text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
# -*- coding: utf-8 -*-
# Docker, starting from 0.7.x, generates names from notable scientists and hackers.
# Please, for any amazing man that you add to the list, consider adding an equally amazing woman to it, and vice versa.
RIGHT = [
# Muhammad ibn Jābir al-Ḥarrānī al-Battānī was a founding father of astronomy.... | kdoichinov/pynamesgen | constants.py | Python | gpl-3.0 | 29,819 | [
"Brian"
] | a3eca2bb0b140f15e97c26e211aa8ed2a4ad2cbb2ee71bbd95f70616b36b4067 |
import os
import time
import tarfile
import xml.sax
import numpy as np
from gpaw.mpi import broadcast as mpi_broadcast
from gpaw.mpi import world
from gpaw.io import FileReference
intsize = 4
floatsize = np.array([1], float).itemsize
complexsize = np.array([1], complex).itemsize
itemsizes = {'int': intsize, 'float... | robwarm/gpaw-symm | gpaw/io/tar.py | Python | gpl-3.0 | 8,285 | [
"GPAW"
] | c833d53ba45eedb5867db6ce554ac22186583b4838f52bc43c083592deb88b80 |
#
# This program is free software you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation either version 3 of the License, or
# (at your option) any later version.
#
# Written (C) 2012-2013 Heiko Strathmann
#
from numpy import *
from py... | curiousguy13/shogun | examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py | Python | gpl-3.0 | 6,345 | [
"Gaussian"
] | e889eae7fce9e6fe0c398a2e3aa56ec882ff571584b1fa41edd24d632b4e242a |
"""Python bindings for 0MQ."""
#
# Copyright (c) 2010 Brian E. Granger
#
# This file is part of pyzmq.
#
# pyzmq is free software; you can redistribute it and/or modify it under
# the terms of the Lesser GNU General Public License as published by
# the Free Software Foundation; either version 3 of the L... | takluyver/pyzmq | zmq/__init__.py | Python | lgpl-3.0 | 1,389 | [
"Brian"
] | d1e9734f3a281fef58d30fd16ae73f20eda9ca4e723821a0293cf67ea72abddd |
#! test QC_JSON Schema noncontiguous mol
import numpy as np
import psi4
import json
# Generate JSON data
json_data = {
"schema_name": "qc_schema_input",
"schema_version": 1,
"molecule": {
"geometry": [
0.0, 0.0, -0.1294769411935893,
0.0, -1.494187339479985, 1.02744650792456... | CDSherrill/psi4 | tests/json/schema-1-throws/input.py | Python | lgpl-3.0 | 1,737 | [
"Psi4"
] | 3e1fb9ce4f17191992d9c1cac99cec9fda57ac464b2de31e3e6800c20ab4f6d3 |
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import re
import socket
import sys
import time
import math
from ..compat import (
compat_cookiejar,
compat_cookies,
compat_etree_fromstring,
compat_getpass,
compat_http_client,
... | pim89/youtube-dl | youtube_dl/extractor/common.py | Python | unlicense | 96,165 | [
"VisIt"
] | a5497e905b54d25e126c0473d290f45a51e71ac895598a4bb236767791710d41 |
# Standard Python packages
import math, cmath
import re
import itertools
import numbers
import random
# Special dependencies
import numpy, numpy.random # sudo apt-get install python-numpy
# import minuit # no package
# Augustus dependencies
from augustus.kernel.unitable import UniTable
# Cassius interdependencies
im... | opendatagroup/cassius | tags/cassius_0_1_0_1/cassius/containers.py | Python | apache-2.0 | 145,496 | [
"Gaussian"
] | a2d7b9854171d63b5436deb340ba739763f45cbdaac366df23202692ac153191 |
# revset.py - revision set queries for mercurial
#
# Copyright 2010 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
import re
import parser, util, error, discovery, hbisect, phases
import node
import... | jordigh/mercurial-crew | mercurial/revset.py | Python | gpl-2.0 | 64,224 | [
"VisIt"
] | db2927eac050628eedab4a0fdaf06c60e5623084e54dc4f1d30a9ba3d7b2a951 |
from __future__ import absolute_import
import numpy as np
import tensorflow as tf
from . import likelihood
class Gaussian(likelihood.Likelihood):
def __init__(self, std_dev=1.0):
# Save the raw standard deviation. Note that this value can be negative.
self.raw_std_dev = tf.Variable(std_dev)
... | danmackinlay/AutoGP | autogp/likelihoods/gaussian.py | Python | apache-2.0 | 666 | [
"Gaussian"
] | 7b77b8babb59a3d31a6e9a46b803048427f8ff92e842336b0c5cf8685b05aef1 |
#
# tsne.py
#
# Implementation of t-SNE in Python. The implementation was tested on Python 2.5.1, and it requires a working
# installation of NumPy. The implementation comes with an example on the MNIST dataset. In order to plot the
# results of this example, a working installation of matplotlib is required.
# The ... | masoodking/LinkPrediction | tsne_python/tsne.py | Python | bsd-3-clause | 5,760 | [
"Gaussian"
] | 0b328747446cc00c86f5cf1b83492f0cdd7774932cccce7bc01081545f9b0dfd |
../../../../../../../share/pyshared/orca/scripts/apps/Instantbird/chat.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/Instantbird/chat.py | Python | gpl-3.0 | 73 | [
"ORCA"
] | 4dae61a35462c8e994f3065477f5bf9e4208546d75f7540b783e8aa08228561f |
from warnings import warn
import numpy as np
from scipy.stats import norm as ndist
from ..constraints.affine import constraints
from .debiased_lasso_utils import solve_wide_
def debiasing_matrix(X,
rows,
bound=None,
linesearch=True, # do a linesearch?
... | selective-inference/selective-inference | selectinf/algorithms/debiased_lasso.py | Python | bsd-3-clause | 12,209 | [
"Gaussian"
] | 22ed089069ecd4b5f8266ee2790d1b7b51057f09a6cba07743acf59dfbf6da1c |
#
# Copyright © 2012 - 2021 Michal Čihař <michal@cihar.com>
#
# This file is part of Weblate <https://weblate.org/>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Lice... | phw/weblate | weblate/utils/licensedata.py | Python | gpl-3.0 | 69,321 | [
"NetCDF"
] | 8a1d01449f963bdfd39c6ff51bd031b941e0a07f052059ce1aadccc6fc310c59 |
"""
Unit tests for masquerade.
