alpha = (CrossProductAlphabet) getModel().emissionAlphabet(); // initialization double[] col = curso... |
col = cursor.getColumn(ia00); int l = 0; while (states[l] != magicalState) ++l; | col = cursor.getColumn(ia00); int l = 0; while (states[l] != magicalState) { ++l; } | public double runBackward(ResidueList seq0, ResidueList seq1, PairDPCursor curs) throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { states = getStates(); cursor = curs; alpha = (CrossProductAlphabet) getModel().emissionAlphabet(); // initialization double[] col = curso... |
double[] curCol = (double[]) matrix[0][0]; | double[] curCol = matrix[0][0]; | private void forwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = 0; l < states.length; ++l) { if (initializationHack && states[l] == magicalState) { System.out.println("Init fixu... |
System.out.println("Init fixup"); continue; | continue; | private void forwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = 0; l < states.length; ++l) { if (initializationHack && states[l] == magicalState) { System.out.println("Init fixu... |
double[] sCol = (double[]) matrix[advance[0]][advance[1]]; | double[] sCol = matrix[advance[0]][advance[1]]; | private void forwardCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; for (int l = 0; l < states.length; ++l) { if (initializationHack && states[l] == magicalState) { System.out.println("Init fixu... |
s1cur = new Object[seq2.length() + 2]; s1prev = new Object[seq2.length() + 2]; s2cur = new Object[seq1.length() + 2]; s2prev = new Object[seq1.length() + 2]; | s1cur = new double[seq2.length() + 2][]; s1prev = new double[seq2.length() + 2][]; s2cur = new double[seq1.length() + 2][]; s2prev = new double[seq1.length() + 2][]; | public LightPairDPCursor(ResidueList seq1, ResidueList seq2, int states, boolean bp) { this.storeBPs = bp; numStates = states; s1cur = new Object[seq2.length() + 2]; s1prev = new Object[seq2.length() + 2]; s2cur = new Object[seq1.length() + 2]; s2prev = new Object[seq1.length() + 2]; if (storeBPs) { s1curB... |
if (storeBPs) { s1curBP = new Object[seq2.length() + 2]; s1prevBP = new Object[seq2.length() + 2]; s2curBP = new Object[seq1.length() + 2]; s2prevBP = new Object[seq1.length() + 2]; zeroColBP = new BackPointer[numStates]; s1curBP[0] = s2curBP[0] = new BackPointer[numStates]; } | if (storeBPs) { s1curBP = new BackPointer[seq2.length() + 2][]; s1prevBP = new BackPointer[seq2.length() + 2][]; s2curBP = new BackPointer[seq1.length() + 2][]; s2prevBP = new BackPointer[seq1.length() + 2][]; zeroColBP = new BackPointer[numStates]; s1curBP[0] = s2curBP[0] = new BackPointer[numStates]; } | public LightPairDPCursor(ResidueList seq1, ResidueList seq2, int states, boolean bp) { this.storeBPs = bp; numStates = states; s1cur = new Object[seq2.length() + 2]; s1prev = new Object[seq2.length() + 2]; s2cur = new Object[seq1.length() + 2]; s2prev = new Object[seq1.length() + 2]; if (storeBPs) { s1curB... |
zeroCol = new double[numStates]; for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; | zeroCol = new double[numStates]; for (int i = 0; i < zeroCol.length; ++i) { zeroCol[i] = Double.NEGATIVE_INFINITY; } | public LightPairDPCursor(ResidueList seq1, ResidueList seq2, int states, boolean bp) { this.storeBPs = bp; numStates = states; s1cur = new Object[seq2.length() + 2]; s1prev = new Object[seq2.length() + 2]; s2cur = new Object[seq1.length() + 2]; s2prev = new Object[seq1.length() + 2]; if (storeBPs) { s1curB... |
if (coords[0] == -1 || coords[1] == -1) return zeroCol; | if (coords[0] == -1 || coords[1] == -1) { return zeroCol; } | public double[] _getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol;// if (heavyMatrix[coords[0]][coords[1]] == null)// heavyMatrix[coords[0]][coords[1]] = new double[numStates];// return (double[])... |
