page_content stringlengths 0 46.9k | metadata dict |
|---|---|
### Bug description
```
quarto check
[>] Checking versions of quarto binary dependencies...
Pandoc version 2.19.2: OK
Dart Sass version 1.32.8: OK
[>] Checking versions of qua... | {
"assignee": null,
"comments": 8,
"created_at": "2023-01-11T22:55:36Z",
"creator": "vaulot",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3936,
"state": "closed",
"title": "ERROR: SyntaxError: Unexpected token '', \"\"... is not valid JSON whe... |
See https://github.com/quarto-dev/quarto-r/issues/73#issuecomment-1379244465 | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2023-01-11T18:08:03Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.4",
"number": 3933,
"state": "open",
"title": "theme / highlighting CSS appears in cases it seems it shouldn't",
"... |
Hi,
Is there a way to obtain a numbered table caption above a single table using div elements: ":::"?
According to the documentation at [tables ](https://quarto.org/docs/authoring/tables.html) one can use div elements around multiple tables to get a a **numbered table** with the caption above using this code:
... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-01-11T09:44:45Z",
"creator": "magnusnosnes",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref",
"tables"
],
"locked": false,
"milestone": "v1.4",
"number": 3931,
"state": "open",
"title": "Table number does not... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3918
<div type='discussions-op-text'>
<sup>Originally posted by **ThierryO** January 10, 2023</sup>
With version 1.1.189 we could add custom variables to the book settings in `_quarto.yml` and use them in the template. The example below provid... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-01-10T15:40:05Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"documentation",
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 3919,
"state": "open",
"title": "Specify which portions of the YAML ... |
This comes from https://github.com/quarto-dev/quarto-r/issues/22
R users have such feature with `blogdown::new_post()` and a RStudio Addin build upon it. I believe it would be a nice feature to have in our `quarto create ...` suites of features.
This would help
* Create a post in the right place in the Quarto ... | {
"assignee": null,
"comments": 7,
"created_at": "2023-01-10T14:46:11Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 3917,
"state": "open",
"title": "[FR]: Easily add a new post in a blog e.g `quarto create post... |
Hi!
When using Rstudio, Quarto is installed locally, the option to use the Quarto preview/in general the whole Global options Quarto tab is missing, is this intentional?
Thanks a lot for checking.
... | {
"assignee": null,
"comments": 1,
"created_at": "2023-01-10T12:18:47Z",
"creator": "dschief001",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3915,
"state": "closed",
"title": "Rstudio 2022.12.0 Build 353 Quarto Preview option not available",
"url": "htt... |
for some reasons the feed does not work in my blog when I use:
https://simplepie.org/demo/?feed=https://jrcuesta.quarto.pub/nir-chemometrics%2Findex.xml
If I click on the link to the blog gives a 404 error, and for other side the images does not appear.
Please let me know if something can be done
Thanks | {
"assignee": "dragonstyle",
"comments": 9,
"created_at": "2023-01-10T11:59:57Z",
"creator": "jrcuesta",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": "v1.3",
"number": 3916,
"state": "closed",
"title": "Problems with the feed in my quarto blog",
"url... |
### Bug description
## Description
The behaviour of `abstract-title` is not consistent with other metadata labels. Other labels like `author-title` and `published-title` can be specified under `format` *or* the top level of a document, but `abstract-title` only works when specified at the top level. As a consequenc... | {
"assignee": null,
"comments": 0,
"created_at": "2023-01-10T00:49:33Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3911,
"state": "closed",
"title": "Inconsistent behaviour providing your own `abstract-title` metad... |
See https://github.com/quarto-dev/quarto-cli/discussions/3899
This works
````markdown
---
title: "Document"
format:
html:
embed-resources: false
---
```{r}
knitr::opts_chunk$set(dev = c("png", "pdf", "svg"))
```
```{r}
library(ggplot2)
ggplot() + ggtitle("this is a title")
```
````
... | {
"assignee": "cderv",
"comments": 0,
"created_at": "2023-01-09T21:46:51Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3909,
"state": "closed",
"title": "Error setting multipe dev value in knitr opts_chunk in YAML",
"u... |
From https://github.com/quarto-dev/quarto-r/issues/40
Simple `.qmd` document with only inline code syntax, starting with `r`
````markdown
`r ** 2`
````
This will be recognized as R inline code and knitr engine will be required. However, for users doing only markdown writing this is surprising.
Unfortunate... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2023-01-09T21:34:08Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3908,
"state": "closed",
"title": "Auto binding will use knitr engine when only a inline code syntax is in the d... |
### Bug description
I am attempting to use quarto with jupyter on my macbook and it is failing to find the python3 kernel despite it being installed (and findable by jupyter).
See the following,
```shell
> quarto check jupyter
[β] Checking Python 3 installation....OK
Version: 3.10.9
Path: /opt/... | {
"assignee": null,
"comments": 1,
"created_at": "2023-01-09T17:24:59Z",
"creator": "rundel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3902,
"state": "closed",
"title": "Unable to find python3 kernel on MacOS 13.2 (M1)",
"url": "https://g... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3876
<div type='discussions-op-text'>
<sup>Originally posted by **bvancil** January 6, 2023</sup>
Greetings! I'm happy to try to put together an alternative minimal reproducible example in another language if someone can suggest a Jupyter ker... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-01-09T16:28:27Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug",
"yaml-validation"
],
"locked": false,
"milestone": "v1.3",
"number": 3901,
"state": "closed",
"title": "How to specify cell parameters for lang... |
To avoid confusion like that in #3880, we should explicitly document the required order in fenced div attributes (this will become more acute as we lean into div and span classes more strongly to denote custom elements.) | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-01-09T16:21:30Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"lint"
],
"locked": false,
"milestone": "Future",
"number": 3900,
"state": "open",
"title": "Document fenced div attribute syntax",
"... |
The discussion comments suggest the `layout` option is the culprit:
````
```{r echo=FALSE, fig.height=30, layout="l-page"}
cross_plot_clean
```
````
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3761
<div type='discussions-op-text'>
<sup>Originally posted by **werkstattcodes** ... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-01-09T15:57:23Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3897,
"state": "closed",
"title": "lua error message when rendering blog post",
... |
### Bug description
First of all, thank you for the amazing tool!
