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#!/usr/bin/python
# -*- coding: utf-8 -*-
# Pedro Rodrigues - medecau.com - medecau@gmail.com
from BeautifulSoup import BeautifulSoup
from BeautifulSoup import BeautifulStoneSoup
from csv import writer
from urllib import urlopen
'''
More info:
http://www.pinkblue.com/nomes/desc.asp?id=449
http://babynamesworld.parents... | transparenciahackday/scraper-deputados | onomastica.py | Python | mit | 1,790 | [
"VisIt"
] | c944494f2943a88bdbc2c2f0157d6d88cc32f00c3cdf543135a81911256dbe4a |
"""Kernel Tuner interface module
This module contains the main functions that Kernel Tuner
offers to its users.
Author
------
Ben van Werkhoven <b.vanwerkhoven@esciencenter.nl>
Copyright and License
---------------------
* Copyright 2016 Netherlands eScience Center
Licensed under the Apache License, Version 2.0 (th... | benvanwerkhoven/kernel_tuner | kernel_tuner/interface.py | Python | apache-2.0 | 31,740 | [
"Firefly"
] | 4c0e964865a70eaccc51724f06d1428b8b598bd36dae725276e2288017e7e56e |
#!/usr/bin/python
"""
Example script to realise a mock galaxy catalogue.
"""
import numpy as np
import pylab as P
import scipy.integrate
import sys
sys.path.append('src/')
import ghost
MHALO_MIN = 1e13 # Min. halo mass
NHALO = 100 # Number of halos to generate
np.random.seed(10)
# Load halo mass function (calculated... | philbull/ghost | realise_cat.py | Python | mit | 1,976 | [
"Galaxy"
] | fe25e7d93c7a166c9a264892d6a3b6c88856ea6d57a0d2adbe6d95eb9b4af085 |
# This file is part of the Fluggo Media Library for high-quality
# video and audio processing.
#
# Copyright 2010 Brian J. Crowell <brian@fluggo.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | fluggo/Canvas | fluggo/editor/ui/canvas/thumbnails.py | Python | gpl-3.0 | 8,528 | [
"Brian"
] | 6bafc317346b46f2f3b2a3f1adf8bc57abb701feda7f771d5ef7ef2ed51c3645 |
from __future__ import absolute_import
import math
import copy
import numpy
import scipy.ndimage.measurements
from . import lapjv
import six
from six.moves import range
from six.moves import zip
invalid_match = 1000000 # limiting the choices of the algorithms
def euclidean_dist(point1, point2):
"""Compute the E... | CellProfiler/centrosome | centrosome/neighmovetrack.py | Python | bsd-3-clause | 14,949 | [
"Brian"
] | d3019361057174caf0175fd2cdbcf302f4a318c24fcb74da937416fad555c461 |
__author__ = 'sibirrer'
from astrofunc.LensingProfiles.spep import SPEP
from astrofunc.LensingProfiles.spp import SPP
from astrofunc.LensingProfiles.sis import SIS
import numpy as np
import numpy.testing as npt
import pytest
class TestSPEP(object):
"""
tests the Gaussian methods
"""
def setup(self):
... | sibirrer/astrofunc | test/test_spp.py | Python | mit | 4,841 | [
"Gaussian"
] | 45197e4e05a45659c8b854502ea92418a9d588dfd02cacdaad4c1b1475e72c6d |
from paraview.simple import *
from paraview.web.dataset_builder import *
# Can.ex2 file path
fileToLoad = '/Users/seb/Downloads/ParaViewData-3.10.1/Data/can.ex2'
dataset_destination_path = '/tmp/can'
# Initial ParaView scene setup
can = OpenDataFile(fileToLoad)
can.ElementVariables = ['EQPS']
can.PointVariables = ['D... | Kitware/arctic-viewer | scripts/examples/paraview/samples/time-management.py | Python | bsd-3-clause | 1,511 | [
"ParaView"
] | 196d49c152121b6e24c62bb24b65dc071ac6049ddb4b82e6540367e1f1b36d09 |
#!/usr/bin/env python3
from __future__ import print_function
import os, sys, errno
from itertools import groupby
# def faidx_load_all(faidx):
# chrs = {}
# for ref in faidx.references:
# chrs[ref] = faidx.fetch(reference=ref)
# return(chrs)
# def load_fasta(path):
# faidx = pysam.FastaFile(path)
# chr... | mcveanlab/mccortex | scripts/python/mccortex.py | Python | mit | 2,254 | [
"pysam"
] | 165d72409c2fa260165f72de33c79cd8dcad46c320f6063621482f925c135a28 |
#!/usr/bin/env python
import roslib,rospy,sys,cv2,time
import numpy as np
roslib.load_manifest('lane_follower')
# from __future__ import print_function
from std_msgs.msg import Int32
from sensor_msgs.msg import Image
from cv_bridge import CvBridge, CvBridgeError
bridge = CvBridge()
pub = rospy.Publisher('lane_detectio... | isarlab-department-engineering/ros_dt_lane_follower | deprecated_nodes/old/lane_detection.py | Python | bsd-3-clause | 6,194 | [
"Gaussian"
] | a9d0733a8f4d2356467feecf4587f169b76c804bf0286cdd8e029a80d033b77f |
from django.db import models
from django.contrib.auth.models import User
from django.conf import settings
class Visit(models.Model):
student = models.ForeignKey(User, related_name='visits')
submitter = models.ForeignKey(User, related_name='submitted_visits')
campus = models.CharField(max_length=255, choice... | marklocklear/Online-Student-Profile | osp/visits/models.py | Python | lgpl-3.0 | 1,102 | [
"VisIt"
] | f91e8d69b7e1a24254cd2c862c9a367e5525a72386787b6ea987f6c55dd83b4c |
# -*- coding: utf-8 -*-
'''
Describe test for Django
@author: Laurent GAY
@organization: sd-libre.fr
@contact: info@sd-libre.fr
@copyright: 2015 sd-libre.fr
@license: This file is part of Lucterios.
