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# Copyright (C) 2010-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-paravis | src/PV_SWIG/no_wrap/paravisSM.py | Python | lgpl-2.1 | 1,164 | [
"ParaView"
] | 7ccfa30f3b793d9ae349c649c40abb8ef88a8582417d0de5e3859fa5391ec8d4 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ... | shyamalschandra/neon | examples/mnist_mlp.py | Python | apache-2.0 | 4,538 | [
"Gaussian"
] | 3b6c367076d50761142473ac6a670102d71e20aa8475b9003d9b8d636585bb97 |
#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU ... | fabio-otsuka/invesalius3 | invesalius/data/vtk_utils.py | Python | gpl-2.0 | 8,929 | [
"VTK"
] | 12f1c80561270343a8ea7fde0ca449914813686ccc476d299e72b8ca52d91ac9 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/porous_flow/doc/content/modules/porous_flow/tests/dispersion/dispersion.py | Python | lgpl-2.1 | 1,987 | [
"MOOSE"
] | a1a45dbc49b36f353b62310f27510bb6a3f2663aa82315747355dff59b9bce15 |
<<<<<<< HEAD
<<<<<<< HEAD
import test.support
# Skip tests if _multiprocessing wasn't built.
test.support.import_module('_multiprocessing')
# Skip tests if sem_open implementation is broken.
test.support.import_module('multiprocessing.synchronize')
# import threading after _multiprocessing to raise a more revelant err... | ArcherSys/ArcherSys | Lib/test/test_concurrent_futures.py | Python | mit | 71,624 | [
"Brian"
] | 906675db18f8b43a85f3f7788ca9a91467268535d562470728325d0346bb571b |
# proxy module
from __future__ import absolute_import
from mayavi.preferences.preferences_helpers import *
| enthought/etsproxy | enthought/mayavi/preferences/preferences_helpers.py | Python | bsd-3-clause | 107 | [
"Mayavi"
] | 45f12e3791e2abb33e77611f12a9ab6880bffaf41283d07b49c9b50a42386a6a |
import numpy as np
def simple_mask(im_rgb, bandwidth=2, bgnd_std=2.5, tissue_std=30,
min_peak_width=10, max_peak_width=25,
fraction=0.10, min_tissue_prob=0.05):
"""Performs segmentation of the foreground (tissue)
Uses a simple two-component Gaussian mixture model to mask tissue... | DigitalSlideArchive/HistomicsTK | histomicstk/utils/simple_mask.py | Python | apache-2.0 | 8,216 | [
"Gaussian"
] | f4205d33ac8c69177c190a96ae22573ebe07b8edcc0e44ec4991bfdc49c5b5ff |
#
# Honeybee: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Honeybee.
#
# Copyright (c) 2013-2020, Mostapha Sadeghipour Roudsari <mostapha@ladybug.tools>
# Honeybee is free software; you can redistribute it and/or modify
# it under the terms of the GNU G... | mostaphaRoudsari/Honeybee | src/Honeybee_Energy Simulation Par.py | Python | gpl-3.0 | 12,336 | [
"EPW"
] | 0e5246c6e08f2e8eeff50644faa5586aef7e3d57d29fce5663897c4a4cd88cec |
from octopus.core import app
from octopus.modules.jper import models
from octopus.lib import http, dates
import json
class JPERException(Exception):
pass
class JPERConnectionException(JPERException):
pass
class JPERAuthException(JPERException):
pass
class ValidationException(JPERException):
pass
cl... | JiscPER/magnificent-octopus | octopus/modules/jper/client.py | Python | apache-2.0 | 8,448 | [
"Octopus"
] | a2c388a5809ee54029d9d1133263ed0f05a5d6d85e2d333ecdf914a9b954bd74 |
from Firefly import logging
from Firefly.components.zwave.device_types.motion_sensor import ZwaveMotionSensor
from Firefly.const import DEVICE_TYPE_MOTION
TITLE = 'Zwave Motion Sensor'
DEVICE_TYPE = DEVICE_TYPE_MOTION
def Setup(firefly, package, **kwargs):
logging.message('Entering %s setup' % TITLE)
sensor = Mo... | Firefly-Automation/Firefly | Firefly/components/zwave/zwave_generic_devices/motion_sensor.py | Python | apache-2.0 | 561 | [
"Firefly"
] | 42d62658cf0ef1107819aaf694a8a02cd0a39d0eecb9640c692a59e5e9902432 |
import json
import wget
import os.path
from distutils.dir_util import mkpath
from urllib.error import HTTPError
blocktopus_dir = os.path.abspath(
os.path.join(os.path.dirname(__file__), '..', 'octopus', 'blocktopus')
)
resources_dir = os.path.join(blocktopus_dir, 'resources', 'cache')
resources_json = os.path.joi... | richardingham/octopus | tools/build.py | Python | mit | 2,379 | [
"Octopus"
] | 2cab2842d700bc498b7ca4f8ec098ab0b7a0be7523ca19a4e5f97820c3e7d586 |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/tensorflow | tensorflow/python/keras/utils/kernelized_utils_test.py | Python | apache-2.0 | 4,989 | [
"Gaussian"
] | 0bcbe8c899200cd9027d025f3fa587b5c33b8179e25d9875d7d4bc9e9576f5b6 |
import sys
import maya.OpenMaya as OpenMaya
import maya.OpenMayaMPx as OpenMayaMPx
kPluginNodeName = "MitsubaSSSDipoleShader"
kPluginNodeClassify = "shader/volume"
kPluginNodeId = OpenMaya.MTypeId(0x87016)
class dipole(OpenMayaMPx.MPxNode):
def __init__(self):
OpenMayaMPx.MPxNode.__init__(self)
m... | hpd/MitsubaForMaya | plug-ins/mitsuba/materials/dipole.py | Python | mit | 9,561 | [
"Amber",
"ESPResSo"
] | fc2c6b9ece1a61ce937f4228fc56907607577675144cef05064fc1791ed04de5 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | psci2195/espresso-ffans | testsuite/python/icc.py | Python | gpl-3.0 | 3,783 | [
"ESPResSo"
] | bdb4b6222e3beabad78991ebfcbdd1ff9501cd5cae6106c0923f051b9eb46567 |
# -*- coding: utf-8 -*-
"""
Created on Tue Aug 30 08:57:31 2016
@author: nicholas
The Goal of this is to have a unified place to put the useful
python 3.5 functions or templates
how I got the fastq file
# seqtk sample -s 27 ~/GitHub/FA/pseudochromosome/data/20150803_Abram1/ \
reads/3123-1_1_trimmed.fastq .0005
ba... | nickp60/pyutilsnrw | tests/test_utils3_5.py | Python | mit | 21,944 | [
"BLAST"
] | 4cd7dfefd12dcaf75aad3c72a65e6c7406687988dd1af2f650e70e94fa378eaf |
#!env/python3
# coding: utf-8
import os
import sys
import datetime
import sqlalchemy
import subprocess
import reprlib
import time
from common import *
from progress.bar import Bar
from sqlalchemy import Table, Column, Integer, String, Boolean, ForeignKey, Sequence, UniqueConstraint, Index, func, distinct
from sql... | REGOVAR/Sandbox | benchs/db/scripts/poc_007.py | Python | agpl-3.0 | 7,951 | [
"pysam"
] | a5ef2e0dee10ac79815541975a3f5ee603b8ab96ca382afdff3828c8483e6a78 |
import itertools
import pddl_types
import f_expression
import tasks
def parse_condition(alist):
condition = parse_condition_aux(alist, False)
return condition
def parse_condition_aux(alist, negated):
"""Parse a PDDL condition. The condition is translated into NNF on the fly."""