I'm trying to produce an HTML report from .QMD and getting the following error:
> ERROR: TypeError: Cannot read properties of undefined (reading 'startsWith')
It seems to be related to dyno-dom (as per debug log):
> Error loading deno-dom-nativ... | {
"assignee": null,
"comments": 5,
"created_at": "2023-01-09T15:02:59Z",
"creator": "svilupp",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3896,
"state": "closed",
"title": "Error loading deno-dom-native / Cannot read proper... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3798
<div type='discussions-op-text'>
<sup>Originally posted by **justanothergithubber** December 29, 2022</sup>
Is it possible to move "Other Formats" that is normally located in the margin sidebar at the right to the left? (like Table of Con... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-01-09T13:40:57Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 3895,
"state": "open",
"title": "Move \"Other Formats\"",
"url": "https://githu... |
## Description:
Embedding local videos with the video shortcode fails.
## Steps to Reproduce:
- Create `index.qmd`
Where `local-video.mp4` is in the same directory as `index.qmd`.
```
---
format:
revealjs:
embed-resources: true
---
{{< video local-video.mp4 >}}
```
or
```
---
format:
... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2023-01-09T10:56:41Z",
"creator": "Balaika",
"is_pull_request": false,
"labels": [
"bug",
"video"
],
"locked": false,
"milestone": "v1.4",
"number": 3892,
"state": "open",
"title": "Embedding local videos with the video shortcode fai... |
### Bug description
Unless I missed something, it seems that the anchor symbols do not appear for headers of level 1.
On your documentation site built with Quarto, it isn't an issue as your top level is `h2` (`## Some section title`), but on my site, I am starting at level 1 and I am missing those nice easy ancho... | {
"assignee": null,
"comments": 8,
"created_at": "2023-01-09T03:05:00Z",
"creator": "prosoitos",
"is_pull_request": false,
"labels": [
"bug",
"lint"
],
"locked": false,
"milestone": null,
"number": 3891,
"state": "closed",
"title": "Anchors not showing while hovering over headers of leve... |
### Bug description
On a fresh install on Windows 10, I run into the following error when doing `quarto check` (or when trying to preview):
```
ERROR: NotFound: The system cannot find the file specified. (os error 2), remove 'C:\Users\Jakob\AppData\Local\quarto\sass\397ef2e52d54cf686e4908b90039e9db.css'
```
Th... | {
"assignee": "dragonstyle",
"comments": 22,
"created_at": "2023-01-07T14:23:07Z",
"creator": "jfb-h",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"windows",
"stale"
],
"locked": false,
"milestone": "v1.4",
"number": 3883,
"state": "open",
"title": "Missing .css f... |
### Bug description
This bug requires a bit of setup, so I've included a zip file with a reprex website: [reprex-website.zip](https://github.com/quarto-dev/quarto-cli/files/10365861/reprex-website.zip).
## Terminology
I'm using the term "series" to refer to a listing page that lists listing pages. The latter lis... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-01-07T09:30:18Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3881,
"state": "closed",
"title": "Citation URLs are wrong in posts of nested listing pa... |
### Bug description
Hello everyone
I'm having difficulties with crossreferencing a table in a separate document. Does crossreferencing between documents, which are included with the include-shortcode in a main file, even work?
I have a table in a file called `linux_bash_commands.qmd` that is given the followin... | {
"assignee": null,
"comments": 4,
"created_at": "2023-01-07T08:01:30Z",
"creator": "joelvonrotz",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3880,
"state": "closed",
"title": "Crossreferencing between documents doesn't work",
"url": "https... |
As you probably know, [Hugo renders content](https://gohugo.io/content-management/organization/) from a path such as `content/section/my_page.md` to `publish/section/my_page/index.html`. This breaks the default image links, which assumes the rendered version remains at the same directory depth, instead of being promot... | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2023-01-07T00:26:10Z",
"creator": "cboettig",
"is_pull_request": false,
"labels": [
"hugo"
],
"locked": false,
"milestone": "v1.3",
"number": 3930,
"state": "closed",
"title": "figure paths are broken in hugo-md format",
"url": "https:... |
### Bug description
Adding a label to a chunk will create an empty figure caption when `fig-cap` is undefined (this happens with the knitr-style syntax for chunk labels too). Figure captions should only appear if you opt into them with `fig-cap`, so this feels like a bug.
Here's a reprex:
````qmd
---
title: "R... | {
"assignee": null,
"comments": 3,
"created_at": "2023-01-06T23:07:02Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3878,
"state": "closed",
"title": "Chunk labels create empty figure captions when `fig-cap` is unde... |
Currently, `fig-alt` does not work for mermaid diagram. However, there seems a workaround. Mermaid has their own [accessibility options](https://mermaid.js.org/config/accessibility.html).
@cscheid -- We may want to bind `fig-cap` to `accTitle` and `fig-alt` to `accDescr`. Other additional accessibility fixes that I ... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-01-06T17:20:41Z",
"creator": "jooyoungseo",
"is_pull_request": false,
"labels": [
"bug",
"accessibility",
"mermaid"
],
"locked": false,
"milestone": "v1.4",
"number": 3873,
"state": "open",
"title": "[Accessibility] fig-alt ... |
The following document renders properly in quarto 1.2, but incorrectly (with cross ref warning as well) in quarto 1.3. The figure appears to not be processed properly when inside the callout.
```
---
title: Xref Test
format: html
---
::::{.callout-note}
Hi there, I'm putting a figure in a call and then r... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-01-06T15:29:41Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3872,
"state": "closed",
"title": "Cross Referencing Inside Callouts Not Working",
"url": "https://githu... |
### Bug description
Hi,
I have a multi page quarto website, with a `index.qmd` and multiple linked chapters in a chapters folder.
