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#
# @file TestWriteMathML.py
# @brief Write MathML unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file locat... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/math/TestWriteMathML.py | Python | bsd-3-clause | 18,887 | [
"Avogadro",
"VisIt"
] | 2666ed5e04d209f1c147bd9f759d0597554d81bc53bd143d39ffb8669d0b3ed9 |
"""
.. module: security_monkey.auditors.custom.AnchoreAuditor
:platform: Unix
.. version:: $$VERSION$$
.. moduleauthor:: Pritam D. Gautam <pritam.gautam@nuagedm.com> @nuagedm
"""
from security_monkey.auditor import Auditor
from security_monkey.watchers.custom.anchoreengine import AnchoreEngine
ANCHORE_VULN_TAG ... | stackArmor/security_monkey | security_monkey/auditors/custom/anchore.py | Python | apache-2.0 | 2,035 | [
"VisIt"
] | 62560ee9639d7e9dcd61f67140cee32d7d3b11b98c670019763a473ed362d8d8 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Ansible module to manage PaloAltoNetworks Firewall
# (c) 2016, techbizdev <techbizdev@paloaltonetworks.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publish... | simonwydooghe/ansible | lib/ansible/modules/network/panos/_panos_import.py | Python | gpl-3.0 | 5,413 | [
"Galaxy"
] | a3594fb41aff7892c0c65d67dde6558f43887607b000dd236778d28e7f8abe48 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module implements the IRAFStarFinder class.
"""
import inspect
import warnings
from astropy.nddata import extract_array
from astropy.table import QTable
from astropy.utils import lazyproperty
import numpy as np
from .core import StarFinderBase, ... | astropy/photutils | photutils/detection/irafstarfinder.py | Python | bsd-3-clause | 18,591 | [
"Gaussian"
] | c2a9fd53dc19c41d4d6c7f2867d680b73f85de3643c2f8bf036bc77961e824cd |
import tensorflow as tf # neural network for function approximation
import gym # environment
import numpy as np # matrix operation and math functions
from gym import wrappers
import gym_morph # customized environment for cart-pole
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import time
star... | GitYiheng/reinforcement_learning_test | test03_monte_carlo/t42_change_gamma.py | Python | mit | 7,663 | [
"NEURON"
] | a6768668e6035f2e4c617127f2cc967fc31af3d8b67d1ec4189944f0c177273b |
import pymatgen
from pymatgen.core.composition import Composition
from pymatgen.matproj.rest import MPRester
from pymatgen.phasediagram.maker import PhaseDiagram
from pymatgen.phasediagram.maker import CompoundPhaseDiagram
from pymatgen.phasediagram.entries import PDEntry
from pymatgen.phasediagram.entries import Trans... | mmdg-oxford/papers | Filip-JPCC-2018/Scripts/quatphase.py | Python | gpl-3.0 | 4,028 | [
"pymatgen"
] | 5f171954b607bdf8a3d799bbc9e672b62a78789846f76cffb35612aa739d67c9 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/tests/input_tab/BlockTree/test_BlockTree.py | Python | lgpl-2.1 | 10,469 | [
"MOOSE"
] | e751a29f4fd1780e1cd35a54eb7fa7461e57f9d70fe494109775f7c7a3f98d9c |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Kleptobismol/scikit-bio | skbio/draw/_distributions.py | Python | bsd-3-clause | 30,658 | [
"scikit-bio"
] | aa64db627e816ca64fb16ea873f19485cf34f08df7d45e7e5c32fba28030934e |
# test_hcinput.py
"""
Series of tests for hcinput.py
"""
# Import modules
from heisenberg_coefficients import hcinput
from pathlib import Path
import unittest
import numpy as np
# Create test classes
class TestINPUT(unittest.TestCase):
"""
Series of tests for input.py module.
"""
# Setup
def setU... | jkglasbrenner/heisenberg_coefficients | heisenberg_coefficients/tests/test_hcinput.py | Python | gpl-3.0 | 3,971 | [
"VASP"
] | 986f2eb4366f6332dff2c4570364dee66c2224825ff14894ea9443807f49f559 |
#!/usr/bin/env python2
desc="""Align pairs/mates onto contigs and run SSPACE scaffolder.
