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#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | thaim/ansible | lib/ansible/modules/network/avi/avi_errorpagebody.py | Python | mit | 3,974 | [
"VisIt"
] | c51227039f85741a560f0f2b2043e14eb3fb01999ec4b611bd7ecb01d952d43d |
"""An example of how to generate a 2D structured points dataset
using numpy arrays. Also shown is a way to visualize this data with
the mayavi2 application.
The script can be run like so::
$ mayavi2 -x structured_points2d.py
Alternatively, it can be run as::
$ python structured_points2d.py
"""
# Author: Prabh... | dmsurti/mayavi | examples/mayavi/advanced_visualization/structured_points2d.py | Python | bsd-3-clause | 1,902 | [
"Mayavi",
"VTK"
] | fc0d349a4035052322a84562eb94cee598be0d8e772d63f24e2912b37b3dfa76 |
#!/usr/bin/env python3
import sys
import os
import re
import logging
import argparse
import pysam
from ECUtils import *
class SanitizeVariants(object):
'''
This class contains the main methods for sanitizing potential error
corrections based on read depth counts of near perfect read matches
'''
... | lukud/raccoon- | ECsanitize.py | Python | mit | 4,527 | [
"pysam"
] | b9b60e9f47bc415867aa4b454c884c3b54d81439419313088fc76d6401bae1c4 |
# -*- coding: utf-8 -*-
import os
import tempfile
import types
import json
from mock import patch
from nose.tools import eq_
from helper import TestCase
import appvalidator.constants
from appvalidator.errorbundle import ErrorBundle
from appvalidator.specs.webapps import WebappSpec
import appvalidator.webapp
class T... | eviljeff/app-validator | tests/test_webapp.py | Python | bsd-3-clause | 48,491 | [
"exciting"
] | 3e70d601f9bc69e8d08250c552f6529b7a1bd20e599ab6d5b6991b644a6d16d5 |
# -*- coding: utf-8 -*-
##########################################################################
# #
# Eddy: a graphical editor for the specification of Graphol ontologies #
# Copyright (C) 2015 Daniele Pantaleone <danielepantaleone@me.com> ... | danielepantaleone/eddy | eddy/core/functions/graph.py | Python | gpl-3.0 | 6,194 | [
"VisIt"
] | f4ebaaef138111f992eccdf6d9bddc91e7420dde10a84d97bbf19175d615c98a |
from __future__ import unicode_literals
import threading
import logging
from functools import wraps
from tests import TestCase as BaseTestCase
from werkzeug.serving import make_server
from flask import g, session, redirect
from catsnap.web import app
from nose.tools import nottest
from splinter import Browser
from spl... | ErinCall/catsnap | tests/web/splinter/__init__.py | Python | mit | 1,858 | [
"VisIt"
] | d2ecd038efee40c36a0a0f4bff63e63b508fda07223fabde4339e14ecd1fda56 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | dwhswenson/mdtraj | mdtraj/reporters/dcdreporter.py | Python | lgpl-2.1 | 2,555 | [
"Amber",
"CHARMM",
"MDTraj",
"NAMD",
"NetCDF",
"OpenMM"
] | 285387772f2f32c9467121b02428097140a951623bd51801e5a9af2bbe38ddb7 |
from __future__ import absolute_import
import json
import logging
import sys
from django.dispatch import receiver, Signal
from django.contrib.auth.models import User
from django.conf import settings
from django.db.models import signals
from django.urls import reverse
from django.utils.translation import ugettext as _... | artefactual/archivematica-storage-service | storage_service/locations/signals.py | Python | agpl-3.0 | 4,682 | [
"VisIt"
] | 8cc366f49262d76ed8792da87f2080891dba5fad505751d648d980540af5d7ca |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | xxshutong/openerp-7.0 | openerp/addons/project/project.py | Python | agpl-3.0 | 74,018 | [
"VisIt"
] | b25ca1140fc42860f3ad6208ea283efd45bc22af2c2c6d08bcf174be822f39d5 |
"""
Copyright (C) 2004-2015 Pivotal Software, Inc. All rights reserved.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
... | CraigHarris/gpdb | src/test/tinc/tincrepo/mpp/gpdb/tests/storage/uao/uao_heap_isolation/test_uao_heap_isolation.py | Python | apache-2.0 | 1,639 | [
"ORCA"
] | 7ad065eadd29e5fc72ab83f1c67050ba18b5ad329f2779c316f93b3801256bfc |
# -*- coding: utf-8 -*-
# (c) Nelen & Schuurmans. GPL licensed, see LICENSE.rst.
from __future__ import print_function
from __future__ import unicode_literals
from __future__ import absolute_import
from __future__ import division
import os
import logging
import celery
from osgeo import gdal
from gislib import rast... | nens/threedi-wms | threedi_wms/threedi/tasks.py | Python | gpl-3.0 | 3,878 | [
"NetCDF"
] | 9bc733e3f37bbc93dad1aa121d2e55e3594701fa44d051ce3892e4eb9f2734d5 |
from ddapp import lcmUtils
from ddapp import objectmodel as om
from ddapp import visualization as vis
from ddapp.utime import getUtime
from ddapp import transformUtils
from ddapp.debugVis import DebugData
from ddapp import ioUtils
from ddapp import robotstate
from ddapp import applogic as app
from ddapp import vtkAll a... | gizatt/director | src/python/ddapp/footstepsdriver.py | Python | bsd-3-clause | 46,876 | [
"VTK"
] | f62b90729c8d4de1d7c85304302dced9cfec64b08056b0de9c93f875329d6f4c |
import ast
import importlib.abc
import sys
from . import Importer
class AssertionRewritingImporter(Importer):
def setup_parser(self, parser):
parser.add_argument('--no-assert',
action='store_false',
dest='rewriting',
defau... | benjamin-hodgson/Contexts | src/contexts/plugins/importing/assertion_rewriting.py | Python | mit | 12,102 | [
"VisIt"
] | 726c1966d47000eda20beff472a8c5d3af4965e4084d74a68f0b13e4f27a8249 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | stoqlib/domain/station.py | Python | gpl-2.0 | 3,857 | [
"VisIt"
] | 2547ec7072fe424391881f9bfe58b7a38693b09d99644905719efbbb44517a89 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
#
# ========================== pyDataViewer ==========================
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Lic... | edwardsmith999/pyDataView | pyDataView.py | Python | gpl-3.0 | 1,554 | [
"exciting"
] | 60a7eb62c12516fab6d03ed6dcb2e83ccb14ae7ae06901a555a1795114c35f12 |
""" Schemas for mesoscope scans."""