When I try and render the `index.qmd` it sometimes works and sometimes doesn't with the error:
> ERROR: The directory name is invalid. (os error 267), readdir 'C:\<address>\index_... | {
"assignee": "cderv",
"comments": 4,
"created_at": "2023-01-06T15:10:13Z",
"creator": "peterejkemp",
"is_pull_request": false,
"labels": [
"bug",
"windows",
"file-systems"
],
"locked": false,
"milestone": "v1.4",
"number": 3871,
"state": "open",
"title": "Rendering: ERROR: The direc... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3862
<div type='discussions-op-text'>
<sup>Originally posted by **fredguth** January 5, 2023</sup>
I decided to download the 1.3.83 pre-release version and noticed that a template I created (`fredguth/tufte-quarto`) is not working properly in... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2023-01-06T13:18:32Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3870,
"state": "closed",
"title": "Pre-release version with custom templates",
"url": "https://githu... |
### Bug description
I want to make use of the HTML [`<template />` tag](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/template) to allow me to create DOM elements which I can then reuse via JavaScript.
I am quarto feature [include-after-body](https://quarto.org/docs/output-formats/html-basics.html#inclu... | {
"assignee": null,
"comments": 4,
"created_at": "2023-01-05T19:39:22Z",
"creator": "erichgoldman",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3864,
"state": "closed",
"title": "Content of HTML <template /> tag is stripped"... |
The documentation for [conditional content](https://quarto.org/docs/authoring/conditional.html) only discusses the use of divs, but you can also use inline CSS for conditional content. It would be nice if this was documented on the conditional content page too.
Here's a reprex .qmd for demonstration:
```qmd
---
... | {
"assignee": null,
"comments": 1,
"created_at": "2023-01-05T19:19:36Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "Future",
"number": 3863,
"state": "open",
"title": "Document inline conditional content",
"url": "http... |
### Bug description
I'm having a problem with the headings of unnumbered sections if they are after a numbered section (or table of contents). Somehow they inherit the headings from the last numbered section (or table of contents).
Here is a reproducible example:
![1-TOC](https://user-images.githubusercontent.co... | {
"assignee": null,
"comments": 1,
"created_at": "2023-01-05T10:17:54Z",
"creator": "SbastianGarzon",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3854,
"state": "closed",
"title": "Heading bug (PDF-unnumbered sections)",
"url": "https://gith... |
To reproduce
* Clone `quarto-journals/acs`
* `quarto render template.qmd`
This will error like this
````
$ quarto render template.qmd
ERROR: La syntaxe du nom de fichier, de rΓ©pertoire ou de volume est incorrecte. (os error 123), stat 'C:\Users\chris\Documents\DEV_R\quarto-journals\acs\_extensions\acs\_exte... | {
"assignee": null,
"comments": 0,
"created_at": "2023-01-04T18:57:27Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3850,
"state": "closed",
"title": "Lua Filters in embeded extensions is wrongly resolved ",
"url": "http... |
(edit: small change to correct a typo)
### Bug description
When creating a Jupyter notebook using Quarto, I'm attempting to use fenced divs to explicitly separate notebook cells, using the examples in the [Pandoc manual](https://pandoc.org/MANUAL.html#jupyter-notebooks).
This works for a simple example when I ... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-01-04T15:23:34Z",
"creator": "tomsutch",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3847,
"state": "closed",
"title": "ipynb output: explicitly separating notebook cells not possib... |
Using a previous version of quarto (1.1.189) I had added some custom rules to a scss file that tweaked the formatting of the title/subtitle/author/institute fields on the title slide (size, bolding, italics, alignment etc) - in particular I had aligned all of the text to the left using the following rule:
```
#titl... | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2023-01-04T09:48:43Z",
"creator": "drcaprosser",
"is_pull_request": false,
"labels": [
"verify-fixed"
],
"locked": false,
"milestone": "v1.3",
"number": 3843,
"state": "closed",
"title": "quarto-title-author-name and quarto-title-aff... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3836
<div type='discussions-op-text'>
<sup>Originally posted by **agrogan1** January 3, 2023</sup>
Hello! Is there a way to make a quarto book citeable? The Quarto documentation, [Quarto - Creating Citeable Articles](https://quarto.org/docs/a... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2023-01-03T19:34:43Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"enhancement",
"books"
],
"locked": false,
"milestone": "v1.4",
"number": 3838,
"state": "open",
"title": "Add `citable article` support for b... |
We need a fourth argument like `raw_args` that passes arguments untransformed, so that we don't accidentally interpret (eg) URLs with `=` in them as kwargs. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-01-03T15:44:48Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3833,
"state": "closed",
"title": "shortcode API needs updating",
"url": "https://github.com/qu... |
Just opening a separate issue building on #1323. Icons can now be included in the navbar, but not yet the sidebar. | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2023-01-03T02:37:04Z",
"creator": "jhelvy",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.3",
"number": 3830,
"state": "closed",
"title": "Include icons and text in sidebar ",
"url": "http... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3826
<div type='discussions-op-text'>
<sup>Originally posted by **astoeriko** January 2, 2023</sup>
In my document, I would like to have some figures in the main column, and some figures as smaller images in the margin column. The figures in ... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-01-03T01:41:56Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3829,
"state": "closed",
"title": "Don't reposition caption in margin figures when `cap-location: marg... |
### Bug description
We get an spurious reference page when using biblatex citation method in PDF output, because biblatex adds its own header.
### Reproduce
index.qmd
```
# Start
See @knuth84 for discussion of literate programming.
```
_quarto.yml
```
project:
type: book
book:
title: "test"
... | {
"assignee": null,
"comments": 1,
"created_at": "2023-01-02T20:58:01Z",
"creator": "fulem",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3825,
"state": "closed",
"title": "Spurious Reference page when using biblatex in PDF output",
"url": "h... |
### Bug description
Proof environment title customization is not working in PDF output when using both `language` and `lang` keywords. It doesn't matter what is the base language or document class.
Reproduce:
index.qmd
```
# Start
::: {#thm-thm}
Foo
:::
::: {.proof}
This block should be titled "Test", but... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-01-02T03:59:47Z",
"creator": "fulem",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3820,
"state": "closed",
"title": "Proof environment title customization not working in PDF outpu... |
In the [PDF Engines](https://quarto.org/docs/output-formats/pdf-engine.html) page of the Quarto online docs it says that I can install tinytex using the command line:
```
quarto install tinytex
```
However, at least under macOS 13.1 there is no quarto executable anywhere on my hard drive. I did find a Ruby file... | {
"assignee": null,
"comments": 6,
"created_at": "2023-01-01T20:04:51Z",
"creator": "rickdonnelly",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3817,
"state": "closed",
"title": "quarto command line installs fails in macOS",
"url": "... |
I am recycling old R markdown in Quarto. I need to render as pdf to use as class notes. The old code includes references that work.