"""
import json
import pickle
from datetime import datetime
from django.conf import settings
from django.urls import reverse
from django.test import TestCase
from mock import patch
from pytz import UTC
from capa.tests.response_xml_factory import OptionResponseXMLFactory
from courseware.... | Stanford-Online/edx-platform | lms/djangoapps/courseware/tests/test_masquerade.py | Python | agpl-3.0 | 21,539 | [
"VisIt"
] | dfeb73e6c99cf0c5071906186943912c32bacde5c5e1739ba86b6081d63a9bb8 |
#!/usr/bin/env python
#
# Electrum - lightweight Bitcoin client
# Copyright (C) 2011 thomasv@gitorious
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation files
# (the "Software"), to deal in the Software without restriction,
# including witho... | romanz/electrum | lib/old_mnemonic.py | Python | mit | 17,747 | [
"CRYSTAL",
"VisIt"
] | 78bd7cbcb9fbc36ddbb6b410149694742053760d68e985db3e03d33c9512ba4a |
import sys
from ase import Atoms
from gpaw import GPAW, FermiDirac
from gpaw import KohnShamConvergenceError
from gpaw.utilities import devnull, compiled_with_sl
from ase.data.molecules import molecule
# Calculates energy and forces for various parallelizations
tolerance = 4e-5
parallel = dict()
basekwargs = dict... | qsnake/gpaw | gpaw/test/parallel/fd_parallel_kpt.py | Python | gpl-3.0 | 4,179 | [
"ASE",
"GPAW"
] | 6237cf5f062eddd78ceaad94a29adb256e751ec0bcb0aa46b07949736230a1a8 |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2016 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | crisely09/horton | horton/periodic.py | Python | gpl-3.0 | 9,840 | [
"Dalton"
] | c8ecb5397328963748cf3f20873bd144ee819e736817cdff9d9c688c8afc8570 |
__author__ = 'Christoph Heindl'
__copyright__ = 'Copyright 2017, Profactor GmbH'
__license__ = 'BSD'
import glob
import os
import numpy as np
import re
import matplotlib.pyplot as plt
import matplotlib
from mpl_toolkits.axes_grid1 import make_axes_locatable
from sensor_correction.utils import mask_outliers
import s... | cheind/rgbd-correction | sensor_correction/apps/plot_corrected_depth.py | Python | bsd-3-clause | 3,751 | [
"Gaussian"
] | 4ae989ed1a85fb0f05d65121b45a4e01837683c6752b337841b4eebbc1f5282a |
import os, subprocess
import tkMessageBox
def popupInfo(title, message):
tkMessageBox.showinfo(title=title, message=message)
def popupError(title, message):
tkMessageBox.showerror(title=title, icon=tkMessageBox.WARNING, message=message)
def startFiles(*filepaths):
"""Takes a sequence of filepath strings."... | dave-the-scientist/molecbio | rosettaApps/util.py | Python | gpl-3.0 | 13,477 | [
"PyMOL"
] | 26ef0de0a8b8bdbb2bd46a2267b27974ad4f19df6a38050da7807b07e5fc6997 |
"""@See preprocessed data
"""
from numpy import arange, sin, pi
from matplotlib.backends.backend_tkagg import FigureCanvasTkAgg, NavigationToolbar2TkAgg
from matplotlib.backend_bases import key_press_handler
from matplotlib.figure import Figure
from matplotlib.path import Path
import matplotlib.patches as patches
from ... | enriquecoronadozu/HMPy | src/Creator.py | Python | gpl-3.0 | 22,258 | [
"Gaussian"
] | 208e3072225d47837e27ce39c57117bc378e7f22c951584143f7113b85238fe6 |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | lgarren/spack | var/spack/repos/builtin/packages/r-zlibbioc/package.py | Python | lgpl-2.1 | 1,882 | [
"Bioconductor"
] | 61749bcf5836c8bcc25a0add1e56bce3cdcb85426b6cc9009d21a790eb3ae0f3 |
#!/bin/env python
"""
Module simtk.unit.unit_operators
Physical quantities with units, intended to produce similar functionality
to Boost.Units package in C++ (but with a runtime cost).
Uses similar API as Scientific.Physics.PhysicalQuantities
but different internals to satisfy our local requirements.
In particular, t... | swails/mdtraj | mdtraj/utils/unit/unit_operators.py | Python | lgpl-2.1 | 5,698 | [
"OpenMM"
] | eb25f2fdd2f318caa426f8873faed5ca92d0f57c073aee5f9172c59c577023ba |
"""
chatbot.py
Ask Cleverbot something via CloudBot! This one is way shorter!
Created By:
- Foxlet <http://furcode.tk/>
License:
GNU General Public License (Version 3)
"""
import urllib.parse
import hashlib
import collections
import html
import requests
from cloudbot import hook
SESSION = collections.Or... | CrushAndRun/Cloudbot-Fluke | plugins/chatbot.py | Python | gpl-3.0 | 1,912 | [
"Galaxy"
] | 781349a977cc9df453fbe615d1a1b73eca43ebce54241d666c9646528d387e3a |
""" :mod: GFAL2_SRM2Storage
=================
.. module: python
:synopsis: SRM2 module based on the GFAL2_StorageBase class.