return (double[]) s1cur[coords[1]]; | return s1cur[coords[1]]; | public double[] _getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol;// if (heavyMatrix[coords[0]][coords[1]] == null)// heavyMatrix[coords[0]][coords[1]] = new double[numStates];// return (double[])... |
return (double[]) s2cur[coords[0]]; | return s2cur[coords[0]]; | public double[] _getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol;// if (heavyMatrix[coords[0]][coords[1]] == null)// heavyMatrix[coords[0]][coords[1]] = new double[numStates];// return (double[])... |
return (double[]) s1prev[coords[1]]; | return s1prev[coords[1]]; | public double[] _getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol;// if (heavyMatrix[coords[0]][coords[1]] == null)// heavyMatrix[coords[0]][coords[1]] = new double[numStates];// return (double[])... |
return (double[]) s2prev[coords[0]]; | return s2prev[coords[0]]; | public double[] _getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol;// if (heavyMatrix[coords[0]][coords[1]] == null)// heavyMatrix[coords[0]][coords[1]] = new double[numStates];// return (double[])... |
Object[] tmp; | double[][] tmpS; BackPointer[][] tmpBP; | public void advance(int dim) { pos[dim]++; Object[] tmp; if (dim == 0) { tmp = s1cur; s1cur = s1prev; s1prev = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) s1cur[i] = new double[numStates]; } if (storeBPs) { tmp = s1curBP; s1curBP = s1prevBP; s1prevBP = tmp; ... |
if (dim == 0) { tmp = s1cur; s1cur = s1prev; s1prev = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) s1cur[i] = new double[numStates]; } | if (dim == 0) { tmpS = s1cur; s1cur = s1prev; s1prev = tmpS; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) { s1cur[i] = new double[numStates]; } } | public void advance(int dim) { pos[dim]++; Object[] tmp; if (dim == 0) { tmp = s1cur; s1cur = s1prev; s1prev = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) s1cur[i] = new double[numStates]; } if (storeBPs) { tmp = s1curBP; s1curBP = s1prevBP; s1prevBP = tmp; ... |
if (storeBPs) { tmp = s1curBP; s1curBP = s1prevBP; s1prevBP = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1curBP[i] == null) s1curBP[i] = new BackPointer[numStates]; } } } else if (dim == 1) { tmp = s2cur; s2cur = s2prev; s2prev = tmp; for (int i = 0; i <= pos[0]; ++i) { if (s2cur[i] == null) s2cur[i] = new double[nu... | if (storeBPs) { tmpBP = s1curBP; s1curBP = s1prevBP; s1prevBP = tmpBP; for (int i = 0; i <= pos[1]; ++i) { if (s1curBP[i] == null) { s1curBP[i] = new BackPointer[numStates]; } } } } else if (dim == 1) { tmpS = s2cur; s2cur = s2prev; s2prev = tmpS; for (int i = 0; i <= pos[0]; ++i) { if (s2cur[i] == null) { s2cur[i] = n... | public void advance(int dim) { pos[dim]++; Object[] tmp; if (dim == 0) { tmp = s1cur; s1cur = s1prev; s1prev = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) s1cur[i] = new double[numStates]; } if (storeBPs) { tmp = s1curBP; s1curBP = s1prevBP; s1prevBP = tmp; ... |
if (storeBPs) { tmp = s2curBP; s2curBP = s2prevBP; s2prevBP = tmp; for (int i = 0; i <= pos[0]; ++i) { if (s2curBP[i] == null) s2curBP[i] = new BackPointer[numStates]; } } } | if (storeBPs) { tmpBP = s2curBP; s2curBP = s2prevBP; s2prevBP = tmpBP; for (int i = 0; i <= pos[0]; ++i) { if (s2curBP[i] == null) { s2curBP[i] = new BackPointer[numStates]; } } } } | public void advance(int dim) { pos[dim]++; Object[] tmp; if (dim == 0) { tmp = s1cur; s1cur = s1prev; s1prev = tmp; for (int i = 0; i <= pos[1]; ++i) { if (s1cur[i] == null) s1cur[i] = new double[numStates]; } if (storeBPs) { tmp = s1curBP; s1curBP = s1prevBP; s1prevBP = tmp; ... |
if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers."); | if (!storeBPs) { throw new NoSuchElementException( "This cursor isn't storing BackPointers." ); } | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
if (coords[0] == -1 || coords[1] == -1) return zeroColBP; | if (coords[0] == -1 || coords[1] == -1) { return zeroColBP; } | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