import datajoint as dj
from datajoint.jobs import key_hash
import matplotlib.pyplot as plt
import numpy as np
import scanreader
from . import experiment, injection, notify, shared
from .utils import galvo_corrections, signal, quality, mask_classification, performance
from .exception... | dimitri-yatsenko/pipeline | python/pipeline/meso.py | Python | lgpl-3.0 | 82,530 | [
"Gaussian"
] | efb7b78f748192cd537564d9edba9e005006522dafea87f00f1acb7ea2a5d55a |
# Copyright 2016 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | TuKo/brainiak | brainiak/utils/fmrisim.py | Python | apache-2.0 | 74,062 | [
"Gaussian"
] | 394281290f98d410649b7352b496ef9140d3998eb0fbdd281febfb3d708307fb |
import os
import logging
import time
import random
import urllib
import urllib2
import httplib2
import hashlib
import json
from datetime import datetime
from datetime import timedelta
from StringIO import StringIO
import webapp2
from webapp2_extras import security
from webapp2_extras.auth import InvalidAuthIdError, ... | kordless/wisdom | web/handlers/userhandlers.py | Python | mit | 11,039 | [
"VisIt"
] | 2857e6d4934a0bea57a70e4af0c67eaceea06380233dc1db6f25d6616c394bfb |
# Copyright 2004 by Iddo Friedberg.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Reduced alphabets which lump together several amino-acids into one letter.
Reduced (re... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Alphabet/Reduced.py | Python | gpl-2.0 | 5,024 | [
"Biopython"
] | d6e79f5a02abc7a018be5fbe58f360f6569f266fa81b1de01c1d0922bdd3d745 |
# -*- coding: utf-8 -*-
#
# vinit_example.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, ... | hakonsbm/nest-simulator | pynest/examples/vinit_example.py | Python | gpl-2.0 | 3,200 | [
"NEURON"
] | 837f05401519c70aa3772917da6ebe6961ee55c122bcddf10169afc65640cc3e |
from __future__ import print_function
from ..core.constants import Ha2eV
from ..core.util import report_runtime
from ..core import EpcAnalyzer
__all__ = ['compute_cumulant']
@report_runtime
def compute_cumulant(
# Options
temperature = True,
renormalization = True,
broadening = Fals... | abinit/abinit | scripts/post_processing/ElectronPhononCoupling/ElectronPhononCoupling/interface/compute_cumulant.py | Python | gpl-3.0 | 8,649 | [
"ABINIT"
] | e01f9f7669f974f2a7183503e1a24e50feb93203d5a00050f7a72d96f0fd948b |
#!/homes/dthybert/software/Python-2.7.5/python
import pysam
import scipy.stats
import sys
import argparse
class GenomeSegment:
def __init__(self,size, chr,start):
self.chr=chr
self.start=start
self.windowsSmoothing=5
self.lstPos=[0]*size
self.lstNbRead=[0]*size
self.lstFraction=[0.0]*size
self.lstNor... | tk2/assembly-eval | consistent/GetconsistantRegions_new.py | Python | mit | 9,046 | [
"pysam"
] | 191ebb99c54ca7df7b8ae2afed73b7214384cd4badc008c5686449c43b1bdfcb |
from twilio.rest import TwilioRestClient
def action():
# To find these visit https://www.twilio.com/user/account
ACCOUNT_SID = "{{account_sid}}"
AUTH_TOKEN = "{{auth_token}}"
from_ = "{{from}}"
to = "{{to}}"
url = "{{url}}"
client = TwilioRestClient(ACCOUNT_SID, AUTH_TOKEN)
ca... | obulpathi/cloudcron | templates/action/call.py | Python | apache-2.0 | 376 | [
"VisIt"
] | d3ad7a5259dc4178586f912bbe723342261e66ee630c4ed231c4f0732dcdae4f |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006-2009 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | andrebellafronte/stoq | stoqlib/domain/receiving.py | Python | gpl-2.0 | 19,830 | [
"VisIt"
] | cfc93cd0f10658ca8651f1f95c7769f0752bab9b1aeef5f06fcd6071a6aef4e8 |
import argparse, os, sys, getpass
from random import randint
from subprocess import Popen, PIPE
from lib.util import Util, OSUtil, DBUtil
from config import SETTINGS, TEXT
class File(OSUtil):
def __init__(s, *args, **kwargs):
super(File, s).__init__(*args, **kwargs)
file_path = args[0]
con... | daviddennis1/auto | auto.py | Python | mit | 11,420 | [
"VisIt"
] | 34189cd047ec5ad4dbc78fe717b77eb80aeaa49acf052a19be172f043e363470 |
"""This directory is setup with configurations to run the main functional test.
It exercises a full analysis pipeline on a smaller subset of data.
