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# -*- coding: utf-8 -*-
import numpy as np
import kernel as kernels
import bandwidths as bw
#TODO: should this be a function?
class KDE(object):
"""
Kernel Density Estimator
Parameters
----------
x : array-like
N-dimensional array from which the density is to be estimated
kernel : Ker... | pprett/statsmodels | statsmodels/sandbox/nonparametric/kde2.py | Python | bsd-3-clause | 2,549 | [
"Gaussian"
] | 73b684fb0744f9af968b61621def0f1b1ffe908363e4c7cde94ed115c5644d13 |
"""
DictCache.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import datetime
import threading
# DIRAC
from DIRAC.Core.Utilities.LockRing import LockRing
class ThreadLocalDict(threading.local):
"""This class is just useful t... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/DictCache.py | Python | gpl-3.0 | 8,639 | [
"DIRAC"
] | fdf3a65ef01a4ff4503801fcf7ab1f4fa95f14d9ce9d8ac1d28f14fa6bfbbba5 |
# The MIT License (MIT)
#
# Copyright (c) 2016, The MITRE Corporation. All rights reserved.
#
# Approved for Public Release; Distribution Unlimited 14-1511
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
... | awest1339/multiscanner | libs/office_meta.py | Python | mpl-2.0 | 19,544 | [
"FEFF"
] | 07946360d888c38b89ee17e862448a3febc91067de8a31f303780ff1cc70135a |
import numpy as np
import sys
import os
import time
from ase.units import Bohr
from ase.structure import bulk
from gpaw import GPAW
from gpaw.atom.basis import BasisMaker
from gpaw.response.df import DF
from gpaw.mpi import serial_comm, rank, size
from gpaw.utilities import devnull
if rank != 0:
sys.stdout = devnul... | qsnake/gpaw | gpaw/test/aluminum_EELS_lcao.py | Python | gpl-3.0 | 1,532 | [
"ASE",
"GPAW"
] | 143d684d8e6b9d0c2b32a94ced3bdbabf880d33bda5e0b88726c5094443dd11f |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007 Donald N. Allingham
# Copyright (C) 2008 Brian Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either versio... | sam-m888/addons-source | AttachSourceTool/AttachSourceTool.py | Python | gpl-2.0 | 8,173 | [
"Brian"
] | e0f8f692013df514b850424f0ff5a239e9d0134f25f2901bbfc481df20b519ce |
# -*- coding: utf-8 -*-
"""Release data for the IPython project."""
#-----------------------------------------------------------------------------
# Copyright (c) 2008, IPython Development Team.
# Copyright (c) 2001, Fernando Perez <fernando.perez@colorado.edu>
# Copyright (c) 2001, Janko Hauser <jhauser@zscout.de>... | lifeinoppo/littlefishlet-scode | RES/REF/python_sourcecode/ipython-master/IPython/core/release.py | Python | gpl-2.0 | 4,541 | [
"Brian"
] | 669647d079e44610c3197ea9b6966bd3e44a1ce395dcdd3d95b3ac434a1d5755 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# user - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the ... | heromod/migrid | mig/simulation/user.py | Python | gpl-2.0 | 2,151 | [
"Brian"
] | ffc24f61194ba2be767061999acc146ef1ec5d2e37c2a234cdafa8af94db306b |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/integrator/DPDThermostat.py | Python | gpl-3.0 | 1,933 | [
"ESPResSo"
] | 6c1038ca33c767c651c312155feb855a8ab40a53bd292efaad7cf2c4158cca5e |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkSuperquadricSource(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | nagyistoce/devide | modules/vtk_basic/vtkSuperquadricSource.py | Python | bsd-3-clause | 483 | [
"VTK"
] | 8b9980f703d1c687cb0c92ce4ebf4b6beb1a5aaa5af18f80f79f9fe222a4636c |
"""
"""
from abc import ABCMeta, abstractmethod
PULSAR_UNKNOWN_RETURN_CODE = '__unknown__'
class ManagerInterface:
"""
Defines the interface to various job managers.
"""
__metaclass__ = ABCMeta
@abstractmethod
def setup_job(self, input_job_id, tool_id, tool_version):
"""
Setu... | galaxyproject/pulsar | pulsar/managers/__init__.py | Python | apache-2.0 | 3,684 | [
"Galaxy"
] | 14783136daad42d869d0874d9b80ff17cdce8dcb1e3c4aa6bfa812f5ca89fd2b |
# -*- coding: utf-8 -*-
# messages.py
# Copyright (C) 2013 LEAP
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Th... | laborautonomo/leap_mail | src/leap/mail/imap/messages.py | Python | gpl-3.0 | 45,339 | [
"MOE"
] | a6870f63c8a3e1732264b3df35963350eeaee83198659a5a3210f4d849a577b2 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/storage/__init__.py | Python | gpl-3.0 | 1,161 | [
"ESPResSo"
] | b85769fdbd1c14ea2b6e1b088b84b26ee61046081272e680e846c4605612f0ab |
# -*- coding: utf-8 -*-
""" Kullback-Leibler divergence functions and klUCB utilities.
- Faster implementation can be found in a C file, in ``Policies/C``, and should be compiled to speedup computations.
- Cf. http://banditslilian.gforge.inria.fr/docs/Policies.kullback.html for a documentation.