Example:
fastq2sspace.py -v -f contigs.fa -n pe300 pe600 pe5000 -1 ../../_archives/PL429.{3,6,50}00_read1*.fastq.gz -2 ../../_archives/PL429.{3,6,50}00_read2*.fastq.gz -i 300 600 5000 -s 0.15 0.25 0.5 -t FR FR RF -u 5000000
"""
epi... | lpryszcz/bin | fastq2sspace.py | Python | gpl-3.0 | 10,284 | [
"Bowtie"
] | 674809718308b439811748c7da6e5751c3c8c43279229fd6a3b3572fe7b4662f |
""" DataStore is the service for inserting accounting reports (rows) in the Accounting DB
"""
import datetime
from DIRAC import S_OK, S_ERROR, gConfig, gLogger
from DIRAC.AccountingSystem.DB.MultiAccountingDB import MultiAccountingDB
from DIRAC.ConfigurationSystem.Client import PathFinder
from DIRAC.Core.DISET.Reque... | Andrew-McNab-UK/DIRAC | AccountingSystem/Service/DataStoreHandler.py | Python | gpl-3.0 | 7,935 | [
"DIRAC"
] | cd8241852eb39d50790718bd801bc3992423d8fb839f8c3f33e15257d675381d |
"""
.. module:: polar
:platform: Windows
:synopsis: Implementation of a class for optical
pumping simulations.
.. moduleauthor:: Wouter Gins <wouter.gins@fys.kuleuven.be>
"""
import numpy as np
from satlas.profiles import Voigt, Lorentzian
from satlas.basemodel import BaseModel
from scipy import integrate... | woutergins/polarization | polarization/satlasaddon.py | Python | mit | 24,328 | [
"Gaussian"
] | f59d9f9d7ab8a6292aacd4d524c74aab5c77b947823ae57f4c71a62afd1cc6f8 |
# Copyright 2007 by Tiago Antao <tiagoantao@gmail.com>. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
'''
Support for asynchronous execution.
'''
import os
import thread
... | bryback/quickseq | genescript/Bio/PopGen/Async/__init__.py | Python | mit | 3,538 | [
"Biopython"
] | 86dcd9efb502dc2e47335e6a7ba3b9ca35596e70220ee1e3250dd1142a071047 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('whsites', '0002_auto_20150102_1905'),
]
operations = [
migrations.RemoveField(
model_name='visit',
n... | robjordan/unesco_project | unesco/whsites/migrations/0003_auto_20150207_1347.py | Python | apache-2.0 | 521 | [
"VisIt"
] | 7d8c25ea03b76af8085a00e2a8cfdd7443d48028693f58bbf467b251646c790a |
# coding=utf-8
import logging
from deprecated import deprecated
from requests import HTTPError
from .base import BitbucketBase
from atlassian.bitbucket.cloud import Cloud
log = logging.getLogger(__name__)
class Bitbucket(BitbucketBase):
def __init__(self, url, *args, **kwargs):
if "cloud" not in kwargs... | AstroTech/atlassian-python-api | atlassian/bitbucket/__init__.py | Python | apache-2.0 | 121,356 | [
"VisIt"
] | 000e57782fa72ae3238387610935d09ca4fa67b154909d8828cb3e818b3c95eb |
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
from .posterior import PosteriorExact as Posterior
from ...util.linalg import pdinv, dpotrs, tdot
from ...util import diag
import numpy as np
from . import LatentFunctionInference
log_2_pi = np.log(2*n... | mikecroucher/GPy | GPy/inference/latent_function_inference/exact_gaussian_inference.py | Python | bsd-3-clause | 2,705 | [
"Gaussian"
] | a0472f9307602036d832c22c9aac892e4de4ba198191dc44e454f21e8711b143 |
from __future__ import absolute_import, division, print_function
import ast
from jaspyx.visitor import BaseVisitor
class AugAssign(BaseVisitor):
def visit_AugAssign(self, node):
attr = getattr(self, 'AugAssign_%s' % node.op.__class__.__name__, None)
if attr is None:
# Rewrite the expre... | ztane/jaspyx | jaspyx/visitor/augassign.py | Python | mit | 1,275 | [
"VisIt"
