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# Copyright (c) 2017-2019 Uber Technologies, Inc.
# SPDX-License-Identifier: Apache-2.0
import torch
import torch.nn as nn
from torch.distributions import MultivariateNormal, constraints
import pyro.distributions as dist
from pyro.contrib.timeseries.base import TimeSeriesModel
from pyro.nn import PyroParam, pyro_meth... | uber/pyro | pyro/contrib/timeseries/lgssmgp.py | Python | apache-2.0 | 11,250 | [
"Gaussian"
] | 4ff8cb91bbfac93980f0777b68374e2a9dd7c37ae6cd54fd20f0c143adb156e3 |
# -*- coding: utf-8 -*-
'''
Copyright (c) 2015 by Tobias Houska
This file is part of Statistical Parameter Estimation Tool (SPOTPY).
:author: Tobias Houska
Implements a variant of DE-MC_Z. The sampler is a multi-chain sampler that
proposal states based on the differences between random past states.
The sampler does ... | p-lauer/spotpy | spotpy/algorithms/demcz.py | Python | mit | 26,423 | [
"Gaussian"
] | ea5db8f08c86320a3e44b0a6f9e1f11d58c6eb952bc5cc8a4f8234f8bf6e5a9f |
"""
Test basic molecular features.
"""
import numpy as np
import unittest
from deepchem.feat.basic import MolecularWeight, RDKitDescriptors
class TestMolecularWeight(unittest.TestCase):
"""
Test MolecularWeight.
"""
def setUp(self):
"""
Set up tests.
"""
smiles = 'CC(=O)OC1=CC=CC=C1C(=O)O'
... | ktaneishi/deepchem | deepchem/feat/tests/test_basic.py | Python | mit | 1,069 | [
"RDKit"
] | be0de9afe20b68ec85221ed506fa72a01805ac29920612583c593fe0225658cb |
"""
Add UUIDs to workflows
"""
from sqlalchemy import *
from sqlalchemy.orm import *
from migrate import *
from migrate.changeset import *
from galaxy.model.custom_types import UUIDType, TrimmedString
import logging
log = logging.getLogger( __name__ )
metadata = MetaData()
"""
Because both workflow and job reques... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/model/migrate/versions/0121_workflow_uuids.py | Python | gpl-3.0 | 1,498 | [
"Galaxy"
] | 7c1ee223c4a3fc00e1334d6697e698a31c67b37e91a2de3b7a7eba4de9784fa9 |
#!/usr/bin/env python
'''VIC testing command line interface'''
from __future__ import print_function
import os
import argparse
from collections import namedtuple
import psutil
import string
import subprocess
from subprocess import check_call
import datetime
import getpass
import socket
import time
import numpy as np
... | dgergel/VIC | tests/run_profiling.py | Python | gpl-2.0 | 9,136 | [
"NetCDF"
] | a3b9ac16f08ea190bb63b3a937172c3314331e37963e9da1e7b862f7a57ef445 |
#!/usr/bin/python
"""
Python source code - Reads a file containing item stats in base 'identify' format,
splits it into appropriate variables, and stores them in the stat DB
"""
import sys
import psycopg2
import locale
import re
from optparse import OptionParser # replace with argparse in 2.7
from datetime import dat... | grokh/torilbot | parseStats.py | Python | mit | 26,337 | [
"CRYSTAL"
] | a44730cd12150c3afaa78b8991f05678fff7f2e49824fbdc6ba3eb638d5c0440 |
#!/opt/anaconda1anaconda2anaconda3/bin/python
from __future__ import print_function
import os
import sys
import argparse
from argparse import RawTextHelpFormatter
parser = argparse.ArgumentParser(description="Build and Run path advisor for Psi4",
formatter_class=RawTextHelpFormatter)
... | psi4/psi4meta | conda-recipes/psi4-dev/src/psi4-path-advisor.py | Python | gpl-2.0 | 5,808 | [
"Psi4"
] | bb5044f6c84c634369ce46226ceb0bc7ccd0c46175ebdcb4e2074f368245b5d1 |
import contextlib
import gzip
import itertools
import math
import os.path
import pickle
import re
import shutil
import sys
import tempfile
import warnings
from contextlib import ExitStack
from io import BytesIO
from pathlib import Path
from typing import Optional
import numpy as np
import pandas as pd
import pytest
fr... | pydata/xarray | xarray/tests/test_backends.py | Python | apache-2.0 | 214,655 | [
"NetCDF"
] | 629a75d3acb00fbbac22b59ef9d0a4d5613054346a64f75eb2ddc841a576c60b |
#!/usr/bin/env python
"""
Support for uframe stream route(s), utilized for stream information.
"""
__author__ = 'Edna Donoughe'
from flask import (jsonify, request, current_app)
from ooiservices.app import db
from ooiservices.app.uframe import uframe as api
from ooiservices.app.main.errors import (internal_server_er... | asascience-open/ooi-ui-services | ooiservices/app/uframe/streams.py | Python | apache-2.0 | 17,509 | [
"NetCDF"
] | ffcf238308ca5bd26a470b2ad25834f1803a4c51b335dc8fd3e09a0b113ca51b |
#!/usr/bin/env python
"""
Generate the images and rst files for gallery of SfePy examples.
The following steps need to be made to regenerate the documentation with the
updated example files:
1. Generate the files:
- for sfepy.org deployment::
$ ./script/gen_gallery.py -l ../doc-devel
- for local test bu... | lokik/sfepy | script/gen_gallery.py | Python | bsd-3-clause | 21,255 | [
"VTK"
] | b7209a82b9fca0e8d425bdb8210bab0e1b3160c0b6ce94bd7351bb8dbd62eff2 |
import cgi
import json
import os
import posixpath
import shutil
import tempfile
from urllib.parse import urlparse
from apistar.compat import DownloadedFile
class BaseDecoder:
media_type = None
def decode(self, bytestring, **options):
raise NotImplementedError()
class JSONDecoder(BaseDecoder):
... | tomchristie/apistar | apistar/client/decoders.py | Python | bsd-3-clause | 7,825 | [
"NetCDF"
] | ecf5f34da12962a56d62e4e2c0cac03d4dcf677e3c5b93688dd04c10d4b6fb57 |
"""
Support for control of ElkM1 sensors.