tag = alist[0]
if... | GKIFreiburg/gki_symbolic_planning | tfd_modules/downward/translate/pddl/conditions.py | Python | bsd-3-clause | 25,491 | [
"VisIt"
] | ecf986f6acc3e02f0db7e83b7c0d9bbc8469636ae4777a870c1d4fe4624c0e71 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | kain88-de/mdanalysis | package/MDAnalysis/topology/base.py | Python | gpl-2.0 | 6,373 | [
"MDAnalysis"
] | cd86b22928a48390fa1a537287c05facc87d2dcff7e15898465683c2a101d55b |
import numpy as np
from scipy.stats import norm
def lerp(val, low, high):
"""Linear interpolation"""
return low + (high - low) * val
def lerp_gaussian(val, low, high):
"""Linear interpolation with gaussian CDF"""
low_gau = norm.cdf(low)
high_gau = norm.cdf(high)
lerped_gau = lerp(val, low_gau,... | dribnet/plat | plat/interpolate.py | Python | mit | 1,527 | [
"Gaussian"
] | 422ecb961d67387320af15cd2dee534fabf4e9de3359d1fcb6c59aa369b92500 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# pylint: disable=C0103
# We disable C0103 because the unittest prevailing style is camelCase
"""tools.py
This module provides helper functions for tests.
(c) The James Hutton Institute 2017-2019
Author: Leighton Pritchard
Contact:
leighton.pritchard@hutton.ac.uk
Leigh... | widdowquinn/find_differential_primers | tests/tools.py | Python | mit | 9,477 | [
"BLAST"
] | 78e0eecb27637ca3f895f35cc0a9d3d4c2ed97c325061fdbd8556f5d247ad389 |
#!/usr/bin/env python
# Copyright 2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | sunqm/pyscf | pyscf/tools/test/test_cubegen.py | Python | apache-2.0 | 2,994 | [
"PySCF"
] | 18df8e480fec78bd67c25ddc806dc5c24c6a497050123ff7da64454eea66acd2 |
"""
This is the interface to DIRAC PilotAgentsDB.
"""
__RCSID__ = "$Id$"
from DIRAC import gConfig, S_OK, S_ERROR
import DIRAC.Core.Utilities.Time as Time
from DIRAC.Core.DISET.RequestHandler import RequestHandler
from DIRAC.ConfigurationSystem.Client.Helpers.Registry import getUsernameForDN
from DIRAC.WorkloadManag... | fstagni/DIRAC | WorkloadManagementSystem/Service/PilotManagerHandler.py | Python | gpl-3.0 | 14,504 | [
"DIRAC"
] | 5e228bb6ebcf1d4301a1d618f101846471e165a3096ae09a82421b34cd9d03cc |
#
# AtHomePowerlineServer - networked server for CM11/CM11A/XTB-232 X10 controllers
# Copyright (C) 2014 Dave Hocker
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the Lic... | dhocker/athomepowerlineserver | Logging.py | Python | gpl-3.0 | 2,362 | [
"xTB"
] | 4a15569124bf74e9daf3442a3d21c75f3f1a5df68eead68a35d2120f44cb84dd |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
=========================================================
Principal components analysis (PCA)
=========================================================
These figures aid in illustrating how a point cloud
can be very flat in one direction--which is where PCA
comes in to ch... | pdedumast/ShapeVariationAnalyzer | ShapeVariationAnalyzer/Resources/Classifier/generation_shapes.py | Python | apache-2.0 | 20,161 | [
"Gaussian",
"VTK"
] | 4a7b700733f4898001c6e0262b963d4adedf4467b88228961d95e45c0237a3cb |
#!/usr/bin/env python
#############################################################################
##
## Copyright (C) 2009 Nokia Corporation and/or its subsidiary(-ies).
## All rights reserved.
## Contact: Nokia Corporation (qt-info@nokia.com)
##
## This file is part of the test suite of the Qt Toolkit.
##
## $QT_BEG... | radekp/qt | doc/src/diagrams/contentspropagation/standardwidgets.py | Python | lgpl-2.1 | 6,840 | [
"ASE"
] | ef79bcd2a2a15dd63b146a97f1c0b9153f967664007fdd6958f90484ca5c6ea9 |
"""
Generalized linear models currently supports estimation using the one-parameter
exponential families
References
----------
Gill, Jeff. 2000. Generalized Linear Models: A Unified Approach.
SAGE QASS Series.
