page_content stringlengths 0 46.9k | metadata dict |
|---|---|
I often find myself emailing Rmarkdown reports rendered in HTML to collaborators. I recently tried this with an HTML file rendered from a Quarto document. It renders correctly but after I email the document all the plots do not display and instead are replaced by an icon of a broken image.
This has happened with Qu... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-10T15:45:01Z",
"creator": "mzobeck",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1877,
"state": "closed",
"title": "plots break when i email Quarto html files",
"url": "https://github.com/quarto-d... |
We should audit our schemas and code for places where we expect an image, and replace what's currently a `string` with a
```yaml
- name: image
schema:
anyOf:
- string
- object:
properties:
src: path
alt: string
required:
- src
```
... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-08-10T14:53:13Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"yaml-validation"
],
"locked": false,
"milestone": "v1.4",
"number": 1794,
"state": "open",
"title": "Use \"image\" schema",
"url": "https://github.com/... |
### Bug description
I've just started using quarto and decided to convert an old `LaTeX` book into a new quarto document and have started the process of learning and translating. I'm come across what I think is strange behaviour for the html output.
I have a series of figures that were compiled from `tikz` documen... | {
"assignee": null,
"comments": 5,
"created_at": "2022-08-10T14:12:20Z",
"creator": "jpmorr",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1791,
"state": "closed",
"title": "Add PDF as image leads to unexpected html output in quarto book",
"u... |
### Bug description
`mainfont`, `monofont`, `fontsize`, `linestretch`, and `monobackgroundcolor` are listed as [YAML header options](https://quarto.org/docs/reference/formats/presentations/revealjs.html) for Revealjs presentations, but they are ignored when the presentation is rendered - only shows the defaults for th... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-10T13:59:00Z",
"creator": "ryanraaum",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1790,
"state": "open",
"title": "YAML font options ignored for revealjs presentations",
... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1780
<div type='discussions-op-text'>
<sup>Originally posted by **chrizz89** August 10, 2022</sup>
I am considering transitioning from latex to quarto for my current project. One thing I have not been able to get going is **making use of the l... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-08-10T11:43:28Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 1782,
"state": "closed",
"title": "how to tweak quarto render process to be compatible w/ latex glossari... |
### Bug description
Syntax to insert display style math equations in Quarto documents does not follow conventions explained in the [math section of Pandoc user manual](https://pandoc.org/MANUAL.html#math).
This issue does not affect inline math expressions and it is probably related to issue report #1181, currentl... | {
"assignee": "cscheid",
"comments": 5,
"created_at": "2022-08-10T10:08:17Z",
"creator": "glimmerphoenix",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1781,
"state": "closed",
"title": "Display style math syntax not compliant with Pandoc doc... |
# User story
As a researcher, I want to have an integration with academic writing platform so that I can collaborate with researchers not using Quarto.
## Academic writing platform
One of the academic writing platform I wish to suggest is Sciflow. They are open source, the document are XML-based and interopera... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-10T07:18:01Z",
"creator": "lamurian",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1777,
"state": "open",
"title": "Integrating the reporting workflow with collaborative acad... |
### Bug description
hello,
In office, I have an rdp windows server.
when I open a quarto web project on the local server everything is fine but when I try to open a quarto web project
on another hard drive where data should be stored RStudio fails to create the .yml, .qmd and .css files. only the .Rproj file
is ... | {
"assignee": "cderv",
"comments": 2,
"created_at": "2022-08-09T23:06:38Z",
"creator": "eviatargu",
"is_pull_request": false,
"labels": [
"bug",
"windows",
"file-systems"
],
"locked": false,
"milestone": "v1.4",
"number": 1774,
"state": "open",
"title": "open a quarto web project on ... |
The customizing numbering seems not to work. See more detailed discussion in Q&A #1748 below.
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1748
<div type='discussions-op-text'>
<sup>Originally posted by **sammo3182** August 9, 2022</sup>
I was excited about the [custom setting of re... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-09T22:03:42Z",
"creator": "sammo3182",
"is_pull_request": false,
"labels": [
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1771,
"state": "open",
"title": "Custom Section Numbering Not Functioning",
"url": "http... |
### Bug description
I am trying to render a Rmd file that has a long name:
`2020-12-16-dynamic-time-warping-and-hierarchical-clustering-with-gapminder`
But I get this error:
`Error running filter C:/Users/<user-name>/AppData/Local/Programs/Quarto/share/filters/crossref/crossref.lua:
...ocal/Programs/Quar... | {
"assignee": "jjallaire",
"comments": 12,
"created_at": "2022-08-09T21:59:59Z",
"creator": "durraniu",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1770,
"state": "closed",
"title": "Error running filter crossref.lua",
"url": "https://gith... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1766
<div type='discussions-op-text'>
<sup>Originally posted by **ialbert** August 9, 2022</sup>
The `include` tag seems to work only when preceded by whitespace. Example code:
```
Including on a new line works:
{{< include _date.md >}}
... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-09T19:05:36Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1767,
"state": "open",
"title": "typescript shortcodes need to be in a line by themselv... |
I am using Mac OS Monterey Version 12.5, the latest versions of R (4.2.1), R Studio (2022/07, 1-554), and Quarto (1.0.38), and the `rmarkdown` package (2.14). When attempting to render Quarto (the given `hello.qmd` file), I see the following error:
```
Error in assignInNamespace("htmlPreserve", htmlPreserve, ns = "... | {
"assignee": null,
"comments": 4,
"created_at": "2022-08-09T17:22:38Z",
"creator": "EOneita",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1765,
"state": "closed",
"title": "unable to find R installation",
"url": "https://github.com/quarto-dev/quarto-cli... |
### Bug description
I can't reproduce an example in the Quarto [documentation](https://quarto.org/docs/interactive/layout.html). The example shows how to change the layout of input filters so that the filters are next to each other. When I try to reproduce this, the inputs are below each other. I am on Windows and ... | {
"assignee": null,
"comments": 12,
"created_at": "2022-08-09T15:59:18Z",
"creator": "novotny1akub",
"is_pull_request": false,
"labels": [
"bug",
"windows"
],
"locked": false,
"milestone": null,
"number": 1764,
"state": "closed",
"title": "Can't reproduce Quarto documentation: Component ... |
## Problem
Compiling .qmd docs from Windows PowerShell works fine. But while trying to compile from Rstudio it fails.