- Cf. https://en.wikipe... | Naereen/notebooks | kullback.py | Python | mit | 18,923 | [
"Gaussian"
] | 8395e5257e3a35076f256575657aec1df3732ee95970825c561afd6284f876ff |
../../../../../../../../share/pyshared/orca/scripts/apps/yelp/yelp_v2/script_utilities.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/yelp/yelp_v2/script_utilities.py | Python | gpl-3.0 | 89 | [
"ORCA"
] | e38da35131b034912eff2870dbc1c8ef6c4787c7ab354cddfede56b5f6cbcff9 |
''' Synchronizer
Module that keeps the database synchronized with the CS
Module that updates the RSS database ( ResourceStatusDB ) with the information
in the Resources section. If there are additions in the CS, those are incorporated
to the DB. If there are deletions, entries in RSS tables for those elements ... | arrabito/DIRAC | ResourceStatusSystem/Utilities/Synchronizer.py | Python | gpl-3.0 | 22,548 | [
"DIRAC"
] | d569acba742a0f751d6524d7c922ddc3cabccb76d1349ef477f5951d5f2d2347 |
import matplotlib.pyplot as plt
import numpy as np
class TweetVisualize(object):
def visualize_kde(self, est, min_time, max_time, scale_factor = 1.0):
#kde = KernelDensity(kernel='gaussian', bandwidth = bandwidth)
n_bins = (max_time - min_time) * 10
x = np.linspace(min_time, m... | vrkrishn/FBHacks | src/reference/TweetVisualize.py | Python | mit | 1,843 | [
"Gaussian"
] | 2303b2769b13b2d6d07a9a21bf2b942c62c37910c4b93bbc1b90a65c11541a76 |
# Copyright 2017 Canonical Ltd.
# Licensed under the LGPLv3, see LICENCE file for details.
import json
import logging
import os
import tempfile
from datetime import datetime, timedelta
from unittest import TestCase
import macaroonbakery.bakery as bakery
import macaroonbakery.checkers as checkers
import macaroonbakery.... | go-macaroon-bakery/py-macaroon-bakery | macaroonbakery/tests/test_agent.py | Python | lgpl-3.0 | 15,700 | [
"VisIt"
] | e6c4c80bda3c07900bffe04f0a2f7f4707c1bc06a54e99251f13a256241148e1 |
"""Kernels"""
# Code
# Copyright (c) 2013-2016, Massachusetts Institute of Technology
# Copyright (c) 2016-2022, Alex Gorodetsky
#
# This file is part of GPEXP:
# Author: Alex Gorodetsky alex@alexgorodetsky
#
# GPEXP is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Publi... | goroda/GPEXP | gpExp/kernels.py | Python | gpl-2.0 | 11,780 | [
"Gaussian"
] | 6cefbf80177b0030901f0c3cc04f03b5a65e344904732a0da3cb9bda8af47692 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2022 Stanford University and the Authors
#
# Authors: Peter Eastman
# Contributors:
#
# MDTraj is free software: you can ... | mdtraj/mdtraj | tests/test_pdbx.py | Python | lgpl-2.1 | 2,869 | [
"MDTraj",
"OpenMM"
] | 21eda4794db6efdaeaeb652bbbadb0a916dce9d8159c5e432a62bcbeaac081b6 |
from mpi4py import MPI
import pyCore
import sys, getopt
def main(argv):
model = ''
mesh = ''
try:
opts, args = getopt.getopt(argv,"hg:m:",["model=","mesh="])
except getopt.GetoptError:
print('test_pytCore.py -g <model> -m <mesh>')
sys.exit(2)
for opt, arg in opts:
if opt == '-h... | SCOREC/core | python_wrappers/test_pyCore.py | Python | bsd-3-clause | 1,149 | [
"VTK"
] | 9f8b396e5cdf7f5d87a168efedfd4f0b8001a1b83100d611098e617993805169 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.AndreaConsadori.Colubris/setup.py | Python | gpl-2.0 | 3,300 | [
"VisIt"
] | 2a6cf42e4ab7cbdbd7bfaadc9785513a0c0524286b8358c9d2957f6da73fe587 |
#Author: Kevin Boehme
#Date: 12-20-2014
#This program is part of a TnSeq analysis pipeline, designed to take raw fastq or fasta reads, and produce tabulated data on hop count occurrence.
import sys
sys.dont_write_bytecode = True
import ConfigParser
import logging
import gzip
import os
import glob
import subprocess
i... | KBoehme/TnSeq-Pipeline | TnSeq-Pipeline.py | Python | mit | 28,211 | [
"Bowtie"
] | 4ffc3269e423218414aba5eed36b7f5c6f489e51d384ab55dde8368913f873fc |
# coding: utf-8
import numpy as np
from math import ceil
from .. import img_as_float
from ..restoration._denoise_cy import _denoise_bilateral, _denoise_tv_bregman
from .._shared.utils import _mode_deprecations, skimage_deprecation, warn
import warnings
def denoise_bilateral(image, win_size=None, sigma_color=None, sig... | pratapvardhan/scikit-image | skimage/restoration/_denoise.py | Python | bsd-3-clause | 12,531 | [
"Gaussian"
] | ed1b7dc1012013744198df3c16b62d2b1cacb8aa8b5b72bc4f45f870330edeb5 |
import argparse
import datetime
import shelve
import sys
from pheme.util.config import Config
class TermCache(object):
"""Persistent cache of terms and their anonymized values
Interface to lookup a value (presumably anonymized) from
any existing term, so set a term's anonymized value, and persist
th... | pbugni/pheme.anonymize | pheme/anonymize/termcache.py | Python | bsd-3-clause | 3,154 | [
"VisIt"
] | bc96d7bc4a6b60d48054de299045162050671e5eaf11498418b04c665d86ca2c |
from django.conf.urls import url
from . import views
urlpatterns = [
url(r'^$', views.patient_index, name='index'),
url(r'^(\d+)/$', views.patient_show),
url(r'^get$', views.patient_get),
url(r'^create$', views.patient_create),
url(r'^(\d+)/appointment/create$', views.appointment_create),
url(... | aliakbars/tbdc | patient/urls.py | Python | apache-2.0 | 1,008 | [
"VisIt"
] | 90b8173911858f3366b1affca14a859fab463d7df978af02eca65e2d60311dcf |
#!/usr/bin/env python
# Notes:
# - The above pragma line is only required if you plan to run this module as a stand-alone script to run any test harnesses which may occur after "if __name__ == '__main__'".