For more details about this platform, please refer to the documentation at
https://home-assistant.io/components/sensor.elkm1/
"""
from homeassistant.components.elkm1 import (
DOMAIN as ELK_DOMAIN, create_elk_entities, ElkEntity)
DEPENDENCIES = [ELK_DOMAIN]
async def asy... | tinloaf/home-assistant | homeassistant/components/sensor/elkm1.py | Python | apache-2.0 | 7,872 | [
"Elk"
] | 27365069ee26b8ae48381e10142fde6850e74e35678770939a46c4abb45a5458 |
# noqa: D100
import base64
import collections
import keyword
import re
from pathlib import Path
from urllib.parse import urlparse
# These mimetypes will be encoded in base64 when embedded in requests.
# I'm sure there is a more elegant solution than this... https://pypi.org/project/binaryornot/ ?
BINARY_MIMETYPES = [... | bird-house/birdy | birdy/utils.py | Python | apache-2.0 | 5,856 | [
"NetCDF"
] | b5b5e8e58c7a27c6489d856033b13e737a4f03106478e5be471692a1e147a01f |
"""
This module contains functions related to the calculation of powder diffraction
patterns from area detector data.
"""
import numpy.ma as ma
from scipy.interpolate import griddata
import itertools
import numpy as np
from scipy.ndimage.filters import gaussian_filter
import utils
from output import log
import config... | hoidn/LCLS | dataccess/dataccess/geometry.py | Python | gpl-3.0 | 15,603 | [
"Gaussian"
] | 2e79a715b25e14da09d203476f26b9827cc674caf833fbf8d58e846dcaf9c797 |
"""
Tests for ConvMolFeaturizer.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
__author__ = "Han Altae-Tran and Bharath Ramsundar"
__copyright__ = "Copyright 2016, Stanford University"
__license__ = "GPL"
import unittest
import os
import sys
import ... | bowenliu16/deepchem | deepchem/feat/tests/test_graph_features.py | Python | gpl-3.0 | 4,376 | [
"RDKit"
] | d6bc919f372734c659685e59c9b54f4ecaf070a5fe9f4b9f8a59ea37c1bf885f |
#!/usr/bin/env python
# This file is part of Androguard.
#
# Copyright (c) 2012 Geoffroy Gueguen <geoffroy.gueguen@gmail.com>
# All Rights Reserved.
#
# Androguard is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Fo... | xtiankisutsa/MARA_Framework | tools/androguard/demos/dad_emul.py | Python | lgpl-3.0 | 5,275 | [
"VisIt"
] | 9f45a55c42aef2e26f92f95488902040bc689337162271bc6fcaec290f28b8a1 |
"""
Module to hold a RecipeTable class.
"""
import math
import warnings
import random
import pickle
import scipy.sparse as sparse
from tqdm import tqdm
import myio.myio as myio
import statistics.cluster as cluster
import chef_global.debug as debug
class RecipeTable:
"""
A class to hold all of the recipes.
... | MaxStrange/swedish_chef | statistics/recipe_table.py | Python | apache-2.0 | 6,856 | [
"Gaussian"
] | 29ea11c035e590102a6bd8ce7dc381c4580357da90967205069985f5b55bb4dc |
"""
This is a procedural interface to the matplotlib object-oriented
plotting library.
The following plotting commands are provided; the majority have
Matlab(TM) analogs and similar argument.
_Plotting commands
acorr - plot the autocorrelation function
annotate - annotate something in the figure
arrow ... | tkaitchuck/nupic | external/linux64/lib/python2.6/site-packages/matplotlib/pylab.py | Python | gpl-3.0 | 10,245 | [
"Gaussian"
] | 0f447994286e8380c22b7bc288aea50c5f4a8e7d7eadc370eddce12c94a48945 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# (c) 2015 Toshio Kuratomi <tkuratomi@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | Censio/ansible-dev | lib/ansible/executor/module_common.py | Python | gpl-3.0 | 33,971 | [
"VisIt"
] | 52ad4f408280d4bd7805225da8bba0b183a942c36c90d6916d08976135f4eba3 |
#
# @file TestCVTerms_newSetters.py
# @brief CVTerms unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Sarah Keating
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file loc... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/annotation/TestCVTerms_newSetters.py | Python | bsd-3-clause | 6,074 | [
"VisIt"
] | dc1984d8b5366f5ca32322ab42e523dd2027d7d2cb25dad8c6500ea7455d7ef5 |
# Parsing congress.gov/members/
import requests
from lxml import html
from lxml.html import fromstring
# FIRST: Get Senators and Reps's websites.
# create dictionary
takeadict = []
# get info from website
page = requests.get('https://www.congress.gov/members?pageSize=250&q={"congress":"115"}')
tree = html.fromstrin... | walke469/spartahack-17 | parsingstep2forreal.py | Python | bsd-2-clause | 2,479 | [
"VisIt"
] | f937c757d189d4eaaff47ab296e271ba3b0ef903ae3bcfd24ca1213a2546f2fb |
from pathlib import Path
import json
import numpy as np
import pytest
import psi4
from psi4.driver.procrouting.response.scf_response import tdscf_excitations
from .utils import *
## marks
# reference type
UHF = pytest.mark.unrestricted
RHF_singlet = pytest.mark.restricted_singlet
RHF_triplet = pytest.mark.restricted... | jgonthier/psi4 | tests/pytests/test_tdscf_excitations.py | Python | lgpl-3.0 | 13,651 | [
"Psi4"
] | 899b434e607ef809674f54bb917ba8a5d72ee9d0b8b673bf2160ac6e6dbaf625 |
"""
Constructive Solid Geometry file formats.