## Reprex
The test file I'm using comes from the official quarto website: https://quarto.org/docs/get-started/hello/rstudio/_hello.qmd
## Tried attempts
### Powershell
Running `qua... | {
"assignee": "cderv",
"comments": 11,
"created_at": "2022-08-09T14:19:59Z",
"creator": "pokyah",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 1760,
"state": "closed",
"title": "Quarto-cli called from Rstudio throws 'CreateProcess' failed to run",
"url"... |
### Bug description
I would like to suggest en #enhancement that I believe would be beneficial for the Users.
The problem is that when author cross references to different part of the document (i.e. equation from different chapter) user is moved back and forth. How about in html format one could hover over the refe... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-09T12:55:06Z",
"creator": "Belyor",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1757,
"state": "open",
"title": "Hover over eq reference",
"url": "https://github.com/quart... |
### Bug description
System: Windows10
`_quarto.yml`:
```
project:
type: book
output-dir: docs
book:
title: "My Title"
author: "My Author"
chapters:
- index.qmd
format:
html:
theme: cosmo
code-link: true
include-before-body:
\usepackage{mathtools, simpler-w... | {
"assignee": null,
"comments": 7,
"created_at": "2022-08-09T11:08:47Z",
"creator": "Belyor",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1754,
"state": "closed",
"title": "Wick's contractions ",
"url": "https://github.com/quarto-dev/quarto-cli/issues/17... |
I seem to have a slight issue using a quarto template I have created. I followed the instructions [here](https://quarto.org/docs/extensions/formats.html), but when I pull the template from the GitHub repo I have made, using
```
quarto use template giabaio/my-repo
```
quarto creates a `giabaio` folder under `_extens... | {
"assignee": null,
"comments": 5,
"created_at": "2022-08-09T10:54:58Z",
"creator": "giabaio",
"is_pull_request": false,
"labels": [
"verify-fixed"
],
"locked": false,
"milestone": "v1.1",
"number": 1753,
"state": "closed",
"title": "Issue with using quarto template ",
"url": "https://gith... |
**Background**
The [listings](https://quarto.org/docs/websites/website-listings.html) feature allows one to automatically populate the contents of a page. I expect it was intended for use only in websites, for example an overview of blogposts.
**My Modification**
I used the meta-data of chapters (`title`, `meta-de... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-09T10:17:32Z",
"creator": "SHogenboom",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 1752,
"state": "open",
"title": "Feature Request: (Table) Listings for PDF",
"url": "https://github.com/quar... |
The penguins example in the [OJS](https://quarto.org/docs/interactive/ojs/) and [standalone example](https://quarto.org/docs/interactive/ojs/examples/penguins.html) uses a version of the `palmerpenguins` dataset that varies from the R package itself, namely, removing the units from the col names.
```
names(palmerpe... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-08T20:23:31Z",
"creator": "jthomasmock",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 1878,
"state": "closed",
"title": "`penguins` example for OJS uses a modified version of the palmer-penguins.cs... |
How do I set position of slide numbers or logo? Seems like when you remove the logo from the yaml header, the slide numbering goes to bottom right from top right. How do I put it at the top right without using the logo? | {
"assignee": "cderv",
"comments": 3,
"created_at": "2022-08-08T19:33:25Z",
"creator": "ghost",
"is_pull_request": false,
"labels": [
"enhancement",
"revealjs"
],
"locked": false,
"milestone": "v1.4",
"number": 1879,
"state": "open",
"title": "Slide number, logo positioning",
"url": "h... |
### Bug description
After installing `quarto-1.0.38-win.msi` (Windows 10), I get an error when I try to run quarto cli:
```
'"C:\Users\{username}\AppData\Local\Programs\Quarto\bin\\tools\deno"' is not recognized as an internal or external command,
operable program or batch file.
```
Contents of the folder where... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-08T15:45:37Z",
"creator": "lukesdm",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1739,
"state": "closed",
"title": "'\"C:\\Users\\{username}\\AppData\\Local\\Programs\\Quarto\\bin\\\\to... |
### Bug description
The space between the entity type ("Figure", "Table",...) and its number in the entity label should be a non breaking space instead of a plain space, like in the cross reference link.
---
format: html
---
See @fig-test
```{r}
#| label: fig-test
#|... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-08T15:33:03Z",
"creator": "dicorynia",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1738,
"state": "closed",
"title": "Add non breaking space in caption label",
"url": "https:... |
Like this:
https://github.com/quarto-dev/quarto-cli/commit/c8b34b2166efb328434fe8655d75f804872f2a40 | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-08T13:51:23Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1732,
"state": "closed",
"title": "Terminal Progress Bar should be compact when running in CI",
"url... |
{
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-08T11:06:39Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1731,
"state": "closed",
"title": "publish: auth error during slugAvailable not handled",
"url": "https:... | |
### Bug description
Consider the following minimal working example:
`_quarto.yml`:
```
project:
type: book
book:
title: "Minimal Working Example"
author: "Raniere Silva"
date: "08/08/2022"
chapters:
- index.qmd
always_allow_html: true
format:
html:
theme: cosmo
docx:
... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-08T04:09:06Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1729,
"state": "closed",
"title": "Propagate 'always_allow_html: true' from _quarto.yml to the .Rmd",
... |
### Bug description
Hi! Why the following code does not return the output expected ? Is there a way to set the whole document to return the same print from R code?