"""
import os
import subprocess
import unittest
import shutil
import contextlib
import collections
import functools
from nose import SkipTest
from nose.plugins.attrib impo... | lpantano/bcbio-nextgen | tests/test_automated_analysis.py | Python | mit | 17,578 | [
"Galaxy"
] | e884a9bb54233c239d7243881610bd215eec44412f62581f3efcf1083adec302 |
import numpy as np
from scipy.stats import gaussian_kde, multivariate_normal
import scipy.interpolate as interp
import matplotlib.pyplot as plt
from matplotlib import ticker
import mpl_scatter_density
from astropy import table as t
from importer import *
from functools import partial
from sklearn.neighbors import K... | zpace/stellarmass_pca | cmlr.py | Python | mit | 18,526 | [
"Gaussian"
] | f81cd74268a1ab8ebf64d79677aca0eb7ba1cb1bb2e9dd8955a3f6fb8615897d |
# Copyright 2000-2003 Jeff Chang.
# Copyright 2001-2008 Brad Chapman.
# Copyright 2005-2015 by Peter Cock.
# Copyright 2006-2009 Michiel de Hoon.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part ... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Bio/SeqFeature.py | Python | apache-2.0 | 65,721 | [
"BioPerl",
"Biopython"
] | 60269335a248d494c1cf981686e363f6f9cc293adde98090f5892825158db7de |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Utility to retrieve x-ray data from external libraries/databases
===================================================================
Available libraries/dbs and order of usage
------------------------------------------
1. `xraylib <https://github.com/tschoonj/xraylib>... | maurov/xraysloth | sloth/utils/xdata.py | Python | bsd-3-clause | 31,445 | [
"CRYSTAL"
] | a7bf1e5ada710681b8d461812a8593e0ca3ba8867dce50d772dc77db611f6737 |
#!/usr/bin/python
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2010-2013 Francois Beaune, Jupiter Jazz Limited
# Copyright (c) 2014-2018 Francois Beaune, The appleseedhq Organ... | est77/appleseed | scripts/rendermany.py | Python | mit | 6,888 | [
"VisIt"
] | d91a0e1d94bcd8d6d487bcf73797469c7ef74a91aaff815fb23dbc88e4a9c5cf |
"By Konstantin"
import multiprocessing as mp
import numpy as np
import time as tm
import subprocess
import matplotlib.pyplot as plt
import os
from pandas import read_csv
from dolfin import *
import h5py
from tissue_dielectrics import DielectricProperties
set_log_active(False) #turns off debugging info
#Parallel_fi... | andreashorn/lead_dbs | ext_libs/OSS-DBS/OSS_platform/Parallel_field_calc.py | Python | gpl-3.0 | 13,117 | [
"NEURON"
] | 4a4cac2a5f311f1bf74978b0a9f4e3fa437f23c67b9e7565010dc216243a7ed2 |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
dataset_destination_path = '/Users/seb/Desktop/vtk_cone'
# -----------------------------------------------------------------------------
... | Kitware/in-situ-data-viewer | scripts/examples/vtk/samples/cone.py | Python | bsd-3-clause | 1,665 | [
"VTK"
] | ff8ad650ad36ed070f452d96b70c3ae96e6a127498200ada23b1b80540e477ad |
#
# Honeybee: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Honeybee.
#
# Copyright (c) 2013-2015, Mostapha Sadeghipour Roudsari <Sadeghipour@gmail.com>
# Honeybee is free software; you can redistribute it and/or modify
# it under the terms of the GNU Ge... | samuto/Honeybee | src/Honeybee_Annual Daylight Simulation.py | Python | gpl-3.0 | 5,020 | [
"EPW"
] | 76df1da2f413191fc7a94026adb1c2fbeddc3ff315f350b4bf5fa02475b7c723 |
###############################################################################
# DoubleExponentialDiskPotential.py: class that implements the double
# exponential disk potential
#
# rho(R,z) = rho_0 e^-R/h_R e^-|z|/h_z
########################... | followthesheep/galpy | galpy/potential_src/DoubleExponentialDiskPotential.py | Python | bsd-3-clause | 13,474 | [
"Gaussian"
] | 652f4d3e155e654995ab3d7259d38254ea257ea23c2d96aa5b80b0fcc52e7f32 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Author:
# Linwood Creekmore
# Email: valinvescap@gmail.com
##################################
# Standard Library imports
##################################
import datetime
import numpy as np
from dateutil.parser import parse
from gdelt.helpers import _testdate
###########... | linwoodc3/gdeltPyR | gdelt/vectorizingFuncs.py | Python | gpl-3.0 | 6,602 | [
"VisIt"
] | 31dbfe80cfc0aa00300154fc52e00c0d50ee89692c08f4c724641a5da1ca281e |
import codecs
import os
import sys
from distutils.util import convert_path
from fnmatch import fnmatchcase
from setuptools import setup, find_packages
def read(fname):
return codecs.open(os.path.join(os.path.dirname(__file__), fname)).read()
# Provided as an attribute, so you can append to these instead
# of r... | GeoNode/geonode-announcements | setup.py | Python | mit | 4,743 | [
"Brian"
] | cc03eb12c07aa8b6bbff54b1884d6cbab47b0e4f147e855d05d0cf3c7cfda5ef |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Run the core of the alleleseq pipeline.
============================================================================
FILE: run_pipeline.py
DIR: /scratch/users/dacre/alleleseq/newrun
AUTHOR: Michael D Dacre, mike.dacre@gmail.com
ORGANIZAT... | MikeDacre/mike_tools | bin/run_alleleseq_pipeline.py | Python | unlicense | 14,712 | [
"Bowtie"
] | 6ee0d3692f6bca95b5fc3c65628e923552b77dbb6aee5ae47529278bcdcea33e |
# creates: test.txt
from __future__ import print_function
import sys
import numpy as np
# Monkey-patch view() to avoid ase-gui windows popping up:
import ase.visualize
ase.visualize.view = lambda *args, **kwargs: None
fd = open('test.txt', 'w')
sys.path.append('selfdiffusion')
import neb1
e1 = np.ptp([i.get_potenti... | misdoro/python-ase | doc/tutorials/test.py | Python | gpl-2.0 | 621 | [
"ASE"
] | b534049efb22c04ac6946e47228a061ededc998e338a056e48ef2e8b8be8f6f1 |
#!/usr/bin/env ipython -wthread
from enthought.mayavi.mlab import *
from neuron3d import *
#===============================================================================
# Create a mayavi figure
#===============================================================================
fig = mlab.figure(bgcolor = (0.1, 0.1, 0.... | tfoutz99/Neuron3D | Examples/5_Nuclei.py | Python | gpl-3.0 | 817 | [
"Mayavi"
] | 9bf515ab20876b78cb62cf6ff4ca58e490a46248c5aaa83f1b5ce6b63ed0d9a0 |
""" Client for interacting with Framework/BundleDelivery service
"""
import os
import tarfile
import cStringIO
from DIRAC import S_OK, gLogger
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.Core.DISET.TransferClient import TransferClient
from DIRAC.Core.Security import Locations, CS, Utilities
class Bu... | arrabito/DIRAC | FrameworkSystem/Client/BundleDeliveryClient.py | Python | gpl-3.0 | 4,778 | [
"DIRAC"
] | 579d18fd383475850e3c9b1d46f73f5eb9b06c286145ac89d5cae483122bbb7f |
from .base import SOLAR, EARTH, WATER, FIRE, AIR, LUNAR, Spell
from .. import effects
from .. import targetarea
from .. import enchantments
from .. import animobs
from .. import stats
from .. import invocations
# CIRCLE ONE
CURSE = Spell( "Curse",
"Decreases the physical attack score of enemies within 6 tiles by ... | jwvhewitt/dmeternal | old_game/spells/lunarspells.py | Python | gpl-2.0 | 5,900 | [
"BLAST"
] | bcc6f56ed76e3da22f12ba11a708540b67559e886900d7d0605a54ff6aafdefd |
"""
update-github-clone
----
A small Flask application to keep a github clone up to date.