"""
# pylint: disable=invalid-name
import errno
import json
import gfal2 # pylint: disable=import-error
# from DIRAC
from DIRAC import gLogger, gConfig, S_OK, S_ERROR
from DIR... | petricm/DIRAC | Resources/Storage/GFAL2_SRM2Storage.py | Python | gpl-3.0 | 8,242 | [
"DIRAC"
] | ad3bd76e64418f3bc5b8acb3880e29fcc2015340546e7829c89c0f4169e646a2 |
# Copyright 2012, SIL International
# All rights reserved.
#
# This library is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation; either version 2.1 of License, or
# (at your option) any lat... | silnrsi/graide | lib/ttfrename/font.py | Python | lgpl-2.1 | 6,108 | [
"VisIt"
] | 6077464983eabfd1150fe1aa26fc02305b376ebbe8496d3559a1d1d58cc34a16 |
#!/usr/bin/env python
from __future__ import print_function
from builtins import str
import argparse
import os
import sys
import math
import hashlib
import pandas as pd
import glob
import sibispy
from sibispy import sibislogger as slog
from sibispy import check_dti_gradients as chk_dti
def get_cases(cases_root, arm... | sibis-platform/sibispy | cmds/exec_check_dti_gradients.py | Python | bsd-3-clause | 6,144 | [
"VisIt"
] | 445fa8a820884fdeecdc008ff525b15d087216b39aba0ae55de7e1545abf76ca |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | sam-m888/gramps | gramps/plugins/webreport/statistics.py | Python | gpl-2.0 | 11,183 | [
"Brian"
] | d8f83fa9a82aed2b2b281ebaf46e013d13ad142606b7754c953a2246014a5628 |
#Dan Blankenberg
#takes commandline tree def and input multiple fasta alignment file and runs the branch length ananlysis
import os, sys
from galaxy import eggs
from galaxy.tools.util import hyphy_util
#Retrieve hyphy path, this will need to be the same across the cluster
tool_data = sys.argv.pop()
HYPHY_PATH ... | volpino/Yeps-EURAC | tools/hyphy/hyphy_branch_lengths_wrapper.py | Python | mit | 1,995 | [
"Galaxy"
] | 043e7ab3ba034db6020994e476bd512ca7119c8a36b258da9372accb65b55505 |
#
# Copyright (C) 2013-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | hmenke/espresso | samples/visualization_ljliquid.py | Python | gpl-3.0 | 6,372 | [
"ESPResSo",
"Mayavi"
] | 07ccd6c06e13ed956ec17b8fc355d6c230731393a085ee358ae7b52d06a9cf3a |
"""
Bok choy acceptance tests for conditionals in the LMS
"""
from capa.tests.response_xml_factory import StringResponseXMLFactory
from common.test.acceptance.tests.helpers import UniqueCourseTest
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.lms.c... | tanmaykm/edx-platform | common/test/acceptance/tests/lms/test_conditional.py | Python | agpl-3.0 | 4,879 | [
"VisIt"
] | 471ec05108261c0540f6bb52ccc42fe734301f39717bdb0f2276c59d0a197ebb |
"""
sewpy: Source Extractor Wrapper for Python
Recent improvements (latest on top):
- new loglevel option to adjust sewpy's overall "verbosity" on instantiation.
- better verbosity about masked output of ASSOC procedure
- ASSOC helper implemented
- run() now returns a dict containing several objects, such as the out... | megalut/sewpy | sewpy/sewpy.py | Python | gpl-3.0 | 74,870 | [
"Gaussian"
] | 7b1319c2da7e6795741e0b5618d43aafac72ff18938face2727fc3dc5dfdb274 |
from scraper import Scraper
class missile(Scraper):
"""Handle usage of interplanetary missiles"""
def launch_missile(self, coordinates, missiles_count=10):
"launch the number of missiles to the coordinates "
url = self.url_provider.get_page_url("missile")
galaxy = coordinates.split(':... | winiciuscota/OG-Bot | ogbot/scraping/missile_attack.py | Python | mit | 683 | [
"Galaxy"
] | 41081cbd2ce8c013db601d890ff9c4bd61ed7ffb1b2eefa7e48fdd187247aa2e |
from sympy import (meijerg, I, S, integrate, Integral, oo, gamma,
hyperexpand, exp, simplify, sqrt, pi, erf, sin, cos,
exp_polar, polar_lift, polygamma, hyper, log, expand_func)
from sympy.integrals.meijerint import (_rewrite_single, _rewrite1,
meijerint_indefinite, _infla... | beni55/sympy | sympy/integrals/tests/test_meijerint.py | Python | bsd-3-clause | 27,319 | [
"Gaussian"
] | 73c5e280e3b7d61731279e6648d965fe97585ea094a5d57800901ee67a91f3fc |
# Copyright 2003-2008 by Leighton Pritchard. All rights reserved.
# Revisions copyright 2008-2012 by Peter Cock.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Contact: Leighton Pritchard,... | zjuchenyuan/BioWeb | Lib/Bio/Graphics/GenomeDiagram/_CircularDrawer.py | Python | mit | 68,642 | [
"Biopython"
] | b25e06af8b19e30aea8a2800c92b6514f26dcb3de1093dbcffb4f4e6924b17a4 |
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import nest # import NEST module
def single_neuron(spike_times, sim_duration):
nest.set_verbosity('M_WARNING') # reduce NEST output
nest.ResetKernel() # reset simulation kernel
# create LIF neuron with exponential synaptic currents... | jhnnsnk/UP-Tasks | NEST/single_neuron_task/single_neuron.py | Python | gpl-2.0 | 1,344 | [
"NEURON"
] | 336719797bd7c2284a9d6b45523db3cf088fce8471102f9e2fc84481a153c0f5 |
from setuptools import setup, find_packages
setup(
name='dfttopif',
version='1.1.0',
description='Library for parsing Density Functional Theory calculations',
url='https://github.com/CitrineInformatics/pif-dft',
install_requires=[
'ase<=3.17.0',
'pypif>=2.0.1,<3',
'dftparse>... | CitrineInformatics/pif-dft | setup.py | Python | apache-2.0 | 552 | [
"ASE"
] | ba9aaae0542047c56c6ad055d8c04d99a4366aa9a79ae3a3102c0911e18fe633 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module provides so-called "strategies" to determine the coordination environments of an atom in a structure.