] | a06302d2f72adc7bfe55117eabd948376421f7b5d4824b63c7b547723e212dfa |
#!/usr/bin/python
# Filename: basic.py
#
# Code by Martin Jucker, distributed under an MIT License
# Any publication benefitting from this piece of code should cite
# Jucker, M 2014. Scientific Visualisation of Atmospheric Data with ParaView.
# Journal of Open Research Software 2(1):e4, DOI: http://dx.doi.org/10.5334/j... | mjucker/pv_atmos | basic.py | Python | mit | 16,796 | [
"NetCDF",
"ParaView"
] | 66e03f37ebde96bd5e77a8005d21f380fde61b92743ad858ad48d52dee621ecc |
#!/usr/bin/env python
#########################################################################################
#
# Extract spinal levels
#
#
# ---------------------------------------------------------------------------------------
# Copyright (c) 2014 Polytechnique Montreal <www.neuro.polymtl.ca>
# Author: Karun Raju... | neuropoly/spinalcordtoolbox | dev/spinal_level/sct_extract_spinal_levels.py | Python | mit | 12,573 | [
"Gaussian"
] | 59a7f2c6f5445dd0a4fc6b9049a2682437d76db6a468a079bd8d6d6a2886bc39 |
# -*- coding: utf-8 -*-
"""A cool pool of tools for PyBEL."""
from .version import get_version # noqa: F401
| pybel/pybel-tools | src/pybel_tools/__init__.py | Python | mit | 111 | [
"Pybel"
] | 94a7803bf7c9fe74b2f60104dac0439e36394706c26176029d8c522b20700ef8 |
#!/usr/bin/env python
########################################################################
# $Header: /local/reps/dirac/DIRAC3/scripts/dirac-version,v 1.3 2008/03/22 10:39:02 rgracian Exp $
# File : dirac-version
# Author : Ricardo Graciani
########################################################################
... | rajanandakumar/DIRAC | Core/scripts/dirac-version.py | Python | gpl-3.0 | 484 | [
"DIRAC"
] | 31cca73682ab9fca44a27d8cd6f6178f395375cedfb91fc9e0106cef6c639985 |
#!/usr/bin/env python
'''
IP/EA-RADC calculations for closed-shell N2
'''
from pyscf import gto, scf, adc
mol = gto.Mole()
r = 1.098
mol.atom = [
['N', ( 0., 0. , -r/2 )],
['N', ( 0., 0. , r/2)],]
mol.basis = {'N':'aug-cc-pvdz'}
mol.build()
mf = scf.RHF(mol)
mf.conv_tol = 1e-12
mf.kernel()
myadc ... | sunqm/pyscf | examples/adc/01-closed_shell.py | Python | apache-2.0 | 795 | [
"PySCF"
] | 03929b5e8986aaaf1901952cdbaf776ec21e272b038feca152b3032d64036faa |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
urlpat... | omwomotieno/tunza_v3 | config/urls.py | Python | mit | 1,872 | [
"VisIt"
] | 4d72dca396a8a5115cbb407ba98889da4dce04f5369be4b3a68a98cbef846433 |
"""
@name: PyHouse_Install/src/Install/Utility.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2015-2016 by D. Brian Kimmel
@license: MIT License
@note: Created on Oct 13, 2015
@Summary:
"""
# Import system type stuff
import getpass
import os
import subpro... | DBrianKimmel/PyHouse_Install | src/Install/Utility.py | Python | mit | 1,820 | [
"Brian"
] | 7550edcd73b1c5ff41c1506b231ee8281dce864694b7fe4948d7c46c37b1df77 |
typo_dict = {
'steele stake': 'steel stake',
'gas mowe': 'gas mower',
'metal plate cover gcfi': 'metal plate cover gfci',
'lawn sprkinler': 'lawn sprinkler',
'ourdoor patio tile': 'outdoor patio tile',
'6 teir shelving': '6 tier shelving',
'storage shelve': 'storage shelf',
'American Sta... | dnc1994/Kaggle-Playground | typo_dict.py | Python | mit | 184,114 | [
"Amber",
"CRYSTAL",
"ESPResSo"
] | 302b312bff642cd702773060045e188592345fc9914d13a891c33fbd095dc095 |
# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | googleinterns/sgonks | project/services/data_updater/scripts/data_generator.py | Python | apache-2.0 | 2,700 | [
"Gaussian"
] | 644b3548b391a9704ff3c69e111e97fd24dd87e10a0b11e62ccf23f474192302 |
# -*- coding: utf-8 -*-
# Copyright 2015 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
import os
import sys
import time
import unittest
import pytest
import django
from splinter import Browser
from .base import BaseBrowse... | cobrateam/splinter | tests/test_djangoclient.py | Python | bsd-3-clause | 6,394 | [
"VisIt"