#
# - You should run lime with this script in the form
# pylime model.py
# You will need the location of pylime... | allegroLeiden/lime | example/model.py | Python | gpl-3.0 | 12,700 | [
"Gaussian",
"VTK"
] | c652c7ce1f3f4770a623a9bd8eaa4c7d1be7b6ccf6040fe8d6204ed0a9d38244 |
'''
Module for utility functions useful in a variety
of GIS programs
@author: Jacob Oberman
'''
import time
import calendar
from itertools import izip
import numpy
import netCDF4
import filetypes
def wrap_lon_0_360(lon):
'''Wrap a single longitude to the interval [0, 360)'''
while lon < 0:
lon += 3... | barronh/WHIPS | process_sat/utils.py | Python | mit | 9,559 | [
"NetCDF"
] | fde2db798e7e40c83fe16bcc86554780cc30411bfcdb20d433596956775b3127 |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2020 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permission to us... | bgoli/pysces | pysces/kraken/KrakenNET.py | Python | bsd-3-clause | 14,998 | [
"PySCeS"
] | 158694a40eb03d8b8c6352f7d8e2bd78a7db470c3dd40d5fd7ebb2c68b64b172 |
from GaussianArm import GaussianArm
from BernoulliArm import BernoulliArm
from BaseBanditArm import BaseBanditArm
"""
Arm for modelling a customer's purchasing behaviour.
The model consists on a binomial distribution to find whether or not a given
client makes a purchase and a gaussian distribution from which the rew... | MarcoAlmada/bandit-panda | bandit/arms/RPVArm.py | Python | mit | 879 | [
"Gaussian"
] | 07f4b8815e35854af6e2f209cc4366641bd4d4aa6348c356c2920af1cce397a8 |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2017 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | QuantumElephant/horton | horton/gbasis/test/test_gobasis.py | Python | gpl-3.0 | 26,297 | [
"Gaussian"
] | 7d20db00664e5918f46ff9211dfb9e517eef0c1b682569d4e2fd8d27bf0812a7 |
from tinypy.parser.TinyPyParser import TinyPyParser
from tinypy.parser.TinyPyVisitor import TinyPyVisitor
from tinypy import AST
from tinypy import runtime
class StmtVisitorMixin(TinyPyVisitor):
#
# Base statements
#
def visitSimple_stmt(self, ctx:TinyPyParser.Simple_stmtContext):
statements ... | maxmalysh/tiny-py-interpreter | tinypy/AST/builder/StmtVisitor.py | Python | mit | 4,619 | [
"VisIt"
] | adff231785622d2f070ea94ef35e1017a0939fe5691caedf3f8f37a80099a68a |
"""Defines schema for electromagnetic-related nodes."""
import enum
from schematics import types
from spins.invdes.problem_graph import optplan
from spins.invdes.problem_graph import schema_utils
BOUNDARY_CONDITION_TYPES = []
MESH_TYPES = []
class Material(schema_utils.Model):
"""Defines a material.
A mat... | stanfordnqp/spins-b | spins/invdes/problem_graph/optplan/schema_em.py | Python | gpl-3.0 | 17,659 | [
"CRYSTAL",
"Gaussian"
] | 8781ffd65b2f52097d777f4e3db5e2e427de5b194296017fc2896f02851dbb4d |
"""
Tests for discussion pages
"""
import datetime
from uuid import uuid4
from nose.plugins.attrib import attr
from pytz import UTC
from .helpers import BaseDiscussionTestCase
from ..helpers import UniqueCourseTest
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.courseware import CoursewarePage
fro... | 10clouds/edx-platform | common/test/acceptance/tests/discussion/test_discussion.py | Python | agpl-3.0 | 52,662 | [
"VisIt"
] | e473f4f94ea9bc2f237f4fca04aef21525e8d5b638dad1212b556026e914da27 |
# -*- coding: utf-8 -*-
"""cdk - course development toolkit. Convert asciidoc input to deck.js slidedecks with many
code/development oriented features.