Some strategies can favour larger or smal... | gpetretto/pymatgen | pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py | Python | mit | 98,578 | [
"pymatgen"
] | 3ab59c79c2febe89e24f42918a673966aec66270424486eed1bb2bc832dfd01d |
# Copyright 2015 Allen Institute for Brain Science
# This file is part of Allen SDK.
#
# Allen SDK is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# Allen SDK is distributed in the ... | wvangeit/AllenSDK | allensdk/api/queries/biophysical_perisomatic_api.py | Python | gpl-3.0 | 12,180 | [
"NEURON"
] | 3b0119cbbe8c9c8c8b9ed2bd895a6e2910b9b96c3f3431adc9d105146d9b3739 |
r"""
===============
Decoding (MVPA)
===============
.. contents:: Contents
:local:
:depth: 3
.. include:: ../../links.inc
Design philosophy
=================
Decoding (a.k.a. MVPA) in MNE largely follows the machine
learning API of the scikit-learn package.
Each estimator implements ``fit``, ``transform``, ``... | mne-tools/mne-tools.github.io | 0.21/_downloads/794cfa7d3963d16b6e76d03bfa14d1e0/plot_sensors_decoding.py | Python | bsd-3-clause | 17,587 | [
"VisIt"
] | c5f704054fcd39f4f46f0977f573e79b46dd64d6a2aa3b7a07b47c6099140ab2 |
from pylab import *
from numpy import *
from scipy.io.netcdf import netcdf_file
from datetime import datetime, time
from funcs import *
from read_NewTable import tshck, tini_icme, tend_icme, tini_mc, tend_mc, n_icmes, MCsig
from ShiftTimes import *
def thetacond(ThetaThres, ThetaSh):
if ThetaThres<0.:
return ones(l... | jimsrc/seatos | sheaths/src/forbush/rebineo_o7o6.py | Python | mit | 4,551 | [
"NetCDF"
] | 658c08409c63bf17c5ee65afc40caa7b122f3dae42c9a57f71bec767a536d08a |
import tensorflow as tf
import re
FLAGS = tf.app.flags.FLAGS
tf.app.flags.DEFINE_boolean('use_fp16', False,
"""Train the model using fp16.""")
TOWER_NAME = 'tower'
NUM_CLASSES = 3
def _variable_on_cpu(name, shape, initializer):
"""Helper to create a Variable stored on CPU memory.
... | bgshin/doc-classify-multi-gpu | src/cnntw/cnn_model.py | Python | apache-2.0 | 7,389 | [
"Gaussian"
] | 977b6a8a1dd21c167b68ad7d6945fa4855abc7a8f0b8dbfa68b2f30abf8c3162 |
import datetime
import logging
from xml.etree import ElementTree as ET
from django.shortcuts import render
from serializable import models_to_xml, xml_to_models, delete_all_models_in_db
from models import Menu, Order, MenuItem, OrderEntry
from test_serializable import indent_xml
def index(request):
i... | marksantesson/xmldump | xmldump/views.py | Python | apache-2.0 | 1,612 | [
"Brian"
] | 9065460ca98915d802f8e28e1dc95466e4458a6947450e47c4b46a24b37432b1 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | t0mk/ansible | lib/ansible/modules/network/lenovo/cnos_image.py | Python | gpl-3.0 | 8,759 | [
"VisIt"
] | 2c7b61298e7c58a8d0c32024e6d609320bae488e6c9f244fff9476391af94145 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Hive Appier Framework
# Copyright (c) 2008-2021 Hive Solutions Lda.
#
# This file is part of Hive Appier Framework.
#
# Hive Appier Framework is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by the Apach... | hivesolutions/appier | src/appier/legacy.py | Python | apache-2.0 | 13,083 | [
"VisIt"
] | 2d8b7ef3739546033b1044271f2bf12ffbb7f83ae324980ed41bcc3f5cbbcb81 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Macsio(CMakePackage):
"""A Multi-purpose, Application-Centric, Scalable I/O Proxy Applicat... | LLNL/spack | var/spack/repos/builtin/packages/macsio/package.py | Python | lgpl-2.1 | 4,380 | [
"NetCDF"
] | 126efcdc5b66797cfa54b11f4c7c7b4a8446611e354b2667f05b6b245cd79f60 |
# __BEGIN_LICENSE__
#
# Copyright (C) 2010-2013 Stanford University.
# All rights reserved.
#
# __END_LICENSE__
import numpy as np
import time
from scipy.sparse.linalg.interface import LinearOperator
from lflib.lightfield import LightField
from lflib.imageio import save_image
from lflib.linear_operators import Light... | sophie63/FlyLFM | stanford_lfanalyze_v0.4/lflib/solvers/mrnsd.py | Python | bsd-2-clause | 8,875 | [
"Gaussian"
] | 2419b474d671d4385179536dd1cce2a79adefce8112ec2af5d0b28d55f29f3f6 |
import os
import sys
import itertools
import string
import sympy as sp
import numpy as np
import types
try:
import mpmath
sp.mpmath = mpmath
except:
pass
from sympy.utilities.autowrap import ufuncify
from sympy.utilities import lambdify
if sys.version_info[0]<3:
import cPickle as pickle
from urll... | carichte/pyasf | pyasf/functions.py | Python | gpl-3.0 | 17,291 | [
"CRYSTAL"
] | cc54d64918ea1e6175384040b4732dae7e256314c2f62e893ad53fdcdac1ac84 |
#!/usr/bin/env python
#-----------------------------------------------------------------------------
# Copyright (c) 2013--, biocore development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#-------------------------... | ekopylova/burrito-fillings | bfillings/sortmerna_v2.py | Python | bsd-3-clause | 19,566 | [
"BLAST"
] | 4b030a9a0c8c89f972d701ac2eb45f86180fe3b2b07dbee2bf3139624a75ff93 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | anderspitman/scikit-bio | skbio/io/_fileobject.py | Python | bsd-3-clause | 2,615 | [
"scikit-bio"
] | 4b1d795fdde0118bd78c6bdb4f5faa1c6f29f0200c9e8dca643e415982c97c71 |
import numpy as np
from sklearn import gaussian_process
from sklearn.base import BaseEstimator
MACHINE_EPSILON = np.finfo(np.double).eps
class GPS( BaseEstimator ):
'''
multivariete wrapper for gaussian process model for sklearn
'''
def __init__( self, n_outputs, regr='constant', corr='squared_exponential',
... | marcino239/pilco | GPS.py | Python | gpl-2.0 | 1,033 | [
"Gaussian"
] | 07b9082fc740d87b5b7325dc3386798c3a94e76911d46c7986b44b085baf68b8 |
#!/usr/bin/env python
# Copyright 2018-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/sgx/sgx_jk.py | Python | apache-2.0 | 14,480 | [
"PySCF"
] | 042f4dfa65b32545a2df8de81d301cc370598dab30e25889416186891efb69f4 |
# Copyright 2009 by Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Command line wrapper for the multiple alignment program MUSCLE.