If I now toggle the RStudio viewer from "Source" to "Visual" and render the pdf, the references fail to appear. If I toggle back I see that [@definetti] has been turned into [\@definetti]... | {
"assignee": null,
"comments": 2,
"created_at": "2023-01-01T15:27:09Z",
"creator": "gp1d",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3814,
"state": "closed",
"title": "automatic addition of \\ in front of @ when toggling from \"source\" to \"visual\" an... |
Add {.scrollable} to slide title and numbered lists greater than 9 show only the one's digits. In a qmd file add to a slide a list of items 1-15. They can be number with just 1., 1., 1. or 1. 2. 3. But once it gets to 10, the rendered output with reveal.js only show the last single digit.
```
## Slide title {.scr... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-01-01T07:43:25Z",
"creator": "javajon",
"is_pull_request": false,
"labels": [
"revealjs"
],
"locked": false,
"milestone": "v1.3",
"number": 4283,
"state": "closed",
"title": "Numbered lists greater than 9 show only the one's digits ... |
The `qmd` file cannot be rendered to `docx` or `pdf` files if it contains mermaid or dot images, although it works for `html` files. If I run
```
quarto preview test.qmd --to docx --no-browser --no-watch-inputs
```
on quarto 1.3.75, it pops up an error message:
```
ERROR: Internal error: temporarily disabled unti... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2022-12-31T03:24:03Z",
"creator": "Jiayou-Chao",
"is_pull_request": false,
"labels": [
"mermaid",
"puppeteer"
],
"locked": false,
"milestone": "v1.3",
"number": 3809,
"state": "closed",
"title": "Quarto cannot render mermaid or dot i... |
I'm having an issue including just any SVG in LaTeX output---it complains about not having a bounding box, even with height and width defined. I'm using Quarto 1.2.280 and just barely upgraded TinyTex to v2022.12.12. I'm on Ubuntu 18.04 WSL on Windows 11.
`test.svg`:
```svg
<svg xmlns="http://www.w3.org/2000/svg" widt... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-30T13:39:47Z",
"creator": "kjohnsen",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3804,
"state": "closed",
"title": "SVGs fail in LaTeX output",
"url": "https://github.com/quarto-dev/quarto-cli/is... |
### Bug description
In the latest version (1.3.75), the following line seems to look for `pagebreak.lua`,
https://github.com/quarto-dev/quarto-cli/blob/912a4962cd361fc092a7f52e720c13199fe39131/src/resources/rmd/execute.R#L187
but the filters seem to have been taken out in this [large commit](https://github.com/q... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-12-30T03:42:33Z",
"creator": "justanothergithubber",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3801,
"state": "closed",
"title": "Version 1.3.75 breaks R",
"url": "https://githu... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3775
Currently `page-navigation` can only navigate between pages in a sidebar, but not between pages in a blog or listing. It would be a great improvement if it was possible to use `page-navigation` in these cases too.
This is generally nice fo... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-12-29T20:29:41Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 3795,
"state": "open",
"title": "Support `page-navigation` for blog listings",
... |
I have this in my yaml (website):
```
title: "Something Great"
slug: 'something-great'
```
The webpage is at https://somewhere.com/something-great/
so the html is created from a index.qmd file as expected using "quarto render".
When I go add other filetypes such as pdf, revealjs, and tex, I use the foll... | {
"assignee": null,
"comments": 3,
"created_at": "2022-12-29T20:12:46Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [],
"locked": true,
"milestone": null,
"number": 3802,
"state": "closed",
"title": "Repeated yaml values",
"url": "https://github.com/quarto-dev/quarto-cli/i... |
### Bug description
My render fails (at the XeLaTeX part?) whenever I use a custom font. I'm on Ubuntu 18.04 WSL on Windows 11.
`test.qmd`:
```qmd
---
format:
pdf:
mainfont: Arial
---
# Hello there!
This is a test.
```
So, `quarto render test.qmd --to pdf` fails, unless I stop trying to spec... | {
"assignee": "dragonstyle",
"comments": 7,
"created_at": "2022-12-29T20:11:45Z",
"creator": "kjohnsen",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 3794,
"state": "open",
"title": "LaTeX crash when using custom font",
"url": "https://gi... |
. | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-12-29T19:11:42Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3796,
"state": "closed",
"title": "citation: true",
"url": "https://github.com/quarto-dev/quarto... |
. | {
"assignee": "dragonstyle",
"comments": 14,
"created_at": "2022-12-29T19:07:10Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3797,
"state": "closed",
"title": "Citeproc Warning bibliography: value",
"url": "https://githu... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3784
<div type='discussions-op-text'>
<sup>Originally posted by **edalfon** December 29, 2022</sup>
Hi,
We use [includes](https://quarto.org/docs/authoring/includes.html) to re-use content across documents in a Quarto website project.
I... | {
"assignee": "cwickham",
"comments": 0,
"created_at": "2022-12-29T13:48:39Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"documentation",
"triaged-to",
"includes"
],
"locked": false,
"milestone": "v1.4",
"number": 3788,
"state": "open",
"title": "Better document... |
### Bug description
When using a (home-made) docker image [described here](https://forgemia.inra.fr/jbleger/docker-image-quarto-jax-torch-sphinx/-/blob/4813d874bd42dc6d6d5e33bb28905c443f545ed5/Dockerfile) with quarto and all stuff I need for my computations, I obtain the following error:
```
$ quarto add --no-prom... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-12-29T09:42:18Z",
"creator": "jb-leger",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.4",
"number": 3785,
"state": "open",
"title": "Debian package doesn't declare unzip as dependency",
"url... |
### Bug description
Probably related to #3178, an issue I am also experiencing. But subsections are being ignored in the ToC, even without child documents.