Usage:
cdk [-vbo] [--toc] [--notransition] [--logo=<logo>] [--theme=<theme>] [--custom-css=<cssfile>] FILE
cdk --install-theme=<theme>
cdk --default-theme=<theme... | twitter/cdk | cdk/__init__.py | Python | apache-2.0 | 8,826 | [
"CDK"
] | d666340f529a3d1fdf82e0192af44aa72a63ccbd803672e158332c7d8213655b |
#!/usr/bin/env python
'''
GOAL:
merge various catalogs to make one catalog for all spirals in LCS
- this will enable a much quicker analysis of results than using LCSanalyzeNSA.py
USAGE:
from w/in ipython
%run ~/Dropbox/pythonCode/LCSmergespiralcats.py -r
mergedata()
s=spirals() # this will append... | rfinn/LCS | paper1code/LCSmergespiralcats.py | Python | gpl-3.0 | 18,319 | [
"Galaxy"
] | 704a063e114e71be3c135171e99afdd863ed36adf16335fa103d5b94d0dfc7b2 |
import re
import logging
import pybel.constants as pc
from collections import defaultdict
from pybel.struct import has_protein_modification
from pybel.canonicalize import edge_to_bel
from pybel.resources import get_bel_resource
from indra.statements import *
from indra.sources.bel.rdf_processor import bel_to_indra, che... | pvtodorov/indra | indra/sources/bel/processor.py | Python | bsd-2-clause | 28,892 | [
"Pybel"
] | 54b5f0d09faf8570d68e8045c84f32522030e639bb87a2ad1df60e051299b227 |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | alsrgv/tensorflow | tensorflow/python/keras/layers/kernelized_test.py | Python | apache-2.0 | 16,217 | [
"Gaussian"
] | 92a3359a2f185e64ab4acd81179fdea6201da82b995b35be2124abfb255eb411 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | pkreissl/espresso | testsuite/python/thole.py | Python | gpl-3.0 | 3,279 | [
"ESPResSo"
] | 0be351882f919f94b2a0261acb164bbad5b41f444390a0c9437a55a7daed41a2 |
""" Test functions for stats module
"""
from __future__ import division, print_function, absolute_import
import warnings
import re
import sys
from numpy.testing import (TestCase, run_module_suite, assert_equal,
assert_array_equal, assert_almost_equal, assert_array_almost_equal,
assert_allclose, assert_, asse... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/scipy/stats/tests/test_distributions.py | Python | gpl-2.0 | 86,559 | [
"Gaussian"
] | 028b141b0f159c49c34c75f0a764e3e4535d57baf808f56027faff5495486f3d |
# -*- coding: iso-8859-15 -*-
"""This is just here to make pylint happy """
# Copyright (C) 2002-2009 Tobias Klausmann
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the ... | smulloni/pymetar | pymetar.py | Python | gpl-2.0 | 39,961 | [
"CRYSTAL"
] | c75c07b0a6fffdb8ffdec1764635b8726115ac457917597f941765dbddf90ee2 |
import os
import shutil
import struct
import tempfile
import warnings
import shlex
import subprocess as sp
import numpy as np
from . import database
from . import anat
def get_paths(subject, hemi, type="patch"):
base = os.path.join(os.environ['SUBJECTS_DIR'], subject)
if type == "patch":
return os.pa... | CVML/pycortex | cortex/freesurfer.py | Python | bsd-2-clause | 14,249 | [
"Mayavi"
] | 8b3db23bb2fda8eddae5b32f2568204259a60e9d437daf43683e7fc5bb6cfb88 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-spanner | tests/unit/gapic/spanner_v1/test_spanner.py | Python | apache-2.0 | 151,706 | [
"Octopus"
] | 8c5a36883a3cdd603c066c79657cba51b6ac347836d6d758d24be4d44552b153 |
#!/usr/bin/env python
# -*- coding: UTF-8 -*-
"""
Run through NCBI vecscreen on a local machine.
"""
import os.path as op
import sys
from jcvi.utils.range import range_merge
from jcvi.formats.fasta import tidy
from jcvi.formats.blast import BlastLine
from jcvi.formats.base import must_open
from jcvi.apps.align impor... | sgordon007/jcvi_062915 | apps/vecscreen.py | Python | bsd-2-clause | 3,165 | [
"BLAST"
] | 239769c4145d9c1aade0096906d3579c34a58b649b59fe1552c938577cd8ec26 |
"""This module provides a dictionary of rgb values with keys of color names.
"""
color_table = """Aero #7CB9E8 49% 73% 91% 206° 70% 70% 47% 91%
Aero blue #C9FFE5 79% 100% 90% 151° 100% 89% 21% 100%
African violet #B284BE 70% 52% 75% 288° 31% 63% 31% 75%
Air Force blue (RAF) #5D8AA8 36% 54% 66% 204° 30% 51% 45% 66%
Ai... | jkitchin/pycse | pycse/colors.py | Python | gpl-2.0 | 34,118 | [
"Amber",
"BLAST"
] | 4d7e9fc5be34dcbc7b2d03e8c8c0053bea2076538132da8ab006256f31ef5732 |
from flask import Flask, render_template, session, request, redirect
import random
app = Flask(__name__)
app.secret_key = 'my_secret_key'
@app.route('/')
def index():
if not 'gold' in session:
session['gold'] = 0
if not 'activities' in session:
session['activities'] = []
return render_templ... | jiobert/python | Francisco_Trujillo/Assignments/flaskolympics/olympics6/server.py | Python | mit | 777 | [
"CASINO"
] | 4aa50803f2600695533031e6cc8b7f5ed6955fe2abf84f55153da4d3463d4e52 |
"""
Generate artificial waveforms of weakly electric fish.
The two main functions are
generate_wavefish()
generate_pulsefish()
for generating EODs of wave-type and pulse_type electric fish, respectively.
The following functions use the two functions to generate waveforms of specific fishes:
generate_alepto(): mimi... | jfsehuanes/thunderfish | thunderfish/fakefish.py | Python | gpl-3.0 | 21,706 | [
"Gaussian"
] | acd6a041bff798e3f5bfc8babbd9b5944098ebc40aa2f172886b9b401599738e |
# Copyright 2014 Roberto Brian Sarrionandia
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | sarrionandia/tournatrack | trackgrid.py | Python | apache-2.0 | 2,395 | [
"Brian"
] | 2ca9eab363931ac4c17681ff1cac4fae4e1f15e7bb2a57d66b2027e64503b52d |
import espressopp
# create default Lennard Jones (WCA) system with 0 particles and cubic box (L=10)
system, integrator = espressopp.standard_system.LennardJones(0, (10*1.12, 10*1.12, 10*1.12))
C_FIXED = 1
C_FREE = 0
# fix x,y and z coord axis
fixMask = espressopp.Int3D(C_FREE, C_FIXED, C_FREE)
# create a particel g... | fedepad/espressopp | examples/fix_particles/fix_particles.py | Python | gpl-3.0 | 1,157 | [
"VMD"
] | bc9f1557deb43c923a039ecd0bfd69e656fbab6288694b805cb25d46c9bc9f56 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/fci/test/test_spin0.py | Python | apache-2.0 | 7,320 | [
"PySCF"
] | 007e83a4f55a0265d73a21a8ccc8d317db2309aa1cfddc67cc8abd23ddbbc532 |
# Orca
#
# Copyright 2005-2008 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | GNOME/orca | src/orca/scripts/switcher/__init__.py | Python | lgpl-2.1 | 905 | [
"ORCA"
] | 39e6edece30263d6d9955eccc37d16b79b7e88407ef5acec630667280fc178fc |
# coding=utf-8
# Copyright 2022 The Tensor2Tensor Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | tensorflow/tensor2tensor | tensor2tensor/models/research/moe_experiments.py | Python | apache-2.0 | 14,773 | [
"MOE"
] | 210f8bd437be992eb92be019e94aa50020e798de7fa1306564e9f789fe8b3cc5 |
# Copyright 2007 by Michiel de Hoon. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
This module provides code to work with the sprotXX.dat file from
SwissProt.