If you have a clone of a github repo on some remote server somewhere, you
can keep that cloned repo up to date by using this app and github's webhook
API.
"""
from setuptools import setup
setup(
name='update-github-clone'... | drivet/update-github-clone | setup.py | Python | mit | 1,193 | [
"Desmond"
] | 7adeff0df81d8515ec952f1f9dfffe6970acbf57fe18dc6da222663cdec9d6f0 |
r"""
This example shows how to use the post_process_hook to probe the output data.
Find :math:`\ul{u}` such that:
.. math::
\int_{\Omega} D_{ijkl}\ e_{ij}(\ul{v}) e_{kl}(\ul{u})
= 0
\;, \quad \forall \ul{v} \;,
where
.. math::
D_{ijkl} = \mu (\delta_{ik} \delta_{jl}+\delta_{il} \delta_{jk}) +
\l... | vlukes/sfepy | examples/linear_elasticity/linear_elastic_probes.py | Python | bsd-3-clause | 5,151 | [
"VTK"
] | d858294dc89db68e28f337bd736abda75f51d32bd65253be3efa1fc3a2650236 |
# Copyright (c) 2006-2014 LOGILAB S.A. (Paris, FRANCE) <contact@logilab.fr>
# Copyright (c) 2012-2014 Google, Inc.
# Copyright (c) 2014 Brett Cannon <brett@python.org>
# Copyright (c) 2014-2016 Claudiu Popa <pcmanticore@gmail.com>
# Copyright (c) 2015 Aru Sahni <arusahni@gmail.com>
# Copyright (c) 2015 Florian Bruhin <... | rogalski/pylint | pylint/utils.py | Python | gpl-2.0 | 46,055 | [
"VisIt"
] | ac5119e405c58590c73b15594f3ec51a00e0033619e5b8e09f5ed3ce72b428cc |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | jcurry/ZenPacks.skills1st.UserRoles | ZenPacks/skills1st/UserRoles/backups/Location.py | Python | gpl-2.0 | 5,834 | [
"VisIt"
] | e260b02815dc607b504a9044f43ecf9aa46d016dfddd7905aeef719222c52f91 |
# -*- coding: latin-1 -*-
from PyQt4 import QtCore, QtGui
import urllib2
import re
import os
import xml.dom.minidom
#if (os.name == "nt"):
# import codecs, win32com.client
from conpresencesrv import ConPresenceSrv
from ui_vboxup import Ui_VBoxUp
class Ui_VBoxMain(QtGui.QWidget):
def __init__(self, parent, debug):
s... | guigeek208/clickdial | ui_vboxmain.py | Python | gpl-3.0 | 22,108 | [
"VisIt"
] | 4e0e0495b989f60015bac0baddaf3a009b61f5ca9ebc7ee51fa89642dad8e418 |
from aces.materials.POSCAR import structure as Material
class structure(Material):
def getPOSCAR(self):
return """POSCAR file written by OVITO
1.0
4.0949149132 0.0000000000 0.0000000000
-2.0474572182 3.5462999282 0.0000000000
0.0000000000 0.0000000000 ... | vanceeasleaf/aces | aces/materials/InSe.py | Python | gpl-2.0 | 1,218 | [
"ASE",
"OVITO"
] | b42757a41ee64c155e508440f01ad2a968d28f8aae4e489253ac73b534191ffa |
"""Projects CNN forecasts onto the RAP grid."""
import argparse
import numpy
from gewittergefahr.gg_io import storm_tracking_io as tracking_io
from gewittergefahr.gg_utils import time_conversion
from gewittergefahr.gg_utils import target_val_utils
from gewittergefahr.gg_utils import gridded_forecasts
from gewittergefa... | thunderhoser/GewitterGefahr | gewittergefahr/scripts/make_gridded_cnn_forecasts.py | Python | mit | 10,803 | [
"Gaussian"
] | da655766bfca929306c3b3df90c100e351e8c509e08c0d430a2c0bf0ca3332c4 |
#!/usr/bin/env python3
import locale
import sys
from os import getenv
from subprocess import call
# Start ignoring PyImportSortBear as imports below may yield syntax errors
from coalib import assert_supported_version
assert_supported_version()
# Stop ignoring
import setuptools.command.build_py
from coalib.misc impo... | AdeshAtole/coala | setup.py | Python | agpl-3.0 | 5,189 | [
"VisIt"
] | 5e677f31b8da13675c916a85125c3aa09ffe7b6748dc4ab41e5f39594cfb1a63 |
# Copyright 2010 by Dana Larose
# This file is part of crashRun.
# crashRun is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | DanaL/crashRun | src/DungeonMaster.py | Python | gpl-3.0 | 107,238 | [
"BLAST"
] | 5b218cadcf823c90a3d2dd619af1522690e42335b7b37565d3eb67376e226d7d |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2022, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Basis Set Representations
##############################
This module provides classes that support representations of various basis sets.