"""
__docformat__ = "epytext... | bryback/quickseq | genescript/Bio/Align/Applications/_Muscle.py | Python | mit | 29,170 | [
"BLAST",
"Biopython"
] | 04fcae316723db577a394e79c296ff3eab17f4c352670e55bb3b9d4a0ea94efb |
'''
Calculate the coverage of each genome pair from the blastx results
Starting with the blastx converted to NC/NC ids, we want to calculate
the coverage at each position in every genome.
We will consider all the genomes with the most number of bases in the
phage as the top genomes
'''
import sys
from phage import... | linsalrob/PhageHosts | code/blastx_coverage.py | Python | mit | 1,491 | [
"BLAST"
] | b85d41a66ebaa9ecd5adf8f3d3bad60ee50f3f2ddb85c423ef39d9f2da4367ce |
"""Functions to plot a vega plot from Extremefill data
"""
# pylint: disable=no-value-for-parameter
import os
import uuid
import numpy as np
from skimage import measure
import xarray
# pylint: disable=redefined-builtin, no-name-in-module
from toolz.curried import pipe, juxt, valmap, concat, map, do
from scipy.interpo... | wd15/extremefill2D | extremefill2D/fextreme/plot.py | Python | mit | 6,906 | [
"NetCDF"
] | 313ae23536821dbc70ca375f14e5e5e085b5c4aef9cba943badab6c8735cc3f7 |
"""
test_Projection.py
This file is part of ANNarchy.
Copyright (C) 2013-2016 Joseph Gussev <joseph.gussev@s2012.tu-chemnitz.de>,
Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Publ... | vitay/ANNarchy | tests/Unittests/test_Projection.py | Python | gpl-2.0 | 13,791 | [
"NEURON"
] | 1d5bb7435c3367b8e1414c5c9e6b08edc55a48566217f4c7ad40c1a386aedba0 |
# Copyright (c) 2000-2013 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | devs1991/test_edx_docmode | venv/lib/python2.7/site-packages/pylint/test/unittest_pyreverse_writer.py | Python | agpl-3.0 | 4,831 | [
"VisIt"
] | bef41d5caa2306047a945484e46a5eb3cadd1d44d024589082ced2613d321613 |
# Copyright (c) 2012, Cloudscaling
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | stackforge/compute-hyperv | compute_hyperv/hacking/checks.py | Python | apache-2.0 | 20,313 | [
"VisIt"
] | 8820b620909add14abaa1391b458de69ec2110f2abab0acf0f9007ea0cb525bf |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | sam-m888/gramps | gramps/plugins/tool/rebuildrefmap.py | Python | gpl-2.0 | 3,591 | [
"Brian"
] | f3af1a9fa6148a660ee942ce4eee3e97693f7b85bea756f252ab07a342565e8e |
# ======================================================================
#
# Cosmograil: cosmograil.tools.sextractor
#
# sextractor module.
#
# Author: Laurent Le Guillou <laurentl@ster.kuleuven.ac.be>
#
# $Id: sextractor.py,v 1.2 2005/07/06 21:40:43 hack Exp $
#
# ======================================================... | wschoenell/chimera | src/chimera/util/sextractor.py | Python | gpl-2.0 | 18,469 | [
"Galaxy"
] | 99e2480cf2b2550c4356a4610512002fcfd542c42e275bdd21600e3fce049acf |
#!/usr/bin/env ipython
from pylab import *
import numpy as np
from scipy.io.netcdf import netcdf_file
import console_colors as ccl
import os
MCwant = '2'
nbefore = 2
nafter = 4
WangFlag = '90.0' #'NaN'
fgap = 0.2
#v_lo = 550.0 #550.0 #450.0 #100.0
#v_hi = 3000.0 #3000.0 #550.0 #... | jimsrc/seatos | sheaths/src/surf.dens_for.paper/src/h_group_Vmc.py | Python | mit | 3,903 | [
"NetCDF"
] | 4fb98c1b93a96b7acb1427c04c05191bbd1997a4acdbde1f153190bf3f7a8347 |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | ansible/ansible | lib/ansible/playbook/conditional.py | Python | gpl-3.0 | 9,983 | [
"VisIt"
] | 20c9d059974c716365a56b339a70b0b289fee73a6ede43cc85277c4e291ffb35 |
from setuptools import find_packages, setup
with open('analyticord/__init__.py', 'r') as f:
for line in f:
if line.startswith('__version__'):
version = line.strip().split('=')[1].strip(' \'"')
break
else:
version = '0.0.1'
with open('README.md', 'rb') as f:
readme =... | Analyticord/module-python | setup.py | Python | mit | 1,330 | [
"MOE"
] | b1046e90224ea9a98bd3d9959432fe27375191b4ff3af1e36a4e2121e857d6af |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
from monty.serialization import dumpfn, loadfn
from pymatgen.core.structure import Molecule
from pymatgen.io.qchem.outputs import QCOutput, check_for_structure_changes
from pymatgen.util.testing im... | materialsproject/pymatgen | pymatgen/io/qchem/tests/test_outputs.py | Python | mit | 12,614 | [
"pymatgen"
] | 9efd620b5d8703b7d792b73b140af35fc74758e0199c6c348686007374481944 |
#!/usr/bin/env python
# Copyright 2012, 2013 The GalSim developers:
# https://github.com/GalSim-developers
#
# This file is part of GalSim: The modular galaxy image simulation toolkit.
#
# GalSim is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published... | mardom/GalSim | doc/doxypy.py | Python | gpl-3.0 | 14,788 | [
"Galaxy"
] | a3beeea788b9b27c488dbb6174d72b6cc9c15b54a34a4f34c71d718056472fdd |
#!/usr/bin/env python
# Author:
# Contact: grubert@users.sf.net
# Copyright: This module has been placed in the public domain.
"""
man.py
======
This module provides a simple command line interface that uses the
man page writer to output from ReStructuredText source.