http://www.ex... | bryback/quickseq | genescript/Bio/SwissProt/__init__.py | Python | mit | 20,735 | [
"Biopython"
] | a6862585be8d716ac32860dcc62c3a7192c5a748a04ae520ffa69c43b0a82660 |
# -*- coding: utf-8 -*-
__author__ = 'Sindre Nistad'
from pickle import load
import neurolab.train as train
import Database.connector as conn
import Classifier.neural_network as nn
def run():
# conn.bind()
# conn.disconnect(True, True)
conn.connect()
# set_norm_points_table(True)
# set_extended... | cLupus/neighborhood_classifier | src/test.py | Python | gpl-3.0 | 1,334 | [
"Gaussian"
] | 8b0fd0e5270a4d8507de7412912e151f735a5e6b6975b1336561d58df93846c7 |
#!/usr/bin/python3
# coding=utf-8
"""reads barometric pressure sensor and writes it to UDP socket with timestamp available
"""
import socket
from datetime import datetime
from struct import pack
from time import sleep
from time import time
from os import _exit as dumbnrun
import ms5637
__author__ = 'Moe'
__copyright_... | wadda/Bari | udp_spitter.py | Python | mit | 1,474 | [
"MOE"
] | 0088b89d5258863ad1ee29cabd06a78b298f9dffcccdf7688dae167483fa00d6 |
#!/usr/bin/python
#
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required b... | dietrichc/streamline-ppc-reports | examples/adwords/v201406/advanced_operations/add_text_ad_with_upgraded_urls.py | Python | apache-2.0 | 4,095 | [
"VisIt"
] | 750e6f1dbd842bb1ecf3b0670e63d685388d5bec0591de731ebea31de1340c88 |
# Made by Vice - cleanup by DrLecter
# this script is part of the Official L2J Datapack Project.
# Visit http://forum.l2jdp.com for more details.
import sys
from com.l2scoria import Config
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import QuestState
from com.l2scoria.... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/618_IntoTheFlame/__init__.py | Python | gpl-3.0 | 3,899 | [
"VisIt"
] | 315a306b995479bf8a0f80197997941e5902999043aaf873916cca387163336a |
"""
Acceptance tests for the Import and Export pages
"""
from nose.plugins.attrib import attr
from datetime import datetime
from flaky import flaky
from abc import abstractmethod
from bok_choy.promise import EmptyPromise
from .base_studio_test import StudioLibraryTest, StudioCourseTest
from ...fixtures.course import... | solashirai/edx-platform | common/test/acceptance/tests/studio/test_import_export.py | Python | agpl-3.0 | 16,957 | [
"VisIt"
] | b18909a1b6a0b7740eeca58640823e0a614117caa7bd743d7c57a088b342c752 |
#! /usr/bin/env python3
###############################################################################
# #
# GALORE: Gaussian and Lorentzian broadening for simulated spectra #
# ... | SMTG-UCL/galore | galore/cli/galore.py | Python | gpl-3.0 | 12,020 | [
"GPAW",
"Gaussian",
"VASP",
"pymatgen"
] | 9f90ef0dc184d384b3beeddb07c23b863cb4c33dbfedb7f3d3b1a94450ddb860 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006-2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Fou... | andrebellafronte/stoq | tests/test_interfaces.py | Python | gpl-2.0 | 1,529 | [
"VisIt"
] | 574310fbd88d9a96d617b4fa629512e1636aff2318dce6bc3ecf9999b0d1ad1c |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
# create a renderwindowinteractor
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
# create source
source = vtk.vtkCylinderSource()
source.SetCenter(0,0... | FedericoV/FractalMammaryLobule | tests/cutting.py | Python | gpl-3.0 | 5,668 | [
"VTK"
] | 84090628d3a93cbe1734fe29916448065ad50305901d53534f8617b4434c8188 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/driver/qcdb/qchem.py | Python | gpl-2.0 | 18,510 | [
"CFOUR",
"Psi4",
"Q-Chem"
] | 513e2da05f9cda6f9727c043eee91ad00d7b9e9e6b049e22c4eab3410fbadf18 |
# revlog.py - storage back-end for mercurial
#
# Copyright 2005-2007 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
"""Storage back-end for Mercurial.
This provides efficient delta storage with O(1... | iaddict/mercurial.rb | vendor/mercurial/mercurial/revlog.py | Python | mit | 45,735 | [
"VisIt"
] | 6cc6785e649b4c436d2f607516ef97e501bbefc16ea815d7f5aef30975d2f809 |
# -*- coding: utf-8 -*-
import os
import datetime
from pysite.lib import load_site_config
NAME = "eventlist"
TITLE = "Loads a list of events."
DESCR = """
*************
The Eventlist
*************
Basic Format
============
An eventlist is a YAML mapping. The field ``EVENTS`` contains the list of
events.
