pmhc_data / immunogenicity

65.2 MB

3 contributors

History: 11 commits

mikessh

immunogenicity: the MHC class-II corpus the shipped class-II model is fitted on

f437d55 3 days ago

staged
immunogenicity: deposit the staged IEDB export, the root of the provenance chain 3 days ago
SOURCES.md

20.5 kB
immunogenicity: the MHC class-II corpus the shipped class-II model is fitted on 3 days ago
chowell_iedb_full.tsv.gz

7.23 MB
xet

immunogenicity: legacy arms, and species keyed on the restricting allele 4 days ago
chowell_iedb_full_matched.tsv.gz

267 kB
xet

immunogenicity: legacy arms, and species keyed on the restricting allele 4 days ago
chowell_rebuilt.tsv.gz

4.43 MB
xet

Split neoantigens from immunogenicity; add per-directory SOURCES with verified citations and audits 5 days ago
chowell_rebuilt_hla_matched.tsv.gz

929 kB
xet

Split neoantigens from immunogenicity; add per-directory SOURCES with verified citations and audits 5 days ago
corpus_iedb_mhc2.log

1.53 kB
immunogenicity: the MHC class-II corpus the shipped class-II model is fitted on 3 days ago
corpus_iedb_mhc2.parquet

8.51 MB
xet

immunogenicity: the MHC class-II corpus the shipped class-II model is fitted on 3 days ago
hla_pop_freqs.tsv.gz

56.7 kB
xet

Rework #9 into workhorse neoag DB (tested + candidates) + HLA population freqs about 2 months ago
iedb_labeled.tsv.gz

9.83 MB
xet

neoag: primary datasets take precedence over CEDAR/Neopep; trim blank cols from iedb_labeled about 2 months ago
immunogenicity_legacy_arms.tsv.gz

120 kB
xet

immunogenicity: legacy arms, and species keyed on the restricting allele 4 days ago
kesmir_rebuilt.tsv.gz

576 kB
xet

Split neoantigens from immunogenicity; add per-directory SOURCES with verified citations and audits 5 days ago
kesmir_rebuilt_hla_matched.tsv.gz

501 kB
xet

Split neoantigens from immunogenicity; add per-directory SOURCES with verified citations and audits 5 days ago