] | 2a69f52e3dfd18a311556d5446b3211ef20bbef91b808cd4ddf2cf8aa13a59ad |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | kain88-de/mdanalysis | package/MDAnalysis/selections/base.py | Python | gpl-2.0 | 8,918 | [
"CHARMM",
"Gromacs",
"MDAnalysis",
"PyMOL",
"VMD"
] | 5f01a0a402199a8258dffca0dbd6ed3bb08741b3bd20a7c7d271c8042b35f4d9 |
#!/usr/bin/env python
# The MIT License (MIT)
#
# Copyright (c) 2015 Brian Pursley
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the r... | weissan/BlockQuicksort | LomutoBlockQuickSortGenerator/sortingnetwork.py | Python | gpl-3.0 | 5,530 | [
"Brian"
] | c92605fed7a6ab99e657770824ba32a30a520bf8e8bdf49c5acd0b2ccb28c4b1 |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | juanchopanza/NeuroM | neurom/fst/tests/test_neuronfunc.py | Python | bsd-3-clause | 6,265 | [
"NEURON"
] | 3b5edf5ce0fe7fcc0f95229f4f939b63847ea0d76d16fbad8d8ad0c2e0928c10 |
# BOM_SOLAR_ASCII_TO_NETCDF.PY
#
# The input proprietary format supported by this example is a Bureau of
# Meteorology (BoM) ArcView ASCII grid file. The format contains a header
# (defines the shape and size of the grid), space-separated ASCII data, and
# tail metadata that contains internal BoM processing informatio... | KimberleyOpie/common-tools | raw_data_tools/bom_solar_ascii_to_netcdf_day.py | Python | apache-2.0 | 17,048 | [
"NetCDF"
] | 24b94e689474b3cb4eae7afcbcf0b5510b723cbd557faa53c47588783036493f |
#!/usr/bin/env python
# (C) Copyright IBM Corporation 2004
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# on the... | guorendong/iridium-browser-ubuntu | third_party/mesa/src/src/mapi/glapi/gen/gl_SPARC_asm.py | Python | bsd-3-clause | 9,011 | [
"Brian"
] | 877050027a941467c97fa5c49defee20dcbdcc0543ffbccb3acc1d0e7855df21 |
"""Generated message classes for testing version v1.
Allows developers to run automated tests for their mobile applications on
Google infrastructure.
"""
# NOTE: This file is autogenerated and should not be edited by hand.
from protorpc import messages as _messages
from googlecloudapis.apitools.base.py import encodi... | wemanuel/smry | smry/server-auth/ls/google-cloud-sdk/lib/googlecloudapis/testing/v1/testing_v1_messages.py | Python | apache-2.0 | 43,063 | [
"Galaxy"
] | 898b69899f6fa1e8d2875b30e78149f8fa41ee6ad5093321e4516c987afd4229 |
import numpy as np
import pytest
import mbuild as mb
from mbuild.formats.par_writer import write_par
from mbuild.tests.base_test import BaseTest
from mbuild.utils.io import get_fn, has_foyer
@pytest.mark.skipif(not has_foyer, reason="Foyer package not installed")
class TestPar(BaseTest):
@pytest.mark.skipif(not ... | iModels/mbuild | mbuild/tests/test_par.py | Python | mit | 1,485 | [
"CHARMM"
] | 0b317c675b5c5a1c4a11dec8fea3d0d08657afb326dcce8f5403c8bceed92dfd |
#!/usr/bin/env python
from __future__ import absolute_import, print_function
import argparse
import lsst.daf.persistence as daf_persistence
import lsst.afw.display as afw_display
def list_diffims(butler):
"""
Use the butler to figure out what data are available
Parameters
----------
butler : daf_pe... | DarkEnergyScienceCollaboration/Twinkles | bin/view_diffs.py | Python | mit | 5,616 | [
"VisIt"
] | 334c30d856d5a0ba236d6ccacdf064c15644ba68f87cf76cf529363033682bc7 |
import sys
sys.path.insert(1, "../../")
import h2o, tests
def offset_1388(ip, port):
print "Loading datasets..."
pros_hex = h2o.import_file(h2o.locate("smalldata/prostate/prostate.csv"))
pros_hex[1] = pros_hex[1].asfactor()
pros_hex[3] = pros_hex[3].asfactor()
pros_hex[4] = pros_hex[4].asfact... | bospetersen/h2o-3 | h2o-py/tests/testdir_jira/pyunit_NOPASS_pubdev_1388_offset_comparisons.py | Python | apache-2.0 | 3,007 | [
"Gaussian"
] | eaaefdfe33e8cd6cd8894c4f2ffc9383b85ccd7681517fc7a34305a70633f9b7 |
# Copyright (C) 2019-TODAY - Raphaël Valyi Akretion
# License LGPL-3.0 or later (https://www.gnu.org/licenses/lgpl-3.0.en.html).
import inspect
import logging
import sys
from odoo import SUPERUSER_ID, api, models
from .models.spec_models import SpecModel, StackedModel
_logger = logging.getLogger(__name__)
def pos... | OCA/l10n-brazil | spec_driven_model/hooks.py | Python | agpl-3.0 | 5,709 | [
"VisIt"