Lucterios is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as... | Diacamma2/financial | diacamma/accounting/tests_accounts.py | Python | gpl-3.0 | 57,816 | [
"Dalton"
] | 19207c01d4159d4beb0de495464635220ec9dcca7bf1a0cf853f4a4492502b1b |
"""Generate html report from MNE database
"""
# Authors: Alex Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Mainak Jas <mainak@neuro.hut.fi>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import os
import os.path as op
import fnmatch
import re
import codecs
import time
from... | dimkal/mne-python | mne/report.py | Python | bsd-3-clause | 61,251 | [
"Mayavi"
] | 2e1473dbea8541e39f04dc549804568f0b7e16359a49b39be084e08e0e599f17 |
#
# Copyright (c) 2009, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyri... | rvianello/rdkit | Contrib/LEF/DistancePlot.py | Python | bsd-3-clause | 4,011 | [
"RDKit"
] | 242f2d5ddbe5a3c56a898619ded762b5e8d3cc6b178b2d0d060767d5ac79cb84 |
# coding: utf-8
from __future__ import unicode_literals
import binascii
import collections
import email
import getpass
import io
import optparse
import os
import re
import shlex
import shutil
import socket
import struct
import subprocess
import sys
import itertools
import xml.etree.ElementTree
try:
import urllib... | linglung/ytdl | youtube_dl/compat.py | Python | unlicense | 88,573 | [
"Bowtie"
] | fefa7a78a27158b717a6e6d1f45e88df1c73c8c5596d3978f31344ab76b4228b |
"""
GPoFM: Gaussian Process Training with
Optimized Feature Maps for Shift-Invariant Kernels
Github: https://github.com/MaxInGaussian/GPoFM
Author: Max W. Y. Lam [maxingaussian@gmail.com]
"""
import numpy as np
from scipy.stats import skew, norm, mstats
from scipy.optimize import minimize
__all__ = [
"Tran... | MaxInGaussian/GPoFM | GPoFM/utils/Transformer.py | Python | bsd-3-clause | 6,332 | [
"Gaussian"
] | 4118c31370357d6e7f7d1ace624e88349f5507baf99afa528272910f87b64f69 |
from vtk import vtkGenericDataObjectReader,
from vtk.util.numpy_support import vtk_to_numpy
import sys
def load_unstructured_vtu_data(input_file)
"""
Given path to unstructured grid file (vtu file format)
returns tuple of numpy arrays (coordinate_points, scalar_data)
"""
reader =... | sohrabtowfighi/py_tri_calc | vtk_local_min_max/load_vtk_unstructured_mesh.py | Python | gpl-3.0 | 755 | [
"VTK"
] | 6f652b730c1beb4cc20ab046661dd0d11f9d1b28569f2b62a7d62b5b607a87ae |
import json
import os
import time
from SWParser import *
from SWPlugin import SWPlugin
import threading
sources = {
1: 'Unknown Scroll',
2: 'Mystical Scroll',
3: 'Light & Dark Scroll',
4: 'Water Scroll',
5: 'Fire Scroll',
6: 'Wind Scroll',
7: 'Legendary Scroll',
8: 'Exclusive Summons',
9: "Legendary Pieces",
... | lstern/SWProxy-plugins | plugins/SummonLogger.py | Python | lgpl-3.0 | 3,115 | [
"CRYSTAL"
] | 2307d47d603db6e92edac5baf6ba10d175e02a208d56b6117dc338b6ffa7483e |
#
# Author: Jorg Bornschein <bornschein@fias.uni-frankfurt.de)
# Lincense: Academic Free License (AFL) v3.0
#
"""
Provide simple bar-pattern generator.
"""
from __future__ import division
__author__ = "Joerg Bornschein <bornschein@fias.uni-frankfurt.de>"
import numpy as np
def generate(num, size, p_bar):... | jbornschein/mca-genmodel | pulp/utils/bargen.py | Python | agpl-3.0 | 1,857 | [
"Gaussian"
] | 1b522cd2647201951d9d1f9df679d47a95179082422fb58a22310134a8bdc304 |
#!/usr/bin/python
# file: formatter.py
# author: Andrea Vedaldi
# description: Utility to format MATLAB comments.
# Copyright (C) 2007-12 Andrea Vedaldi and Brian Fulkerson.
# All rights reserved.
#
# This file is part of the VLFeat library and is made available under
# the terms of the BSD license (see th... | hustcalm/whatsprogrammer | computer-vision/SFMedu/SFMedu/lib/vlfeat/docsrc/formatter.py | Python | mit | 17,497 | [
"Brian"
] | ca5926921261081e16c7ea7ceacacfb18bd650f6b5c0788a206ef4d266db5f13 |
from __future__ import absolute_import, division, print_function
from operator import add
from itertools import chain
def inc(x):
return x + 1
def ishashable(x):
""" Is x hashable?
Example
-------
>>> ishashable(1)
True
>>> ishashable([1])
False
"""
try:
hash(x)
... | PeterDSteinberg/dask | dask/core.py | Python | bsd-3-clause | 9,803 | [
"VisIt"
] | 5f67454967ae72eaa72f5c90a2c28f2e91f645080fa91899da2910779086acd8 |
#!/usr/bin/env python
'''
Master loader for all Coordinated Canyon Experiment data
from October 2015 through 2016
Mike McCann
MBARI 26 January March 2016
'''
import os
import sys
parent_dir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parent_dir) # So that CCE is found
from CCE import CCELoad... | danellecline/stoqs | stoqs/loaders/CCE/loadCCE_2015.py | Python | gpl-3.0 | 29,595 | [
"NetCDF"
] | 89b6136d6760b013bc8e7af6e89558a750195bcd922fb42759b18decdb6160b8 |
# TODO: to be transformed into a real test
########################################################################
# File: ReplicateAndRegisterTests.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/05/13 18:38:55
########################################################################
""" :mod: FullChainTest
... | DIRACGrid/DIRAC | tests/Integration/RequestManagementSystem/FIXME_IntegrationFCT.py | Python | gpl-3.0 | 6,376 | [
"DIRAC"
] | 6f983845d1d70dfe044a6bbaf7314b64bd36dec013b4eb65a8c53af0d53ae25c |
'''
Usage:
This programme is to creating the netcdf file corresponding to the 24, 48...120 hr forcast and observed rainfall data of rainfall data.