There are a handful of basis sets in com... | exa-analytics/exatomic | exatomic/core/basis.py | Python | apache-2.0 | 15,720 | [
"Gaussian",
"MOLCAS",
"NWChem"
] | 4a5a4106161f7139caf099076b8afbe79e26a0a213b2c780600f6f5e791fb97a |
## INFO ########################################################################
## ##
## cutils ##
## ====== ... | petervaro/cutils | internal/dynamic_array.py | Python | gpl-3.0 | 13,895 | [
"VisIt"
] | b28c34ce32cc251978ecbe7e4cde09570d87b59ea60f784afa41c3d8587f3790 |
"""
This sample sets up a polymer.
"""
#
# Copyright (C) 2013-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the L... | hmenke/espresso | samples/minimal-polymer.py | Python | gpl-3.0 | 3,253 | [
"ESPResSo"
] | b58af4b64c521c5985e794f84d2a522e7cf3059b9769702e553f14b7093de78d |
#!/usr/bin/env python
#
# Copyright (C) 2014
# Brian Caswell <bmc@lungetech.com>
# Narf Industries <info@narfindustries.com>
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without res... | f0rki/cb-multios | disabled-challenges/SBTP/support/machine.py | Python | mit | 8,351 | [
"Brian"
] | 0fe0f3205d222b36185e737a12070a6f95e8fd3c2b8e6464cdfc2fc07298bb62 |
"""Scan an ADF image an visit all files"""
import StringIO
from amitools.fs.blkdev.BlkDevFactory import BlkDevFactory
from amitools.fs.ADFSVolume import ADFSVolume
class ADFSScanner:
def __init__(self):
self.factory = BlkDevFactory()
def can_handle(self, scan_file):
base_name = scan_file.get_basename()... | alpine9000/amiga_examples | tools/external/amitools/amitools/scan/ADFSScanner.py | Python | bsd-2-clause | 2,113 | [
"ADF",
"VisIt"
] | 2b7ae62b6f6d1a797e95f1ece09fbbef4e489188526c94b4f953787ac09c0cf7 |
# -*- coding: utf-8 -*-
# EDIS - a simple cross-platform IDE for C
#
# This file is part of Edis
# Copyright 2014-2015 - Gabriel Acosta <acostadariogabriel at gmail>
# License: GPLv3 (see http://www.gnu.org/licenses/gpl.html)
import sys
import os
from subprocess import Popen, PIPE
from PyQt4.QtCore import (
SIGNA... | centaurialpha/edis | src/ui/thread_parse.py | Python | gpl-3.0 | 2,755 | [
"VisIt"
] | a6ea9d6106d3e9161e7fd7d0711bef25d24e14efba3531c7040ef1e6f74ddb12 |
import os, sys
import unittest
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
import logging
import csv
from slicer.util import VTKObservationMixin
import platform
import time
import urllib
import shutil
from CommonUtilities import *
from packaging import version
def _setSectionResizeMode(head... | bpaniagua/SPHARM-PDM | Modules/Scripted/ShapeAnalysisModule/ShapeAnalysisModule.py | Python | apache-2.0 | 88,012 | [
"Gaussian",
"VTK"
] | e5b8532382063c0c80f83f9bbe5727fab2b8751f44527640ec62114eea48b630 |
from openpiv import filters
from openpiv.lib import replace_nans
import numpy as np
def test_gaussian_kernel():
""" test of a _gaussian_kernel """
assert np.allclose(
filters._gaussian_kernel(1),
np.array(
[
[0.04491922, 0.12210311, 0.04491922],
[0.... | OpenPIV/openpiv-python | openpiv/test/test_filters.py | Python | gpl-3.0 | 1,917 | [
"Gaussian"
] | 50db2ef90664efbadf4dc2f427cffd1045c072883536b6dfdfbc9a5e749a725f |
# Copyright 2017 Giorgia Fenoglio
#
# This file is part of NNsTaxonomicResponding.
#
# NNsTaxonomicResponding is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your opti... | gfbfenoglio/NNsTaxonomicResponding | SOMs/SOM.py | Python | gpl-3.0 | 11,046 | [
"Gaussian",
"NEURON"
] | c40465c6b61e8e44794e8ed2f8431453e5d10ea627684aef302e9109168ddf56 |
# -*- coding: utf-8 -*-
# built-ins
import os
import sys
#import argparse
import re
import json
from os.path import split as split_path, join as join_path
from fnmatch import filter as fnfilter
import logging
import json
import itertools as it
import subprocess
import tempfile as tmp
# libraries
from PIL import Image
... | VCG/gp | raveler/ray/ray/imio.py | Python | mit | 23,480 | [
"VTK"
] | 8577f69ae706a6e99f0fbd9669c8c15c956d48640dc045e682ec2aba0c5d5467 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
#~~~~~~~GLOBAL IMPORTS~~~~~~~#
# Standard library packages import
from multiprocessing import Value, Process, Queue, cpu_count
from time import time
import gzip
from os import path
# Third party package import
from Bio import SeqIO
# Local Package import
from pyDNA.Utili... | a-slide/pyDNA | FastqFT/FastqFilter.py | Python | gpl-2.0 | 12,538 | [
"Biopython"
] | 425aea2214bd5ca4f1a2ec13b07f98112b6b57012cab627bb30056bd0971913f |
def build_models(process_only_these_targets=None, process_only_these_templates=None):
r'''Uses the build_model method to build homology models for a given set of
targets and templates.
MPI-enabled.