Green, PJ. 1984. "Iteratively reweighted least squares for maximum
likelihood estimation, and some ... | bavardage/statsmodels | statsmodels/genmod/generalized_linear_model.py | Python | bsd-3-clause | 30,165 | [
"Gaussian"
] | 09180ae627ef6b18e25ca2d71d1879853c24e873c7166216b7fb9017cde86445 |
import sys
import random
from . import wildcardFind, element, loadModel, ChemCompt, exists, Annotator, Pool, ZombiePool,PoolBase,CplxEnzBase,Function,ZombieFunction
import numpy as np
#Todo : To be written
# --Notes
# --StimulusTable
def writeKkit( modelpath, filename,sceneitems=None):
... | rahulgayatri23/moose-core | python/moose/writekkit.py | Python | gpl-3.0 | 25,726 | [
"MOOSE"
] | e07cd135d679f666dfdac76f5ce5403d7a971e9af3a8ef7ce8a789521f426505 |
""" Proxy Renewal agent is the key element of the Proxy Repository
which maintains the user proxies alive
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN MyProxyRenewalAgent
:end-before: ##END
:dedent: 2
:caption: MyProxyRenewalAgent options
"""
from __future__ import ... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Agent/MyProxyRenewalAgent.py | Python | gpl-3.0 | 3,024 | [
"DIRAC"
] | e9afbf577cdcf87280dc260154b38500d507a814154e35b484f926b68d2128a9 |
import sys
from pyneuroml import pynml
####################################################################
# Choose a LEMS/NeuroML2 file and run it with jNeuroML
example_lems_file = 'LEMS_NML2_Ex5_DetCell.xml'
results1 = pynml.run_lems_with_jneuroml(example_lems_file, nogui=True, load_saved_data=True)
######... | 34383c/pyNeuroML | examples/run_jneuroml_plot_matplotlib.py | Python | lgpl-3.0 | 1,165 | [
"NEURON"
] | 2a7cf3405cc3bfd1977bee1d330658c32351aceed4be027a2a6bc0b07eaa98dc |
import time
from pathlib import Path
import cv2
import numpy as np
from pydub import AudioSegment
from pydub.playback import play
import cplexus as plexus
VIDEO_FILE = 'videos/lower3.mp4'
Path("videos/output/original").mkdir(parents=True, exist_ok=True)
Path("videos/output/training").mkdir(parents=True, exist_ok=True... | mertyildiran/Plexus | examples/audio_visual.py | Python | mit | 3,496 | [
"NEURON"
] | 094a50ea65ae6a42ffd70c9d0be144a0b9b0fdedeb000c2b5925134dc93adafc |
# $Id$
"""
This is a comment
"""
from __future__ import print_function
__RCSID__ = "$Revision: 1.16 $"
# $Source: /tmp/libdirac/tmp.stZoy15380/dirac/DIRAC3/DIRAC/Core/Workflow/test/WFSamples.py,v $
from DIRAC.Core.Workflow.Parameter import *
from DIRAC.Core.Workflow.Module import *
from DIRAC.Core.Workflow.Step i... | fstagni/DIRAC | Core/Workflow/test/WFSamples.py | Python | gpl-3.0 | 8,629 | [
"DIRAC"
] | da5a6980e881da770b121b55efd7cd4727f4e0a82ad2c80d9db2b2e4c94fbd26 |
#!/usr/bin/env python
# from distutils.core import setup
from setuptools import setup # , find_packages
import glob
setup(name='cargo-port',
version='1.0',
description='Python Distribution Utilities',
author='Intergalactic Utilities Commission',
maintainer='Eric Rasche',
url='https://gi... | gregvonkuster/cargo-port | setup.py | Python | mit | 743 | [
"Galaxy"
] | eab1c3605b28060619d2d371fe6b8ad0a57d21e36018386d5a319c2aa7f896cb |
import numpy as np
import math
from espressomd.shapes import Rhomboid
from espressomd.shapes import Cylinder
small_epsilon = 0.000000001
large_number = 10000000.0
output_precision = 14
def custom_str(realn):
return str('{:.{prec}f}'.format(realn, prec = output_precision))
def get_triangle_normal(a, b, c):
... | KonradBreitsprecher/espresso | src/python/object_in_fluid/oif_utils.py | Python | gpl-3.0 | 21,450 | [
"ParaView",
"VTK"
] | 5a5afd0f4569fa32966a310ab87e95682e6dc5969623a2ae1c6018b9fe183aa1 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/test/bigdl/chronos/autots/model/test_auto_tcn.py | Python | apache-2.0 | 8,177 | [
"ORCA"
] | 2d87f61ba6b3b474537a810ecd151c7d383088c01599d09d578041caa3e48067 |
import pytest
from gavl import parse
from gavl.parser import nodes
from gavl.parser.nodes import (VarNode, BinaryOpNode, RelationNode, ApplyNode,
AssignNode, IntNode, BarOpNode, BoolLiteral,
BoolExprNode)
from gavl.parser.visitors import GavlToRelAlg
from ga... | enderlabs/gavl | gavl/parser/tests/test_filter.py | Python | apache-2.0 | 4,642 | [
"VisIt"
] | 42ca1ad1f857b9eeb5233e0469755046f1291008a20b2a0af45abe2c2242c038 |
# Copyright 2002 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
from Bio.config.DBRegistry import CGIDB, DBGroup
from _support import *
from Martel import *
... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/dbdefs/pdb.py | Python | apache-2.0 | 1,473 | [
"Biopython"
] | a8fcb10a01487eb14a5f6ea7f9f12d72bfe81399b34a111e835a57f7d6ac072a |
import numpy as np
import matplotlib.pyplot as plt
from scipy import signal
from scipy.fftpack import fft
fs = 100 # Sample frequency (Hz)
L = 10 # 10 seconds
N = fs*L # Number of samples
t = np.linspace(0, L, num=N, endpoint=False)
noise = np.random.normal(scale=0.5, size=t.shape[0])
sig1 = 1.3*np.sin(2*np.pi*15*t)... | sbobovyc/LabNotes | DSP/gaussian_noise.py | Python | gpl-3.0 | 863 | [
"Gaussian"
] | c93187daebdac0103d882dbfa2485f7b5255d5f09d44140239aaca5423179ba2 |
# This code is so you can run the samples without installing the package
import sys
import os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
#
testinfo = "f 10 0.033, s, f 20 0.033, s, f 30 0.033, s, f 30 0.033, s, q"
tags = "particles, Explosion"
import pyglet
import summa
from summa.director impo... | shackra/thomas-aquinas | tests/test_particle_explosion.py | Python | bsd-3-clause | 954 | [
"Galaxy"
] | 7f386bcb6a2c6a97855d5fcc8c9f68fb3acd8e996abb562ee4aa19e1e423ca59 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# -*- Python -*-
"""
DoCoMoUnderstandingSrv.py
Service Server for DoCoMo SentenceUnderstanding API
The project is hosted on GitHub where your could fork the project or report
issues. Visit https://github.com/roboworks/
:copyright: (c) 2015 by Hiroyuki... | okadahiroyuki/trcp | trcp_chat/nodes/DoCoMoUnderstandingSrv.py | Python | mit | 12,054 | [
"VisIt"
] | 77c5797f2b0b3067082499e8c165ec31bef5f1e72622e02c28d239f730952c80 |
"""
The B{0install remove-feed} command-line interface.