Written by: Dileepkumar R
JRF- IIT DELHI
Date: 23.06.2011;
'''
import numpy.ma
import ctgfunction
import data_access
import cdms2
import cdutil
from regrid2 i... | arulalant/mmDiagnosis | diagnosis1/extra/pygrib_code/rainfall_regrid_generating_nc.py | Python | gpl-3.0 | 1,210 | [
"NetCDF"
] | 58ecd3b32bd1cb25c3f29c48dd2a7b13befa2980f14e5f8d99035886669ac5af |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Extract neural activity from a fluorescence trace using a constrained deconvolution approach
Created on Tue Sep 1 16:11:25 2015
@author: Eftychios A. Pnevmatikakis, based on an implementation by T. Machado, Andrea Giovannucci & Ben Deverett
"""
from builtins import ... | simonsfoundation/CaImAn | caiman/source_extraction/cnmf/deconvolution.py | Python | gpl-2.0 | 39,506 | [
"NEURON"
] | 62b35dc5dff5b7f4aa999f67fbc31c9032c23f815325eefc460e04bf18e2d781 |
#import sys, os
#sys.path.insert(0, '/media/nmsutton/Ext3Drive/General/NEST/NEST/lib64/python3.4/site-packages')
#print (os.path.dirname(sys.executable))
#print (os.environ)
import pylab
import nest
print ("test")
neuron = nest.Create("iaf_neuron")
neuron2 = nest.Create("iaf_neuron")
neuron3 = nest.Create("iaf_neur... | nmsutton/MemoryModule | python_version/examples/nestTestSynapses3.py | Python | mit | 1,457 | [
"NEURON"
] | 4ee823b883dee44ca832d6497e9d000ad765cb41158653a04799939c3c7c05b3 |
# try using distribute or setuptools or distutils.
try:
import distribute_setup
distribute_setup.use_setuptools()
except ImportError:
pass
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
import sys
import re
# parse version from package/module without impor... | widdowquinn/THAPBI | Phy_ITS_ident_pipline_DRAFT/setup.py | Python | mit | 1,969 | [
"Biopython"
] | 7f536b04b6cc91c97babd87ed4e20981ad61ae2eb83ca6f50167e33ab8461f20 |
# Copyright 2006-2007 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
#Nice link:
# http://www.ebi.ac.uk/help/formats_frame.html
"""Sequence input/output design... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/SeqIO/__init__.py | Python | apache-2.0 | 76,925 | [
"BioPerl",
"Biopython"
] | bc2f02b5c80fc29a59afaaf537b7c096fddc599c3e06f39c94d952d28fa8904a |
#!/usr/bin/env python
"""
Complete pipeline for motion correction, source extraction, and deconvolution
of one photon microendoscopic calcium imaging data using the CaImAn package.
The demo demonstrates how to use the params, MotionCorrect and cnmf objects
for processing 1p microendoscopic data. The analysis pipeline ... | agiovann/Constrained_NMF | demos/general/demo_pipeline_cnmfE.py | Python | gpl-2.0 | 11,895 | [
"Gaussian",
"NEURON"
] | d46aea15093d7fc9d6adab57c5b8f9c6eda9db2f513c25089e925a29f3b7733a |
#!/usr/bin/env python
# generate Python Manifest for the OpenEmbedded build system
# (C) 2002-2010 Michael 'Mickey' Lauer <mlauer@vanille-media.de>
# (C) 2007 Jeremy Laine
# licensed under MIT, see COPYING.MIT
#
# June 22, 2011 -- Mark Hatle <mark.hatle@windriver.com>
# * Updated to no longer generate special -dbg pa... | PhiInnovations/mdp28-linux-bsp | scripts/contrib/python/generate-manifest-2.7.py | Python | mit | 16,090 | [
"VisIt"
] | c756c984238e9e78b9b1846ce6657aed3d993f3443434e8441375fa9f4ef0563 |
#
# Copyright 2008, 2009 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of t... | dursobr/Pythics | pythics/instruments/keithley_2000.py | Python | gpl-3.0 | 18,103 | [
"Brian"
] | 96fb61cd15ab4f52326bed69396ad6a8b79052d49d1b0e1f989177d3481e859c |
"""
Created on Mar 17, 2014
@author: tjoneslo
"""
import logging
import math
from wikistats import WikiStats
from collections import OrderedDict, defaultdict
from AllyGen import AllyGen
from Star import UWPCodes
class Populations(object):
def __init__(self):
self.code = ""
self.homeworlds = []
... | makhidkarun/traveller_pyroute | PyRoute/StatCalculation.py | Python | mit | 14,360 | [
"Galaxy"
] | 79f20f325b7305c8a6f6862e14d2332d0b820edc9b8af48597a7273279500325 |
# -*- coding: utf-8 -*-
# This file is part of Shuup.
#
# Copyright (c) 2012-2016, Shoop Ltd. All rights reserved.
#
# This source code is licensed under the AGPLv3 license found in the
# LICENSE file in the root directory of this source tree.
import os
import pytest
from django.core.urlresolvers import reverse
from ... | shawnadelic/shuup | shuup_tests/browser/admin/test_order_list.py | Python | agpl-3.0 | 3,065 | [
"VisIt"
] | efb41eff49bcde75a3b21146e977730482d0b4ffe5eeda5d8307d647ca9052c8 |
# Copyright (C) 2011-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/ek_eof_one_species_x.py | Python | gpl-3.0 | 1,244 | [
"ESPResSo"
] | 414a03612f7e8372da82cbc00af7c59d2883d7e2c13c984202131d3ffce05ba0 |
"""Display a rotomap."""
import enum
import functools
import sys
import cv2
import numpy
import mel.lib.common
import mel.lib.fullscreenui
import mel.lib.image
import mel.rotomap.detectmoles
import mel.rotomap.mask
import mel.rotomap.moles
import mel.rotomap.relate
import mel.rotomap.tricolour
DEFAULT_MASKER_RADIUS... | aevri/mel | mel/rotomap/display.py | Python | apache-2.0 | 26,545 | [
"VisIt"
] | 84642d32cafce63a9ac5c986dde656fdd949be848bb067b3b51b5b4b828b3dcd |
def vector_product3(a, b):
"""Computes and returns the vector product of vectors a and b."""
return [a[1] * b[2] - a[2] * b[1],
a[2] * b[0] - a[0] * b[2],
a[0] * b[1] - a[1] * b[0]]
def seq_mult_scalar(a, s):
"""Returns a list of the products of s with the values in list a."""