"""
from galaxy.datatypes import data
from galaxy.datatypes.binary import Binary
from galaxy.datatypes.data import get_file_peek
from galaxy.datatypes.data import nice_size
from galaxy.datatypes.metadata import MetadataElement
from galaxy import util
MAX_HEADER_LINES = 500... | icaoberg/cellorganizer-galaxy-tools | datatypes/constructive_solid_geometry.py | Python | gpl-3.0 | 21,604 | [
"Galaxy",
"VTK"
] | 2378c2cf3213ada19e05778e2dd8c2ebb1db84ebda6e62cf174bb14d032dc1cc |
""" Just an utilities collector
"""
import types
from DIRAC import S_OK, S_ERROR
def checkArgumentFormat( path ):
""" returns {'/this/is/an/lfn.1':False, '/this/is/an/lfn.2':False ...}
"""
if type( path ) in types.StringTypes:
return S_OK( {path:False} )
elif type( path ) == types.ListType:
return S... | sposs/DIRAC | Resources/Utilities/Utils.py | Python | gpl-3.0 | 577 | [
"DIRAC"
] | 02fefa2c3e8d1fcaa1c428ad340595ecd0d9bec23db9526501d5fe0e08a3d9c2 |
"""
View for Courseware Index
"""
# pylint: disable=attribute-defined-outside-init
import logging
import urllib
from django.conf import settings
from django.contrib.auth.models import User
from django.contrib.auth.views import redirect_to_login
from django.core.urlresolvers import reverse
from django.http import Htt... | lduarte1991/edx-platform | lms/djangoapps/courseware/views/index.py | Python | agpl-3.0 | 23,622 | [
"VisIt"
] | 3a208cc52c8989eb909364497485cc2b38a88b2a8df1e90ea5ccaa707f293ab7 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under the GNU Public ... | kain88-de/mdanalysis | package/MDAnalysis/analysis/distances.py | Python | gpl-2.0 | 7,523 | [
"MDAnalysis"
] | 6bbf768b2b6183ee4c2cfc8956e6f00cea1cfb76e20190ee34d7ce14093b17e1 |
""" The FileCatalogClient is a class representing the client of the DIRAC File Catalog
"""
import os
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.DISET.TransferClient import TransferClient
from DIRAC.Core.Security.ProxyInfo import getVOfromProxyGroup
from DIRAC.ConfigurationSystem.Client.Helpers.Registry import g... | fstagni/DIRAC | Resources/Catalog/FileCatalogClient.py | Python | gpl-3.0 | 24,110 | [
"DIRAC"
] | 7db9c339d5010fcd9ce655d50d8fa2b5be87f8cf5a25a0325013672f6fb97bc9 |
import openbabel as ob
import pybel
import sys
import logging
import os
import subprocess
import time
import sqlite3
import numpy as np
np.set_printoptions(threshold=np.inf, linewidth=150)
from GaussianHelper import *
from collections import deque, defaultdict
from seam_ts_search import *
def printMol(mol,fileFormat =... | sxhexe/reaction-route-search | reactionroute_web/reaction/search/reactionroute.py | Python | mit | 77,435 | [
"Gaussian",
"PyMOL",
"Pybel"
] | e7f263812c68cfda525a5fb093a19500b292177c37ebeae21ae0a8e53f34c9bf |
# -*- coding: utf-8 -*-
from kivy.lang import Builder
from kivy.uix.modalview import ModalView
from kivy.uix.floatlayout import FloatLayout
from kivy.uix.boxlayout import BoxLayout
from kivymd.button import MDFlatButton, MDIconButton
from kivymd.theming import ThemableBehavior
from kivymd.elevationbehavior import Elev... | PeterSurda/PyBitmessage | src/kivymd/theme_picker.py | Python | mit | 18,042 | [
"Amber"
] | d309bbdf22d64b0f395dae6da46f9b80daac31d1feb83519ed5694a245de6688 |
# This script contains the functions used for drawing the programs output images. The functions are called from graphic-output.py when they are needed.
import argparse, math
from PIL import Image, ImageDraw, ImageFont, ImageOps
from StringIO import StringIO
#Common arguments
parser = argparse.ArgumentParser()
parse... | davidwilson-85/easymap | graphic_output/draw.py | Python | gpl-3.0 | 62,463 | [
"Biopython"
] | aed775cb38b22673eeed5832322cb605b28c49d1e013a8f677c9da02a513ee9c |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#
# Author: Matteo Giantomassi <matteo.giantomassiNOSPAM AT uclouvain.be>
# Date: October 11, 2016
from spack import *
c... | LLNL/spack | var/spack/repos/builtin/packages/abinit/package.py | Python | lgpl-2.1 | 10,975 | [
"ABINIT",
"NetCDF",
"Wannier90"
] | eaf29bd1ee9e2f05b9653dfee78d16c359544f0ac2e54dde7f07567cbc771ba1 |
"""
Verify the validity of IR.
"""
from __future__ import print_function, division, absolute_import
import functools
from .types import (Boolean, Integral, Real, Array, Struct, Pointer,
Vector, resolve_typedef)
from .ir import Function, Block, Value, Operation, Constant
from .traversal import vis... | FrancescAlted/blaze | blaze/compute/air/verification.py | Python | bsd-3-clause | 6,458 | [
"VisIt"
] | 7f0cbbe429575b4317976efbd897fd48f72ad3a18eb05474fba801027cba834c |
# Author: Prabhu Ramachandran <prabhu_r at users dot sf dot net>
# Copyright (c) 2006, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance
from tvtk.api import tvtk
# Local imports
from mayavi.filters.filter_base import FilterBase
from mayavi.core.pipeline_info import Pi... | dmsurti/mayavi | mayavi/filters/delaunay3d.py | Python | bsd-3-clause | 1,240 | [
"Mayavi"
] | bfeca808b04246648bafc3846e75b0e180b5eb54d4020d1cee7a72be8326f964 |
"""
Alpha diversity measures (:mod:`skbio.diversity.alpha`)
=======================================================
.. currentmodule:: skbio.diversity.alpha
This package provides implementations of various alpha diversity measures,
including measures of richness, dominance, and evenness. Some functions
generate confi... | SamStudio8/scikit-bio | skbio/diversity/alpha/__init__.py | Python | bsd-3-clause | 6,544 | [
"scikit-bio"
] | 55dd1c7127d6b27992374f08e66bdaeaa57d03c6e68010dc7906f2ff09ec10a2 |
import _thread as thread
import os
import platform
import tempfile
import time
from logging import getLogger
from subprocess import Popen
from pulsar.managers import status
from pulsar.managers.base.directory import DirectoryBaseManager
from .util import kill_pid
log = getLogger(__name__)
JOB_FILE_SUBMITTED = "submi... | galaxyproject/pulsar | pulsar/managers/unqueued.py | Python | apache-2.0 | 9,371 | [
"Galaxy"
] | c0f01d847ea8af552fa1f4177a1e22338e5766d927fd61b6cc8f7725107869b5 |
"""In-memory representation of interfaces and other data structures.