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
syntax = "[INTERFACE] FEED"
from zeroinstall import SafeException, _
from zeroinstall.injector import model, writer
from zeroinstall.cmd import add_feed, U... | dabrahams/zeroinstall | zeroinstall/cmd/remove_feed.py | Python | lgpl-2.1 | 952 | [
"VisIt"
] | bdef460f84970c220c0174152892693d804125fa12bb7f74da953462986ad496 |
#!/usr/bin/env python
"""
Convert from vasprun.xml in DIR direcotry
to erg.ref, frc.ref, and pos files.
Note that reading a lot of vasprun.xml takes a lot of time.
Usage:
vasprun2fp.py [options] DIR [DIR...]
Options:
-h,--help Show this message and exit.
--specorder=SPECORDER
Specify the order of ... | ryokbys/nap | nappy/vasp/vasprun2fp.py | Python | mit | 7,316 | [
"ASE",
"VASP"
] | f720430962a0b6745b3b5993c8ee33be8961a16da1d083e359bc9903297836f0 |
from numpy.random import RandomState
class GGPSampler(object):
r"""Sample from a Generalised Gaussian Process.
Outcome modelled via
.. math::
\mathbf y \sim \int \prod_i \mathrm{ExpFam}(y_i ~|~ g_i(z_i))
\mathcal N(\mathbf z ~|~ \mathbf m; \mathrm K) \mathrm d\mathbf z.
Parameters
... | limix/glimix-core | glimix_core/random/_ggp.py | Python | mit | 1,998 | [
"Gaussian"
] | aa44bfa9f6ace88fd1a665285806f59c4ace4a93033ed69400599522dcac193d |
# -*- coding: utf-8 -*-
import time
from threading import Thread
import redis
import redisco
import unittest
from datetime import date
from redisco import models
from redisco.models.base import Mutex
from dateutil.tz import tzlocal
class Person(models.Model):
first_name = models.CharField()
last_name = models... | heckj/redisco | redisco/models/basetests.py | Python | mit | 39,521 | [
"VisIt"
] | 66ea78b1a7a0dccaf0dee9c8bfec0cc5e61ce9193f7a06bbddd76aa7eacd5e7e |
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/privacy | tensorflow_privacy/privacy/optimizers/dp_optimizer_keras.py | Python | apache-2.0 | 14,994 | [
"Gaussian"
] | 4a602714d0c245e38189e83af5f02ad7cb877b716dadd43a362ca5eee744f95e |
'''
sbclearn (c) University of Manchester 2018
sbclearn is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
# pylint: disable=invalid-name
# pylint: disable=unused-argument
import collections
from sklearn.base import BaseEstimat... | synbiochem/synbiochem-learn | gg_learn/utils/transformer.py | Python | mit | 4,012 | [
"VisIt"
] | 86f12cb1a0074e32043f102746ba7aeaae9fd4c8a9819c08da118cd24308655b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements a core class LammpsData for generating/parsing
LAMMPS data file, and other bridging classes to build LammpsData from
molecules. This module also implements a subclass CombinedData for... | fraricci/pymatgen | pymatgen/io/lammps/data.py | Python | mit | 59,007 | [
"LAMMPS",
"pymatgen"
] | 4a55eab064a50bf4641641355620badb235ccb8b78edf5e3ca49cb2d0f678dd0 |
'''
Created on Sep 4, 2015
@author: Iaroslav Shcherbatyi
'''
import numpy as np
import matplotlib.pyplot as plt
import scipy.optimize as optim
import random as random
Reps = 1 # number of times to repeat the experiment
M = 3 # number of dimensions
Xsz = 100; # number of training instances
Changes = [1,10,100,1000]
... | iaroslav-ai/nn-local-minimum | LocalMinimaDemo/ExperimentsShallowNN.py | Python | mit | 3,520 | [
"NEURON"
] | 3896ac63ef9046bd34931fbea4ae01f3e7c8dab569eba0fe63aae86a26f81793 |
# -*- coding: utf-8 -*-
from .screen import screen, screen_width, screen_height, monitor_diagonal
import os
import pygame
import time as builtin_time
import numpy as np
import datetime
# ==============================================================================
# =================================================... | neuropsychology/Neuropsydia.py | neuropsydia/core.py | Python | mpl-2.0 | 28,818 | [
"Amber"
] | f591472c4170390efcbfd5262968d83c91f5a53ffe0a1eeb05665328b0cc68c5 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright (c) 2015 Jérémie DECOCK (http://www.jdhp.org)
"""
This is the simplest Python GTK+3 LinkButton snippet.