'''
import os
import Bio.SeqIO
import mpi4py.MPI
comm = mpi4py.MPI.COMM_WORLD
rank =... | danielparton/MSMSeeder | MSMSeeder/modelling.py | Python | gpl-2.0 | 13,355 | [
"Biopython",
"MDTraj"
] | 430bb5e71738b49216afb6fe4cf15d72a665fb3118a5e954446cfaaa3ff849f9 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Preparing a file for codeml in PAML from a fasta alignment file
__authors__ = "Eric Normandeau"
__program_name__ = "alignment2paml"
__version_info__ = ('0', '0', '2')
__version__ = '.'.join(__version_info__)
__revision_date__ = "2010-05-20"
# Importing modules
import... | wkh124/wkh124 | alignment2paml.py | Python | gpl-3.0 | 7,768 | [
"Biopython"
] | 016187b51995e1a2dd9ed454ce381581a726f83d5a514f75fe25fed80c924c86 |
#!/usr/bin/env python
import argparse, sys
from argparse import RawTextHelpFormatter
import pysam
__author__ = "Author (email@site.com)"
__version__ = "$Revision: 0.0.1 $"
__date__ = "$Date: 2013-05-09 14:31 $"
# --------------------------------------
# define functions
def get_args():
parser = argparse.Argumen... | cc2qe/bamkit | bamheadrg.py | Python | mit | 3,535 | [
"pysam"
] | c7fcda027d3b8125a99f2812adb6c56d57ad26b71365070b1fccfe0e4fbe4dd4 |
#####################################################################
# File: ReqManagerHandler.py
########################################################################
"""Implementation of the RequestDB service in the DISET framework
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN ReqManager
:... | DIRACGrid/DIRAC | src/DIRAC/RequestManagementSystem/Service/ReqManagerHandler.py | Python | gpl-3.0 | 13,808 | [
"DIRAC"
] | a9ec7ac57f954399d2e58447528adb59bf9e6bd464f22e3da883781617b79026 |
"""
Data structure for 1-dimensional cross-sectional and time series data
"""
from io import StringIO
from shutil import get_terminal_size
from textwrap import dedent
from typing import (
IO,
TYPE_CHECKING,
Any,
Callable,
Iterable,
List,
Optional,
Tuple,
Type,
Union,
)
import war... | jreback/pandas | pandas/core/series.py | Python | bsd-3-clause | 153,727 | [
"Elk"
] | aeb1d06b0b3799cf1202bdf36d4901da032f20c1a22d46c4e20fcd3c27263e4d |
# This code is part of Ansible, but is an independent component.
# This particular file snippet, and this file snippet only, is BSD licensed.
# Modules you write using this snippet, which is embedded dynamically by Ansible
# still belong to the author of the module, and may assign their own license
# to the complete wo... | HuaweiSwitch/ansible | lib/ansible/module_utils/basic.py | Python | gpl-3.0 | 100,853 | [
"VisIt"
] | 88e268dd587bf46beeaffb632f7142f3bc1bfe55e69f2c90100afce0a603fa64 |
"""
Authors: Craig Heady (craig.heady@csiro.au)
Copyright 2015 CSIRO
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or... | taerwin/cwsl-mas | cwsl/vt_modules/vt_cdo_calc_pdf.py | Python | apache-2.0 | 3,338 | [
"NetCDF"
] | a93facac1f9c84fa09ea6e3cece34b93d604fba0a94b6a09425c2a161e8090dc |
# Adapted from the NLTK package v3.0.1:
# https://github.com/nltk/nltk/blob/3.0.1/nltk/stem/snowball.py
#
# Natural Language Toolkit: Snowball Stemmer
#
# Copyright (C) 2001-2014 NLTK Project
# Author: Peter Michael Stahl <pemistahl@gmail.com>
# Peter Ljunglof <peter.ljunglof@heatherleaf.se> (revisions)
# Algo... | summanlp/textrank | summa/preprocessing/snowball.py | Python | mit | 166,890 | [
"ASE"
] | 14bb58f87ffedf1994fb457978e83a74668682145260a567f171fd60624d381f |
name="Brian"
print "The life of "
Include("whoseName.py")
| jhjguxin/PyCDC | Karrigell-2.3.5/test/data/include_namespace.py | Python | gpl-3.0 | 58 | [
"Brian"
] | 9d984a1589ab8039dae76232648b6d69c9934d50ddf96e0a750808b32d51c567 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | kain88-de/mdanalysis | package/MDAnalysis/core/__init__.py | Python | gpl-2.0 | 13,498 | [
"Amber",
"CHARMM",
"Gromacs",
"MDAnalysis"
] | 1ef017a13d364d9db433fe3e454d09bdf3459cb152bb9669e4c07b7725cddf46 |
import unittest
from simplerepresentations import RepresentationModel
import numpy as np
from shorttext.utils.transformers import WrappedBERTEncoder
# class SimpleRepresentationsSentenceEncoder:
# def __init__(self):
# self.representation_model = RepresentationModel(
# model_type='bert',
# ... | stephenhky/PyShortTextCategorization | test/test_bertrepresentations.py | Python | mit | 1,705 | [
"CRYSTAL"
] | 6bb2643995c576e50de32eb07db294dd847a74cec03829ec2f4e5ab09e73f89f |
#
# AtHomePowerlineServer - networked server for CM11/CM11A/XTB-232 X10 controllers
# Copyright (C) 2014 Dave Hocker
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
... | dhocker/athomepowerlineserver | helpers/TimeZone.py | Python | gpl-3.0 | 943 | [
"xTB"
] | 050f076ad8e4c8d14c954a922e69c7c35f70908ed99c11ece58b025f0e9b223a |
"""
This script contains Rectfied Linear Unit and Support Vector Machine implementations.
"""
from random import randint
import pdb
import math
import numpy
import warnings
warnings.filterwarnings("error")
class Neuron:
def __init__(self, weights, bias):
self.weights = numpy.array(weights)
self.b... | ashleyjsands/machine-learning | binary_classification_tutorial/svm.py | Python | mit | 4,499 | [
"NEURON"
] | 6e0d466a2a2ae1b6d7c8bc327d0ada4dd40bbcb06b6e2e0e267530f14054c68b |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django import db
from django.core.exceptions import ValidationError
from django.test import SimpleTestCase
from localflavor.nl import forms, models, validators
from .forms import NLPlaceForm
from .models import NLPlace
class NLLocalFlavorValidato... | infoxchange/django-localflavor | tests/test_nl/tests.py | Python | bsd-3-clause | 7,290 | [
"BWA"
] | 44f83ade46c4dcc71aa7dc85fc5b72d7244dd7154506fabc99db07e0565fad96 |
#!/usr/bin/env python
import re, os, sys, argparse
from reportlab.lib import colors
from reportlab.lib.pagesizes import A4, landscape
from reportlab.platypus import SimpleDocTemplate, Table, TableStyle, Paragraph
from reportlab.lib.styles import getSampleStyleSheet
def buildTable(args, data):
# Change to what ev... | yipenggao/moose | scripts/traceability_matrix.py | Python | lgpl-2.1 | 7,226 | [
"MOOSE"
] | 679450792fce1ee7c4b153a1ceb7f9b6e751f0adca025e442e1ad6c0a7f60b96 |
import sys
import logging
logger = logging.getLogger('firefly-API')
PY3 = sys.version_info[0] == 3
if(PY3):
string_types = str
else:
string_types = basestring
from .util import HTTP_VERBS, PAYLOAD_ENCODING
from .api import API | digimondo/python-fireflyapi | fireflyapi/__init__.py | Python | mit | 238 | [
"Firefly"