The objects in this module are used to build a representation of an XML interface
file in memory.
@see: L{reader} constructs these data-structures
@see: U{http://0install.net/interface-spec.html} description of the domain model
@var defaults: Defau... | timdiels/0install | zeroinstall/injector/model.py | Python | lgpl-2.1 | 49,858 | [
"VisIt"
] | 3ffe0e293d45d612d1ff0782eebf7b917fecf4e39448a0a25037f16ff6566191 |
'''Usage:
python monthly_visits.py <project_label>
This is sort of a contrived example meant to display different features.
'''
from scitran_client import ScitranClient, query, Projects
import sys
from collections import Counter
from fnmatch import fnmatch
client = ScitranClient()
# Search for the project via label... | scitran/python-client | examples/monthly_visits.py | Python | gpl-3.0 | 1,214 | [
"VisIt"
] | c3c85d8996a9d353674e8c2cf08b51851017e25a1e75e65162659db8d13508c7 |
#!/usr/bin/env python
# -*- coding:utf-8 -*-
####################################################################################################
#
# Author: WishInLife
# QQ: 57956720
# QQ Group: 59160264
# E-Mail: wishinlife@qq.com
# Web Home: http://www.syncy.cn
# Update date: 2015-09-12
# VERSION: 2.5.3
# Re... | openwrt-stuff/openwrt-extra | luci/applications/luci-syncy/root/usr/bin/syncy.py | Python | gpl-2.0 | 130,044 | [
"VisIt"
] | 833c06a2c73989aa1cde78014dc87d47670f6e4e22423b5d5a9bb6e4c80b521b |
'''
Filters for preprocessing lingual ultrasound data for dimensionality reduction.
TODO: include generalized dimensionality reduction utilities here.
'''
import numpy as np
from scipy.ndimage import median_filter
from scipy.ndimage.filters import gaussian_laplace
def normalize(frame):
"""
Normalize input ... | mfaytak/image-pca | imgphon/ultrasound.py | Python | bsd-2-clause | 7,181 | [
"Gaussian"
] | 48680df857d571e7f1088d007f51f204ebef2c43c706ace446ccc4e1f3e47981 |
__author__ = "Rick Sherman"
import unittest2 as unittest
from nose.plugins.attrib import attr
from mock import patch
import os
import json
from jnpr.junos import Device
from jnpr.junos.factory.to_json import PyEzJSONEncoder, TableJSONEncoder, TableViewJSONEncoder
from jnpr.junos.op.routes import RouteSummaryTable
fro... | JamesNickerson/py-junos-eznc | tests/unit/factory/test_to_json.py | Python | apache-2.0 | 3,775 | [
"Firefly"
] | 8ad6c906d21a505dd6baed3f0a4a8f9557354d4c905a56065062f9df6f0f3809 |
# -*- coding: utf-8 -*-
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2009 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | pmghalvorsen/gramps_branch | gramps/gen/utils/grampslocale.py | Python | gpl-2.0 | 46,947 | [
"Brian"
] | cae5ca795fcc83f159dfbcfa0e96f2245ddda170e63b4c58202228e0df17916d |
#!/usr/bin/python
######################################################################
# Ascii TMS Viewer
#
#--------------------------------------------------------------------
# Brian Hone | Initial Release
#--------------------------------------------------------------------
# ... | flailingsquirrel/asciimapper | KMLParser.py | Python | bsd-3-clause | 8,553 | [
"Brian"
] | 989991c5583b68b79d569303aa220575b724b4050e4a24a9a79e23b5c51d2a28 |
# Copyright (C) 2016 Arvid Fahlström Myrman
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distr... | arvidfm/masters-thesis | src/nn/init.py | Python | gpl-2.0 | 1,472 | [
"Gaussian"
] | 16a9bb0cdc3f3d4ac4347316e80131c922975319b6572ee8c009cfb89258583e |
"""
Copyright (c) 2009-2010 Marian Tietz
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the follow... | sushi-irc/tekka | tekka/lib/welcome_window.py | Python | bsd-2-clause | 4,102 | [
"VisIt"
] | efec680b8f81950d33358cc7cc46b622415b14bd13b79a2664a9ab76d0ed84ca |
"""File I/O related routines."""
# Copyright (C) 2011 Atsushi Togo
# All rights reserved.
#
# This file is part of phonopy.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# * Redistributions of source code must ret... | atztogo/phonopy | phonopy/file_IO.py | Python | bsd-3-clause | 28,150 | [
"ABINIT",
"CRYSTAL",
"phonopy"
] | 6b9108fc29f70f3b0e17d5a22136def96dbfc44859cc270992713c177df70c56 |
#===============================================================================
#
# CUDATemplates.py
#
# This file is part of ANNarchy.
#
# Copyright (C) 2016-2018 Julien Vitay <julien.vitay@gmail.com>,
# Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
#
# This program is free software: you can... | vitay/ANNarchy | ANNarchy/generator/Population/CUDATemplates.py | Python | gpl-2.0 | 25,938 | [
"NEURON"
] | 73cc5c7d59a38093f958fb0d864ac7eb2e3ff444905f08cb9f0f3279903851c6 |
# -*- coding: utf-8 -*-
"""
Created on Wed Jun 11 17:20:36 2014
@author: Hera
"""
from __future__ import division
from __future__ import print_function
from builtins import range
from past.utils import old_div
import nplab.instrument.camera
import nplab.instrument.stage
from nplab.instrument import Instrument
import c... | nanophotonics/nplab | nplab/instrument/stage/camera_stage_mapper.py | Python | gpl-3.0 | 20,271 | [
"VisIt"
] | 731951204551e8ead4fcfeca324b7e63e60d2ec9ecf935b41b395ccf43d0c791 |
# Copyright (C) 2013, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import tempfile
from xml.dom import Node
from zeroinstall.zerostore import manifest
from zeroinstall import zerostore
from zeroinstall.support import tasks
from zeroinstall.injector import namespaces, qdom, model
de... | pombredanne/0template | digest.py | Python | lgpl-2.1 | 4,062 | [
"VisIt"
] | 1e3c78a65523feebc820a438d13fafb35f02b643ed5dcc208865e3ead938d928 |
from __future__ import print_function, division
import types
import pdb
import time
import sys
import os
import warnings
from six import StringIO
import numpy as np
import matplotlib.pyplot as plt
import pandas
from scipy import stats
import statsmodels.api as sm
def santizeTimestamp(timestamp):
if not isinstan... | lucashtnguyen/wqio | wqio/utils/misc.py | Python | bsd-3-clause | 37,909 | [
"Avogadro"
] | eedcce97e341be3bbb0a9c4522a61cf9a0ad732fb4ed14e5ba615faf5eae8ff2 |
"""
This is only meant to add docs to objects defined in C-extension modules.