"""
import locale
try:
locale.setlocale(loc... | intuivo/nautilus-skype | rst2man.py | Python | gpl-3.0 | 34,803 | [
"VisIt"
] | e746db7c594ad2e305a59f14ea45d82fb58acbb8e259ae6a8cb41b5666bc7c6b |
# this program corresponds to special.py
### Means test is not done yet
# E Means test is giving error (E)
# F Means test is failing (F)
# EF Means test is giving error and Failing
#! Means test is segfaulting
# 8 Means test runs forever
### test_besselpoly
### test_mathieu_a
### test_mathieu_even_coef
##... | WarrenWeckesser/scipy | scipy/special/tests/test_basic.py | Python | bsd-3-clause | 132,780 | [
"Elk"
] | c6169fa82fe4bb1bfb89c0ce91747631e8a3a2752bb5a98fb2f671ee51ece360 |
"""Unittest for the input/output facilities class."""
# build-in modules
import unittest
import tempfile
import os
# third-party modules
import scipy
# path changes
# own modules
from medpy.io import load, save
from medpy.core.logger import Logger
# information
__author__ = "Oskar Maier"
__version__ = "r0.2.2, 20... | loli/medpy | tests/io_/loadsave.py | Python | gpl-3.0 | 11,899 | [
"VTK"
] | 2fee0024b34183b0b038aaff4d41fb17153ae47997ac1f48da34acadcadc2679 |
#!/usr/bin/python
"""
# Created on Aug 12, 2016
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com) GitHub ID: grastogi23
#
# module_check: supported
#
# Copyright: (c) 2016 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
"""
... | drmrd/ansible | lib/ansible/modules/network/avi/avi_gslbservice_patch_member.py | Python | gpl-3.0 | 10,405 | [
"VisIt"
] | 1a685c0e1a8148931a45fd315192129743f69c892808d759d421b7fa058c86c0 |
'''
Copyright 2017, Fujitsu Network Communications, Inc.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in w... | warriorframework/warriorframework | warrior/Actions/SeleniumActions/browser_actions.py | Python | apache-2.0 | 119,270 | [
"VisIt"
] | 99124bc89afb4b2c8fd544d11a9f17b679b613d6f94d7ba4e15082d35e9a1ad0 |
# stack.py
#
# Created by Brett H. Andrews on 13 Jun 2017.
import os
from os.path import join
import pickle
import re
import click
import numpy as np
import pandas as pd
import sklearn
import matplotlib.pyplot as plt
import seaborn as sns
from stacking.spectral_processing import make_grid
@click.command()
@click.... | bretthandrews/stacking | stacking/stack.py | Python | bsd-3-clause | 4,103 | [
"Galaxy"
] | 41f97df38c24d660b4aadc0b4ee08fb7ded2c8ae6f70151212af5307d935b9fc |
from sys import exit
from pyneb import RecAtom
from scipy.interpolate import interp1d
from uncertainties import ufloat, UFloat
from uncertainties.unumpy import uarray, exp as unum_exp, log10 as unum_log10, pow as unum_pow
from u... | Delosari/dazer | bin/lib/Astro_Libraries/Reddening_Corrections.py | Python | mit | 18,132 | [
"Gaussian"
] | 0d3a4a6c92ea4c8dc4695f5e14ee61ac7fa6e85404785c8f3fc5deda4c614311 |
"""
Acceptance tests for the teams feature.
"""
import json
import random
import time
from dateutil.parser import parse
import ddt
from nose.plugins.attrib import attr
from selenium.common.exceptions import TimeoutException
from uuid import uuid4
from ..helpers import get_modal_alert, EventsTestMixin, UniqueCourseTes... | jamiefolsom/edx-platform | common/test/acceptance/tests/lms/test_teams.py | Python | agpl-3.0 | 81,480 | [
"VisIt"
] | 60634d38018c47eb646a6bf65c170bebdd86f2d1b473061fe548ece5bd223fd7 |
# coding: utf-8
# Copyright (c) Henniggroup.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals, \
absolute_import
"""
Utility functions
"""
from six.moves import range, zip
import itertools as it
from functools import reduce
import linecache
imp... | henniggroup/MPInterfaces | mpinterfaces/utils.py | Python | mit | 41,763 | [
"ASE",
"CRYSTAL",
"VASP",
"pymatgen"