] | 5ad47f6c26a109546ad3b3467e4efb66bf52bec3e77e4dc325f04edc368bb9c2 |
# This file is part of PyEMMA.
#
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER)
#
# PyEMMA is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either versi... | markovmodel/PyEMMA | pyemma/coordinates/data/featurization/angles.py | Python | lgpl-3.0 | 9,965 | [
"MDTraj"
] | 9071555177a336896e208411c7ac0200f330d8ce8d3417a171fdb0ae7aaa41a6 |
import collections.abc as cabc
from copy import copy
import numpy as np
import pandas as pd
from cycler import Cycler
from matplotlib.axes import Axes
from matplotlib.figure import Figure
from matplotlib.colors import Normalize
from matplotlib import pyplot as pl
from matplotlib import rcParams, cm
from anndata import ... | theislab/scanpy | scanpy/plotting/_tools/__init__.py | Python | bsd-3-clause | 48,427 | [
"Gaussian"
] | a272130027709b404c10248f3ced2819c9fdde29e0b4890e1315a4fe66dcb441 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import itertools
from pymatgen.core.lattice import Lattice
import numpy as np
from pymatgen.util.testing import PymatgenTest
from pymatgen.core.operations impo... | aykol/pymatgen | pymatgen/core/tests/test_lattice.py | Python | mit | 20,063 | [
"pymatgen"
] | fa49a902dd6cf12b7b21339228a31981c88bd7dc8cce27e6d650efc9297f0966 |
# ######################################################################
# Copyright (c) 2014, Brookhaven Science Associates, Brookhaven #
# National Laboratory. All rights reserved. #
# #
# @author: Li Li (lili@bnl.g... | yugangzhang/scikit-beam | skbeam/core/fitting/lineshapes.py | Python | bsd-3-clause | 15,123 | [
"Gaussian"
] | 81a390a1e2366d3f1154e8ac02f23ce67d59774ece160fd6975becf903359f0b |
#!/usr/bin/env python
# This file is part of MSMBuilder.
#
# Copyright 2011 Stanford University
#
# MSMBuilder is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your opt... | mpharrigan/msmbuilder | Tutorial/PlotDihedrals.py | Python | gpl-2.0 | 2,998 | [
"MDTraj"
] | f06a89931003da68421e1bdbc5f22f43adb46c694876509971e1f65267c6e25c |
# Orca
#
# Copyright 2004-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | pvagner/orca | src/orca/scripts/apps/Thunderbird/speech_generator.py | Python | lgpl-2.1 | 1,656 | [
"ORCA"
] | 5c513d75ceddb7171570cd3e1df612c88d519b49fa7f16688009e939709ff5dc |
#!/usr/bin/python
# Michael Shavlovsky, 2012
# Luca de Alfaro, 2015
# BSD License.
import datetime
import json_plus
import json
import os
import numpy as np
import unittest
class AuthorshipAttribution(json_plus.Serializable):
"""Usage (see also unit tests at the end):
a = TextAttribution.new_text_attribution... | jokerlin/WSE | authorship_attribution.py | Python | mit | 30,423 | [
"VisIt"
] | 9f7254456f65c83a30b53f31ec8c745b290b7f35a12980523ca4af071f41c227 |
# Copyright (C) 2016 Christopher M. Biwer, Collin Capano
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This progr... | tjma12/pycbc | pycbc/distributions/gaussian.py | Python | gpl-3.0 | 9,281 | [
"Gaussian"
] | d6fadb717e47efb8bfa702e68717338b552cd6752c1aa7464ff4efaa854cd8cc |
import unittest
from test import support
import sys
import random
import math
# Used for lazy formatting of failure messages
class Frm(object):
def __init__(self, format, *args):
self.format = format
self.args = args
def __str__(self):
return self.format % self.args
# SHIFT should ma... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-3.1/Lib/test/test_long.py | Python | mit | 44,143 | [
"Brian"
] | ec036e5947066b3bafacc3c9da04b0d16a2e77517fdd129558f6947f38dcdb4c |
#!/usr/bin/env python
"""
Given a JSON BLAST output file, a FASTA sequence file, and interesting
criteria, write a FASTA file (to sys.stdout) of the reads that match the
criteria.
Run with --help for help.