... | Xorgon/Computing-Labs | lab5.py | Python | mit | 787 | [
"Amber"
] | 38e5a6a7f41a6240440d88d209a130d28796157051b211f5f3f9143749ac215f |
# -*- coding: utf-8 -*-
#
# inhibitory_network.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Lice... | uahic/nest-simulator | examples/nest/gap_junction/inhibitory_network.py | Python | gpl-2.0 | 4,388 | [
"NEURON"
] | 9800c7201296116b8b8e8b70312ca556700d5706130e8391cca1223e5a94570f |
# Author: Travis Oliphant
# 2003
#
# Feb. 2010: Updated by Warren Weckesser:
# Rewrote much of chirp()
# Added sweep_poly()
from __future__ import division, print_function, absolute_import
import numpy as np
from numpy import asarray, zeros, place, nan, mod, pi, extract, log, sqrt, \
exp, cos, sin, polyval, po... | gfyoung/scipy | scipy/signal/waveforms.py | Python | bsd-3-clause | 21,071 | [
"Gaussian"
] | 54ce0cc9a8db11d53911bca5897a3a81f1e129ae790faef488ce65781367c9bb |
######################################################################
##
## Copyright 2010-2011 Ondrej Certik <ondrej@certik.cz>
## Copyright 2010-2011 Mateusz Paprocki <mattpap@gmail.com>
## Copyright 2011 Christian Iversen <ci@sikkerhed.org>
##
## Permission is hereby granted, free of charge, to any person
## obtain... | buchuki/pyjaco | pyjaco/compiler/__init__.py | Python | mit | 4,278 | [
"VisIt"
] | 99e3c21e7b3d23b75da05949a55bbd5b154753bbdb8adb7729d437f70703b821 |
import numpy as np
from gpaw import GPAW
from gpaw.dipole_correction import DipoleCorrection
from gpaw.poisson import PoissonSolver
from ase.structure import molecule
from gpaw.mpi import rank
from gpaw.utilities import h2gpts
"""
Test the dipole correction code by comparing this system:
H
z1 O z2
H
(wh... | robwarm/gpaw-symm | gpaw/test/dipole.py | Python | gpl-3.0 | 2,744 | [
"ASE",
"GPAW"
] | cc1f72dc23f5891e606cf66cf629f49b98da44b636e18f17fb87017957c9c7be |
# Copyright (c) 2012 ARM Limited
# All rights reserved.
#
# The license below extends only to copyright in the software and shall
# not be construed as granting a license to any other intellectual
# property including but not limited to intellectual property relating
# to a hardware implementation of the functionality ... | xiaoyuanW/gem5 | src/python/m5/SimObject.py | Python | bsd-3-clause | 47,683 | [
"VisIt"
] | 654829b31bbff99502bc1763c4acf2f60296d14e33e6b547570a31fabfc1517f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
class Room(object):
def __init__(self, name, description):
self.name = name
self.description = description
self.paths = {}
def go(self, direction):
return self.paths.get(direction, None)
def add_paths(self, paths):
... | renweizhukov/LearningPythonTheHardWay | projects/gothonweb/gothonweb/map.py | Python | lgpl-3.0 | 4,166 | [
"BLAST"
] | b0e5758651b7abcb000a4d85871ea5bce7629ffcdf6c3dbdfec64bcea3dea41f |
""" The SystemAdministratorClient is a class representing the client of the DIRAC
SystemAdministrator service. It has also methods to update the Configuration
Service with the DIRAC components options
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_functio... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Client/SystemAdministratorClient.py | Python | gpl-3.0 | 835 | [
"DIRAC"
] | 01b8916e42eaff16d3d1d51ee8f544a010b10aeda37bd5dc1429a018ea41b5bd |
#!/usr/bin/python2
#
# Copyright 2006 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | sdgdsffdsfff/google-mysql-tools | trickle_file_runner.py | Python | apache-2.0 | 11,334 | [
"Brian"
] | fb7f3916251498f58aca531405c85d00f2f760b1f02aa93fc200856508e48a65 |
# -*- coding: utf-8 -*-
# Code for Life
#
# Copyright (C) 2015, Ocado Innovation Limited
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at your o... | mikebryant/rapid-router | game/messages.py | Python | agpl-3.0 | 72,358 | [
"VisIt"
] | 5e5b5bfcdc66ce2e0a6e36239a826f7f7501fdb82d33b7d261cc14aa9a1f01a2 |
# -*- coding: utf-8 -*-
"""
Regression tests for the Test Client, especially the customized assertions.