return (BackPointer[]) s1curBP[coords[1]]; | return s1curBP[coords[1]]; | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
return (BackPointer[]) s2curBP[coords[0]]; | return s2curBP[coords[0]]; | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
return (BackPointer[]) s1prevBP[coords[1]]; | return s1prevBP[coords[1]]; | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
return (BackPointer[]) s2prevBP[coords[0]]; | return s2prevBP[coords[0]]; | public BackPointer[] getBackPointers(int[] coords) { if (!storeBPs) throw new NoSuchElementException("This cursor isn't storing BackPointers.");// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroColBP; if (coords[0] == pos[0] && (s1cur... |
if (poz == 0 || poz > seqs[dim].length()) return MagicalState.MAGICAL_RESIDUE; return seqs[dim].residueAt(poz); | if (poz == 0 || poz > seqs[dim].length()) { return MagicalState.MAGICAL_RESIDUE; } else { return seqs[dim].residueAt(poz); } | public Residue residue(int dim, int poz) { if (poz == 0 || poz > seqs[dim].length()) return MagicalState.MAGICAL_RESIDUE; return seqs[dim].residueAt(poz); } |
zeroCol = new double[numStates]; for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; | zeroCol = new double[numStates]; for (int i = 0; i < zeroCol.length; ++i) { zeroCol[i] = Double.NEGATIVE_INFINITY; } | public MatrixPairDPCursor(ResidueList seq1, ResidueList seq2, PairDPMatrix matrix) { numStates = matrix.States().length; zeroCol = new double[numStates]; // don't touch this, please... for (int i = 0; i < zeroCol.length; ++i) zeroCol[i] = Double.NEGATIVE_INFINITY; sMatrix = matrix.getScoreArray()... |
if (coords[0] == -1 || coords[1] == -1) return zeroCol; return (double[]) sMatrix[coords[0]][coords[1]]; | if (coords[0] == -1 || coords[1] == -1) { return zeroCol; } else { return (double[]) sMatrix[coords[0]][coords[1]]; } | public double[] getColumn(int[] coords) {// System.out.println("!!! getting " + coords[0] + "," + coords[1]); if (coords[0] == -1 || coords[1] == -1) return zeroCol; return (double[]) sMatrix[coords[0]][coords[1]]; } |
public void advance(int dim); | void advance(int dim); | public void advance(int dim); |
public boolean canAdvance(int dim); | boolean canAdvance(int dim); | public boolean canAdvance(int dim); |
public BackPointer[] getBackPointers(int[] coords); | BackPointer[] getBackPointers(int[] coords); | public BackPointer[] getBackPointers(int[] coords); |
public double[] getColumn(int[] coords); | double[] getColumn(int[] coords); | public double[] getColumn(int[] coords); |
public double[] getCurrentColumn(); | double[] getCurrentColumn(); | public double[] getCurrentColumn(); |
public int getPos(int dim); | int getPos(int dim); | public int getPos(int dim); |
public Residue residue(int dim, int poz); | Residue residue(int dim, int poz); | public Residue residue(int dim, int poz); |
BackPointer[] curBPs = (BackPointer[]) bpMatrix[0][0]; | BackPointer[] curBPs = bpMatrix[0][0]; | private void viterbiCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; BackPointer[] curBPs = (BackPointer[]) bpMatrix[0][0]; for (int l = 0; l < states.length; ++l) { // System.out.println("State =... |
sCol = (double[]) matrix[advance[0]][advance[1]]; bpCol = (BackPointer[]) bpMatrix[advance[0]][advance[1]]; | sCol = matrix[advance[0]][advance[1]]; bpCol = bpMatrix[advance[0]][advance[1]]; | private void viterbiCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; BackPointer[] curBPs = (BackPointer[]) bpMatrix[0][0]; for (int l = 0; l < states.length; ++l) { // System.out.println("State =... |
sCol = (double[]) matrix[0][0]; bpCol = (BackPointer[]) bpMatrix[0][0]; | sCol = matrix[0][0]; bpCol = bpMatrix[0][0]; | private void viterbiCalcStepMatrix() throws IllegalResidueException, IllegalAlphabetException, IllegalTransitionException { double[] curCol = (double[]) matrix[0][0]; int[] advance; BackPointer[] curBPs = (BackPointer[]) bpMatrix[0][0]; for (int l = 0; l < states.length; ++l) { // System.out.println("State =... |