"""
from __future__ import print_function
import sys
import argparse
from dark.reads import Reads
from dark.f... | bamueh/dark-matter | bin/filter-hits-to-fasta.py | Python | mit | 5,837 | [
"BLAST"
] | dcec46be734cf577cb6b2ba48db3d68b1820d13da3b8fd62760e7b07e33ac055 |
from distutils.core import setup
from distutils.extension import Extension
# from Cython.Distutils import build_ext
import numpy as np
import os
import re
import sys
import tensorflow as tf
tf_include = tf.sysconfig.get_include()
# gcc 4 or using already-built binary,then set USE_CXX11_ABI=1
USE_CXX11_ABI = 0
def f... | danmackinlay/AutoGP | setup.py | Python | apache-2.0 | 2,314 | [
"Gaussian"
] | f59602d4298a9b1248e2d3d2abbae0c830314b76a255ac2957c6e62597252525 |
# -*- coding: utf-8
"""Parser for HMMER's various outputs"""
import anvio
import anvio.utils as utils
import anvio.terminal as terminal
from anvio.errors import ConfigError
from anvio.parsers.base import Parser
import numpy as np
import pandas as pd
__author__ = "Developers of anvi'o (see AUTHORS.txt)"
__copyright... | merenlab/anvio | anvio/parsers/hmmscan.py | Python | gpl-3.0 | 35,794 | [
"Biopython"
] | e660ec9c04fe6dbd9a7fc859ae91ee01c014ad9349e3e4da5058f4e0509d8fb7 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'Event'
db.create_table('core_event', (
('id', self.gf('django.db.models.fields... | praekelt/txtalert | txtalert/core/migrations/0006_auto__add_event.py | Python | gpl-3.0 | 13,390 | [
"VisIt"
] | bfb50b1cc9924941591545edf8cdce217d28bd3026de3264f349d56e6a933a36 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
import sys
if sys.version_info[0] < 3:
range = xrange
class Tree(object):
"""
A tree is defined as a set of... | yeukhon/algorithm | algorithm/tree/tree.py | Python | mpl-2.0 | 2,473 | [
"VisIt"
] | 7b076eca090edc2e0e009b0ddef9abef1c8feb5790ca516cfd48a4fe5ba0a750 |
class StrictTransportSecurityAnalyzer:
def __init__(self):
pass
def analyze(self, parse_results, headers, content):
results = parse_results["Strict-Transport-Security"]
parts = []
max_age = results["max-age"]
includeSubdomains = results["includeSubDomains"]
preload = results["preload"]
if results["st... | HoLyVieR/http-security-headers | analyzer/StrictTransportSecurityAnalyzer.py | Python | mit | 1,081 | [
"VisIt"
] | d1791e7491540ed1d755468a7f8df683d4bc2a96a02e19e583e861be5c910f88 |
"""
provide a generic structure to support window functions,
similar to how we have a Groupby object
"""
from __future__ import division
import warnings
import numpy as np
from collections import defaultdict
from datetime import timedelta
from pandas.core.dtypes.generic import (
ABCSeries,
ABCDataFrame,
... | linebp/pandas | pandas/core/window.py | Python | bsd-3-clause | 68,328 | [
"Gaussian"
] | 6a2757d63acb946ba32636c58643b705d6bf519544924c88ca05c49a49dad5b7 |
"""Code for the B{0store} command-line interface."""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
from zeroinstall import _
import sys, os, errno
from zeroinstall.zerostore import manifest
from zeroinstall.zerostore.manife... | timdiels/0install | zeroinstall/zerostore/cli.py | Python | lgpl-2.1 | 7,756 | [
"VisIt"
] | a87d51b68345029b6268feadd7c5e703b5bd04c1e943155e5061d0beb18f8e4b |
"""
Check if a directed graph contains a cycle
reference:
http://codereview.stackexchange.com/questions/86021/check-if-a-directed-graph-contains-a-cycle
"""
def cyclic(graph):
"""Return True if the directed graph has a cycle.
graph must be represented as a dictionary mapping vertices to
iterables of neigh... | kwailamchan/programming-languages | python/algos/algorithms/graphs/circle/circle.py | Python | mit | 741 | [
"VisIt"
] | 5c975c310e45a8550d0ab98c474bdfab9def5f2d3a1de245bd2b647ef8635e28 |
'''
Created on Feb 9, 2015
@author: Max
'''
# What's the fastest way to evaluate a function over a grid'
import numpy as np
import datetime
import matplotlib.pyplot as plt
def gaussian(x, y, z):
return np.exp(-x ** 2 - y ** 2 - z ** 2)
# evaluate with empty arrays
xaxis = np.linspace(0, 1, 50)
yaxis = np.linsp... | MaxParsons/amo-physics | amo/optics/gridtest.py | Python | mit | 984 | [
"Gaussian"
] | 7e6ae253577cd70b16f2121ac5cbef4d40190ee683e2f1ce52c04723f6228e47 |
# $Id$
# Train a mixture of Gaussians to approximate a multi-mode dataset.
# It seems fairly easy to fall into some local minimum. Good solutions
# have errors around -200.
# This example reproduces Fig. 5.21 from Bishop (2006).
__author__ = 'Martin Felder'
import pylab as p
import numpy as np
from pybrain.structure.... | affordablewindurbines/jarvisproject | pybrain/examples/supervised/neuralnets-svm/example_mixturedensity.py | Python | gpl-3.0 | 3,548 | [
"Gaussian"
] | dd4f53760af0032139366eeee352c09090a1db9e9b44d94400690bc70e454710 |
##
# Copyright (C) 2012 Jasper Snoek, Hugo Larochelle and Ryan P. Adams
#
# This code is written for research and educational purposes only to
# supplement the paper entitled
# "Practical Bayesian Optimization of Machine Learning Algorithms"
# by Snoek, Larochelle and Adams
# Advances in Neural Information Processing... | claesenm/optunity-benchmark | optimizers/spearmint/spearmint_april2013_mod_src/gp.py | Python | gpl-3.0 | 10,627 | [
"Gaussian"
] | 41ca396a1e275225aed10bcd562b3d6eecb23b797d3ab5827ec6797eea8e7bbc |
#!/usr/bin/env python
import os, numpy as np
from pymicro.crystal.microstructure import Microstructure, Grain, Orientation
from pymicro.crystal.texture import PoleFigure
from matplotlib import pyplot as plt, colors, cm
'''
Pole figure of a gold sample containing 6 grains with a strong <111> fiber texture.
A Microstruc... | heprom/pymicro | examples/plotting/Au_6grains_pole_figure.py | Python | mit | 1,578 | [
"CRYSTAL"
] | 40d53a05f9d529c9716c58d6c1860acd0aae6573e30656638bdd4e71789f61fb |
#!/usr/bin/env python
#-----------------------------------------------------------------------------
# Copyright (c) 2013, The PyNAST Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#------------------------... | biocore/pynast | pynast/logger.py | Python | bsd-3-clause | 1,340 | [
"BLAST"
] | ca8c4ae34eec5d25478034faae343fd053a1cebdac29dc64e344912a168472dc |
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