This:
```
---
title: "test"
format: html
editor: visual
toc: true
toc-location: left
toc-depth: 2
---
# heading 1
## david
## mycroft
# h... | {
"assignee": null,
"comments": 3,
"created_at": "2022-12-28T18:05:18Z",
"creator": "daranzolin",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3778,
"state": "closed",
"title": "ToC does not include all subsections",
"url": "https://github.co... |
### Bug description
There is excessive vertical space before definition/theorem/etc environments in latex output.
Reproduce:
```
# Chapter
## Section
### Subsection
#### Subsubsection
Some text before the definition.
::: {#def-def}
Lorem ipsum dolor sit amet, consectetuer adipiscing elit. Ut puru... | {
"assignee": "dragonstyle",
"comments": 12,
"created_at": "2022-12-28T03:23:56Z",
"creator": "fulem",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3776,
"state": "closed",
"title": "Excessive vertical space before definition/theorem/etc enviro... |
. | {
"assignee": null,
"comments": 0,
"created_at": "2022-12-27T23:22:21Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3789,
"state": "closed",
"title": "PDF Links",
"url": "https://github.com/quarto-dev/quarto-cli/issues/3789... |
Hello,
I've been having a really hard time getting Github Actions to render my site. I keep getting this error and wonder if anyone knows how to solve it. I think there is a version issue going on but I don't understand how to fix it
![image](https://user-images.githubusercontent.com/92396451/209726904-8f50b9f1-5... | {
"assignee": null,
"comments": 7,
"created_at": "2022-12-27T22:16:03Z",
"creator": "DOH-FAA3303",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 4005,
"state": "closed",
"title": "`Cannot read properties of undefined (reading ... |
### Bug description
Broken layout when a list is the first child of `.proof`/`.solution`/`.remark` environment.
Reproduce:
```
::: {.proof}
1. First part
2. Second part
:::
::: {.remark}
1. First part
2. Second part
:::
::: {.solution}
1. First part
2. Second part
:::
```
Html render is com... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2022-12-27T19:29:05Z",
"creator": "fulem",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3772,
"state": "closed",
"title": "Broken layout when a list is the first child of .proof/.solution... |
### Bug description
I try to generate a LaTeX table in Julia using PrettyTables.jl
This creates the LaTeX code for the `\begin{tabular} ... \end{tabular}` sections.
1. If I use `#| output: true` that gets inserted in a `verbatim` environment, which prints the LaTeX code in the final document, which is not wha... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-12-27T17:39:39Z",
"creator": "TS-CUBED",
"is_pull_request": false,
"labels": [
"bug",
"crossref",
"tables"
],
"locked": false,
"milestone": "v1.4",
"number": 3770,
"state": "open",
"title": "Code cells with `#| output: asis`... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3763
<div type='discussions-op-text'>
<sup>Originally posted by **ijlyttle** December 26, 2022</sup>
I am working on a PR for pins (rstudio/pins-r#692), and have gotten myself confused about how to use `resources:` in `_quarto.yml`. I don't kn... | {
"assignee": "cscheid",
"comments": 7,
"created_at": "2022-12-27T14:23:33Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.4",
"number": 3766,
"state": "open",
"title": "using `resources:` field in `_quarto.yml`",
"url": "https://gi... |
. | {
"assignee": null,
"comments": 3,
"created_at": "2022-12-26T18:44:16Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3803,
"state": "closed",
"title": "Change the title",
"url": "https://github.com/quarto-dev/quarto-cli/issu... |
### Bug description
The cross reference system is broken inside math mode when we want to do theorem proving by equation chaining.
Reproduce:
```
# Test math and theorem proving
::: {#def-mydef}
This definition says that $A = B$.
:::
$$
B = C
$$ {#eq-myeq}
$$
\begin{align}
A \ &= B &... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-12-26T18:31:33Z",
"creator": "fulem",
"is_pull_request": false,
"labels": [
"duplicate",
"enhancement",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 3764,
"state": "closed",
"title": "Cross references broken... |
repro:
```
# format-variants.qmd
---
format:
pdf+simple:
output-file: simple.pdf
pdf+fancy:
output-file: fancy.pdf
pdf-engine: lualatex
---
This is a test.
```
This will fail with:
```
ERROR: NotFound: No such file or directory (os error 2), open 'format-variants.tex'
NotFound:... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-12-26T14:01:24Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3762,
"state": "closed",
"title": "multiple pdf targets clean up wrongly",
"url": "https://gith... |
Hi,
I seeking help to change the color for the text output form the R code execution. The result I want is the text output to be white color, not the black color
I put the following setting for in the scss, but it not working
// Body
$body-color: $gray-400 !default;
$body-bg: $gray-900 !default;
Thanks very ... | {
"assignee": null,
"comments": 5,
"created_at": "2022-12-25T04:23:17Z",
"creator": "guoruizhong",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": "v1.3",
"number": 3893,
"state": "closed",
"title": "Can not change the text color for the output of R code"... |
### Bug description
When using a computational `{{< include /project/_toolbox.qmd >}}` at the very bottom of each of my projects e.g. [example](https://github.com/cgoo4/quantumjitter/blob/main/project/footnote/index.qmd), all the site search results then used the title of the `_toolbox.qmd` rather than the title in th... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-24T16:55:11Z",
"creator": "cgoo4",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 3751,
"state": "closed",
"title": "`title:` in {{< include _foobar.qmd >}} affects site search results",
"url": "http... |
Hi,
I'm trying to embed a video stored on OneDrive / MS Streams. The video shortcode works fine in a browser on its own:
[https://emckclac-my.sharepoint.com/personal/k1926273_kcl_ac_uk/_layouts/15/embed.aspx?UniqueId=4cff1c09-4be9-45ac-a5ee-50649db2c53a](https://emckclac-my.sharepoint.com/personal/k1926273_kcl_... | {
"assignee": null,
"comments": 0,
"created_at": "2022-12-23T20:04:07Z",
"creator": "plukethep",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 3747,
"state": "open",
"title": "Embedding OneDrive / MS Stream videos not working",
"ur... |
### Bug description
I observe situations where code listings are not visible in the PDF output document.