``````md
---
title: "Accessing variable from code chunk"
format:
pdf:
toc: false
number-sections: false
---
# Behavior
```{r}
x... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-07T22:59:37Z",
"creator": "Gabrielforest",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1725,
"state": "closed",
"title": "Accessing variable from code chunk",
"url": "https://github.c... |
### Bug description
I tried to switch to the new quarto-publish GitHub Actions workflow for my blog and was hit with this
```
ERROR: No previous publishes available to re-publish (previous publish required with --no-prompt)
```
https://github.com/DavisVaughan/blog/runs/7715534347?check_suite_focus=true
I ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-07T20:39:58Z",
"creator": "DavisVaughan",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1724,
"state": "closed",
"title": "Improve error message when you need to run `quarto publish netli... |
### Bug description
Hi! This was interesting issue to pin down: rendering plain .qmd with special characters (the letter **š** to be precise) to .html works on my machine but fails to render them when there's an r code chunk inside the file. My .qmd file contains special characters and the file was saved as UTF-8.
... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-07T20:22:51Z",
"creator": "Alaburda",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1723,
"state": "closed",
"title": ".qmd stops rendering at special characters if there is an r code c... |
{
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-07T15:18:19Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1722,
"state": "closed",
"title": "add code-block filename as a built-in feature",
"url": "https://githu... | |
{
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-07T15:17:47Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1721,
"state": "closed",
"title": "add sticky tabs as a built in feature",
"url": "https://github.com/qu... | |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1690
<div type='discussions-op-text'>
<sup>Originally posted by **schochastics** August 4, 2022</sup>
Hi there,
What would be the best way (if there is any) to include a button on a rendered ipynb which opens the notebook on google colab (... | {
"assignee": "jjallaire",
"comments": 3,
"created_at": "2022-08-07T13:40:58Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 1718,
"state": "open",
"title": "Button to open rendered ipynb in google colab",
"url": "https://githu... |
### Bug description
_No response_
### `quarto check` Output
_No response_
### `quarto tools check` Output
_No response_
### Checklist
- [ ] [formatted your issue](https://yihui.org/issue/#please-format-your-issue-correctly) so it is easier for us to read?
- [ ] included a minimal, fully reproducible example in a... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-07T13:18:33Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1717,
"state": "closed",
"title": "don't use spinner in terminal when running on ci",
"url"... |
### Bug description
Consider the following minimal working example:
`_quarto.yml`:
```
project:
type: book
book:
title: "Minimal Working Example"
doi: "reserved/identifier"
author: "Raniere Silva"
date: "07/08/2022"
chapters:
- index.qmd
bibliography: references.bib
format:
h... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-07T08:57:26Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1714,
"state": "closed",
"title": "Show DOI for book",
"url": "https://github.com/quarto-de... |
Not so much an issue for my personal use, but my organization has disabled `.cmd` files except with admin permissions.
PowerShell, on the other hand, is allowed and would facilitate adoption much more readily | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-06T18:48:13Z",
"creator": "cooknl",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 1880,
"state": "closed",
"title": "Why .cmd? Please port to PowerShell",
"url": "https://github.com/quarto-dev/qua... |
There is a problem on: [quarto-web / docs / presentations / revealjs / index.qmd
](https://quarto.org/docs/presentations/revealjs/#line-highlighting)
The code block below:
>You can use this same option within an executable code cell by using the code-line-numbers cell options:
shows/says `#echo: fenced`. So... | {
"assignee": "cderv",
"comments": 1,
"created_at": "2022-08-06T17:10:15Z",
"creator": "RaymondBalise",
"is_pull_request": false,
"labels": [
"bug",
"documentation"
],
"locked": false,
"milestone": "v1.3",
"number": 1881,
"state": "closed",
"title": "Code and output do not match in the f... |
### Bug description
Installing quarto preview to test out a possible bugfix for issue #1320
It seems like a unix path, but I'm on Windows.
Git blame suggests https://github.com/quarto-dev/quarto-cli/commit/53e730e267e418a30c69a779fb735235d74740fd#diff-5918f8cb78f1ee5f520dadb760486aa0776451a52675a0f239c1829ff498... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-06T16:47:14Z",
"creator": "burgerga",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1713,
"state": "closed",
"title": "ERROR: NotFound: The system cannot find the path specified. (... |
Quarto version: I tried a few version. Started with 1.0.37 then I updated to the latest dev version (says 99.9.9) using this
```
git clone https://github.com/quarto-dev/quarto-cli
cd quarto-cli
./configure-macos.sh
```
Then went back to v1.0.38 by re-installing.
RStudio: 2022.02.2
OS: Mac Big Sur 11.6.2
Thi... | {
"assignee": "cscheid",
"comments": 6,
"created_at": "2022-08-06T14:36:36Z",
"creator": "eeholmes",
"is_pull_request": false,
"labels": [
"enhancement",
"books"
],
"locked": false,
"milestone": "v1.4",
"number": 1712,
"state": "open",
"title": "Quarto book: multiple chapters in one qmd ... |
### Bug description
`fig-cap` is not showing at the right place when `fig-subcap` option is set in OJS.
A qmd fie containing a minimal example is here:
[ojs-cap.zip](https://github.com/quarto-dev/quarto-cli/files/9275162/ojs-cap.zip)
RStudio: 2022.11.0-daily+82
OS: Linux 5.15.0-43-generic Ubuntu 22.04
### `... | {
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"creator": "sushovan4",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1711,
"state": "closed",
"title": "Fig Sub-captions Not Functional in OJS",
"url": "https://g... |
### Bug description
Tables with markdown or html have to have `escape = FALSE` to not show the markdown or html verbatim when displaying in a table with kable().
- If you you display the table with `knitr::kable()`, both types of links display correctly as links
- If you use `kableExtra::kable()`, the markdown ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-06T12:56:33Z",
"creator": "debruine",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1710,
"state": "open",
"title": "kableExtra tables not processing markdown",
"url": "https://gith... |
Hey everyone,
Has there been discussion about adding some sort of SI unit formatting to quartio, similar to what `siunitx` allows for LaTeX?