The purpose is to allow easier editing of the docstrings without
requiring a re-compile.
NOTE: Many of the methods of ndarray have corresponding functions.
If you update these docstrings, please keep also the ones in
core/fromnum... | jorisvandenbossche/numpy | numpy/core/_add_newdocs.py | Python | bsd-3-clause | 202,937 | [
"Brian"
] | 2ea71ca44333f444c31b88d7393ac19e8977c143b4853c3423524348e52c504f |
# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | googleinterns/local_global_ts_representation | gl_rep/glr.py | Python | apache-2.0 | 20,436 | [
"Gaussian"
] | 78436d12e87f8f2571fcaa0da3dd925326d1237fdaf7d1631d0aeca680bc60c7 |
'''
Created on 14.04.2013
@author: bluesbreaker
'''
from logilab.astng.utils import LocalsVisitor
from logilab.astng.inspector import IdGeneratorMixIn
from logilab.astng.node_classes import *
from logilab.astng.scoped_nodes import Class, Function, Lambda
from logilab.astng.exceptions import InferenceError
from CSUStAn... | exbluesbreaker/csu-code-analysis | logilab-astng XML Generator/src/CSUStAn/astng/control_flow.py | Python | gpl-2.0 | 17,394 | [
"VisIt"
] | 34f7f0670bb9521dfb29be6d5f95088913b3f643dd8675228b6c5d836852325b |
# -*- coding: utf-8 -*-
import os
import logging
from core.modules.simulations_manager.weather.csv.CSVDatabaseWeatherSeries import CSVDatabaseWeatherSeries
__author__ = 'Federico Schmidt'
import csv
from netCDF4 import Dataset as NetCDF
import time
from datetime import datetime
import numpy as np
import copy
class... | schmidtfederico/PRinde | core/modules/simulations_manager/psims/WeatherNetCDFWriter.py | Python | gpl-2.0 | 9,342 | [
"NetCDF"
] | c1492aff4841580ed6ca77cd137675a4ad5d30a705e654903bfee3c3b858df22 |
# coding: utf-8
from __future__ import unicode_literals
"""
This module implements input and output processing from QChem.
"""
import copy
import re
import numpy as np
from string import Template
import six
from monty.io import zopen
from pymatgen.core.operations import SymmOp
from pymatgen.core.structure import M... | yanikou19/pymatgen | pymatgen/io/qchemio.py | Python | mit | 73,185 | [
"Gaussian",
"Q-Chem",
"pymatgen"
] | 35e3aa32f6176719d461c7cdd14d534bec863a0b1b7a89e59504f1754c8286e2 |
try: from paraview import vtk
except: import vtk
try :
from paraview import numpy_support
except:
from vtk.util import numpy_support
try:
from paraview.vtk import vtkFiltersModeling
except:
import vtk as vtkFiltersModeling
from fonctions_basiques import *
from extractions import *
imp... | aurmarsan/pyturbo | fonctions_speciales.py | Python | mit | 37,518 | [
"ParaView",
"VTK"
] | 0dfe324087b65550bf505e7761ca9c2aed6242be5b38a540d1c039b148da92cf |
#!/usr/bin/env python
# encoding: utf-8
'''
Created by Brian Cherinka on 2016-04-26 09:20:35
Licensed under a 3-clause BSD license.
Revision History:
Initial Version: 2016-04-26 09:20:35 by Brian Cherinka
Last Modified On: 2016-04-26 09:20:35 by Brian
'''
import numpy
from decimal import Decimal
from psycopg... | albireox/marvin | python/marvin/db/NumpyAdaptors.py | Python | bsd-3-clause | 4,454 | [
"Brian"
] | 9169842cf9a6ebe81aa89f30c4507396ee259c8611aa0ceb799562a6ae7f2d17 |
""" pycorrfit.models.control
Controls which fitting models are imported an in which order.
"""
import numpy as np
from .classes import Model
def append_model(modelarray):
""" Append a new model from a modelarray. *Modelarray* has to be a list
whose elements have two items:
[0] parameters
... | paulmueller/PyCorrFit | pycorrfit/models/control.py | Python | gpl-2.0 | 7,712 | [
"Gaussian"
] | d2c38748313151c90068f435a242f86b845af19b53369d8e16f936f1dc083b74 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | xguse/scikit-bio | skbio/tree/_trie.py | Python | bsd-3-clause | 7,771 | [
"scikit-bio"
] | 5ce087b7ba47c1e37579666823575fbd63e464051987afefeef3d54331a879e5 |
""" ComponentMonitoring class is a front-end to the Component monitoring Database
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import six
from urllib import parse
from DIRAC import gConfig, S_OK, S_ERROR
from DIRAC.Core.Base.DB import DB
from DIRAC.C... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/DB/ComponentMonitoringDB.py | Python | gpl-3.0 | 25,121 | [
"DIRAC"
] | 56f155b84b3105e4af30ebe0703cf3f1aaae3264f9ee449f9598de31e6c85280 |
# -*- coding: utf-8 -*-
__author__ = 'José Francisco Velez & Rainer Arencibia'
import logging
import numpy as np
import os
import sys
import time
from PyQt4 import QtCore, QtGui
import cv2
from ViewerWindow_uy import Ui_ViewerWindow
from WindowAboutus import Ui_Dialog
from src.Builders.Canny.CannyBuilder import Canny... | rainer85ah/VisionViewer | src/Viewer/VisionViewer.py | Python | mit | 11,796 | [
"Gaussian"
] | 5d1c4189af2cc33ab48a7198d6f248906358e674a9cd24789dc5fa31daba2d12 |
"""
The subpackage ``calib`` contains some useful cosmetics and pre-processing
functionalities:
- resizing frames and cubes : upscaling/pixel binning,
- shifting frames,
- rotating frames and cubes,
- cropping frames and cubes,
- removing bad pixels from frames and cubes,
- correcting nan values... | henry-ngo/VIP | vip_hci/preproc/__init__.py | Python | mit | 1,656 | [
"Gaussian"
] | 000b4436ef04f5f6bb4d374e919bc7a5e54f9a600449c84e90400067abe28a59 |
#
# Parse tree nodes for expressions
#
import cython
cython.declare(error=object, warning=object, warn_once=object, InternalError=object,
CompileError=object, UtilityCode=object, TempitaUtilityCode=object,
StringEncoding=object, operator=object,
Naming=object, Nodes=objec... | rguillebert/CythonCTypesBackend | Cython/Compiler/ExprNodes.py | Python | apache-2.0 | 386,025 | [
"VisIt"