The `index.qmd` file listing below renders to [index.pdf](https://github.com/quarto-dev/quarto-cli/files/10292396/index.pdf).
The Python code listing is not rendered / included in the PDF.
The behavior s... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2022-12-23T06:17:35Z",
"creator": "mamarder",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3742,
"state": "closed",
"title": "Code listings not visible in PDF output form... |
### Bug description
Quarto uses the terms whitelist and blacklist.
https://github.com/quarto-dev/quarto-cli/blob/85c9e303ece91e77a404e04eeeb2bb4270aecfc7/src/resources/editor/devserver/devserver-core.html#L205
https://github.com/quarto-dev/quarto-cli/blob/5bfd77217530c7a79123e90e3ee840e5300d4d4f/src/vendor/cdn.... | {
"assignee": null,
"comments": 2,
"created_at": "2022-12-23T04:28:55Z",
"creator": "datakid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3741,
"state": "closed",
"title": "Quarto code and options use terms `blacklist` and `whitelist`",
"ur... |
### Bug description
1. Create a new book project
`quarto create-project mybook --type book`
2. Update _quarto.yml to add csl file
`csl: ieee.csl`
3. try to render html and see the error
`quarto render --to html`
4. Error:
```
File C:_o-bug.csl not found in resource path
ERROR: File C:_o-bu... | {
"assignee": null,
"comments": 3,
"created_at": "2022-12-22T23:38:52Z",
"creator": "ati-ozgur",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3740,
"state": "closed",
"title": "html render does not with custom csl file",
"url": "https://githu... |
### Bug description
I recently finished upgrading a server to Posit Workbench 2022.07.2 Build 576.pro12, which bundled Quarto 1.1.189. In case it's relevant, immediately prior, I upgraded the OS in place from Ubuntu 16.04 -> 20.04. When I attempt to test out the Quarto rendering functionality, I get an error.
Step... | {
"assignee": null,
"comments": 12,
"created_at": "2022-12-22T22:17:01Z",
"creator": "msummersgill",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 3739,
"state": "closed",
"title": "QMD Rendering Fails - Error: Is a directory... |
when the video id contains two dashes next to each other: i.e. BbTyu8zE--w
This does not work:
{{< video https://www.youtube.com/embed/BbTyu8zE--w >}}
But this does:
{{< video https://www.youtube.com/embed/BbTyu8zE\-\-w >}}
Just FYI
| {
"assignee": "dragonstyle",
"comments": 8,
"created_at": "2022-12-22T15:27:00Z",
"creator": "directknowledge",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3744,
"state": "closed",
"title": "When using the video shortcut with a YouTube video... |
### Bug description
With the following setup,
`index.qmd`:
```
Example Website
```
`create.sh`:
```
#!/bin/sh
mkdir -p example
echo "hello" > example/hello.qmd
```
`_quarto.yml`:
```
project:
type: website
pre-render: sh create.sh
website:
title: Example Website
sidebar:
title: "... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-12-22T11:19:41Z",
"creator": "georgestagg",
"is_pull_request": false,
"labels": [
"bug",
"project-scripts"
],
"locked": false,
"milestone": "v1.4",
"number": 3737,
"state": "open",
"title": "Website sidebar auto generation f... |
### Bug description
Hi. I'm trying to render some `.qmd` files to the PDF format with Mermaid/Graphviz diagrams inside. It seems that when the diagrams are labeled, `figure` environments in the generated `.tex` file are nested, which is a little weird for me.
Here's a minimal example.
````md
---
title: "Test... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-12-22T10:51:26Z",
"creator": "sun123zxy",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 3736,
"state": "open",
"title": "labeled Mermaid & Graphviz diagrams generate n... |
### Bug description
````
---
title: "Minimal Working Example"
execute:
tidy: true
---
```{r}
#| eval: false
df_ches = read_csv("1999-2014_CHES.csv") %>%
select(country, party, year, galtan) %>%
mutate(
galtan = recode(galtan, "center" = "5", "extreme tan"="10") %>% as.numeric()
)
```
`... | {
"assignee": null,
"comments": 2,
"created_at": "2022-12-22T10:21:11Z",
"creator": "benjaminschlegel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3735,
"state": "closed",
"title": "tidy: true globally",
"url": "https://github.com/quarto-de... |
### Bug description
quarto 1.3.26, Windows, RStudio Desktop. Make sure you reset everything to see the warning, when run multiple times it does not show.
index.qmd (nothing else)
````
```{r}
library(flextable)
head(mtcars)[,1:6] |>
flextable()
```
````
Background job output on build:
```
... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2022-12-22T08:09:41Z",
"creator": "dmenne",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "v1.3",
"number": 3734,
"state": "closed",
"title": "Could not fetch resource site_libs/tabwid-1.... |
This issue is based on the discussion in https://github.com/quarto-dev/quarto-cli/discussions/3717. Just reporting here so it's easier to follow.
It would be nice if Quarto supported ANSI colour output with `downlit`. Currently Quarto uses downlit for code linking when `code-link: true`, but this doesn't make colou... | {
"assignee": "cderv",
"comments": 1,
"created_at": "2022-12-22T01:04:10Z",
"creator": "mccarthy-m-g",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 3730,
"state": "open",
"title": "Support ANSI colour output with `downlit`",
"url"... |
### Bug description
I'm trying to run the [example Deno script code](https://quarto.org/docs/projects/scripts.html#deno-scripts) inside a Quarto project (that does have a `_quarto.yml`).
Here's my script, `snel.ts`:
```ts
import { parse } from "https://deno.land/std/encoding/yaml.ts";
const config = parse(De... | {
"assignee": "cscheid",
"comments": 16,
"created_at": "2022-12-21T00:21:05Z",
"creator": "jimjam-slam",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "v1.3",
"number": 3723,
"state": "closed",
"title": "Can't import std lib module for exampl... |
### Bug description
Hi Quarto-Dev,
I've been kicking the tires on the Confluence publishing feature but I have been unable to push to Confluence due to an `Invalid Confluence parent URL` issue. Is there a regex matcher for Confluence URLs? If so, I'd be happy to try a few pages.