"""
from __future__ import unicode_literals
import os
import itertools
from django.core.urlresolvers import reverse, NoReverseMatch
from django.template import TemplateSyntaxError, Context, Template
import django.t... | PolicyStat/django | tests/test_client_regress/tests.py | Python | bsd-3-clause | 65,886 | [
"VisIt"
] | 0e7df31d209be5a92830ab7dbc5434ed921bbceb8c340ae6d57e0e9dcc6ab2b4 |
from models.sampler import BlockGibbsSampler
from models.distribution import GaussianBinary
from models.optimizer import SGD
from models.rbm import RBM
from data.mnist.path import *
from utils.utils import prepare_batches
from matplotlib import pyplot
import sklearn.preprocessing as pre
import pandas, numpy, time
SIZE... | deprofundis/deprofundis | models/scripts/example_gaussian.py | Python | mit | 1,682 | [
"Gaussian"
] | 6a02348e8641fb2d52192a9747d1805e270270a12c5741a1901c62c3fe749c44 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/core/lib/spelltextedit.py | Python | gpl-2.0 | 9,166 | [
"Brian"
] | b95d1fe83779415534c0c2904d427fcf66ac5cf3f7241fcbc4ca7c97f85bebfa |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
import shutil
import os
import ansible.constants as C
from ansible.galaxy import Galaxy
from ansible.galaxy.role import GalaxyRole
from ansible.playbook.role.requirement import RoleRequirement
import ruamel.yaml
from ruamel.yaml.comments import Commented... | chouseknecht/ansible-container | container/utils/galaxy.py | Python | lgpl-3.0 | 8,139 | [
"Galaxy"
] | 64f98b24f5b7304d10fa16afebb3930521075a5706be67169a88f61b65617141 |
# Maked by Mr. Have fun! Version 0.2
# Shadow Weapon Coupons contributed by BiTi for the Official L2J Datapack Project
# Visit http://forum.l2jdp.com for more details
import sys
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import QuestState
from com.l2scoria.gameserver.... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/405_PathToCleric/__init__.py | Python | gpl-3.0 | 8,825 | [
"VisIt"
] | ca4a001c43f18fb4479fff5c97ff105ca90fb887c04bfe6dd0f54946725d5cd2 |
"""
AGNEXTRACT
extract galaxy spectra from image or images and combine them
"""
import os, sys, glob, shutil
import numpy as np
from scipy.ndimage.filters import median_filter
from astropy.io import fits
from PySpectrograph.Spectra import findobj, Spectrum
import argparse
import pylab as pl
def extract(dat... | saltastro/polsalt | scripts/pol_extract.py | Python | bsd-3-clause | 4,155 | [
"Galaxy"
] | de07c3edc1ea97c8973b2488d0b494a86cef41db364e4e3ff45e2fcc3ba81507 |
import matplotlib.pyplot as plt
#%matplotlib inline
import nengo
import numpy as np
import scipy.ndimage
import matplotlib.animation as animation
from matplotlib import pylab
from PIL import Image
import nengo.spa as spa
import cPickle
from nengo_extras.data import load_mnist
from nengo_extras.vision import Gabor, Mas... | science-of-imagination/nengo-buffer | Project/mental_rotation_training_clockwise_noise.py | Python | gpl-3.0 | 6,433 | [
"NEURON"
] | 7e33fe5e3fac24d45092da3e349fe2b16716404d4faad2df456129f2de0bf56c |
"""PyZMQ and 0MQ version functions."""
#-----------------------------------------------------------------------------
# Copyright (C) 2013 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, distribut... | IsCoolEntertainment/debpkg_python-pyzmq | zmq/sugar/version.py | Python | lgpl-3.0 | 1,754 | [
"Brian"
] | d2c362d128d6a23bb9cd1792a278622b964a046eccdf9dcf915c088e8e5301c3 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from be... | frRoy/Benchmarklib | config/urls.py | Python | bsd-3-clause | 1,489 | [
"VisIt"
] | fb5949358fe931a0e2b88ed2110a6e7a6a6be020d45d1be63ed66aa0c23e60e9 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2011, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | zenoss/ZenPacks.zenoss.CloudStack | ZenPacks/zenoss/CloudStack/routers.py | Python | gpl-2.0 | 1,285 | [
"VisIt"
] | 3875998c7fde1dd4871f1bb06a5549f1a06a8f0c84d8da35266ff253b276d577 |
from datetime import date
EVENTS = {
"2017 Big Fun Run Liverpool": ("5k", date(2017, 8, 12)),
"2017 Dog Jog Liverpool": ("5k", date(2017, 8, 12)),
"2017 Big Fun Run Sheffield": ("5k", date(2017, 8, 13)),
"2017 Dog Jog Sheffield": ("5k", date(2017, 8, 13)),
"2017 Big Fun Run Derby": ("5k", date(2017... | benranderson/training-plan | app/main/events.py | Python | mit | 2,809 | [
"CRYSTAL"
] | 0a50d698f6b02b9aae05f8d1f3e0b2a540840c261535897d2da97d286f4089d2 |
# Copyright 2007 by Tiago Antao <tiagoantao@gmail.com>. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""This module allows you to control fdist (DEPRECATED).
This will allow... | zjuchenyuan/BioWeb | Lib/Bio/PopGen/FDist/Controller.py | Python | mit | 10,699 | [
"Biopython"
] | 8fcd55bddb081a96051358feb8acf0fd7262fed61221000d1c80a8c1a5c8ecff |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""The minc module provides classes for interfacing with the `MINC
<http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC>`_ command line tools. This
module was written to work with MINC version 2.2.00.
Auth... | FCP-INDI/nipype | nipype/interfaces/minc/base.py | Python | bsd-3-clause | 3,938 | [
"NetCDF"
] | dc79301eb57a9d0805b183647d66044a1a04ac48da2eb5ff06eacee81536b979 |
# GromacsWrapper: xpm.py
# Copyright (c) 2012 Oliver Beckstein <orbeckst@gmail.com>
# Copyright (c) 2010 Tsjerk Wassenaar <tsjerkw@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
"""
Gromacs XPM file format
=======================
Gromacs stores matrix ... | Becksteinlab/GromacsWrapper | gromacs/fileformats/xpm.py | Python | gpl-3.0 | 10,360 | [
"Gromacs"
] | 6c3368a69cbc889350b55a0a76501af6fb869522933c08f6367bcf721d1f6cda |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | espressomd/espresso | testsuite/python/elc.py | Python | gpl-3.0 | 2,980 | [
"ESPResSo"
] | a87c37b4c24bee83ce38201bdf41e15682e18295f1b8ebbc77035b205e1a2a32 |
import pygrib
import matplotlib.pyplot as plt
import numpy as np
from numpy import ma
from mpl_toolkits.basemap import Basemap
for grb in pygrib.open('../sampledata/ecmwf_tigge.grb'):
if grb['parameterName'] == 'Soil moisture':
fld = grb['values']
lats,lons = grb.latlons()
break
#from ncepg... | erdc-cm/pygrib | test/test_ectigge.py | Python | isc | 1,094 | [
"Gaussian"