This sort of thing is quite helpful when working with derived SI units, or prefixes that aren't found on latin keyboards. `siunitx` ([documentation here](https://texdoc.org/... | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-06T05:55:23Z",
"creator": "tgross35",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1708,
"state": "open",
"title": "Suggestion: Add builtin support for SI unit formatting",
... |
### Bug description
Consider the following minimal working example:
`_quarto.yml`:
```
project:
type: book
book:
title: "Minimal Working Example"
author: "Raniere"
date: "06/08/2022"
chapters:
- index.qmd
format:
html:
theme: cosmo
```
`index.qmd`:
```
# Preface {.unn... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-06T00:18:32Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1707,
"state": "open",
"title": "Use dash (-) with group cross references",
"ur... |
### Bug description
Consider the following minimal working example:
`_quarto.yml`:
```
project:
type: book
book:
title: "Minimal Working Example"
author: "Raniere"
date: "06/08/2022"
chapters:
- index.qmd
format:
html:
theme: cosmo
```
`index.qmd`:
```
# Preface {.unn... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-06T00:16:39Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1706,
"state": "open",
"title": "Use \"and\" before last reference in group cross... |
### Bug description
Consider the following minimal working example:
`_quarto.yml`:
```
project:
type: book
book:
title: "Minimal Working Example"
author: "Raniere"
date: "06/08/2022"
chapters:
- index.qmd
appendices:
- supplement.qmd
format:
html:
theme: cosmo
```
... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-06T00:09:26Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1705,
"state": "closed",
"title": "When cross-referencing Appendix, use \"Appendix X\" instead ... |
### Bug description
When setting the `site` parameter in `website.twitter-card` in `_quarto.yml`, the @username isn't stripped out and causes a pandoc warning when rendering the site:
``` yaml
website:
twitter-card:
creator: "@creatorname"
site: "@sitename"
```
```
[WARNING] Citeproc: citation si... | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-05T19:54:14Z",
"creator": "andrewheiss",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1702,
"state": "closed",
"title": "Citeproc warning when using twitter-card.site",
"url... |
I have a test extension ([tarleb/test-extension](https://github.com/tarleb/test-extension)) that tries to keep a file outside of the `_extensions` folder. I'd like to use a symlink to make that file part of the extension. However, `quarto install extension tarleb/test-extension` copies the symlink, which will usually ... | {
"assignee": null,
"comments": 7,
"created_at": "2022-08-05T18:46:56Z",
"creator": "tarleb",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1700,
"state": "closed",
"title": "Resolve symlinks when installing an extension.",
"url": "https://github.com/quart... |
### Bug description
The `layout-ncol` option for rendering a multi-column layout is not functional inside ojs code chucks. Despite having set the option `layout-ncol: 2`, the produced plots are stacked vertically.
A qmd fie containing a minimal example is here:
[ojs-plots.zip](https://github.com/quarto-dev/quart... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-05T15:56:47Z",
"creator": "sushovan4",
"is_pull_request": false,
"labels": [
"bug",
"ojs-engine"
],
"locked": false,
"milestone": null,
"number": 1698,
"state": "closed",
"title": "Multi-column layout not supported for OJS",
... |
I'd like to suggest a first-class glossary in quarto, where you can link terms in the text to definitions (perhaps displayed on hover) and collect defined terms into an optional glossary table or section at the end of a chapter or the end of a book.
See this [twitter thread](https://twitter.com/LisaDeBruine/status/1... | {
"assignee": "cscheid",
"comments": 8,
"created_at": "2022-08-05T14:38:00Z",
"creator": "debruine",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1697,
"state": "open",
"title": "Feature request: Glossary",
"url": "h... |
First of all, thank you for this amazing tool!
***
One of the best features of Julia are the super easy project-specific environments, which are captured in the file `Project.toml`. These are meant to be independent of IJulia kernels (unlike conda+python).
What is the default behaviour of Quarto when a `.qmd` fil... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-05T12:15:34Z",
"creator": "svilupp",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1696,
"state": "closed",
"title": "Question: How are Julia environments handled? How to render with a project-specifi... |
When index.qmd contains an r code chunk, rendering to epub creates an invalid epub file, that also can't opened as a zip file.
Example to reproduce this problem:
Create a Quarto Book from RStudio. When you specify Knitr as engine then the generated files index.qmd, intro.qmd and summary.qmd contain a simple r chu... | {
"assignee": "jjallaire",
"comments": 2,
"created_at": "2022-08-05T09:36:40Z",
"creator": "bwelman",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1695,
"state": "closed",
"title": "Invalid epub created when index.qmd contains r code chunk",
"url": "htt... |
Pandoc v2.19 is out: https://github.com/jgm/pandoc/releases/tag/2.19 | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-05T05:37:35Z",
"creator": "benz0li",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1692,
"state": "closed",
"title": "Enhancement: Update pandoc version",
"url": "https://github.com/quarto-... |
If the .qmd file is stored in a the "script" subdirectory and the .yml file specifies `output-dir: output` the resulting files will be rendered into a new script directory nested within the output directory.
I thought specifying `execute-dir: project` would avoid this issue, but it does not.
Please see below for... | {
"assignee": null,
"comments": 3,
"created_at": "2022-08-05T00:20:16Z",
"creator": "Rory-OG",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1691,
"state": "closed",
"title": "output-dir: output stores files in a new script directory while rendering if .qmd ... |
### Bug description
I am running quarto via `quarto preview` on the blog containing the jupyter notebooks in environment
```bash
$ cat /etc/os-release
NAME="Ubuntu"
VERSION="21.04 (Hirsute Hippo)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 21.04"
```
The issue is following:
Plotly figures are sometim... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-04T21:04:33Z",
"creator": "grepinsight",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1689,
"state": "closed",
"title": "some plotly figures are not rendered (unpredictably)",
... |
### Bug description
## Unexpected Behaviour in Date Processing
This date format:
```
---
date: 04 08 2022
date-format: "Do MMMM YYYY"
lang: en-GB
---
```
correctly produces `4th August 2022` however other entry formats use American date interpretations.