Each e... | dmdm/PySite | pysite/plugins/eventlist/__init__.py | Python | agpl-3.0 | 4,369 | [
"VisIt"
] | 48231466f2def6331a423e89f728321cfcda536d7cf1cd43b66f1db1ffa2dda8 |
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# License: BSD 3 clause
from itertools import chain, combinations
import numbers
import numpy as np
f... | ycaihua/scikit-learn | sklearn/preprocessing/data.py | Python | bsd-3-clause | 39,819 | [
"Gaussian"
] | b2ced4967ee6f2b90524b880e586d45b961e48da4ab0f9489d89831eea9c7e39 |
# This file is part of cclib (http://cclib.sf.net), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2007, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or later. You shou... | Clyde-fare/cclib_bak | test/testTDun.py | Python | lgpl-2.1 | 1,911 | [
"Gaussian",
"cclib"
] | 2e26e9a04d571c9bdb934c3b179202dfe1f58ff2d8953b811f32d21c6e22cf6f |
import subprocess
import os
import datetime
import wand.image
import glob
def pnmtopdf(pnmfile, pdffile, resolution=None):
with wand.image.Image(filename=pnmfile, resolution=resolution) as pnm:
with pnm.convert('pdf') as pdf:
pdf.save(filename=pdffile)
os.remove(pnmfile)
scan_options = {
... | esben/brother-scan | brscan/scanto.py | Python | gpl-3.0 | 2,260 | [
"ADF"
] | bb9d9b8ce9ab33163d346f81043a9877f18eb22734f320139954c89acd4096fe |
# Copyright (C) 2001 greg Landrum and Rational Discovery LLC
"""basic unit testing code for query mols
"""
from __future__ import print_function
from rdkit import RDConfig
import unittest,os,sys
class TestCase(unittest.TestCase):
def setUp(self):
print('\n%s: '%self.shortDescription(),end='')
# decipher t... | strets123/rdkit | Code/GraphMol/UnitTestQueryMol.py | Python | bsd-3-clause | 734 | [
"RDKit"
] | df946def9cd1147dd9b287a4e6166c91dbe5b1d2d61763ddd342fbc989fa6d3a |
names = [
{
"GivenName":"Joe",
"Surname":"Schmoe",
"EmailAddress":"test@example.com",
"TelephoneNumber":"402-427-6916",
"StreetAddress":"785 Oak Way",
"City":"Kennard",
"State":"NE",
"ZipCode":68034
},
{
"GivenName":"Ethel",
"Surname":"Wagner",
"EmailAddress":"EthelGWag... | rhefner1/ghidonations | sandbox/individual_names.py | Python | apache-2.0 | 124,418 | [
"Brian",
"COLUMBUS",
"Elk"
] | 2dd7cf48ce75efe4840b151d9b118863b5415c0c01c6924a751a8e920a09f488 |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | sasha-gitg/python-aiplatform | google/cloud/aiplatform_v1beta1/types/explanation.py | Python | apache-2.0 | 25,492 | [
"Gaussian"
] | 8d3f086c244608d3cfcf0e313a372315454b55f712b4534fe9b84c148090d17c |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | TheTimmy/spack | var/spack/repos/builtin/packages/r-limma/package.py | Python | lgpl-2.1 | 1,617 | [
"Bioconductor"
] | 91e8110b2fbde73bde2429bacfe01882dc6d3318814bb59e5fe8b5dec59661c8 |
# -*- coding: utf-8 -*-
u"""Traits-based GUI for head-MRI coregistration.
Hierarchy
---------
This is the hierarchy of classes for control. Brackets like [1] denote
properties that are set to be equivalent.
::
CoregFrame: GUI for head-MRI coregistration.
|-- CoregModel (model): Traits object for estimating the h... | kambysese/mne-python | mne/gui/_coreg_gui.py | Python | bsd-3-clause | 89,515 | [
"Mayavi"
] | f33b1f235b43b0ea0453472bb0dd9435a270841e09afb0cd227a71f7d97df807 |
#!/usr/bin/env python
########################################################################
# File : dirac-proxy-info.py
# Author : Adrian Casajus
########################################################################
"""
Print information about the current proxy.
Example:
$ dirac-proxy-info
subject ... | yujikato/DIRAC | src/DIRAC/FrameworkSystem/scripts/dirac_proxy_info.py | Python | gpl-3.0 | 6,434 | [
"DIRAC"
] | 26f1a9e3550074fa0a3948fa6ddda6da14d1e6c3157432c150186dd630c0c18d |
# -*- coding: utf-8 -*-
"""
Regression tests for the Test Client, especially the customized assertions.
"""
import os
from django.conf import settings
from django.core.exceptions import SuspiciousOperation
from django.core.urlresolvers import reverse
from django.template import (TemplateDoesNotExist, TemplateSyntaxErr... | 350dotorg/Django | tests/regressiontests/test_client_regress/models.py | Python | bsd-3-clause | 41,597 | [
"VisIt"
] | 4346c977581195ed8735f71c2182c68fe61da639aea9713facdb9e7a8597ab7b |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | gunan/tensorflow | tensorflow/python/autograph/pyct/cfg.py | Python | apache-2.0 | 32,187 | [
"VisIt"
] | ad80f35d12dbbf5eb4f3222b5cb28208caaf65b39bdd565458a68b260c9e12d7 |
# -*- coding: utf-8 -*-
# Generated by Django 1.11.4 on 2017-09-15 20:21
from __future__ import unicode_literals
from django.db import migrations, models
import django.db.models.deletion
class Migration(migrations.Migration):
dependencies = [
('app', '0008_auto_20170906_2108'),
]
operations = [... | Gimpneek/exclusive-raid-gym-tracker | app/migrations/0009_auto_20170915_2021.py | Python | gpl-3.0 | 3,074 | [
"VisIt"
] | 9c74c2a412f2445aca57c072a96456801ec2d7887b37de0b308f58f9e0460c00 |
"""
API operations on the library datasets.