See: http://python-gtk-3-tutorial.readthedocs.org/en/latest/introduction.html
"""
from gi.repository import Gtk as gtk
def main():
window = gtk.Wind... | jeremiedecock/snippets | python/pygtk/python_gtk3_pygobject/link_button.py | Python | mit | 842 | [
"VisIt"
] | 6f0ec4aa50f749214d836826c18ee60e51d1a4932daa71b9c9489954a37c32f8 |
""" """
# modes.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
import os
from collections import namedtuple
from mpf.system.timing import... | jabdoa2/mpf | mpf/media_controller/core/modes.py | Python | mit | 11,399 | [
"Brian"
] | e048a5981037a38cf4c9e4ac41caaac8fc1f681924ad22840e8a24f210b1e0b5 |
# coding=utf-8
# --------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for
# license information.
#
# Code generated by Microsoft (R) AutoRest Code Generator.
# Changes ... | Azure/azure-sdk-for-python | sdk/cognitiveservices/azure-cognitiveservices-vision-customvision/azure/cognitiveservices/vision/customvision/training/models/_models_py3.py | Python | mit | 83,348 | [
"VisIt"
] | 095b7ce2719b975949880475e0142a732b3db2cb35e3b5d818973131bb2e8b31 |
from pype.ast import *
from pype.symtab import *
from pype.lib_import import LibraryImporter
from pype.fgir import FGNodeType, FGNode, Flowgraph, FGIR
from pype.error import *
class SymbolTableVisitor(ASTVisitor):
def __init__(self):
self.symbol_table = SymbolTable()
self.currentComponent = None
def retur... | 207leftovers/cs207project | pype/translate.py | Python | mit | 6,055 | [
"VisIt"
] | 76f44412b069cca4f6d72af65302268da7c21d2462951c01b2dbbc6430e01af9 |
#! /usr/bin/env python
from __future__ import print_function, division
from collections import namedtuple
"""
Copyright (C) 2016 Wesley Fraser (westhefras@gmail.com, @wtfastro)
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
t... | fraserw/PyMOP | trippy/psf.py | Python | gpl-2.0 | 52,063 | [
"Gaussian"
] | 764c74d47c69bd84dabfa03a2a2f0ce1cd25e03d89dfd75c321320c68df0209a |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#===============================================================================
# Copyright (c) 2012 - 2014, GPy authors (see AUTHORS.txt).
# Copyright (c) 2014, James Hensman, Max Zwiessele
# Copyright (c) 2015, Max Zwiessele
#
# All rights reserved.
#
# Redistribution a... | ysekky/GPy | setup.py | Python | bsd-3-clause | 9,169 | [
"Gaussian"
] | 028b0c6a87f1f3b2fab82425d32094b5faa0238294b6d9bf57408632a5485996 |
from __future__ import print_function
from builtins import range
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
import random
def cv_carsGLM():
# read in the dataset and construct training set (and validation set)
cars = h2o.import_file(path=pyunit_utils.locate("smalld... | nilbody/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_DEPRECATED_cv_carsGLM.py | Python | apache-2.0 | 6,421 | [
"Gaussian"
] | 080fba51e726e227f19c8c8785d4ae3c3b9bf65421b36cbbe5995b96c21e4347 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | KaiSzuttor/espresso | testsuite/python/interactions_non-bonded.py | Python | gpl-3.0 | 27,774 | [
"ESPResSo",
"Gaussian"
] | 845ca4db8fb100917b223234b96af9caf07e80a59ba62d21569f0383f430d0aa |
from asyncio import gather, Semaphore, sleep, Task, CancelledError
from datetime import datetime
from statistics import median
from sys import platform
from cyrandom import shuffle
from collections import deque
from itertools import dropwhile
from time import time, monotonic
from aiopogo import HashServer
from sqlalch... | sebast1219/Monocle | monocle/overseer.py | Python | mit | 20,753 | [
"VisIt"
] | 8dff0ff0bec10a0654a8faf3ed77be66a5a1f65ad04d4a158aa017d87055b5b4 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# pylint: skip-file
import os
import sys
from setuptools import find_packages, setup
##### Dependencies of GPflow
# We do not want to install tensorflow in the readthedocs environment, where we
# use autodoc_mock_imports instead. Hence we use this flag to decide whethe... | GPflow/GPflow | setup.py | Python | apache-2.0 | 2,779 | [
"Gaussian"
] | d5f89f146c2842fd347406abea777b15f7d95f1784d139511c9de0518a5fd280 |
#!/usr/bin/env python
"""
Install.py tool to download, unpack, build, and link to the plumed2 library
used to automate the steps described in the README file in this dir
"""
from __future__ import print_function
import sys, os, platform, subprocess, shutil
from argparse import ArgumentParser
sys.path.append('..')
fr... | Pakketeretet2/lammps | lib/plumed/Install.py | Python | gpl-2.0 | 5,336 | [
"LAMMPS"
] | de2a945bd584a5d31f7cf0db55d7074fd3f4259ab4c855b4f0eb5aafb3b14254 |
# Copyright (C) 2012,2013,2015
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of ... | espressopp/espressopp | src/FixedTupleList.py | Python | gpl-3.0 | 1,989 | [
"ESPResSo"
] | 499e3ea93744044522e59c86f2d55958b9e558ff6463d54a56b3c32496099b04 |
"""This demo program solves the incompressible Navier-Stokes equations
on an L-shaped domain using Chorin's splitting method."""
# Copyright (C) 2010-2011 Anders Logg
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Publi... | mathstuf/ParaViewCatalystExampleCode | PythonDolfinExample/simulation-catalyst-step2.py | Python | bsd-3-clause | 5,485 | [
"ParaView",
"VTK"
] | d5cd88f7ef062756b591dffdfffdbd73957105fa90225f3c94f9cdd971b065e1 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import print_function
#
# PCR-GLOBWB (PCRaster Global Water Balance) Global Hydrological Model
#
# Copyright (C) 2016, Edwin H. Sutanudjaja, Rens van Beek, Niko Wanders, Yoshihide Wada,
# Joyce H. C. Bosmans, Niels Drost, Ruud J. van der Ent, Inge E. M. de... | UU-Hydro/PCR-GLOBWB_model | model/virtualOS.py | Python | gpl-3.0 | 98,035 | [
"NetCDF"
] | f6319b51bd318d7b8cdf1b33ece11c597254a0f7ff3b99c4972367303ad0b292 |
# (C) 2017, Markus Wildi, markus.wildi@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distr... | RTS2/rts2 | scripts/u_point/unittest/rts2_environment.py | Python | lgpl-3.0 | 5,725 | [
"VisIt"
] | b4d37e9243f28fd3354ab008f169ae86e0debe71bdb23bdbd3866aa6904e9faa |
r"""OS routines for Mac, NT, or Posix depending on what system we're on.
This exports:
- all functions from posix, nt, os2, mac, or ce, e.g. unlink, stat, etc.