According to the documentation [dates](https://... | {
"assignee": "dragonstyle",
"comments": 8,
"created_at": "2022-08-04T20:10:27Z",
"creator": "a2k42",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1688,
"state": "closed",
"title": "Unexpected Behaviour in Locale Date Processing",
"url": ... |
(Something's happening with our version of `require`.)
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1682
<div type='discussions-op-text'>
<sup>Originally posted by **stuvjordan-uroc** August 4, 2022</sup>
I'm wanting to include some Observable charts in a website I'm building with Qu... | {
"assignee": "cscheid",
"comments": 11,
"created_at": "2022-08-04T17:05:43Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"ojs-engine"
],
"locked": false,
"milestone": null,
"number": 1685,
"state": "closed",
"title": "require-ing MathJax fully working in Observerable notebo... |
(This is less important now, but will become more important as quarto development settles.)
There should be a way for extensions to declare the minimum required quarto version in their yaml, and for quarto to check against that. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2022-08-04T14:53:03Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.1",
"number": 1681,
"state": "closed",
"title": "Extensions should be able to declare quarto versio... |
Github did not allow me to post the full issue so I will do it in pieces.
Issue #1660 led me to look for a way to include uncited works in a book bibliography, which I am doing by including a text file with the relevant bibtex keys in the #refs div. (A seemingly equivalent approach is to cite those works in a .hidde... | {
"assignee": "jjallaire",
"comments": 9,
"created_at": "2022-08-04T11:38:24Z",
"creator": "donboyd5",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1678,
"state": "closed",
"title": "Citations not properly synchronized with bibliography in certain cases - v... |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1674
<div type='discussions-op-text'>
<sup>Originally posted by **RaymondBalise** August 4, 2022</sup>
When I do `quarto install tool tinytex` I get a message saying:
```bash
(\) Updating Path (inspecting 1 possible paths)WARNING: Unable ... | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2022-08-04T11:38:22Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.2",
"number": 1677,
"state": "closed",
"title": "Improve Quarto Tools Docs",
"url": "https:... |
Issue #1660 led me to look for a way to include uncited works in a book bibliography, which I am doing by including a text file with the relevant bibtex keys in the #refs div. (A seemingly equivalent approach is to cite those works in a .hidden div.) However, that led to a problem in which citations and the bibliograph... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-04T11:10:56Z",
"creator": "donboyd5",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1675,
"state": "closed",
"title": "Citations not properly synchronized with bibliography in certain cases",
... |
### Bug description
I am currently trying to explore using Quarto for the Python work I am doing in VSCode, where I had traditionally been using VSCode's version of the Jupyter Notebook (.ipynb).
When I took my notebook, and put in the appropriate YAML raw header cell, everything rendered correctly into HTML -- it ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-04T02:59:33Z",
"creator": "AlanFeder",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1673,
"state": "closed",
"title": "Issue with Quarto/Python/VSCode/.qmd referencing wrong conda enviro... |
Hi!
Trying out quarto today and got the error in the title upon rendering the example document.
Particularly, the error arises on copying 'quarto.js' from the installation path to the document '*_files' directory.
I'm running the quarto version 1.0.37 on Linux Mint 20.3 (which is based on Ubuntu 20.*). My Rstud... | {
"assignee": "dragonstyle",
"comments": 9,
"created_at": "2022-08-04T00:44:39Z",
"creator": "emilianomm",
"is_pull_request": false,
"labels": [
"file-systems"
],
"locked": false,
"milestone": "v1.4",
"number": 1672,
"state": "open",
"title": "ERROR: PermissionDenied: Operation not permitted... |
(Apologies for the blank initial post, not getting a raw markdown-based template confused the heck out of me!)
### Bug description
When attempting to render scripts involving arrow S3 operations, quarto fails part way through with this error.
```r
download.file("https://github.com/cboettig/forecasts-darts... | {
"assignee": null,
"comments": 11,
"created_at": "2022-08-03T20:41:48Z",
"creator": "cboettig",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1667,
"state": "closed",
"title": "quarto erroneously halts with error: Error: ignoring SIGPIPE signal... |
# What?
I'd like Quarto to create _all_ temporary/intermediate files in the given subdirectory of the project root (or `/tmp`, or another user-provided directory). By "intermediate files" I mean all files that Quarto manages itself: `.aux`, `.tex`, `.log`, the intermediate `.pdf`, the `.md` generated from the `.qmd`... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-03T19:16:38Z",
"creator": "ForceBru",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 1666,
"state": "open",
"title": "[Feature request] Can Quarto please create_all_ temporary files _not_ in the sa... |
### Bug description
It seems "Published document" shows a wrong URL (quartopub\.org doesn't exist).
```
$ /c//Users/Yutani/AppData/Local/Programs/Quarto/bin/quarto.cmd publish quarto-pub ./quarto_test.qmd
...snip...
[>] Preparing to publish document
[>] Uploading files (complete)
[>] Deploying published do... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-03T14:02:43Z",
"creator": "yutannihilation",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1662,
"state": "closed",
"title": "The result of \"quarto publish quarto-pub\" shows a wrong U... |
Hi,
First, thanks so much for making this wonderful tool. I've been an active RMarkdown user, while also working heavily with a VS Code and Python. I'm very excited to see there's a RMarkdown equivalent outside R ecosystem, finally.
I intend to use Quarto with only Python and VS Code on macOS. After using [homebr... | {
"assignee": "dragonstyle",
"comments": 6,
"created_at": "2022-08-03T13:47:28Z",
"creator": "iewaij",
"is_pull_request": false,
"labels": [
"bug",
"installers"
],
"locked": false,
"milestone": "v1.4",
"number": 1661,
"state": "open",
"title": "Improve MacOS Installer Path Handling",
"... |
I would like a bibliography that includes many works that may not be referenced specifically. I am using quarto 1.0.37 for Windows, with the latest Wakerobin build of RStudio.
