| Gene symbol,Ranking,Annotation & reasoning,Additional note,Data Source |
| TCL1A,1-50,B cell,,"""Identification and multimodal characterization of a specialized epithelial cell type associated with Crohn’s disease"", CD samples collected from terminal ileum (TI) and ascending colon (AC) through endoscopy and surgical" |
| MS4A1,1-50,B cell,, |
| CD79A,1-50,B cell,, |
| BLK,50-100,B cell,, |
| FCRL1,50-100,B cell,, |
| PAX5,50-100,B cell,, |
| TNFRSF13C,50-100,B cell,, |
| CNR2,50-100,B cell,, |
| CD22,50-100,B cell,Mast, |
| FAM129C,100-150,B cell,, |
| VPREB3,100-150,B cell,, |
| BEST4,1-50,BEST4,Canonical marker, |
| CA7,1-50,BEST4,Canonical marker, |
| OTOP2,1-50,BEST4,Canonical marker, |
| CA4,50-100,BEST4,Co-exp with CA7, |
| NBPF19,50-100,BEST4,, |
| NBPF14,50-100,BEST4,, |
| MEIS1,100-150,BEST4,, |
| ADCY5,100-150,BEST4,, |
| SPIB,100-150,BEST4,, |
| AQP8,1-50,Clonocyte,, |
| CEACAM1,1-50,Clonocyte,, |
| AQP8,1-50,Colonocyte,, |
| CA2,50-100,Colonocyte,Multiple cell types, |
| CA1,50-100,Colonocyte,, |
| HMGCS2,50-100,Colonocyte,Multiple cell types, |
| CD24,50-100,Colonocyte,Multiple cell types, |
| MS4A12,100-150,Colonocyte,, |
| SLC37A2,100-150,Colonocyte,, |
| CEACAM7,100-150,Colonocyte,, |
| SLC26A2,100-150,Colonocyte,, |
| TOP2A,1-50,Cycling,, |
| MKI67,1-50,Cycling,, |
| HMGB2,50-100,Cycling,, |
| OLFM4,1-50,Cycling/Stem,, |
| CENPF,50-100,Cycling/Stem,, |
| PRC1,50-100,Cycling/Stem,, |
| CCNB2,50-100,Cycling/Stem,, |
| AURKB,100-150,Cycling/Stem,, |
| GTSE1,100-150,Cycling/Stem,, |
| RRM2,100-150,Cycling/Stem,, |
| CHGB,1-50,EEC,, |
| CHGA,1-50,EEC,, |
| PCSK1N,50-100,EEC,, |
| KCNB2,50-100,EEC,, |
| NEUROD1,50-100,EEC,, |
| FEV,100-150,EEC,, |
| SCG2,100-150,EEC,, |
| SSTR5-AS1,100-150,EEC,, |
| ACKR1,1-50,Endo,Vein, |
| VWF,1-50,Endo,Cannonical endo marker, |
| PECAM1,1-50,Endo,Canonical marker, |
| CLDN5,50-100,Endo,, |
| SOX18,50-100,Endo,, |
| RAMP3,50-100,Endo,, |
| RAMP2,50-100,Endo,, |
| CLEC14A,100-150,Endo,, |
| TIE1,100-150,Endo,, |
| APOB,1-50,Enterocyte,Multiple cell types, |
| APOA4,1-50,Enterocyte,Multiple cell types, |
| APOA1,1-50,Enterocyte,, |
| SLC15A1,50-100,Enterocyte,, |
| SLC6A19,50-100,Enterocyte,, |
| CYP3A4,100-150,Enterocyte,, |
| MTTP,100-150,Enterocyte,, |
| CUBN,100-150,Enterocyte,, |
| SLC10A2,100-150,Enterocyte,, |
| SLC7A9,100-150,Enterocyte,, |
| FABP1,1-50,Epi,Multiple cell types, |
| COL1A2,1-50,Fibro,"Canonical marker, high expression", |