- os.path is one of the modules posixpath, ntpath, or macpath
- os.name is 'posix', 'nt', 'os2', 'mac', 'ce' or 'riscos'
- os.curdir is a string repres... | christer155/Django-facebook | docs/docs_env/Lib/os.py | Python | bsd-3-clause | 24,645 | [
"VisIt"
] | ec3a2b2880c379d8030afc3a67eeb10dba37d13eead1ade43b84a9a69e67a4cf |
# -*- coding: utf-8 -*-
"""
caching of the bibglossaries
Originally adapted from: https://github.com/mcmtroffaes/sphinxcontrib-bibtex
"""
import six
try: # pragma: no cover
from collections import OrderedDict
except ImportError: # pragma: no cover
from ordereddict import OrderedDict
import ast
import colle... | chrisjsewell/ipypublish | ipypublish/sphinx/gls/cache.py | Python | bsd-3-clause | 12,953 | [
"VisIt"
] | 3a4f7cf11ede3fe94ca24d10ffb49ae340eb8f5bb4d488b4d880e5a806cbe95b |
import sys
import copy
import pprint
import pytest
import numpy as np
from utils import *
from addons import *
import qcelemental as qcel
import qcdb
subject1 = """O 0 0 0
no_com
H 1 ,, 0 \t 0 # stuff-n-nonsense"""
ans1 = {'geom': [0., 0., 0., 1., 0., 0.],
'elbl': ['O', 'H'],
'fix_com': True,... | CDSherrill/psi4 | psi4/driver/qcdb/pytest/test_from_string.py | Python | lgpl-3.0 | 38,751 | [
"Psi4"
] | 57cd8fd4a422575426f7cb76149621936271ce8336dcc98cfc42bf3300b0526f |
from module_base import ModuleBase
from module_mixins import ScriptedConfigModuleMixin
import module_utils
import vtk
class contour(ScriptedConfigModuleMixin, ModuleBase):
def __init__(self, module_manager):
# call parent constructor
ModuleBase.__init__(self, module_manager)
self._conto... | chrisidefix/devide | modules/filters/contour.py | Python | bsd-3-clause | 2,032 | [
"VTK"
] | 24567ab3bf9f937cd4b4cd55e390015687e6466d59df5361cd07244204f3a750 |
# This module provides color definitions for use in Visualization.
#
# Written by: Konrad Hinsen <hinsen@cnrs-orleans.fr>
# Last revision: 1999-7-23
#
"""This module provides color definitions that are used in the modules
VRML, VRML2, and VMD.
"""
import Numeric, string
#
# Colors
#
class Color:
"""RGB Color sp... | OS2World/DEV-PYTHON-UTIL-ScientificPython | src/Lib/site-packages/Scientific/Visualization/Color.py | Python | isc | 4,647 | [
"VMD"
] | 2737d20fcd9aa9385e87a48b64fec907cece8ee9ad4b5a08a4ccc695f768d141 |
import logging
import george
import numpy as np
from scipy import optimize
from robo.util import normalization
from robo.models.base_model import BaseModel
logger = logging.getLogger(__name__)
class GaussianProcess(BaseModel):
def __init__(self, kernel, prior=None,
noise=1e-3, use_gradients=... | numairmansur/RoBO | robo/models/gaussian_process.py | Python | bsd-3-clause | 11,571 | [
"Gaussian"
] | b20a5e6fb39c2bc38d082d42027389f8b921548b0fa2f2e81f4f9d931a234c02 |
#!/usr/bin/env python
import os, re, sys
import readVasp
import ScanOutcar
import numpy as np
#====================================================================
def badparms( msg):
print '\nError: %s' % (msg,)
print 'Parms:'
print ' -bugLev <int> debug level'
print ' -readType <string> outca... | ssullivangh/nrelmat | nrelmat/ScanOutcarTesta.py | Python | gpl-3.0 | 5,092 | [
"VASP"
] | 93532cc2d6b1ca9a80f094e4939eac746f3e4e8554f49084615964a0c627d158 |
"""
Quantum dynamics simulation with Crank Nicolson method
"""
from QD.dynamics import CrankNicolson
import numpy as np
# Parameters
a = 0.5 # Spatial resolution
L = 100 # Domain size
sigma = 9.5 # Wave function shape
k = 0.8*(2*np.pi)/a # Wave vector
mu = 15 ... | dbouman1/iccp-assignment-3 | main.py | Python | mit | 740 | [
"Gaussian"
] | 2415ff3c60d787c438e47703def3d856aa1551dbe97380d506c726149bf64b61 |
#!/usr/bin/env python
#
# Buildfarm client for PostgreSQL and Greenplum
#
# written by: Andreas Scherbaum <ascherbaum@pivotal.io>
# Andreas Scherbaum <ads@pgug.de>
#
import re
import os
import sys
import logging
import tempfile
import atexit
import shutil
import time
import subprocess
from subprocess impor... | andreasscherbaum/buildfarm-client | buildclient.py | Python | bsd-3-clause | 29,338 | [
"ORCA"
] | 654aa98f295d0e02688d42052643c3349d43f0ba26b04b872d32e764eeee0630 |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/test/zoo/orca/automl/autoestimator/test_autoestimator_keras.py | Python | apache-2.0 | 5,054 | [
"ORCA"
] | 72ae90f60556ed9e3ac46746b60f652a244a76ad4348b620c92234c21af919f8 |
# -*- coding: utf-8 -*-
# This file is part of Viper - https://github.com/viper-framework/viper
# See the file 'LICENSE' for copying permission.
import os
import re
import string
from socket import inet_pton, AF_INET6, error as socket_error
from viper.common.abstracts import Module
from viper.common.objects import Fi... | kevthehermit/viper | viper/modules/strings.py | Python | bsd-3-clause | 13,867 | [
"Brian"
] | 30417a4c80b4076553c55d4e84a0cfc021aa80c52e78b05c6342629810ed5443 |
#
# @BEGIN LICENSE
#
# QCDB: quantum chemistry common driver and databases
#
# Copyright (c) 2011-2017 The QCDB Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of QCDB.
#
# QCDB is free software; you can redistribute it and/or modify
# it ... | loriab/qcdb | qcdb/inputparser.py | Python | lgpl-3.0 | 29,904 | [
"CFOUR",
"Psi4"
] | 773d4a98c3b7349363bfafea0756eb7ed479a715fd2efae5668550ea2433b804 |
import urllib
import re
class GitHg(object):
"""Class that handles various aspects of converting a hg commit to git.