The [quarto documentation](https://quarto.org/docs/authoring/footnotes-and-citations.html) appears to say I can do this by creating a "dummy ... | {
"assignee": "jjallaire",
"comments": 8,
"created_at": "2022-08-03T12:33:52Z",
"creator": "donboyd5",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.1",
"number": 1660,
"state": "closed",
"title": "cannot get nocite to work",
"url": "https://github.com/quarto-dev/quar... |
### Bug description
** THIS MIGHT BE RELATED TO ISSUE:** https://github.com/quarto-dev/quarto-cli/issues/909#issue-1238560733
When attempting to preview or render a QMD file with a PDF format output, quarto attempts to update packages in TeX Live and fails to do it. The following is a minimal example that gives ... | {
"assignee": "dragonstyle",
"comments": 4,
"created_at": "2022-08-03T12:00:53Z",
"creator": "hebertodelrio",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1659,
"state": "open",
"title": "Quarto trying to update tlmgr fails",
"url": "http... |
### Bug description
Hi, I am preparing a Beamer presentation in Quarto which will be rendered into `.pdf` later. When I include date of the talk and my institute in the YAML, it prints date before the institution in the pdf version. We generally prefer the date after the institution. In the source files of Quarto Be... | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2022-08-03T11:04:13Z",
"creator": "gulinan",
"is_pull_request": false,
"labels": [
"bug",
"enhancement",
"early-in-release"
],
"locked": false,
"milestone": "v1.4",
"number": 1658,
"state": "open",
"title": "Add Support for B... |
I'm looking to potentially use multiple figure environments, so that one set of figures can be referenced and numbered as usual (e.g. Figure 1, Figure 2 etc) but also allow for an additional set of numbered figures such as schemes (Scheme 1, Scheme 2 etc..).
The desired result is something like in this manuscript w... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-08-03T01:03:05Z",
"creator": "BradyAJohnston",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1655,
"state": "open",
"title": "Multiple Figure Numbering Environ... |
While running the tutorial for running Quarto in VSCode, after having installed the quarto.msi package, and the VS code quarto extension, the render step fails with a "Quarto Installation not Found" popup. Of course attempting to re-install quarto results in a "do you want to remove quarto" message.
I assume this i... | {
"assignee": "jjallaire",
"comments": 6,
"created_at": "2022-08-02T22:07:08Z",
"creator": "jmagosta",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 1882,
"state": "open",
"title": "Quarto and R paths not found ",
"url": "https://github.com/quarto-dev/... |
### Bug description
OJS blocks starting on empty lines misbehave in different ways:
- The empty line is reflected on the `echo` output
- The empty line causes the ojs runtime to throw during initialization, which means some of the dynamic CSS fixups don't happen
Minimal repro for both issues:
---
fo... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-08-02T18:44:36Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1648,
"state": "closed",
"title": "problems with OJS blocks starting on empty lines",
"url": "h... |
### Bug description
Table captions and references do not render in the HTML document when using Jupyter Lab. Also, the code will still appear even if using `echo: false`.
I'm using MacOS Monterrey 12.4 (M1)
````md
```header
---
title: 'Table Issue'
author: 'Phil Patton'
number-sections: false
highlight-sty... | {
"assignee": "jjallaire",
"comments": 1,
"created_at": "2022-08-02T18:23:21Z",
"creator": "philpatton",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1646,
"state": "closed",
"title": "Issue with table captions, references in Jupyter Lab",
... |
I'd like to make a custom theme which adds a logo to the top left and/or right corners of every `revealjs` slide. I see this [example](https://reveal-hugo.dzello.com/logo-example/#) with [Hugo](https://github.com/dzello/reveal-hugo/blob/master/exampleSite/content/logo-example/_index.md). Is there any way to do this wit... | {
"assignee": "cderv",
"comments": 3,
"created_at": "2022-08-02T17:10:18Z",
"creator": "jcarpi",
"is_pull_request": false,
"labels": [
"enhancement",
"revealjs"
],
"locked": false,
"milestone": "v1.4",
"number": 1883,
"state": "open",
"title": "Adding logos to all `revealjs` slides",
"... |
See https://github.com/quarto-ext/fontawesome/issues/13
Sometimes we want to resolve shortcodes differently (or not at all) depending on the context that the shortcode was called. This isn't possible right now. | {
"assignee": null,
"comments": 0,
"created_at": "2022-08-02T14:56:54Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1644,
"state": "open",
"title": "Capture context of shortcode invocation",
"url": "https://github.... |
### Bug description
Quarto 1.0.37 returns the following error when trying the sample *.qmd available from https://quarto.org/docs/computations/julia.html
`[Errno 2] No such file or directory: '/Applications/Julia-1.7.app/Contents/Resources/julia/bin/julia'
`
on a macOs, where Julia has been installed with Julia... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-02T14:50:39Z",
"creator": "mgiugliano",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1643,
"state": "closed",
"title": "Unexpected Julia path (macOs, using brew and juliaup)",
"url": "... |
### Bug description
Related to #1246, `quarto publish gh-pages`does not respect `output-dir: _site`
instead renders to `./`.
`_quarto.yml` [full [here](https://github.com/eyayaw/eyayaw.github.io/blob/gh-pages/_quarto.yml)]
```yml
project:
type: website
output-dir: _site
```
The last `quarto publish` ... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-02T13:33:46Z",
"creator": "eyayaw",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1640,
"state": "closed",
"title": "`quarto publish gh-pages`does not respect `output-dir: _site`",
"url... |
### Bug description
Cross references to section headings are wrong (rendered in-text as a reference to the last appendix with a `#sec id`) when:
- the project is of type book
- when rendering to docx only (pdf and html render correctly)
- the project is using an appendices key in the book config in the _quarto.ym... | {
"assignee": "jjallaire",
"comments": 5,
"created_at": "2022-08-02T02:45:05Z",
"creator": "dan-cloney",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1637,
"state": "closed",
"title": "Cross references for section headings fail when there are... |
### Bug description
Currently, it does not appear like we can run arbitrary R expressions by prefacing the parameter value with !r. Here is an example arbitrary of R expression parameters from the R4DS book (https://r4ds.had.co.nz/r-markdown.html#parameters).