] | 6902524c46517b35aa702216a1b853d6f9b7e755753ae2cbd0c5f74b630b58ad |
# Default Django settings. Override these with settings in the module
# pointed-to by the DJANGO_SETTINGS_MODULE environment variable.
# This is defined here as a do-nothing function because we can't import
# django.utils.translation -- that module depends on the settings.
gettext_noop = lambda s: s
#################... | weigj/django-multidb | django/conf/global_settings.py | Python | bsd-3-clause | 14,671 | [
"VisIt"
] | 3ecf32cab0c367d604b8c98576ebc7f8a59be9f91786e33e76551f3ce4fadc31 |
# The OARN Relief Nursery Database
# Copyright (C) 2015 Oregon Association of Relief Nurseries
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, or (at... | wire-rabbit/oarn-database | oarndb/tests/test_home_visit_views.py | Python | agpl-3.0 | 18,444 | [
"VisIt"
] | 65c8dfd63ecd74f112f9980b5e0083e8416ee0f456a3cc786c24f6a9d5f6a684 |
import bisect
from . import vmdutil
from . import vmddef
from . import pmxutil
from . import pmxdef
def get_global_transform(this_transform, this_bone_def,
parent_transform, parent_bone_def, parent_global,
additional_transform=None):
""" Compute the global rotati... | Hashi4/vmdgadgets | vmdgadgets/vmdutil/vmdmotion.py | Python | apache-2.0 | 16,940 | [
"VMD"
] | e4c0abf5c22f8ae9516cf321d0b8c1de914154cb904734703ac71b5fd1ee8de9 |
# Lint as: python3
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | davidzchen/tensorflow | tensorflow/python/eager/gradient_input_output_exclusions.py | Python | apache-2.0 | 12,833 | [
"VisIt"
] | 68cc7a7ce4dfaf63b477e94df55ec9261a5d89b7f6533697aa1ddbbd723599f8 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2014, Paweł Wodnicki
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright
# notice, t... | 32bitmicro/EDA | python/eda/designs/stm32dip40/stm32dip40_schematic.py | Python | bsd-3-clause | 28,020 | [
"CRYSTAL"
] | 3811378b6cf40cd57a99304a568c72559d545929d29a42d06be31d7dfee6a238 |
####
# This sample is published as part of the blog article at www.toptal.com/blog
# Visit www.toptal.com/blog and subscribe to our newsletter to read great posts
####
import logging
import os
from queue import Queue
from threading import Thread
from time import time
from download import setup_download_dir, get_links... | volker48/python-concurrency | threading_imgur.py | Python | mit | 1,787 | [
"VisIt"
] | dd6e194cd99a6774dd134e04376c22f486836b9b55276d3f89b3fcfd52374ff3 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | dgasmith/psi4 | psi4/driver/procrouting/response/scf_response.py | Python | lgpl-3.0 | 28,511 | [
"Psi4"
] | a09bf8b59f255aad801a97884fa71e4ea8a50ca6ee75dad59553ac9bf6998163 |
# -*- coding: utf-8 -*-
############################################################################
#
# Copyright (C) 2008-2014
# Christian Kohlöffel
# Vinzenz Schulz
#
# This file is part of DXF2GCODE.
#
# DXF2GCODE is free software: you can redistribute it and/or modify
# it under the terms o... | oryxr/dxf2gcode | DxfImport/GeoentSpline.py | Python | gpl-3.0 | 7,416 | [
"Gaussian"
] | 22525c4062f5b4bec328f9c1bc06b1cb6d0624c842bebe0c5771f0c551c2466b |
# -*- coding: utf-8 -*-
# Copyright 2017 GIG Technology NV
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | rogerthat-platform/rogerthat-backend | src/rogerthat/pages/unsubscribe_reminder_service.py | Python | apache-2.0 | 11,107 | [
"VisIt"
] | e042052277e8404abffc7b11c263d2e654c0a42a64a5a2060fff7e6a68ff533a |
#!/usr/bin/env python
"""
voice_nav.py allows controlling a mobile base using simple speech commands.
Based on the voice_cmd_vel.py script by Michael Ferguson in the pocketsphinx ROS package.
"""
import roslib; #roslib.load_manifest('pi_speech_tutorial')
import rospy
from geometry_msgs.msg import Twist
from std_... | jdekerautem/TurtleBot-Receptionist | pocketsphinx_files/talkative.py | Python | mit | 8,719 | [
"VisIt"
] | 5fefe048e7d2edf7a695ed2b2aa990efa11cc99d83e964f971296aad35ebb23e |
"""
Sphinx plugins for Django documentation.
"""
import json
import os
import re
from docutils import nodes
from docutils.parsers.rst import directives
from sphinx import addnodes, __version__ as sphinx_ver
from sphinx.builders.html import StandaloneHTMLBuilder
from sphinx.writers.html import SmartyPantsHTMLTranslato... | rogerhu/django | docs/_ext/djangodocs.py | Python | bsd-3-clause | 11,809 | [
"VisIt"
] | c0551fd5925f81303db0cbb869b3b8a7d24dda74b8f7c5d31cf1287fc4c003c7 |
# (C) British Crown Copyright 2010 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | mo-g/iris | lib/iris/tests/test_plot.py | Python | gpl-3.0 | 32,082 | [
"NetCDF"
] | 7b7b3e62fc84eaa2e6b4ca603e651a0ecf7595a85d2eb04acb508fc04fb8a2bd |
# Hidden Markov Model Implementation
import math
import pylab as pyl
import numpy as np
import matplotlib.pyplot as pp
import matplotlib.cm as cm
#from enthought.mayavi import mlab
import scipy as scp
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import rospy
#import hrl_lib... | tapomayukh/projects_in_python | rapid_categorization/fixed_length_training_data/hmm_force_10_states.py | Python | mit | 8,710 | [
"Gaussian",
"Mayavi"
] | 23649bdc5e49bcff44faf9d94b11b3574aeb1632c0d2188ccc8649dbead6e388 |
# kchannel.py ---
#
# Filename: kchannel.py
# Description:
# Author: Subhasis Ray
# Maintainer:
# Created: Wed Jun 4 12:30:31 2014 (+0530)
# Version:
# Last-Updated:
# By:
# Update #: 0
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
#
#
#
# Change log:
#
#
#
#
# This progr... | subhacom/moose-core | tests/python/mus/kchannel.py | Python | gpl-3.0 | 5,916 | [
"MOOSE",
"NEURON"
] | 08e03cf85a446a700052bb36c513fdaefc5be2c2a7de41cfcf01f4c11c08d01a |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/pipeline/api/keras/layers/noise.py | Python | apache-2.0 | 3,021 | [
"Gaussian"
] | d13779a97d36836fd34635d22ebe9fdb6713ab41024cca8dc6fbbcc8f8a173fe |
import ctypes
from ..codeprinter import CodePrinter
from .. import expression as e
from .. import functions as f
import expresso.visitor as visitor
from mpmath import mp
class c_complex(ctypes.Structure):
_fields_ = [('real',ctypes.c_double),('imag',ctypes.c_double)]
def __str__(self):
return str(sel... | TheLartians/Expresso | expresso/pycas/compilers/c_compiler.py | Python | mit | 17,186 | [
"VisIt"