] | 1b9768282067fa88571ace94b80d7a8bcb2342942b4cb531feed501b5fbd2f0b |
#### PATTERN | EN | INFLECT ##############################################
# -*- coding: utf-8 -*-
# Copyright (c) 2010 University of Antwerp, Belgium
# Author: Tom De Smedt <tom@organisms.be>
# License: BSD (see LICENSE.txt for details).
##########################################################################
# Reg... | textioHQ/pattern | pattern_text/en/inflect_flymake.py | Python | bsd-3-clause | 32,321 | [
"Elk",
"Octopus"
] | e00a18efebe3065da2de821446d7417e2092d6e619bab252d1266e4fd93ae01e |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class SagaGis(AutotoolsPackage, SourceforgePackage):
"""
SAGA is a GIS for Automated Geoscien... | LLNL/spack | var/spack/repos/builtin/packages/saga-gis/package.py | Python | lgpl-2.1 | 4,704 | [
"NetCDF"
] | ce8fa3700b468eb6690bdd058e02bd0a54b245e18d08cf2eaa3820b1d0019e68 |
# Copyright (C) 2013, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
import os, shutil, hashlib, collections, re
from os.path import join, basename, dirname, abspath
from zeroinstall.injector import model
from zeroinstall import SafeException, su... | bastianeicher/0repo | repo/archives.py | Python | lgpl-2.1 | 7,045 | [
"VisIt"
] | b8c49451878d397219f52a0a66b800741ae67591e5d6d46f2eb4ce2be79a1e3c |
#
# Brian C. Lane <bcl@redhat.com>
#
# Copyright 2014 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use, modify,
# copy, or redistribute it subject to the terms and conditions of the GNU
# General Public License v.2. This program is distributed in the hope that it
# will be useful,... | cgwalters/pykickstart | pykickstart/commands/sshkey.py | Python | gpl-2.0 | 3,231 | [
"Brian"
] | 43bdf07169822ee558e99bb58596c02f2c89987f9425f01301b1e38f1bf71c7f |
#!/usr/bin/env python
from pyDFTutils.perovskite.lattice_factory import PerovskiteCubic
from pyDFTutils.ase_utils import my_write_vasp,normalize, vesta_view, set_element_mag
from ase.io.vasp import read_vasp
try:
from ase.atoms import string2symbols
except:
from ase.symbols import string2symbols
import numpy as... | mailhexu/pyDFTutils | pyDFTutils/perovskite/cubic_perovskite.py | Python | lgpl-3.0 | 2,732 | [
"ASE",
"VASP"
] | 07cc10a7ba2e90065ed646457988d4268d258bbd842d55bc03823eff1f9dcb8a |
# -*- coding: utf-8 -*-
# Generated by Django 1.11.4 on 2018-06-06 20:34
from __future__ import unicode_literals
import datetime
from django.conf import settings
from django.db import migrations, models
import django.db.models.deletion
class Migration(migrations.Migration):
dependencies = [
migrations.s... | scaphilo/koalixcrm | koalixcrm/crm/migrations/0027_auto_20180606_2034.py | Python | bsd-3-clause | 5,968 | [
"VisIt"
] | 45d9557f5d4b82b9f1121ffbd195a416abf8d50b4641e1f794664d2150a8a8b3 |
from django.db import models
# from edc_base.audit_trail import AuditTrail
from edc_constants.choices import YES_NO
from edc_base.model.fields.custom_fields import OtherCharField
from .maternal_crf_model import MaternalCrfModel
from td_maternal.maternal_choices import SIZE_CHECK
class MaternalInterimIdcc(MaternalC... | botswana-harvard/tshilo-dikotla | td_maternal/models/maternal_interim_idcc_data.py | Python | gpl-2.0 | 1,989 | [
"VisIt"
] | 4502760b69559247c9aed4ff0dcbaf3358bedcb6b513512f939e452066e7d157 |
##
# Copyright 2012-2021 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | hpcugent/easybuild-framework | test/framework/github.py | Python | gpl-2.0 | 51,543 | [
"LAMMPS",
"SIESTA",
"WIEN2k"
] | 1a8fddfe186c139b78bbacfa5bd1db08f34e785aaa2b91988a3efa663b3db266 |
# Copyright 2020 Google Research. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | google/automl | efficientdet/hparams_config.py | Python | apache-2.0 | 15,113 | [
"Gaussian"
] | 03c18c31b685bfe04f536fcb0ef0f21e4e0d592e2ad672dfe975fa0d9cf1daa5 |
# -*- coding: utf-8 -*-
"""Flask App for MPContribs API"""
import os
import boto3
import urllib
import logging
import requests
#import rq_dashboard
#import flask_monitoringdashboard as dashboard
import flask_mongorest.operators as ops
from importlib import import_module
from websocket import create_connection
from fla... | materialsproject/MPContribs | mpcontribs-api/mpcontribs/api/__init__.py | Python | mit | 8,122 | [
"VisIt"
] | 762a035dc3e56faf62916307a1b3c6504efaf72b107e0a2b403b6d5c2a9ede79 |
# Latent distance model for neural data
import numpy as np
import numpy.random as npr
from autograd import grad
from scipy.optimize import minimize
import autograd.numpy as atnp
from hips.inference.hmc import hmc
from pyglm.utils.utils import expand_scalar, compute_optimal_rotation
from matplotlib import pyplot as plt
... | sheqi/TVpgGLM | test/practice5_Latent_Distance_Model_Weight_Qi_optimize.py | Python | mit | 3,911 | [
"Gaussian"
] | ece8f8de583bdbe4dd5beee642d51a3a835daef83e069e6a413b27862f4d2028 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | rmcgibbo/psi4public | psi4/share/psi4/databases/CORE.py | Python | lgpl-3.0 | 23,802 | [
"Psi4"
] | fcae6c66a1a8891c222aa79c1fa67350aa14a3738fe1f5fb06def77c97836b5d |
""" Utilities for WMS
"""
import io
import os
import sys
import json
from DIRAC import gConfig, gLogger, S_OK
from DIRAC.Core.Utilities.File import mkDir
def createJobWrapper(jobID, jobParams, resourceParams, optimizerParams,
extraOptions='',
defaultWrapperLocation='DIRAC/W... | andresailer/DIRAC | WorkloadManagementSystem/Utilities/Utils.py | Python | gpl-3.0 | 4,855 | [
"DIRAC"
] | dfa69085fbf0168b3b3b03ba6ea0cfbe3d9abc8a1172fb26b7d7ac79274c38b4 |
# Copyright 2015 Planet Labs, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not
# use this file except in compliance with the License. You may obtain a copy of
# the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | planetlabs/datalake | api/setup.py | Python | apache-2.0 | 2,111 | [
"Brian"
] | 746a41c193d1a89d8b1b26d26efda471e019ceea2772c10813b8ea63dff0ef90 |
# ################################################################
#
# Active Particles on Curved Spaces (APCS)
#
# Author: Silke Henkes
#
# ICSMB, Department of Physics
# University of Aberdeen
# Author: Rastko Sknepnek
#
# Division of Physics
# School of Engineering, Physics and Mathem... | sknepneklab/SAMoS | analysis/batch_nematic/batch_analyze_nematic_phi0.75.py | Python | gpl-3.0 | 2,450 | [
"VTK"
] | d1e8a8681ebc53401b98924819eefd6d109efde887801e676bc2ad4243a7248d |
#
# tests/test_tensorflow_imagenet_adapter.py - unit test for the tensorflow ImageNet adapter.
#
# Copyright (c) 2018 SingularityNET
#
# Distributed under the MIT software license, see LICENSE file.
#
import logging
import os
from pathlib import Path
import base64
import pytest
from adapters.tensorflow.imagenet impo... | singnet/singnet | agent/tests/test_tensorflow_imagenet_adapter.py | Python | mit | 4,014 | [
"Bowtie"
] | 75eb4d97259b5f1ce696c2688f5debe3a6776d543fe43342e210e9051c84a916 |
# (c) 2012, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any lat... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/template/safe_eval.py | Python | bsd-3-clause | 4,871 | [
"VisIt"
] | e49853d6e030182c04df2e71ed5c72477f3ee23890f35f4a26b884716ad12803 |
"""Tests for the thumbs module"""
from workbench import scenarios
from workbench.test.selenium_test import SeleniumTest
class ThreeThumbsTest(SeleniumTest):
"""Test the functionalities of the three thumbs test XBlock."""