| COL1A1,1-50,Fibro,"Canonical marker, high expression", |
| DCN,1-50,Fibro,"Canonical marker, high expression", |
| COL3A1,50-100,Fibro,, |
| PDGFRA,50-100,Fibro,, |
| MFAP4,50-100,Fibro,, |
| SFRP2,50-100,Fibro,, |
| C1R,100-150,Fibro,, |
| TFF3,1-50,Goblet,"Canonical marker, high expression", |
| MUC2,1-50,Goblet,"Canonical marker, high expression", |
| SPINK4,1-50,Goblet,, |
| ITLN1,50-100,Goblet,, |
| CLCA1,50-100,Goblet,, |
| FCGBP,50-100,Goblet,, |
| BEST2,100-150,Goblet,, |
| DUOX2,1-50,LND,Important cell state in disease, |
| LCN2,1-50,LND,Important cell state in disease, |
| DMBT1,1-50,LND,Important cell state in disease, |
| REG1A,1-50,LND,Important cell state in disease, |
| SAA1,50-100,LND,, |
| NOS2,50-100,LND,, |
| PI3,100-150,LND,, |
| PDZK1IP1,100-150,LND,, |
| CD55,100-150,LND,, |
| CPA3,1-50,Mast,, |
| KIT,1-50,Mast,, |
| CTSG,50-100,Mast,, |
| GATA2,50-100,Mast,, |
| TPSAB1,50-100,Mast,, |
| TPSB2,50-100,Mast,, |
| MS4A2,100-150,Mast,, |
| HDC,100-150,Mast,, |
| C1QA,1-50,Myel,"Canonical myeloid marker, too high expression", |
| C1QB,1-50,Myel,Canonical myeloid marker, |
| C1QC,50-100,Myel,Canonical myeloid marker; co-express with C1QA and C1QB, |
| CSF3R,50-100,Myel,, |
| FPR1,100-150,Myel,, |
| MS4A6A,100-150,Myel,, |
| TYROBP,100-150,Myel,, |
| AIF1,100-150,Myel,, |
| MS4A7,100-150,Myel,, |
| CSF2RA,100-150,Myel,, |
| S100A8,1-50,Neutrophils,, |
| S100A9,1-50,Neutrophils,, |
| NKG7,1-50,NK,, |
| DEFA6,1-50,Paneth,, |
| DEFA5,50-100,Paneth,, |
| ITLN2,100-150,Paneth,, |
| PLA2G2A,100-150,Paneth,, |
| CDKN1C,100-150,Paneth,, |
| IGHA1,1-50,PCs,, |
| JCHAIN,1-50,PCs,, |
| IGHA2,1-50,PCs,, |
| IGKC,50-100,PCs,"Canonical marker, multiple cell types, too high expression", |
| CCR10,50-100,PCs,, |
| MZB1,50-100,PCs,, |
| DERL3,100-150,PCs,, |
| TNFRSF17,100-150,PCs,, |
| AC096579.15,100-150,PCs,, |
| ENAM,100-150,PCs,, |
| LGR5,1-50,Stem,, |
| CD3D,1-50,T,, |
| CD8A,1-50,T,, |
| TRAC,1-50,T,, |
| FOXP3,1-50,T,Tregs, |
| CTLA4,1-50,T,, |
| GZMB,1-50,T,T-cyto, |
| CD4,50-100,T,, |
| CCL5,50-100,T,, |
| CD3E,50-100,T,, |
| CD247,100-150,T,, |
| TRBC1,100-150,T,, |
| AC092580.4,100-150,T,, |
| CD96,100-150,T,, |
| LRMP,1-50,Tuft,, |
| POU2F3,50-100,Tuft,, |
| HPGDS,50-100,Tuft,, |
| SH2D6,100-150,Tuft,, |
| CCDC129,100-150,Tuft,, |
| SH2D7,100-150,Tuft,, |
| PTGS1,100-150,Tuft,, |
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