System.err.println(dbURL + " " + dbUser + " " + dbPass); | public BioSQLSequenceDB(String dbURL, String dbUser, String dbPass, String biodatabase, boolean create) throws BioException { helper = DBHelper.getDBHelperForURL(dbURL); pool = new JDBCConnectionPool(dbURL, dbUser, dbPass); // Check that BioSQL database schema is post-Singapore if (! isD... | |
"(biodatabase_id, name, accession, version, division) " + "values (?, ?, ?, ?, ?)"); | "(biodatabase_id, name, accession, version, division" + (taxon_id == -1 ? "" : ", taxon_id") + ") " + "values (?, ?, ?, ?, ?" + (taxon_id == -1 ? "" : ", ?") + ")" ); | private void _addSequence(Sequence seq) throws IllegalIDException, ChangeVetoException, BioException { String seqName = idmaker.calcID(seq); int version = 1; Alphabet seqAlpha = seq.getAlphabet(); SymbolTokenization seqToke; try { seqToke = seqAlpha.getTokenization("token"); } catch (Exception ex) { ... |
Annotation ann = seq.getAnnotation(); | private void _addSequence(Sequence seq) throws IllegalIDException, ChangeVetoException, BioException { String seqName = idmaker.calcID(seq); int version = 1; Alphabet seqAlpha = seq.getAlphabet(); SymbolTokenization seqToke; try { seqToke = seqAlpha.getTokenization("token"); } catch (Exception ex) { ... | |
ex.printStackTrace(); | boolean isDbSchemaSupported() { if (!dbSchemaChecked) { try { Connection conn = pool.takeConnection(); PreparedStatement ps = conn.prepareStatement("select * from location limit 1"); try { ps.executeQuery(); dbSchemaSupported = true; } catch (SQLException ex) { dbSchemaSupported = false; } ... | |
protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException | protected void checkListAddresses(InternetAddress address, URL url) throws DuplicateListDataException, InvalidListDataException | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... |
boolean ownerAddy = OwnerAddress.getList(address.getAddress()) != null; boolean verpAddy = VERPAddress.getVERPBounce(address.getAddress()) != null; if (ownerAddy || verpAddy) throw new InvalidListDataException("Address cannot be used", ownerAddy, verpAddy); | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... | |
try | if (address != null) | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... |
MailingList list = this.dao.findMailingList(address); if (!list.getId().equals(okListId)) | boolean ownerAddy = OwnerAddress.getList(address.getAddress()) != null; boolean verpAddy = VERPAddress.getVERPBounce(address.getAddress()) != null; if (ownerAddy || verpAddy) throw new InvalidListDataException("Address cannot be used", ownerAddy, verpAddy); try { this.dao.findMailingList(address); | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... |
catch (NotFoundException ex) {} | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... | |
try | if (url != null) | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... |
MailingList list = this.dao.findMailingList(url); if (!list.getId().equals(okListId)) | try { this.dao.findMailingList(url); | protected void checkListAddresses(InternetAddress address, URL url, Long okListId) throws DuplicateListDataException, InvalidListDataException { // TODO: consider whether or not we should enforce any formatting of // the url here. Seems like that's a job for the web front end? boolean ownerAddy = OwnerAddress.g... |
this.checkListAddresses(address, url, null); | this.checkListAddresses(address, url); | public Long createMailingList(InternetAddress address, URL url, String description, InternetAddress[] initialOwners) throws DuplicateListDataException, InvalidListDataException { this.checkListAddresses(address, url, null); // Then create the mailing list and attach the owners. MailingList list = new MailingList(... |