```
---
title: "testing"
format: html
editor: visua... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-01T16:54:51Z",
"creator": "parmsam",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1629,
"state": "closed",
"title": "Error using arbitrary R expressions in YAML params",
"url": "https:... |
Hi! I'm following the tutorials but I didn't manage to reproduce the [Computations Tutorial](https://quarto.org/docs/get-started/computations/vscode.html#multiple-figures) plotly 2-column plot.
According to the tutorial I'm supposed to get
<img width="779" alt="image" src="https://user-images.githubusercontent.com/13... | {
"assignee": "jjallaire",
"comments": 5,
"created_at": "2022-08-01T15:31:27Z",
"creator": "joaogui1",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1628,
"state": "closed",
"title": "Can't reproduce \"Computations\" Tutorial 2-column plot",
... |
### Bug description
Setting the mermaid format to svg will result in text inside some diagram boxes being clipped:
````
---
mermaid-format: svg
---
```{mermaid}
graph
L --- P1
L(library)
P1(dashboard <br/> dplyr 0.8.5)
```
````
![image](https://user-images.githubusercontent.com/12927842/182142569-10b... | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2022-08-01T12:00:37Z",
"creator": "edavidaja",
"is_pull_request": false,
"labels": [
"bug",
"needs-discussion",
"mermaid"
],
"locked": false,
"milestone": "v1.2",
"number": 1622,
"state": "closed",
"title": "`mermaid-format: svg`... |
### Bug description
calling `quarto render` on a document with an inline style span will present a syntax error in the rendered HTML.
````
```{mermaid}
graph
L --- P1
L(library)
P1("dashboard <br/> <span style='color:red'>dplyr 1.0.5</span>")
```
````
The same document can be rendered and exported correct... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-08-01T11:47:12Z",
"creator": "edavidaja",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1621,
"state": "closed",
"title": "Mermaid diagrams with inline styles present syntax error",
"... |
Dear RStudio Quarto developers,
first of all - in general I like a lot what I have seen so far from quarto in RStudio - thanks a lot!
I have a question regarding an unexpected behavior:
If I render a quarto document, identical plots are omitted in a code chunk, while they show up as expected when they are not id... | {
"assignee": null,
"comments": 1,
"created_at": "2022-08-01T07:01:38Z",
"creator": "sebastian-gerdes",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1631,
"state": "closed",
"title": "Plots not included as expected in quarto document",
"url": "https://git... |
### Bug description
For revtex, `\author` `\title` and etc are included after `\begin{document}`.
But quarto automatically transform `\author` `\title` before `\begin{document}` which causes errors.
It is a general issue for using different `documentclass`
Here is the qmd:
[test.txt](https://github.com/quart... | {
"assignee": null,
"comments": 2,
"created_at": "2022-08-01T02:35:41Z",
"creator": "Lightup1",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1617,
"state": "closed",
"title": "incompatible with revtex",
"url": "https://github.com/quarto-dev/q... |
### Bug description
Recreating the exact same code from the [computations tutorial](https://quarto.org/docs/get-started/computations/vscode.html) but using Julia instead of Python breaks the subfigure functionality. Instead of rendering a figure with a main caption and two subcaptions, the first `fig-subcap` is used... | {
"assignee": null,
"comments": 1,
"created_at": "2022-07-31T21:30:40Z",
"creator": "alonsoC1s",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1616,
"state": "closed",
"title": "Subfigures not supported on Julia",
"url": "https://github.com/qu... |
### Bug description
When running `quarto render` with the CLI, `README.qmd` files seem to be treated differently from files with other names. I have created minimal `.qmd` documents with nothing other than a top-level header, and the issue persists, so it is not related to the Quarto syntax of the documents. There are... | {
"assignee": "jjallaire",
"comments": 5,
"created_at": "2022-07-31T21:11:51Z",
"creator": "MCMaurer",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 1615,
"state": "open",
"title": "Can't render README.qmd by default or recursively",
"url"... |
### Bug description
When using Julia and rendering to PDF the figures in the final PDF are raster images instead of the vector graphics that R and Python produce by default. I tried fixing this with
```md
format:
pdf:
default-image-extension: tex
```
but the issue persists.
Is this expected behavi... | {
"assignee": null,
"comments": 3,
"created_at": "2022-07-31T19:24:24Z",
"creator": "alonsoC1s",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1614,
"state": "closed",
"title": "PDF output for Julia produces raster instead of vector graphics for... |
### Bug description
I generated a blog project with the default quarto command on MacOS 12.3. Then I added some Julia code to `posts/welcome/index.qmd` such that it reads:
````qmd
---
title: "Welcome To My Blog"
author: "Tristan O'Malley"
date: "2022-07-27"
categories: [news]
jupyter: julia-1.7
---
This i... | {
"assignee": null,
"comments": 2,
"created_at": "2022-07-31T18:50:19Z",
"creator": "jkrumbiegel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1613,
"state": "closed",
"title": "Website mode seems to prohibit persistent Julia kernels",
"ur... |
### Bug description
If I specify `number-sections: false` in my yaml header for a quarto book and render to a narrow HTML page the chapter number shows up in the table of contents at the top of the page.
To see the bug, make the default book project with the RStudio IDE (I am using 2022.07.0 Build 548 on a Mac runn... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-07-31T16:20:40Z",
"creator": "RaymondBalise",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1611,
"state": "closed",
"title": "`number-sections: false` in _quarto.yml for a HTML book ... |
https://github.com/quarto-dev/quarto-web/blob/bb8763a1c5164c2ac9b5b72188747e286fe34cc2/docs/projects/quarto-projects.qmd#L70
I would suggest **command line**. It was not directly clear to me looking at the code chunk that you meant bash.