"""
def __init__(self, warn):
"""Initializes a new GitHg object with the specified warner.
"""
self.warn = warn
def format_timezone(self, offset):
if o... | gktomar/gaurav | git_remote_helpers/hg/hg.py | Python | gpl-2.0 | 4,072 | [
"Octopus"
] | 9ec39d71b4bffe6da84b0dcc60f72899109cdfcf9dad0f13c005a2e904b0eb84 |
#
# $Id: tex2libplot.py,v 1.5 2002/08/18 22:04:07 mrnolta Exp $
#
# Copyright (C) 2000 Mike Nolta <mike@nolta.net>
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the Lic... | kstory8/biggles | biggles/libplot/tex2libplot.py | Python | gpl-2.0 | 16,267 | [
"Bowtie"
] | 7ad2068f19d9ce7430accaaceef348bd96800d5f2194ee6fe96c45aec3581eae |
#!/bin/env python2
'''
CalcuMLator testing file
Copyright (C) 2016 Luiz Eduardo Amaral <luizamaral306@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(... | ArmlessJohn404/calcuMLator | calcuMLator/estimate.py | Python | gpl-3.0 | 2,928 | [
"Gaussian"
] | 42849737140c6a35e21427d7f89f522553d0a9b4f629e0944439f3cbf3b9dd0a |
#!/usr/bin/env python3
# Copyright (c) 2019 The ungoogled-chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""
Update binary pruning and domain substitution lists automatically.
It will download and unpack into the source tree... | Eloston/ungoogled-chromium | devutils/update_lists.py | Python | bsd-3-clause | 14,456 | [
"xTB"
] | b1986a3b5ffb947561e65bcb590ef85f8d52ffbd0597b624407546d22406eab4 |
#!/usr/bin/python
# -*- coding: UTF-8 -*-
from np import Neuron
t = [[ [0,0],
[0,1],
[1,0],
[1,1]],
[0,1,1,0]]
learning_rate = 0.5
max_epocas = 200
max_erro = 0.01
curr_erro = 100
curr_epoca = 1
# Instancia os neurônios que serão utilizados.
ne0 = Neuron({"inputs":t[0][0]})
nh0, nh1 =... | aulusdiniz/neuron | neuropy/net.py | Python | mit | 1,536 | [
"NEURON"
] | 3c244ce0d0d9aebf1aed1cabf876c43d51f8befa683e69bf5abe0b0955678bfe |
"""
Student Views
"""
import datetime
import logging
import uuid
import json
import warnings
import jwt
from collections import defaultdict
from urlparse import urljoin
from pytz import UTC
from requests import HTTPError
from django.conf import settings
from django.contrib.auth import logout, authenticate, login
fro... | Edraak/edx-platform | common/djangoapps/student/views.py | Python | agpl-3.0 | 99,571 | [
"VisIt"
] | ca60be5f0cfbf6301e5e39be4703483312cb2a6e19f8d8c7b20f032dfc355c57 |
"""
:mod: ReqClient
.. module: ReqClient
:synopsis: implementation of client for RequestDB using DISET framework
"""
import os
import time
import random
import json
import datetime
# # from DIRAC
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.Core.Utilities.... | andresailer/DIRAC | RequestManagementSystem/Client/ReqClient.py | Python | gpl-3.0 | 24,299 | [
"DIRAC"
] | eb4e8cbd7a46bdf08fab6126998b330cd547ae9f6d1ac71fe1af335344bda65c |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | psci2195/espresso-ffans | doc/tutorials/04-lattice_boltzmann/scripts/04-lattice_boltzmann_part3_solution.py | Python | gpl-3.0 | 4,003 | [
"ESPResSo"
] | c74d4b2cdb057f10bc515ea9eb6ced274937d2a8df73c3b86b4ad2b87ef74e16 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
from __future__ import (absolute_import, divi... | mganeva/mantid | Framework/PythonInterface/plugins/algorithms/FitGaussian.py | Python | gpl-3.0 | 4,364 | [
"Gaussian"
] | bf9f2dcc3d77f6c3c676b0f3cd959306bca8ccbdc92b9c271c434e1351089281 |
#!/usr/bin/env python
# -*- coding : utf-8 -*-
#
# This file is part of the Siesta help scripts
#
# (c) Andrey Sobolev, 2013
#
import numpy as np
import matplotlib.pyplot as plt
from shs.calc import SiestaCalc
if __name__== '__main__':
calc_dir = '../../examples/FeCANI'
crd = []
forces = []
nste... | ansobolev/shs | bin/additional/forces.py | Python | mit | 2,076 | [
"SIESTA"
] | f42fadd371e39fc245f6b7438fdd12655f6bda93dbf7afe339502da33a15781e |
from random import randint, uniform, random, gauss
from MemoizationUtils import get_random_protocol
class ParamVector(object):
"""
This class represents the vectors that defines a firewall
a ParamVector is a class that represents a vector that defines a firewall.
we have our indicator functions that s... | LeonAgmonNacht/Genetic-Algorithm-Firewall-TAU | ParamVector.py | Python | mit | 11,886 | [
"Gaussian"
] | b474129406377f4c535a8e395674b6bdf83e16b90c348018efa779bf6bee7da5 |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
"""Implements ThreadPoolExecutor."""
__author__ = 'Brian Quinlan (brian@sweetapp.com)'
import atexit
from concurrent.futures import _base
import queue
import threading
import weakref
import os
# Workers are created... | Microvellum/Fluid-Designer | win64-vc/2.78/python/lib/concurrent/futures/thread.py | Python | gpl-3.0 | 4,865 | [
"Brian"
] | 26c226308838b367402efc915ffaec9b8d1ff4d3de45c581f14f8fadd3bfee54 |
"""
Utility functions for cloud endpoints.