```bash
quarto publish conflue... | {
"assignee": "allenmanning",
"comments": 3,
"created_at": "2022-12-20T15:21:14Z",
"creator": "zachcp",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3720,
"state": "closed",
"title": "ERROR: Invalid Confluence parent URL",
"url": "https://g... |
### Bug description
quarto 1.3.26, Windows
Cross-referencing tables works for html/docx/pdf when I use `knitr::kable`
It fails for docx (only) for `flextable` and `gt`. `flextable` cross-referencing works in `rmarkdown/knitr`
```
WARNING: Unable to resolve crossref @tbl-mtcars
WARNING: Unable to resolve ... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-20T15:11:01Z",
"creator": "dmenne",
"is_pull_request": false,
"labels": [
"bug",
"duplicate"
],
"locked": false,
"milestone": null,
"number": 3719,
"state": "closed",
"title": "Unable to resolve crossref in docx tables (works for ... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3710
<div type='discussions-op-text'>
<sup>Originally posted by **agerlach** December 19, 2022</sup>
When using `fig-cap` with `fig-subcap` I am getting a weird layout for the main caption with pdf output. `fig-cap` is placed fine when `fig-su... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-12-19T15:13:05Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref",
"julia"
],
"locked": false,
"milestone": "v1.4",
"number": 3711,
"state": "open",
"title": "Weird `fig-cap` placement w... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3704
<div type='discussions-op-text'>
<sup>Originally posted by **cgoo4** December 19, 2022</sup>
When `image:` is left unspecified in a `.qmd` YAML header, the first image found is also used for the listing page. This is great as it avoids sp... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-12-19T13:28:49Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3706,
"state": "closed",
"title": "Capture `fig-alt=` from the first image for use in the listing page... |
### Bug description
I'm running quarto 1.2.269 on Windows, using sass files to customize HTML output. It seems that custom theme files for light mode are unexpectedly applied to dark mode.
For example, consider this qmd file:
```md
---
title: Test
format:
html:
theme:
light: [flatly, "custom.... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-19T12:56:39Z",
"creator": "sun123zxy",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 3705,
"state": "open",
"title": "Custom theme sass file for light mode unexpectedly applied to dar... |
### Bug description
I'm running quarto 1.2.269 on the command line of centos 7. My use-case is to use the same R script to generate multiple reports, and I like to avoid self_contained/embed-resources so users can easily access individual plots etc.
```bash
quarto render '01_heatmaps.rmd' -o 'binarised_v0.0.1-... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-19T10:46:16Z",
"creator": "macroscian",
"is_pull_request": false,
"labels": [
"bug",
"duplicate"
],
"locked": false,
"milestone": null,
"number": 3703,
"state": "closed",
"title": "'_files' folder not inheriting from output filena... |
### Bug description
I just pulled the most recent version of `quarto-cli`, and now all `quarto` commands fail.
For instance, `quarto check` gives the following errors:
```
Check file:///Users/j/Documents/GitHub/quarto-cli/src/quarto.ts
error: TS2554 [ERROR]: Expected 1 arguments, but got 0.
proces... | {
"assignee": null,
"comments": 3,
"created_at": "2022-12-17T02:03:05Z",
"creator": "postylem",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3695,
"state": "closed",
"title": "After pulling recent changes, all `quarto` commands fail",
"url": ... |
### Bug description
Given the following Quarto document:
````markdown
---
title: "test"
---
```{r}
w <- reactable::reactable(iris)
htmlwidgets::saveWidget(
widget = w,
file = "test.html",
selfcontained = TRUE
)
htmltools::includeHTML("test.html")
```
````
When this document is rendered ... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-12-16T14:40:21Z",
"creator": "aronatkins",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3688,
"state": "closed",
"title": "Help R code discover Pandoc",
"url": "https://github.com/... |
### Bug description
# Main issue
1. **R location is not recognized** while rendering pdf in **VSCode with R** chunks.
2. It is okay if I run the command `quarto_render("~.qmd")` in R terminal in VSCode
3. it is can be partially rendered in Rstudio, Chinese letters are missing
<img width="391" alt="ζͺε±2022-12-16 21... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-16T13:41:03Z",
"creator": "DerekZ4471",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 3687,
"state": "closed",
"title": "R not located while rendering, Quarto VSCode, macOS Ventura",
"u... |
### Bug description
_No response_
### Checklist
- [x] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [x] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdo... | {
"assignee": "cscheid",
"comments": 5,
"created_at": "2022-12-16T10:22:24Z",
"creator": "giabaio",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3686,
"state": "closed",
"title": "fa shortcode broken in navbar?",
"url": "https://github.com/... |
### Bug description
Steps to reproduce:
1. Render the following file.
````
---
title: "MWE"
format: pptx
---
```{r results="asis"}
library(ggplot2)
print(ggplot(mtcars, aes(x = wt)) + geom_histogram())
```
````
Expected output: A Powerpoint document with a title slide and a histogram on the sec... | {
"assignee": "cderv",
"comments": 8,
"created_at": "2022-12-16T03:01:48Z",
"creator": "Xitian9",
"is_pull_request": false,
"labels": [
"bug",
"windows"
],
"locked": false,
"milestone": "v1.3",
"number": 3683,
"state": "closed",
"title": "ggplot output in \"asis\" R code blocks is not in... |
### Bug description
Any content *before* the first Markdown header in a chapter is moved *past* this header when rendered.
## Minimal reproducible example:
1. Create a [new book project](https://quarto.org/docs/books/index.html#quick-start):
```sh
quarto create-project mybook --type book
```
2. ... | {
"assignee": null,
"comments": 6,
"created_at": "2022-12-15T20:00:37Z",
"creator": "salim-b",
"is_pull_request": false,
"labels": [
"bug",
"wontfix"
],
"locked": false,
"milestone": null,
"number": 3681,
"state": "closed",
"title": "Content *before* first MD header in chapter is moved *... |
### Bug description
Rendering a dygraph htmlwidget on quarto document, shows an unexpected scrollbar on right side (and sometimes on bottom part too). It causes impossible to hover over last data point.