"""
import glob
import os
import os.path
import string
import sys
import tempfile
import zipfile
from galaxy import exceptions
from galaxy import util
from galaxy import web
from galaxy.exceptions import ObjectNotFound
from galaxy.managers import folders, roles
from galaxy.to... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/webapps/galaxy/api/lda_datasets.py | Python | gpl-3.0 | 38,213 | [
"Galaxy"
] | e6fb2f0aca517dfac2a217c23284b7b90c93da8a7b4aa665777cfb979c9509ac |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2014-2017 The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this s... | jasperges/blenderseed | render.py | Python | mit | 10,160 | [
"VisIt"
] | 82177af98476ed518a452a483b491c801d6f23fe6d54d14e7c2244a0da78a4ad |
# Copyright (C) 2014
# Pierre de Buyl
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it ... | espressopp/espressopp | src/interaction/MirrorLennardJones.py | Python | gpl-3.0 | 4,881 | [
"ESPResSo"
] | 01b20779b4ef5ddc2ff7db2d7e900a1fd82639912f8eb161803ae56199cbc0c4 |
# Copyright 2009 by Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Command line wrapper for the multiple alignment program PRANK.
"""
from __future__ import... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Align/Applications/_Prank.py | Python | gpl-2.0 | 10,813 | [
"Biopython"
] | 37217374bb3bc85502a1dae3f0386fa74d65faf932170f4de3fa7fbf27e3f3ea |
#!/usr/bin/env python
# vim: tabstop=8 expandtab shiftwidth=4 softtabstop=4
__author__ = "Ole Christian Weidner"
__copyright__ = "Copyright 2012, Ole Christian Weidner"
__license__ = "MIT"
import bliss.saga
from bliss.saga.Object import Object
from bliss.saga.Attributes import AttributeInterface
from bliss.... | saga-project/bliss | bliss/saga/job/Job.py | Python | mit | 14,254 | [
"Galaxy"
] | ae648edcbcb036b6092702cc1fd467e3152d26b37630acb8a101039a2cc44c44 |
# Written by Lauri Lehtovaara 2008
from gpaw.utilities.blas import axpy
from gpaw.utilities.blas import dotc
class MultiBlas:
def __init__(self, gd):
self.gd = gd
# Multivector ZAXPY: a x + y => y
def multi_zaxpy(self, a,x,y, nvec):
if isinstance(a, (float, complex)):
for i in... | qsnake/gpaw | gpaw/tddft/utils.py | Python | gpl-3.0 | 5,250 | [
"GPAW"
] | 66954687947ed918a02d7d2c564edb86e5a225be3c7c4f60d5e4148ee474a2ff |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
# pylint: disable=no-init,invalid-name,too-ma... | mganeva/mantid | Framework/PythonInterface/test/python/mantid/geometry/CrystalStructureTest.py | Python | gpl-3.0 | 3,785 | [
"CRYSTAL"
] | 8f9dd6e07fd2725ee7accd92b626bc5840a166eedea3f6fad4c95aba8c473643 |
import zmq
from .back_queue import BackQueue
from .front_queue import FrontQueue
from multiprocessing import Process
import logging
from mosquito.messages import DataList
class Coordinator(object):
"""
Coordinator used to keep track of all the URLs seen and what URLs to crawl
next
"""
def __init... | MVilstrup/mosquito_1 | mosquito/coordinator/__init__.py | Python | apache-2.0 | 2,557 | [
"VisIt"
] | 692afda166860bb7b111fb7c9797377eedcfe4566805fffbffb0170b72a2a759 |
"""
set precomputation parameters
-----------------------------
Parameters to set the precomputations in order to facilitate the computation
model tasks
"""
max_r0 = 20.
max_r1 = 50.
S0 = 3.4105868102821946
S1 = 8.770781287761192
#### Parameters lists
pars_qvals = [{'codename': 'porportionaldates',
'p... | tgquintela/Mscthesis | set_precomputationparameters.py | Python | mit | 2,240 | [
"Gaussian"
] | fb710b481e37660f7f4433c3fd0d2f363293671d6e8c6319c313d336103827ff |
#! /usr/bin/env python
from MDAnalysis import *
from MDAnalysis.analysis.align import rotation_matrix
import numpy
import math
u = Universe("init.pdb", "sampled.pos.pdb")
v = Universe("init.pdb")
mob1 = u.selectAtoms("segid A and resid 1:176")
ref1 = v.selectAtoms("segid A and resid 1:176")
f = open('rmsd_mda.dat',... | demharters/git_scripts | rmsd_1mi5.py | Python | apache-2.0 | 472 | [
"MDAnalysis"
] | d10e9acc42d39c0db92bc6c485664af6563f8d1716925579f1b98bfc0b2fc222 |
#!/usr/bin/env python
# -*- coding: latin-1 -*-
#
# Copyright 2016-2021 Blaise Frederick
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICEN... | bbfrederick/rapidtide | rapidtide/resample.py | Python | apache-2.0 | 28,351 | [
"Gaussian"
] | 507201c93c079d3d8ed4d63a263d5f047df5a57c4b39cb12b72e8ff65e1c69f6 |
# -*- coding: utf-8 -*-
"""
Author
------
Bo Zhang
Email
-----
bozhang@nao.cas.cn
Created on
----------
- Fri Nov 25 12:53:24 2016
Modifications
-------------
-
Aims
----
- utils for apertures
"""
import numpy as np
from joblib import Parallel, delayed
from scipy.interpolate import interp1d
from scipy.signal imp... | hypergravity/hrs | twodspec/aperture.py | Python | bsd-3-clause | 33,739 | [
"Gaussian"
] | d25a935d46e7100f293a3e4a9b98f78352260ad778d9e0a5f648022957951496 |
#!/usr/bin/env python
import numpy as np
"""This module contains MISMIP constants and parameters, as well as functions
computing theoretical steady state profiles corresponding to various MISMIP
experiments.
It should not be cluttered with plotting or NetCDF output code.