] | d14c7dc679a0cc9cb9e4adcea29ff09189bca15d9dceefae46b80e83c833a12a |
#! /usr/bin/env python
#
# Copyright (C) 2011, 2012, 2014, 2015, 2016 David Maxwell
#
# This file is part of PISM.
#
# PISM is free software; you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation; either version 3 of the License, or (... | talbrecht/pism_pik | examples/inverse/invert_testi.py | Python | gpl-3.0 | 12,700 | [
"NetCDF"
] | 16388a8d7917af89c15af05bd82f9d8e05b8531415208f0209b594b4f3671415 |
import h2o_cmd, h2o_util
import h2o2 as h2o
import re, random, math
from h2o_test import check_sandbox_for_errors, dump_json, verboseprint
import h2o_nodes
from tabulate import tabulate
# recursive walk an object check that it has valid numbers only (no "" or nan or inf
def check_obj_has_good_numbers(obj, hierarchy=""... | bikash/h2o-dev | py2/h2o_glm.py | Python | apache-2.0 | 29,794 | [
"Gaussian"
] | 50156cba0eb891a05b5290d5f5510292727685716bedfbe86793f3106504a794 |
"""
===========================================
Sparse coding with a precomputed dictionary
===========================================
Transform a signal as a sparse combination of Ricker wavelets. This example
visually compares different sparse coding methods using the
:class:`sklearn.decomposition.SparseCoder` esti... | chrsrds/scikit-learn | examples/decomposition/plot_sparse_coding.py | Python | bsd-3-clause | 4,220 | [
"Gaussian"
] | 413942b675b572cb28f8dbb5f248222a756b812eb849070253f1c3030be517f6 |
import cProfile
import astropy.table as table
import numpy as np
import common_settings
import continuum_fit_pca
import mock_core_with_shell
from data_access.hdf5_spectrum_container import Hdf5SpectrumContainer
from data_access.qso_data import QSORecord
from physics_functions import comoving_distance
from python_comp... | yishayv/lyacorr | create_mock_forests.py | Python | mit | 4,534 | [
"Mayavi"
] | 319ffea39cb4509677000e5c908cc2470cb24d49a2a5fb034b3f6c008e118bc7 |
import logging
import json
import requests
from lxml import etree
from requests.exceptions import RequestException
from datetime import datetime
from moxie.core.kv import kv_store
from moxie.core.service import ProviderException
from . import TransportRTIProvider
logger = logging.getLogger(__name__)
CACHE_KEY = "ox... | ox-it/moxie | moxie/transport/providers/park_and_rides.py | Python | apache-2.0 | 4,299 | [
"Amber"
] | e67c17e8f5f1413a0794119345c085825a27d426e4ff5f01eaf7b0186df73b69 |
# proxy module
from __future__ import absolute_import
from mayavi.components.common import *
| enthought/etsproxy | enthought/mayavi/components/common.py | Python | bsd-3-clause | 93 | [
"Mayavi"
] | d68518957bd913641fb802d7c4da9d5fab4fd5df303e8c197cff1ed636a8ead4 |
#!/usr/bin/env python
"""
Pazookle Audio Programming Language
Copyright (C) 2013 Bob Harris. All rights reserved.
This file is part of Pazookle.
Pazookle is free software: you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free
Software Foundation,... | zacko-belsch/pazookle | pazookle/shred.py | Python | gpl-3.0 | 8,653 | [
"VisIt"
] | 1d1eb3ff2b50b62efcfc3eae11755362c650e8b225a85013838109743823f93e |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/analysis/AllParticlePos.py | Python | gpl-3.0 | 1,414 | [
"ESPResSo"
] | 77d7544d6fbd2ebf9f423f2244e0313dfa4e23dc0182fc05dfd5bd4d38c54354 |
from . import base
from .. import stats
from .. import items
from .. import dialogue
from .. import context
from .. import aibrain
from .. import effects
from .. import animobs
from .. import targetarea
from .. import invocations
from . import animals
from .. import enchantments
from .. import items
import random
from ... | jwvhewitt/dmeternal | old_game/monsters/constructs.py | Python | gpl-2.0 | 12,535 | [
"BLAST"
