| a <- tempdir() |
| a <- idbac_create("temp", |
| a) |
| a <- idbac_connect("temp", |
| dirname(a))[[1]] |
|
|
| b <- DBI::dbListTables(a) |
|
|
| test_that("idbac_create() creates the correct tables", { |
| expect_true("locale" %in% b) |
| expect_true("mass_index" %in% b) |
| expect_true("metadata" %in% b) |
| expect_true("spectra" %in% b) |
| expect_true("version" %in% b) |
| expect_true("xml" %in% b) |
| }) |
|
|
|
|
| z <- lapply(b, function(x) paste0(DBI::dbListFields(a, x), collapse = "|")) |
|
|
| names(z) <- b |
|
|
|
|
| test_that("idbac_create() creates the correct fields", { |
| expect_equal(z$locale, |
| "locale") |
| expect_equal(z$mass_index, |
| "spectrum_mass_hash|mass_vector") |
| expect_equal(z$metadata, |
| "strain_id|genbank_accession|ncbi_taxid|kingdom|phylum|class|order|family|genus|species|maldi_matrix|dsm_cultivation_media|cultivation_temp_celsius|cultivation_time_days|cultivation_other|user_firstname_lastname|user_orcid|pi_firstname_lastname|pi_orcid|dna_16s") |
| expect_equal(z$spectra, |
| "spectrum_mass_hash|spectrum_intensity_hash|xml_hash|strain_id|peak_matrix|spectrum_intensity|max_mass|min_mass|ignore|number|time_delay|time_delta|calibration_constants|v1_tof_calibration|data_type|data_system|spectrometer_type|inlet|ionization_mode|acquisition_method|acquisition_date|acquisition_mode|tof_mode|acquisition_operator_mode|laser_attenuation|digitizer_type|flex_control_version|id|instrument|instrument_id|instrument_type|mass_error|laser_shots|patch|path|laser_repetition|spot|spectrum_type|target_count|target_id_string|target_serial_number|target_type_number") |
| expect_equal(z$version, |
| "idbac_version|r_version|db_version") |
| expect_equal(z$xml, |
| "xml_hash|xml|manufacturer|model|ionization|analyzer|detector|instrument_metafile") |
| }) |
|
|
|
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