"""
def secpera():
"Number of seconds pe... | talbrecht/pism_pik07 | examples/mismip/mismip2d/MISMIP.py | Python | gpl-3.0 | 9,436 | [
"NetCDF"
] | 2b067e5b96465f0d5a3894066abc7ef7dc5f3e7dc5fa1bf04761ee8d18e435a0 |
from functools import partial
from logging import getLogger
from pogo_async import PGoApi, exceptions as ex
from pogo_async.auth_ptc import AuthPtc
from pogo_async.utilities import get_cell_ids
from pogo_async.hash_server import HashServer
from asyncio import sleep, Lock, Semaphore, get_event_loop
from random import ch... | Claod44/GokemonReborn | pokeminer/worker.py | Python | mit | 50,226 | [
"VisIt"
] | d7674be05f6a68ea5f7c4f716fc8db9b0f7a846852c29f8dda258d0619595e7e |
import cPickle as pickle
from cStringIO import StringIO
import numpy as np
import scipy.sparse
from numpy.testing import (assert_almost_equal, assert_array_equal,
assert_array_almost_equal, assert_equal)
from ..naive_bayes import GaussianNB, BernoulliNB, MultinomialNB
# Data is just 6 separ... | cdegroc/scikit-learn | sklearn/tests/test_naive_bayes.py | Python | bsd-3-clause | 4,208 | [
"Gaussian"
] | 42703ae8d5001c516b46a195072be2ce77ba95390a1977122efebb7001c42ec9 |
import numpy as np
import os
import h5py
import json
from .utils import asymptotic_error_quantile, bootstrap,\
dict_to_margins, margins_to_dict, matrix_to_list
from sklearn.utils import check_random_state
from scipy.stats import gaussian_kde, norm
from .vinecopula import Conversion
class ListDependenceResult(li... | NazBen/impact-of-dependence | depimpact/result.py | Python | mit | 32,314 | [
"Gaussian"
] | 88c77e5852a9850c54cb3ba9c219b429fd82df577624b1c8d7fbe7134f469c0b |
import numpy as np
from numpy.testing import assert_equal, assert_raises, assert_almost_equal
from skimage.measure import LineModel, CircleModel, EllipseModel, ransac
from skimage.transform import AffineTransform
def test_line_model_invalid_input():
assert_raises(ValueError, LineModel().estimate, np.empty((5, 3))... | almarklein/scikit-image | skimage/measure/tests/test_fit.py | Python | bsd-3-clause | 6,311 | [
"Gaussian"
] | 93c6e700c8f357ef140cca9fab43c50f3d82e74a9b66118864e349c205e852c6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from setuptools import setup
setup(
name='mongodb-chemistry',
version='0.0.1',
author='Matt Swain',
author_email='m.swain@me.com',
license='MIT',
url='https://github.com/mcs07/mongodb-chemistry',
packages=['mchem'],
description='Proof of co... | mcs07/mongodb-chemistry | setup.py | Python | mit | 1,197 | [
"RDKit"
] | 319dfb4adbb580c1c1535ab567acc80a91ccd22b32b7b96283d9fe1db61a12fb |
# DFF -- An Open Source Digital Forensics Framework
# Copyright (C) 2009-2010 ArxSys
# This program is free software, distributed under the terms of
# the GNU General Public License Version 2. See the LICENSE file
# at the top of the source tree.
#
# See http://www.digital-forensic.org for more information about this... | elthariel/dff | ui/gui/mainWindow.py | Python | gpl-2.0 | 9,488 | [
"VisIt"
] | 180b5bc5613e0950285a4e6e215e012679d61afb808b881711a0de2de3c7a764 |
# coding=utf-8
# Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | AlexEKoren/grumpy | compiler/stmt_test.py | Python | apache-2.0 | 14,166 | [
"VisIt"
] | 9e03c61f7bffafe69adc4a6c4517d31e87f81cfc0b4a6ae7cfc5de46253182a1 |
import math
import numpy
from chainer import cuda
from chainer.functions.connection import deconvolution_2d
from chainer import initializers
from chainer import link
class Deconvolution2D(link.Link):
"""Two dimensional deconvolution function.
This link wraps the :func:`~chainer.functions.deconvolution_2d`... | benob/chainer | chainer/links/connection/deconvolution_2d.py | Python | mit | 4,249 | [
"Gaussian"
] | 92703b7a188aa1c93ada9dd0c546724c30e327dca1dc3d213baf261c4d16942e |
""".. module:: Test_DAG
Test cases for DIRAC.Core.Utilities.DAG module.
"""
import unittest
# sut
from DIRAC.Core.Utilities.DAG import DAG, makeFrozenSet
__RCSID__ = "$Id $"
########################################################################
class DAGTestCase( unittest.TestCase ):
""" Test case for DIRAC.... | Andrew-McNab-UK/DIRAC | Core/Utilities/test/Test_DAG.py | Python | gpl-3.0 | 8,935 | [
"DIRAC"
] | 76020908d77c203f0e9b488078d7467c01f1aa0c3ee8bca07e330a0f8d7ccb1b |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/ajax/timers.py | Python | gpl-2.0 | 15,817 | [
"VisIt"
] | 21400610e64287e2435239e8b6e0c57e572d7bbe4626e52389fe66f291b1f0f3 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides conversion between the Atomic Simulation Environment
Atoms object and pymatgen Structure objects.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Proje... | gmatteo/pymatgen | pymatgen/io/ase.py | Python | mit | 2,883 | [
"ASE",
"pymatgen"
] | 78aa46bb0ae56537598c5db84b4e2a2a93bd0c2c3d668bdfa2fee5ac5d637ae6 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | j00bar/ansible | lib/ansible/modules/network/lenovo/cnos_rollback.py | Python | gpl-3.0 | 11,138 | [
"VisIt"
] | 66f078cd7a607af7479e0544c667d65172187d9eb3ba9a54cd5696acd667a52b |
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