] | b5be8805a1e4ea7924ef1bcd431c3099101ab552c5611e9d9dee7e5c4eacd04d |
# Author: Kyle A. Beauchamp <kyleabeauchamp@gmail.com>
# Contributors: Robert McGibbon <rmcgibbo@gmail.com>,
# Matthew Harrigan <matthew.p.harrigan@gmail.com>
# Copyright (c) 2014, Stanford University and the Authors
# All rights reserved.
#----------------------------------------------------------------... | dotsdl/msmbuilder | msmbuilder/featurizer/featurizer.py | Python | lgpl-2.1 | 27,412 | [
"Gaussian",
"MDTraj"
] | 77a46d17c09c3119754fd8819cdd220397f6321fb1834067d05cc05d370a6056 |
#* This file is part of Zapdos, an open-source
#* application for the simulation of plasmas
#* https://github.com/shannon-lab/zapdos
#*
#* Zapdos is powered by the MOOSE Framework
#* https://www.mooseframework.org
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.htm... | lindsayad/zapdos | problems/PetscJacobians.py | Python | lgpl-2.1 | 4,310 | [
"MOOSE"
] | 5642969b821183807770e19b38f0b18ee100463384a1bcb882036c117a569fb5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Find synonymous and non-synonymous SNP variants in fasta alignments
__authors__ = "Eric Normandeau"
__program_name__ = "synonym_storm"
__version_info__ = ('0', '0', '3')
__version__ = '.'.join(__version_info__)
__revision_date__ = "2010-06-14"
# Importing modules
impor... | wkh124/wkh124 | snp_synonymy_explorer.py | Python | gpl-3.0 | 10,895 | [
"Biopython"
] | 8faf2ccc957aded51d9abef58b4367b7449c9502d5920148816b723980666b8a |
"""test_analysis.py - test the analysis server framework
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please see the AUTHORS f... | sstoma/CellProfiler | cellprofiler/tests/test_analysis.py | Python | gpl-2.0 | 60,855 | [
"Gaussian"
] | 8f908122a57969b0b46d2aedf9f8763cfe4c2b04450a977966095ecd76165a99 |
# -*- coding: utf-8 -*-
"""
Cython related magics.
Author:
* Brian Granger
Parts of this code were taken from Cython.inline.
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2010-2011, IPython Development Team.
#
# Distributed under the terms of the Modified BSD Licen... | cloud9ers/gurumate | environment/lib/python2.7/site-packages/IPython/extensions/cythonmagic.py | Python | lgpl-3.0 | 7,191 | [
"Brian"
] | 4bd609ad02b57a25988e3e4031b55276e89c89feee2f4da7f4dcac528b893b7a |
from __future__ import (absolute_import, division, print_function)
import unittest
from mantid.simpleapi import (DeleteWorkspace, CreateSampleWorkspace,
AddSampleLog, EditInstrumentGeometry,
CloneWorkspace, CompareWorkspaces, FindEPP)
from testhelpers import ... | ScreamingUdder/mantid | Framework/PythonInterface/test/python/plugins/algorithms/ComputeCalibrationCoefVanTest.py | Python | gpl-3.0 | 7,519 | [
"Gaussian"
] | c2323bc740a42eb71b96ba543db96eb93d1123e4e7dd7e3287ce0047e29a9a4f |
# ----------------------------------------------------------------------------
# Copyright 2015-2016 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apa... | Jokeren/neon | tests/test_gru.py | Python | apache-2.0 | 16,734 | [
"Gaussian"
] | a04b8fd81fdbe3586a64a11c1b855d81a314d779074704ecca9b3e1552961859 |
import numpy as np
import h5py
import matplotlib.pyplot as plt
import os
def input_layer(input_center, neuron_center, x_sigma, x_d_sigma):
rj = np.exp((-(input_center[0] - neuron_center[0]) ** 2) /
x_sigma - ((input_center[1] - neuron_center[1]) ** 2) /
x_d_sigma)
return rj
e... | cigani/RL | naviMap.py | Python | mit | 2,664 | [
"NEURON"
] | 1e799a2d37608a5fe7d49e57f5611125555152f1d40fe848614c01fc7b7534b4 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright 2013 The Plaso Project Authors.