] | ba4cc7ffda48f9afbdbef8329dc62b0521106acbf14d803a09f09296a0e0e82b |
#!/usr/bin/python
# Author: David Stelter
# License: MIT License (See LICENSE.md)
# Copyright (c) 2017
# All rights reserved.
import os, sys, getopt
import datetime
__version__ = 0.2
#################### UNITS ####################
# Only used with --units flag
econv = 1.0 # Additional Factor for unit conversion if... | smsaladi/moltemplate | moltemplate/force_fields/convert_EMC_files_to_LT_files/emcprm2lt.py | Python | bsd-3-clause | 24,255 | [
"LAMMPS"
] | b90c7f86241943487c36b9a63cbdec0c40e46c38a521608d15dfaf6a7d25ecd0 |
'''
The aim of a beat detection algorithm is to report the times at which a typical
human listener might tap their foot to a piece of music. As a result, most
metrics for evaluating the performance of beat tracking systems involve
computing the error between the estimated beat times and some reference list of
beat loca... | mrgloom/mir_eval | mir_eval/beat.py | Python | mit | 34,468 | [
"Gaussian"
] | 04cc750516b482a6858207c1e94af0f06e93e60050b22570db1b18d12e0d3462 |
input_name = '../examples/diffusion/laplace_coupling_lcbcs.py'
output_name = 'test_laplace_coupling_lcbcs.vtk'
from tests_basic import TestInput
class Test(TestInput):
pass
| RexFuzzle/sfepy | tests/test_input_laplace_coupling_lcbcs.py | Python | bsd-3-clause | 178 | [
"VTK"
] | 16a775e7b3c3c0b2809b414a39179f3a7ae7b6babe81c821245f4e80d3366a3d |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | Chuban/moose | python/MooseDocs/common/MarkdownTable.py | Python | lgpl-2.1 | 3,002 | [
"MOOSE"
] | d1bc7595b8efe18f310b8235bb47e916b412ec5e9b87556598264778aa5ef8b8 |
# -*- coding: utf-8 -*-
import codecs
import os.path
import inlineplz.linters.clippy as clippy
clippy_path = os.path.join("tests", "testdata", "parsers", "clippy.txt")
def test_clippy():
with codecs.open(clippy_path, encoding="utf-8", errors="replace") as inputfile:
messages = sorted(list(clippy.Clippy... | guykisel/inline-plz | tests/parsers/test_clippy.py | Python | isc | 1,088 | [
"VisIt"
] | a5a0bf3f9a0635a9c2b11589705fdff3c5880f8ec4ebc7bfabeb77476163d0b1 |
#
# Copyright (c) 2017 Intel Corporation
# SPDX-License-Identifier: BSD-2-Clause
#
import sys
import numpy as np
import ast
import inspect
import operator
import types as pytypes
from contextlib import contextmanager
from copy import deepcopy
import numba
from numba import njit, stencil
from numba.core.utils import ... | seibert/numba | numba/tests/test_stencils.py | Python | bsd-2-clause | 98,430 | [
"VisIt"
] | 460c20275f075fbe4f107f452bf65307c26744e4152226b0cb73c821360e4370 |
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import errno
import fnmatch
import json
import operator
import os
import shutil
import stat
import... | indrajitr/ansible | lib/ansible/galaxy/collection.py | Python | gpl-3.0 | 68,862 | [
"Galaxy"
] | 0050c4497fe6da1d58af273890c190c55b1f01be38e65a12a7d344bd24f79ff0 |
from pymatgen.io.vaspio import Vasprun
def parse_xml():
v = Vasprun("../test_files/vasprun.xml")
if __name__ == "__main__":
import timeit
print(timeit.timeit("parse_xml()", setup="from __main__ import parse_xml",
number=1))
| Dioptas/pymatgen | dev_scripts/profile_xml.py | Python | mit | 247 | [
"pymatgen"
] | dc6a96a6f272d402f08d97b0f1df628a7e783816a660846be8deecd42117c6de |
import os
from types import GeneratorType
from tempfile import mkdtemp, NamedTemporaryFile
import numpy as np
from numpy.testing import assert_almost_equal, assert_array_almost_equal
import pytest
from sklearn.metrics import r2_score
import oddt
from oddt.scoring import scorer, ensemble_descriptor, ensemble_model
fr... | mkukielka/oddt | tests/test_scoring.py | Python | bsd-3-clause | 12,498 | [
"RDKit"
] | f9906377a322e0d07b81121f591f9908db14aa60453e7010e2dd509e8e6f3352 |
import numpy as np
import theano
import theano.tensor as T
import unittest
import tempfile
from numpy.testing import assert_array_equal
from smartlearner import views, stopping_criteria, Trainer, tasks
from smartlearner.direction_modifiers import ConstantLearningRate
from smartlearner.optimizers import SGD
from smart... | ASalvail/smartlearner | tests/direction_modifiers/test_constant_learning_rate.py | Python | bsd-3-clause | 4,298 | [
"Gaussian"
] | d0e5ef4509255582f5e22a3f0aa1608960033779712970a749ac4fc5c41b4abd |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Tool to create a new, empty .grd file with all the basic sections.
'''
from grit.tool import interface
from grit import constan... | JoKaWare/WTL-DUI | tools/grit/grit/tool/newgrd.py | Python | bsd-3-clause | 2,724 | [
"xTB"
] | f944257e8cd124b6d4d0ff08404d304d9fa7971744b94a12c3435b49069e041d |
#
# Copyright (c) 2017 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | NervanaSystems/coach | rl_coach/architectures/mxnet_components/heads/ppo_head.py | Python | apache-2.0 | 34,467 | [
"Gaussian"
] | 7a964ede595baefba335e32fa7b0c787b262aa6bfea27ff3844b24129c484a65 |
"""
Perform Levenberg-Marquardt least-squares minimization, based on MINPACK-1.
AUTHORS
The original version of this software, called LMFIT, was written in FORTRAN
as part of the MINPACK-1 package by XXX.
Craig Markwardt converted the FORTRAN code to IDL. The information for ... | jpinedaf/pyspeckit | pyspeckit/mpfit/mpfit.py | Python | mit | 97,201 | [
"Gaussian"
] | b3118ec08e725f734afb9434d1b450bff56eceb9fba0130dbfdebfdeb6d21eb7 |
#===============================================================================
# This file is part of TEMPy.
#
# TEMPy is a software designed to help the user in the manipulation
# and analyses of macromolecular assemblies using 3D electron microscopy maps.
#
# Copyright 2015 Birkbeck Colle... | OniDaito/ChimeraXTempy | TEMPy/ScoringFunctions.py | Python | mit | 101,337 | [
"Gaussian"
] | 85be23ff175e247d4ee5398b5c7311d6da244fafa1b646c11aa4b20222e74150 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
"""
Common test support for pymatgen test scripts.
This single module should provide all the common functionality for pymatgen
tests in a single location, so that test ... | aykol/pymatgen | pymatgen/util/testing.py | Python | mit | 6,802 | [
"pymatgen"
] | 4c3064b9316d6452e9d966211a743ccf0e2b7990e06485b740f85385afba8427 |
#! /usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-wms-jobs-select-output-search
# Author : Vladimir Romanovsky
########################################################################
"""
Retrieve output sandbox for DIRAC Jobs for the given ... | Sbalbp/DIRAC | Interfaces/scripts/dirac-wms-jobs-select-output-search.py | Python | gpl-3.0 | 3,266 | [
"DIRAC"
] | b6401efe9830c4ddd39263ce8c12d600a807dc03395e88d27491666dd9fb6b19 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Jason Swails
# Contributors:
#
# This code for reading Amber r... | dwhswenson/mdtraj | mdtraj/formats/amberrst.py | Python | lgpl-2.1 | 33,342 | [
"Amber",
"MDTraj",
"NetCDF"
] | 0af97b794bece1c3c41c7295ecb2bf4a20ea1d9b62ab983647bfa94e7e199e56 |
#!/usr/bin/env python
import argparse
from CPT_GFFParser import gffParse, gffWrite
from Bio import SeqIO
from gff3 import feature_lambda, feature_test_type
def main(fasta, gff3):
seq_dict = SeqIO.to_dict(SeqIO.parse(fasta, "fasta"))
codon_usage = {}
for rec in gffParse(gff3, base_dict=seq_dict):
... | TAMU-CPT/galaxy-tools | tools/gff3/stop_stats.py | Python | gpl-3.0 | 1,276 | [
"Amber"
] | ba5d39aeb0321a0a01611e2e1d6fc58b3dc5977544f50932da48a8627697b72f |
"""Random variable generators.