"""
import sys
import os
import six
from DIRAC import S_OK, S_ERROR
from email.mime.text import MIMEText
from email.mime.multipart import MIMEMultipart
STATE_MAP = {
0: "RUNNING",
1: "REBOOTING",
2: "TERMINATED",
3: "PENDING",
4: "UNKNOWN",
5: "STOPPE... | DIRACGrid/DIRAC | src/DIRAC/Resources/Cloud/Utilities.py | Python | gpl-3.0 | 10,256 | [
"DIRAC"
] | 6014c1bde55eca7b0ab408748f201c6d710c8f24da5aa514ff1bad05d608b14b |
# Copyright 2012, 2013 by the Micromagnum authors.
#
# This file is part of MicroMagnum.
#
# MicroMagnum is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) a... | MicroMagnum/MicroMagnum | src/magnum/micromagnetics/stephandler/vtk_storage.py | Python | gpl-3.0 | 2,464 | [
"VTK"
] | 580b644fd95bf8b15d47f77ee877fc021bc41f3c80dc8d5385b4b9c1ec2c50e4 |
"""
@name: PyHouse/src/Modules/Communication/_test/test_phone.py
@author: D. Brian Kimmel
@contact: d.briankimmel@gmail.com
@copyright: 2016-2017 by D. Brian Kimmel
@date: Created on May 30, 2016
@licencse: MIT License
@summary:
"""
import unittest
class Test(unittest.TestCase):
def setUp... | DBrianKimmel/PyHouse | Project/src/Modules/Computer/Communication/_test/test_phone.py | Python | mit | 532 | [
"Brian"
] | 18b56758fe1a45df594091d1cc3e3ef143cc69fa98926693f41b605fc77740df |
"""
============
constants.py
============
Physical constants for astronomy & astrophysics
Classes
=======
Constant:
Defines a physical constant for use in astronomical or physical computation.
A Constant instance is defined by its value, description, and units attributes.
"""
class Constant(float):
"... | NuGrid/NuGridPy | nugridpy/constants.py | Python | bsd-3-clause | 5,488 | [
"Avogadro"
] | e605676f1f24560978620c8826fbb0fc2b60b5dd51515233cb034eb82de4a623 |
#
# A file that opens the neuroConstruct project LarkumEtAl2009 and run multiple simulations stimulating ech terminal apical branch with varying number of synapses.
#
# Author: Matteo Farinella
from sys import *
from java.io import File
from java.lang import System
from java.util import ArrayList
from uc... | pgleeson/TestArea | models/LarkumEtAl2009/pythonScripts/PAP_multibranches_inhibition100ms.py | Python | gpl-2.0 | 22,071 | [
"NEURON"
] | 3feca849006afc0c6b345fd81d51c8d48722163dffcd2e34d57dc96bafef1b4d |
# Copyright 2001 by Gavin E. Crooks. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Unit test for Hie"""
import unittest
from Bio.SCOP import Hie
class HieTests(unittes... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_SCOP_Hie.py | Python | gpl-2.0 | 1,413 | [
"Biopython"
] | 42d1745ff0eed36e35773f84b183e0ff17823de5e068d69287e7d2a3368438e3 |
"""Utility functions for printing version information."""
import importlib
import locale
import os
import platform
import struct
import subprocess
import sys
def get_sys_info():
"""Returns system information as a dict"""
blob = []
# get full commit hash
commit = None
if os.path.isdir(".git") and... | pydata/xarray | xarray/util/print_versions.py | Python | apache-2.0 | 5,145 | [
"NetCDF"
] | 912aa587472b9e91336a7858995dc5ed1b86132b3c9eb3a133f61ffe2ec3edb3 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import numpy as np
import astropy.units as u
from astropy.extern import six
from astropy import log
import warnings
from .extern.validator import ... | cdeil/naima | naima/utils.py | Python | bsd-3-clause | 14,921 | [
"Gaussian"
] | 3ef60987d1fdb3849257b3be1b63baf009ab517e8a4f60fa6f9b057395f71dc3 |
#!/usr/bin/env python
"""
Copyright (c) 2014-2015 Miroslav Stampar (@stamparm)
See the file 'LICENSE' for copying permission
"""
import sys
PYVERSION = sys.version.split()[0]
if PYVERSION >= "3" or PYVERSION < "2.6":
exit("[CRITICAL] incompatible Python version detected ('%s'). For successfully running Maltrail... | hxp2k6/https-github.com-stamparm-maltrail | core/versioncheck.py | Python | mit | 415 | [
"VisIt"
] | 60830bf8b3f186e26d13b268bffa68d0204db746570025017dd008dc9a840d83 |
#
# tsne.py
#
# Implementation of t-SNE in Python. The implementation was tested on Python 2.5.1, and it requires a working
# installation of NumPy. The implementation comes with an example on the MNIST dataset. In order to plot the
# results of this example, a working installation of matplotlib is required.
# The ... | robinjia/cgpotts-cs224u | tsne.py | Python | gpl-2.0 | 5,249 | [
"Gaussian"
] | 0f380d834cfb2f654bbd15980e94ef570a2f0cff86261ee014226f568c8ef742 |
# module pyparsing.py
#
# Copyright (c) 2003-2021 Paul T. McGuire
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, cop... | JonnyWong16/plexpy | lib/pyparsing/__init__.py | Python | gpl-3.0 | 9,095 | [
"VisIt"
] | dcff933662b1fc7fff62093df0209930bfe4b263ebe597929218a02fa47350f4 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
import re
import numpy as np
from mantid.api ... | mganeva/mantid | Framework/PythonInterface/plugins/algorithms/SaveReflections.py | Python | gpl-3.0 | 10,638 | [
"CRYSTAL"
] | deee178641315d3673a194d3f09da6fc81c9a4c3e85e110fb687b6448aa3c412 |
#!/bin/env python
"""
ec2-init.py
---------------------------
Initialize Amazon EC2 Host
Brian Parsons <brian@pmex.com>
Features:
-------------
Sets hostname based on instance user-data hostname
Sends email with hostname, instance type, and IP address
Will update DNS in Route53 if boto finds credentials or has IAM ... | bparsons/ec2-init | ec2-init.py | Python | mit | 9,935 | [
"Brian"
] | 3684bf9f2868f3af40990465921ba3d2feb3e877b75d99298a49e9c1f3fa5a3a |
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