# Please see the AUTHORS file for details on individual authors.
#
# Licensed under the Apache License, Version 2.0 (the 'License');
# you may not use this file except in compliance with the License.
# You may obtain a copy of the L... | cvandeplas/plaso | plaso/parsers/winjob_test.py | Python | apache-2.0 | 3,780 | [
"Brian"
] | b1382034866f0294f8f7965bfd134cf20c6221ff53fbd8b15ca2c2fa77b05ce9 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
import numpy as np
from sisl._internal import set_module
from sisl import Geometry, SuperCell
from ._common import geom... | zerothi/sisl | sisl/geom/basic.py | Python | mpl-2.0 | 5,139 | [
"CRYSTAL"
] | cfb5c781c1c5a2f24d4926511e07f33e47a12f3d890c2dc4d8dcf3cfbadd9acd |
import argparse
import sys
from ..utilities.log_utils import create_default_logger
from ..configuration.daijin_configurator import create_daijin_config
from .mikado import mikado_pipeline
from .assemble import assemble_transcripts_pipeline
from . import create_parser, create_config_parser
def main(call_args=None):
... | lucventurini/mikado | Mikado/daijin/__main__.py | Python | lgpl-3.0 | 3,818 | [
"BLAST"
] | 089075338d5377ccf4c6f48350174390544fe90541bf06f79a0c8083d3a274d4 |
#!/usr/bin/env python
# encoding: utf-8
"""
Defines various nose unit tests
"""
import numpy as np
from .mh import MHSampler
from .ensemble import EnsembleSampler
from .ptsampler import PTSampler
logprecision = -4
def lnprob_gaussian(x, icov):
return -np.dot(x, np.dot(icov, x)) / 2.0
def lnprob_gaussian_nan... | tbs1980/emcee | emcee/tests.py | Python | mit | 8,459 | [
"Gaussian"
] | 222c64cff0cef89ab8e3816a988d8cffffc9a8957183adebe8ac895847ed5c62 |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | kaarolch/ansible | lib/ansible/constants.py | Python | gpl-3.0 | 28,089 | [
"Galaxy",
"MOOSE"
] | dbf337f47b8303fa3207249bd1acbc8ff0890dd2a24734f34a2ce732b4578d3a |
import shutil
import sys
import os
import re
import io
import traceback
from pybtex.plugin import find_plugin
from pybtex.database import BibliographyData, parse_file
from pybtex.database.input.bibtex import UndefinedMacro as undefined_macro_exception
import MooseDocs
from MooseCommonExtension import MooseCommonExtens... | paulthulstrup/moose | python/MooseDocs/extensions/MooseBibtex.py | Python | lgpl-2.1 | 5,982 | [
"MOOSE"
] | 4c48649e853e41979ba85d597e2792f11a8f674b0995d5ca8155c4fdcf9efe62 |
# Emacs: treat this as -*- python -*-
import os
import gtk
import pango
import tempfile
from math import cos, sin, sqrt, atan, atan2
from os.path import basename
import numpy as np
from ase.data import chemical_symbols
from ase.data.colors import jmol_colors
from ase.gui.repeat import Repeat
from ase.gui.rotate impo... | PHOTOX/fuase | ase/ase/gui/view.py | Python | gpl-2.0 | 34,755 | [
"ASE",
"Avogadro",
"Jmol",
"RasMol",
"VMD"
] | 562df89544b9be8c14b9ed0c27a262a973d673258597628017d9776518603f4a |
# -*- coding: utf-8 -*-
"""
Library of functions for simulated data creation
Created on 07/04/2016
@author: Anderson Brito da Silva & Jan Cimbalnik
"""
import numpy as np
import scipy.signal as sig
from scipy.stats import norm
# %% Noise types
def pinknoise(N):
"""
Create a pink noise (1/f) with N points.
... | HFO-detect/HFO-detect-python | pyhfo_detect/sim/create_simulated.py | Python | bsd-3-clause | 6,496 | [
"Gaussian"
] | fae9dfcd15754b40dc78346d3da7d804075928b4faa3dd94de279d81627cd01c |
# Routines for reading and plotting to produce comparable figures to the SAGE paper
from pylab import *
from scipy import signal as ss
def galdtype():
# Define the data-type for the public version of SAGE
Galdesc_full = [
('SnapNum' , np.int32),
('Type' , ... | darrencroton/sage | output/plot_read_routines.py | Python | mit | 16,817 | [
"Galaxy"
] | 3f94e19663d856a31d5ab2cbe271928546abb4719c2d398f34b3323cb82013d3 |
#!/usr/bin/env python
"""
refguide_check.py [OPTIONS] [-- ARGS]
Check for a Scipy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
Example of usage::
$ python refguide_check.py optimize
Note that this is a helper script to be able to check if things ar... | arokem/scipy | tools/refguide_check.py | Python | bsd-3-clause | 31,105 | [
"Gaussian"
] | 1791233b9c16cb791859f0258c7990312d1ed13061920df7026c10d4cb14d33b |
# -*- coding: iso-8859-15 -*-
import unittest
from mycroft.util.parse import normalize
from mycroft.util.parse import get_gender
from mycroft.util.parse import extractnumber
from mycroft.util.parse import extract_datetime
from datetime import datetime
class TestNormalize(unittest.TestCase):
def test_articles(s... | JarbasAI/JarbasAI | test/unittests/util/test_parse.py | Python | gpl-3.0 | 31,587 | [
"VisIt"
] | a7957734f114462809d704a554a0a46cb24e6f129a56557f34abb57214697f66 |
"""Script for building StarFusion indices using FusionFilter."""
import argparse
import gzip
import logging
from pathlib import Path
import shutil
import subprocess
FORMAT = "[%(asctime)-15s] %(message)s"
logging.basicConfig(format=FORMAT, level=logging.INFO)
def main():
"""Main function."""
args = parse_a... | NKI-CCB/imfusion | scripts/starfusion_build_reference.py | Python | mit | 4,048 | [
"BLAST"
] | c46c7785ad43d8e0e45c76f4f2c596c5f8c3868238b8149967e9ee06c355dc4d |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/driver/procrouting/wrappers_cfour.py | Python | gpl-2.0 | 36,674 | [
"CFOUR",
"Psi4"
] | 825f8e715125f0dcfb3031c0b8f3eae8f0d83a1cc561cb36964e1c33929670cd |
#!/usr/bin/env python
#===============================================================================
# Copyright 2017 Geoscience Australia
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the... | alex-ip/geophys_utils | geophys_utils/netcdf_converter/csv2netcdf_converter.py | Python | apache-2.0 | 4,919 | [
"NetCDF"
] | 0bb6e7793f8428a23625f41bb5c003b807b2d941a2bdf6b54feeafc1db27e2a7 |
import click
import logging
from multiprocessing_logging import install_mp_handler
import simtk.unit as unit
# import all of the sim makers we have available
from wepy_tools.sim_makers.openmm import *
SYSTEM_SIM_MAKERS = {
'LennardJonesPair' : LennardJonesPairOpenMMSimMaker,
'LysozymeImplicit' : LysozymeImpl... | ADicksonLab/wepy | src/wepy_test_drive.py | Python | mit | 3,930 | [
"OpenMM"
] | f6f8dc4cc59dff1aae4aa8e60b44812892cd145ce5565b92c9b9bf04a60f9375 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This packages contains affiliated package tests.
"""
import os
import shutil
import time
import tempfile
import warnings
# import urllib
from astropy import log
from astropy.utils.data import download_file
from contextlib import contextmanager
@cont... | matteobachetti/srt-single-dish-tools | srttools/tests/__init__.py | Python | bsd-3-clause | 6,544 | [
"Gaussian"
] | 6ab6633fd0c7b546a486e6c1527cd6e4323480010af0df0b70eb61d309ccebf4 |
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