It happens on RStudio's Viewer Pane or with web-browsers like Firefox, Chrome or MS-Edge. Not allways with other ... | {
"assignee": null,
"comments": 1,
"created_at": "2022-12-15T16:43:17Z",
"creator": "archymedes",
"is_pull_request": false,
"labels": [
"bug",
"duplicate"
],
"locked": false,
"milestone": null,
"number": 3680,
"state": "closed",
"title": "dygraph htmlwidget show unexpected scrollbar",
... |
### Bug description
Using 1.2.269 on `linux`, `bioconductor_docker`.
`cat /etc/os-release`:
NAME="Ubuntu"
VERSION="20.04.4 LTS (Focal Fossa)"
...
Includes:
RStudio 2022.07.1+554 "Spotted Wakerobin" Release (7872775ebddc40635780ca1ed238934c3345c5de, 2022-07-22) for Ubuntu Bionic
Mozill... | {
"assignee": "jjallaire",
"comments": 6,
"created_at": "2022-12-14T18:05:47Z",
"creator": "r-cheologist",
"is_pull_request": false,
"labels": [
"bug",
"documentation"
],
"locked": false,
"milestone": "v1.4",
"number": 3673,
"state": "open",
"title": "PDF: Erroneous interaction between p... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3668
<div type='discussions-op-text'>
<sup>Originally posted by **acmuehlhausen-smc** December 14, 2022</sup>
Hey there,
I've got a small but annoying problem designing a reveal.js-presentation in Quarto: when I have slides with no title (e... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-12-14T16:25:53Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"revealjs"
],
"locked": false,
"milestone": "v1.4",
"number": 3671,
"state": "open",
"title": "reveal.js presentation: Slides with no t... |
Rendering a dygraph htmlwidget on quarto document, shows an unexpected scrollbar on right side (and sometimes on bottom part too). It causes impossible to hover over last data point.
It happens on RStudio's Viewer Pane or with web-browsers like Firefox, Chrome or MS-Edge. Not allways with other web-browsers like Falko... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2022-12-14T16:02:52Z",
"creator": "archymedes",
"is_pull_request": false,
"labels": [
"bug",
"html"
],
"locked": false,
"milestone": "v1.4",
"number": 3894,
"state": "open",
"title": "dygraph htmlwidget show unexpected scrollbar",
... |
### Bug description
Consider this external file named `mermaid1.mer`:
```
flowchart LR
A
```
When running `Quarto` 1.3.55 on the following script I get `Syntax error in graph, mermaid version 9.1.1`:
````
---
title: "Test"
format:
html:
self-contained: true
---
```{mermaid}
%%| file: merm... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-12-13T22:53:23Z",
"creator": "harrelfe",
"is_pull_request": false,
"labels": [
"bug",
"mermaid"
],
"locked": false,
"milestone": "v1.3",
"number": 3665,
"state": "closed",
"title": "Inputting an external mermaid file throws a sy... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/3658
<div type='discussions-op-text'>
<sup>Originally posted by **GScottAlder** December 13, 2022</sup>
NOTE:
I am using the quarto R package version 1.0 and quarto version 0.9.80
I found the version by running this code: `as.numeric_version... | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2022-12-13T21:50:37Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.4",
"number": 3663,
"state": "open",
"title": "params should work with `metadata-files`",
"url": "https://git... |
Works fine on `ubuntu-latest` just not on `macOS-latest`
Here is the GitHub Action
```
on:
push:
branches: main
name: Setup
jobs:
build-deploy:
runs-on: macOS-latest
steps:
- name: Check out repository
uses: actions/checkout@v3
- name: Set up Quarto
... | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2022-12-13T21:49:10Z",
"creator": "eeholmes",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 3670,
"state": "closed",
"title": "setup.yml: tinytex not installing on macOS-latest",
"url": "https://gith... |
### Bug description
The following example documents the problem. No figure caption or figure number appears unless the first chunk is removed. I'm using Quarto 1.3.55 on Ubuntu 22 and running `quarto render test.qmd`.
````
---
title: "Test"
format:
html:
self-contained: true
---
```{r}
x <- 3
`... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-12-13T18:31:50Z",
"creator": "harrelfe",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 3660,
"state": "closed",
"title": "graphviz dot cell ignores figure caption and ... |
### Bug description
When rendering book project to pdf, the first sub heading in a chapter is ignored. However, the second subheading is rendered and included in the final pdf file.
The minimal example consists of the following two files.
The `_quarto.qml` file:
```
project:
type: book
book:
title: Test... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-12-13T14:37:03Z",
"creator": "jensschroer",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3653,
"state": "closed",
"title": "Book / PDF output: First subheading in a chapter is mi... |
### Bug description
With quarto 1.3.49 on macOS 11.6, a simple test document with a theorem (https://stackoverflow.com/q/74780867/2777074)
```
---
title: "Untitled"
format: beamer
editor: visual
---
## Quarto
Quarto enables you to weave together content and executable code into a finished presentation... | {
"assignee": "dragonstyle",
"comments": 6,
"created_at": "2022-12-13T12:54:41Z",
"creator": "samcarter",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 3650,
"state": "open",
"title": "Beamer and theorems",
"url": "https://gi... |
### Bug description
π this is pretty minor to be sure but I also had to narrow down the issue for my own purposes so I thought I would report.
Version of quarto tested on: `v1.0.38`, `v1.2.269` and HEAD here: https://github.com/quarto-dev/quarto-cli/commit/46ce2673bc3a5ce74051c7bc5a4a9c3678e25e7a
I can reprod... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-12-12T21:24:03Z",
"creator": "boshek",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 3645,
"state": "closed",
"title": "plotly modebar isn't obscured with link-external-icon: true... |
# Bug description
With @rlesur we wanted to play with `duckdb` embarked implementation in `observable` notebooks (feature released in Novembre: https://observablehq.com/@observablehq/duckdb)
We tried using CSV and parquet files stored on local file systems. With CSV, everything works fine when using `FileAttachme... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-12-12T10:06:51Z",
"creator": "linogaliana",
"is_pull_request": false,
"labels": [
"bug",
"ojs-engine"
],
"locked": false,
"milestone": "v1.3",
"number": 3630,
"state": "closed",
"title": "Read parquet files from local filesystem... |
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