def setUp(self):
super(ThreeThumbsTest, self).setUp()
scenarios.add_xm... | open-craft/xblock-sdk | workbench/test/test_filethumbs.py | Python | agpl-3.0 | 2,756 | [
"VisIt"
] | cc95de35fe6a970eb8dbd169b6926796eb8a518c12cc832019795275f840c6bb |
# qsub -- utilities for batch submission systems
# Copyright (c) 2010 Oliver Beckstein <orbeckst@gmail.com>
# Made available under GNU Pulic License v3.
"""
:mod:`gromacs.qsub` -- utilities for batch submission systems
=============================================================
The module helps writing submission s... | Becksteinlab/GromacsWrapper | gromacs/qsub.py | Python | gpl-3.0 | 19,233 | [
"Gromacs"
] | 9fd21d88afc6b3c8abe93460ba38aeaea3f919bb9dd7bdfd90a8c66786ee296e |
import sqlite3 as sql
import datetime
import sys
import json
import subprocess
from pickle import dump, load
from urlparse import urlparse
import re
# This script stores the number of opened tabs in Firefox and the URL of the current selected tab if Firefox is focused. The script should be called quite often, as the v... | wasmitnetzen/QuantifiedSelf | Firefox/countFirefox.py | Python | gpl-2.0 | 5,486 | [
"VisIt"
] | d56411bfe3182afbbedd49ea016f95a7efbdad4146a3a50e59784db372d6c8fd |
"""
This file implements Oja's hebbian learning rule.
Relevant book chapters:
- http://neuronaldynamics.epfl.ch/online/Ch19.S2.html#SS1.p6
"""
# This file is part of the exercise code repository accompanying
# the book: Neuronal Dynamics (see http://neuronaldynamics.epfl.ch)
# located at http://github.com/EPFL-LC... | EPFL-LCN/neuronaldynamics-exercises | neurodynex3/ojas_rule/oja.py | Python | gpl-2.0 | 4,820 | [
"Gaussian",
"NEURON"
] | 10428cbb544a5aa9d283e5321c09ad67cf8e0640b6deae46b85a0b11ec5f3996 |
"""
pymel ipython configuration
Current Features
----------------
tab completion of depend nodes, dag nodes, and attributes
automatic import of pymel
Future Features
---------------
- tab completion of PyNode attributes
- color coding of tab complete options
- to differentiate between methods and attributes
... | shrtcww/pymel | pymel/tools/ipymel.py | Python | bsd-3-clause | 23,674 | [
"VisIt"
] | 10c4d165cc8a8e1dbb6168e04c635cb6e52c1bf081e261af4167cf6a30772ff5 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""Tests for the Windows Scheduled Task job file parser."""
import unittest
from plaso.formatters import winjob as _ # pylint: disable=unused-import
from plaso.lib import eventdata
from plaso.lib import timelib
from plaso.parsers import winjob
from tests.parsers import test... | ostree/plaso | tests/parsers/winjob.py | Python | apache-2.0 | 3,104 | [
"Brian"
] | fe0eb3c2c1b164a6d39d9ab71e1e9a473e4c09d20bc5e8a94eea4e82fe60f83b |
import itertools
import numpy as np
from scipy import sparse
from scipy.stats import norm
from scipy.optimize import minimize, minimize_scalar
from scipy.sparse import csc_matrix, linalg as sla
from functools import partial
from collections import deque
from pygfl.solver import TrailSolver
class GaussianKnown:
'''... | tansey/smoothfdr | smoothfdr/smoothed_fdr.py | Python | mit | 35,721 | [
"Gaussian"
] | 3fe4d04ac909ae548696c35ffc4555caed31173f2bafe880cd73b19bfe582b2f |
import unittest
import os
from datetime import datetime
from tempfile import mkstemp
from invenio.testutils import make_test_suite, run_test_suite
from invenio import bibupload
from invenio import bibtask
from invenio.dbquery import run_sql
from invenio.search_engine_utils import get_fieldvalues
from invenio import oa... | GRArmstrong/invenio-inspire-ops | modules/pdfchecker/lib/arxiv_pdf_checker_regression_tests.py | Python | gpl-2.0 | 10,613 | [
"CRYSTAL"
] | 664cb92997d4ffa651e45dc672f9b1bab51126b1f69f13094d6ab32090926fe6 |
"""
====================================================================
Linear and Quadratic Discriminant Analysis with confidence ellipsoid
====================================================================
Plot the confidence ellipsoids of each class and decision boundary
"""
print(__doc__)
from scipy import lin... | 3manuek/scikit-learn | examples/classification/plot_lda_qda.py | Python | bsd-3-clause | 4,806 | [
"Gaussian"
] | 550abd6cf98d32a8bcae0a85570e1ae4770c891fc94207f4cdc6f5ec7e722cb0 |
# -*- coding: utf-8 -*-
import base64
import datetime
import json
import time
import mock
from nose.tools import eq_, ok_
from nose.plugins.attrib import attr
from pyquery import PyQuery as pq
from urlparse import urlparse
from django.conf import settings
from django.contrib.sites.models import Site
from django.core... | chirilo/kuma | kuma/wiki/tests/test_views.py | Python | mpl-2.0 | 168,228 | [
"VisIt"
] | 2f7e0c6e63db563bad12338708aa47d9d86b3d8efcfcff877d55d1630804a050 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.