this.checkListAddresses(address, url, listId); | MailingList list = this.dao.findMailingList(listId); | public void setListAddresses(Long listId, InternetAddress address, URL url) throws NotFoundException, DuplicateListDataException, InvalidListDataException { this.checkListAddresses(address, url, listId); MailingList list = this.dao.findMailingList(listId); list.setEmail(address.getAddress()); list.setUrl(url.t... |
MailingList list = this.dao.findMailingList(listId); | InternetAddress checkAddress = list.getEmail().equals(address.getAddress()) ? null : address; URL checkUrl = list.getUrl().equals(url.toString()) ? null : url; this.checkListAddresses(checkAddress, checkUrl); | public void setListAddresses(Long listId, InternetAddress address, URL url) throws NotFoundException, DuplicateListDataException, InvalidListDataException { this.checkListAddresses(address, url, listId); MailingList list = this.dao.findMailingList(listId); list.setEmail(address.getAddress()); list.setUrl(url.t... |
return super.getCClass(); | return baseType.getCClass(); | public CClass getCClass() { if (!isChecked()) { throw new InconsistencyException("type not checked"); } return super.getCClass(); } |
public void addRole(int id, Role role) throws Exception | public void addRole(int id, Role role) | public void addRole(int id, Role role) throws Exception { this.addRole(id, role, null); } |
public void addRoleValue(int id, Role role, RoleValueCollection rvc) throws Exception | public void addRoleValue(int id, Role role, RoleValueCollection rvc) | public void addRoleValue(int id, Role role, RoleValueCollection rvc) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.getRoleIdByName")); p.setString(1, role.getName()); p.setInt(2, id); int roleId = -1; ResultSet rs =... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.getRoleIdByName")); p.setString(1, role.getName()); p.setInt(2, id); int roleId = -1; ResultSet rs = p.executeQuery(); if (rs.next()) { roleId = rs.getInt("role_id"); } rs.close(); p.close(); if (r... | PreparedStatement p=null; ResultSet rs=null; try { p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.getRoleIdByName")); p.setString(1, role.getName()); p.setInt(2, id); int roleId = -1; rs = p.executeQuery(); if (rs.next()) { roleId = rs.getInt("role_id"); } rs.clo... | public void addRoleValue(int id, Role role, RoleValueCollection rvc) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.getRoleIdByName")); p.setString(1, role.getName()); p.setInt(2, id); int roleId = -1; ResultSet rs =... |
public void deleteAllRoles(int id) throws Exception | public void deleteAllRoles(int id) | public void deleteAllRoles(int id) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteAllRoleValues")); p.setInt(1, id); p.executeUpdate(); p.close(); p = JForumExecutionContext.getConnection().prepareStatement( ... |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteAllRoleValues")); p.setInt(1, id); p.executeUpdate(); p.close(); p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteAllGroupRoles")); p.se... | PreparedStatement p=null; try { p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteAllRoleValues")); p.setInt(1, id); p.executeUpdate(); p.close(); p=null; p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.delete... | public void deleteAllRoles(int id) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteAllRoleValues")); p.setInt(1, id); p.executeUpdate(); p.close(); p = JForumExecutionContext.getConnection().prepareStatement( ... |
public void deleteRole(int id, String roleName) throws Exception | public void deleteRole(int id, String roleName) | public void deleteRole(int id, String roleName) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteGroupRole")); p.setString(1, roleName); p.setInt(2, id); p.executeUpdate(); p.close(); } |
PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteGroupRole")); p.setString(1, roleName); p.setInt(2, id); p.executeUpdate(); p.close(); | PreparedStatement p=null; try { p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteGroupRole")); p.setString(1, roleName); p.setInt(2, id); p.executeUpdate(); } catch (SQLException e) { String es = "Erorr deleteRole()"; log.error(es, e); throw new RuntimeException... | public void deleteRole(int id, String roleName) throws Exception { PreparedStatement p = JForumExecutionContext.getConnection().prepareStatement( SystemGlobals.getSql("PermissionControl.deleteGroupRole")); p.setString(1, roleName); p.setInt(2, id); p.executeUpdate(); p.close(); } |
private List loadGroupRoles(List groups) throws Exception | private List loadGroupRoles(List groups) | private List loadGroupRoles(List groups) throws Exception { List groupRolesList = new ArrayList(); for (Iterator iter = groups.iterator(); iter.hasNext(); ) { Group g = (Group)iter.next(); RoleCollection roles = RolesRepository.getGroupRoles(g.getId()); if (roles == null) { roles = this.loadRoles(g.... |
public RoleCollection loadRoles(int id) throws Exception | public RoleCollection loadRoles(int id) | public RoleCollection loadRoles(int id) throws Exception { return SecurityCommon.processLoadRoles(SystemGlobals.getSql("PermissionControl.loadGroupRoles"), id); } |
public RoleCollection loadRolesByUserGroups(User user) throws Exception | public RoleCollection loadRolesByUserGroups(User user) | public RoleCollection loadRolesByUserGroups(User user) throws Exception { List groups = user.getGroupsList(); // For single group, we don't need to check for merged roles if (groups.size() == 1) { return (RoleCollection)this.loadGroupRoles(groups).get(0); } // When the user is... |
getKContext().setSource(true); this.writeProperties(fe, wr, context); this.writeChildren(fe, wr, context); getKContext().setSource(source); | else { this.writeProperties(fe, wr, context); this.writeChildren(fe, wr, context); } | public void marshal(Object elem, HierarchicalStreamWriter wr, MarshallingContext context) { FlowElement fe = (FlowElement) elem; boolean source = getKContext().isSource(); if (!source) { wr.addAttribute("_source", "true"); } getKContext().setSource(true); this.writeProperties(fe, wr, context); this.writeChild... |
boolean rDepType = rType instanceof CDependentType, lDepType = lType instanceof CDependentType; | boolean rDepType = rType instanceof CDependentType || rType.getCClass().isMixinInterface() && rType.getCClass().isNested(), lDepType = lType instanceof CDependentType || lType.getCClass().isMixinInterface() && lType.getCClass().isNested(); check( context, !(rDepType ^ lDepType), CaesarMessages.ASSIGNMENT_MIXEDTYPES); | public JExpression analyse(CExpressionContext context) throws PositionedError { TypeFactory factory = context.getTypeFactory(); if (left instanceof JParenthesedExpression) { context.reportTrouble(new CWarning(getTokenReference(), KjcMessages.PARENTHESED_LVALUE)); } left = left.analyse(new CEx... |
if ( rDepType != lDepType ){ check(context, false, CaesarMessages.ASSIGNMENT_MIXEDTYPES ); } if (rDepType == true){ | if (rDepType == true) { | public JExpression analyse(CExpressionContext context) throws PositionedError { TypeFactory factory = context.getTypeFactory(); if (left instanceof JParenthesedExpression) { context.reportTrouble(new CWarning(getTokenReference(), KjcMessages.PARENTHESED_LVALUE)); } left = left.analyse(new CEx... |
public Object buildObject(Class clazz, Object[] params); | public Object buildObject(Class clazz, List paramsList); | public Object buildObject(Class clazz, Object[] params); |
setFault(e); | recordFault(e); | public void execute() { assertNotCompleted(); try { sendTheMessage(); } catch (RuntimeException e) { setFault(e); } completed(); } |
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