integers
--------
uniform within range
sequences
---------
pick random element
pick random sample
generate random permutation
distributions on the real line:
------------------------------
unif... | babyliynfg/cross | tools/project-creator/Python2.6.6/Lib/random.py | Python | mit | 32,864 | [
"Gaussian"
] | 75524c8ce97569161b832440d9b3cb309d4900ee8b96ab494cf0308c7b700cca |
"""HTML character entity references.
Backported for python-future from Python 3.3
"""
from __future__ import (absolute_import, division,
print_function, unicode_literals)
from future import standard_library
from future.builtins import *
# maps the HTML entity name to the Unicode codepoint
na... | talishte/ctigre | env/lib/python2.7/site-packages/future/standard_library/html/entities.py | Python | bsd-2-clause | 75,465 | [
"Bowtie"
] | b981539cb1c293689b8011ff3bc8232cb748e12d64bf2425cb4f916ca46c4ad2 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/bug_1117098 | openlp/plugins/songs/lib/__init__.py | Python | gpl-2.0 | 25,408 | [
"Brian"
] | 20c9ff913d9373c555625b19dc6dd3cd6101cb45129faed2162e8f63446e1336 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Jerome Rapinat
# Copyright (C) 2008 Benny Malengier
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the ... | pmghalvorsen/gramps_branch | gramps/gen/filters/rules/person/_hassourcecount.py | Python | gpl-2.0 | 1,800 | [
"Brian"
] | 2f4cc0673f4e1beebe9b68ee60661466b3afe9f076f25bae5e2d2be05bf3bd9f |
#!/usr/bin/env python
"""
Get VM instances available in the configured cloud sites
"""
from __future__ import print_function
from __future__ import division
from __future__ import absolute_import
__RCSID__ = "$Id$"
from DIRAC.Core.Base import Script
from DIRAC import gLogger, exit as DIRACExit
Script.setUsageMess... | DIRACGrid/VMDIRAC | VMDIRAC/WorkloadManagementSystem/scripts/dirac-vm-instance-stop.py | Python | gpl-3.0 | 1,112 | [
"DIRAC"
] | 6c34405efd230e653c26d7987a7ca67228e367d8106b352684a47eb4f416c27a |
#!/usr/bin/python
import unittest
import os
import random
import json
import numpy as np
from pymatgen.core.structure import Structure
from pymatgen.core.lattice import Lattice
from pymatgen.core.surface import Slab, SlabGenerator, generate_all_slabs, \
get_symmetrically_distinct_miller_indices, ReconstructionG... | czhengsci/pymatgen | pymatgen/core/tests/test_surface.py | Python | mit | 28,851 | [
"pymatgen"
] | 8ac1970c83e53be6c9e906b11b4a0fca01c45704a5dcd25de19a456aa59ee110 |
# trbchan.py ---
#
# Filename: trbchan.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Fri May 4 14:55:52 2012 (+0530)
# Version:
# Last-Updated: Fri May 3 11:45:07 2013 (+0530)
# By: subha
# Update #: 337
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
# Base clas... | dilawar/moose-full | moose-examples/traub_2005/py/channelbase.py | Python | gpl-2.0 | 5,829 | [
"MOOSE"
] | 9b645a679f18ebd532d972f00780393d63f1a8f49c6eaeafc26c8fe807053f3c |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
]
operations = [
migrations.CreateModel(
name='Apache',
fields=[
('id', models.AutoField(prima... | za/dd3 | dd3/visitor/migrations/0001_initial.py | Python | apache-2.0 | 522 | [
"VisIt"
] | 5e1c641d33993467ba4643c656a35091ce831d29d5e65d487d5647c70b6452e4 |
<<<<<<< HEAD
<<<<<<< HEAD
""" Python 'utf-7' Codec
Written by Brian Quinlan (brian@sweetapp.com).
"""
import codecs
### Codec APIs
encode = codecs.utf_7_encode
def decode(input, errors='strict'):
return codecs.utf_7_decode(input, errors, True)
class IncrementalEncoder(codecs.IncrementalEncoder):
def encode... | ArcherSys/ArcherSys | Lib/encodings/utf_7.py | Python | mit | 2,978 | [
"Brian"
] | 29bea489f60fa29cb3d3bb97d7ff115c73f3c809ff198e77ef315e98ca226027 |
import pyspeckit
# Rest wavelengths of the lines we are fitting - use as initial guesses
NIIa = 6549.86
NIIb = 6585.27
Halpha = 6564.614
SIIa = 6718.29
SIIb = 6732.68
# Initialize spectrum object and plot region surrounding Halpha-[NII] complex
spec = pyspeckit.Spectrum('sample_sdss.txt', errorcol=2)
spec.plotter(xmi... | low-sky/pyspeckit | docs/example_sdss.py | Python | mit | 2,916 | [
"Galaxy"
] | 23b32923bd03b972269dadf2c8008165f494aae8d84e58be6bc784081f8d7546 |
from contextlib import suppress
import numpy as np
import pandas as pd
from ..doctools import document
from ..exceptions import PlotnineError
from .stat_density import stat_density, compute_density
from .stat import stat
@document
class stat_ydensity(stat):
"""
Density estimate
{usage}
Parameters
... | has2k1/plotnine | plotnine/stats/stat_ydensity.py | Python | gpl-2.0 | 5,708 | [
"Gaussian"
] | 045640859aacfc6f2d5f54ac37daafc8cf4de61571ecd29bcf2fe4c6fbb8fb74 |
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