While we are on the subject, why doesn't hitting the render button on a sin... | {
"assignee": null,
"comments": 2,
"created_at": "2022-07-31T15:54:30Z",
"creator": "ShKlinkenberg",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 1632,
"state": "closed",
"title": "Command line bold",
"url": "https://github.com/quarto... |
In the [Creating Citeable Articles](https://quarto.org/docs/authoring/create-citeable-articles.html#google-scholar) the metadata compatible with Google Scholar is listed. The set of metadata tags accepted by Google Scholar is a subset of a more general open standard parsed by [Zotero](https://www.zotero.org/support/dev... | {
"assignee": "dragonstyle",
"comments": 8,
"created_at": "2022-07-31T13:32:19Z",
"creator": "dmi3kno",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.2",
"number": 1609,
"state": "closed",
"title": "Zotero metadata for automatic parsing of citation",
"url": "https://g... |
Following the tutorial on current MacOS, I see lots of errors.
```
>❯ quarto render hello.qmd
ERROR: Jupyter kernel 'python3' not found.
```
```
❯ quarto check jupyter
[✓] Checking Python 3 installation....OK
Version: 3.9.9
Path: /usr/local/opt/python@3.9/bin/python3.9
Jupyter: 4.11.1... | {
"assignee": null,
"comments": 2,
"created_at": "2022-07-31T07:25:17Z",
"creator": "cormullion",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1634,
"state": "closed",
"title": "Errors following tutorial",
"url": "https://github.com/quarto-dev/quarto-cli/... |
Many journal submissions require 1-inch margins, with a set page limit. Currently, Quarto's PDF output includes a page number at the bottom of the page, and this is included within the body text. This effectively reduces the available amount of space per page to write.
I couldn't find an existing Quarto YAML option ... | {
"assignee": null,
"comments": 1,
"created_at": "2022-07-31T00:41:17Z",
"creator": "SEthanMilne",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 1606,
"state": "closed",
"title": "Feature Request: Page Number Manipulation & Options",
"url": "https://github... |
### Bug description
The scenario is the following:
- a blog is set up with quarto template
- there is a post in a directory starting with letter "u", let's say the directory is called `posts\useful_stuff`
- the blog post is a `.qmd` file
- in a blog post, there is an `ojs` cell (doesn't matter what is inside)
... | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2022-07-31T00:01:04Z",
"creator": "paniterka",
"is_pull_request": false,
"labels": [
"bug",
"ojs-engine"
],
"locked": false,
"milestone": null,
"number": 1605,
"state": "closed",
"title": "When publishing ojs blog posts, quarto rende... |
Currently, when I set background-iframe, the site is not scrollable.
Reprex:
```
---
title: "Untitled"
format: revealjs
---
## {background-iframe="https://quarto.org"}
```
My currently workaround is
```
## {fullscreen="true"}
<iframe class="stretch" data-src="https://quarto.org/" title="https:... | {
"assignee": null,
"comments": 0,
"created_at": "2022-07-30T20:14:17Z",
"creator": "trangdata",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1603,
"state": "open",
"title": "Background iframe in revealjs is not scrollable",
"url"... |
We could embed this on comments or metadata across formats. It seems like a good idea, and could help track down issues we see in the wild.
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1594
<div type='discussions-op-text'>
<sup>Originally posted by **joshualeond** July 29, 2022</sup>
... | {
"assignee": null,
"comments": 1,
"created_at": "2022-07-30T15:38:30Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 1601,
"state": "open",
"title": "Show Quarto version info in rendered document",
"url": "h... |
Ideally, we would have list of figures/tables functionality independent of format.
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/1564
<div type='discussions-op-text'>
<sup>Originally posted by **alchalu** July 28, 2022</sup>
Hello,
is there any possibility to add a list of figures ... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-07-30T15:13:14Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 1600,
"state": "open",
"title": "Add list of figures/tables to a word doc... |
### Bug description
Consider the minimal working example
``````
---
title: "Minimal Working Example"
format:
html:
df-print: paged
---
## Tables
```{r}
#| echo: true
#| warning: false
#| error: false
#| output: true
#| label: tbl-iris
#| tbl-cap: Edgar Anderson's Iris Data.
iris
```
```... | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2022-07-30T08:47:27Z",
"creator": "rgaiacs",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.1",
"number": 1597,
"state": "closed",
"title": "tbl-cap does not work with df-print: paged",
"url": "https:/... |
### Bug description
Functions like `$\ket{A}$` and `$\bra{C}$` work just fine in main body, but fail in abstract when compiling to both HTML and PDF.
The if one deletes the end quote and uncomments the end of line 13 below (the abstract), the build fails, error given is " ERROR: YAMLError: unknown escape sequence... | {
"assignee": null,
"comments": 1,
"created_at": "2022-07-30T04:54:37Z",
"creator": "joshjob42",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 1595,
"state": "closed",
"title": "Commands like $\\ket{A}$ work in main body but not in abstract",
... |
Currently some option cannot be found in search like `class-output` only available for knitr chunks.
Those should be added, possibly with lower weight than main guide page results. | {
"assignee": null,
"comments": 2,
"created_at": "2022-07-30T00:21:44Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 1592,
"state": "closed",
"title": "Add knitr and jupyter cells option in search ",
"url": "htt... |
### Bug description
When using ojs_define with Python and pandas, it is not possible to pass an instance of pd.Series, while it is possible to do so for a pd.Dataframe. If a series is passed, ojs_define produces a type error and stops the render:
`TypeError: Object of type Series is not JSON serializable`
In order... | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2022-07-29T23:18:31Z",
"creator": "paniterka",
"is_pull_request": false,
"labels": [
"bug",
"ojs-engine"
],
"locked": false,
"milestone": "Future",
"number": 1589,
"state": "closed",
"title": "In Python, ojs_define() fails when tryin... |
I've started to write all of my personal notes in Quarto, and as I use the Zettelkasten method, what would be really great would be to have some kind of two-way links between pages. One way to do this would be to have an option to have some kind of 'what links here' section at the bottom of each page to make links more... | {
"assignee": null,
"comments": 2,
"created_at": "2022-07-29T19:58:27Z",
"creator": "supertrianguloid",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "Future",
"number": 1585,
"state": "open",
"title": "Backlinks in website output",
"url": "https://github.com/quarto-dev/q... |
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