] | 77b2538fb1699fa4ccb143226cfeb352499240ef678b1dffd7a57a8a3e8ee2bf |
# -*- coding: utf-8 -*-
#
# Copyright (C) Pootle contributors.
#
# This file is a part of the Pootle project. It is distributed under the GPL3
# or later license. See the LICENSE file for a copy of the license and the
# AUTHORS file for copyright and authorship information.
import locale
from collections import Ordere... | r-o-b-b-i-e/pootle | pootle/apps/pootle_language/models.py | Python | gpl-3.0 | 8,392 | [
"VisIt"
] | 6db9a278a29f35f8fd04f00fa3d40a7e3f5ad4c4a124d639a862e7bcd7d093aa |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic.base import RedirectView
urlpatterns = [
url(r'^$', RedirectView.as_view(... | abirafdirp/inventory | inventory/config/urls.py | Python | bsd-3-clause | 1,565 | [
"VisIt"
] | abb15f3c64bb95ee9bb6f19cbfc0885560f03109be05ba4266249f436d3f4e9f |
#1/usr/bin/env python
#-*- coding:utf-8 -*-
'''
Created at 2010.01.14
@version: 0.0.3
@change:\n
- 2010.01.14.
- Create this file.
- 2010.01.18\n
- Test the function B{Get_rotate_matrix()}
- Add the function B{Write_rotate_matrix()}
- Add the function B{Rotate_2_vector()}
... | zhuhong/g4analysis | G4Analysis/G4_rise.py | Python | gpl-2.0 | 14,537 | [
"MDAnalysis"
] | 1e3f044fdaaeb728a2420c0912ece79c7b2dc3f0074d058fb7b4aa24b570d181 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
from Job im... | nuclear-wizard/moose | python/ClusterLauncher/PBSJob.py | Python | lgpl-2.1 | 7,056 | [
"MOOSE"
] | 61c3df806692ea73f29fdcd121cd30b9c6ad21193e443afe30acf22858a2bbfb |
# Maked by Mr. Have fun! Version 0.2
# Shadow Weapon Coupons contributed by BiTi for the Official L2J Datapack Project
# Visit http://forum.l2jdp.com for more details
import sys
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserver.model.quest import QuestState
from com.l2scoria.gameserver.... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/228_TestOfMagus/__init__.py | Python | gpl-3.0 | 11,600 | [
"VisIt"
] | 8e2c6752296981414d60d024ee0b5a3dd4a66deb187058682f9e7afec46bb68e |
# -*- coding: utf-8 -*-
r""" ------------> ------------> ------------> ------------>
______ __ _ ____
/ ____/__ / /__ ____ (_)_ ______ ___ / _ \____ ________
\__ \/ _ \/ / _ \/ __ \/ / / / / __ `__ \/ /_) / __ \/ ___/ _ \
___/ / __/ / __/ / / / / /_/ / / / / / / /_) / ... | seleniumbase/SeleniumBase | seleniumbase/fixtures/base_case.py | Python | mit | 524,441 | [
"VisIt"
] | e3341ed045e8d73c84c0a4295f08b28d8b58fc727b4f61169c21377807d71e7b |
# -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | dnjohnstone/hyperspy | hyperspy/tests/model/test_fancy_indexing.py | Python | gpl-3.0 | 5,715 | [
"Gaussian"
] | 6f40185e327106f6ac4c0238cc961b11773173beb320e0986817d340dac693c9 |
# coding:utf-8
from custor.logger import logger
from db.mysql_model.post import PostCategory, PostTopic, Post
import psutil, datetime, time
# Trick cache
topic_category_cache = {'categorys': [], 'topics': []}
hot_post_cache = {'reply': [], 'visit': []}
system_status_cache = [0, 0, 0, 0]
def update_topic_category_ca... | jmpews/torweb | app/cache.py | Python | mit | 2,751 | [
"VisIt"
] | dbad7ac5ea9b5b143fb871367fdf332d699aa04426daf02473732a27bac62009 |
""" DeadCodeElimination remove useless code. """
from pythran.analyses import PureExpressions, DefUseChains, Ancestors
from pythran.openmp import OMPDirective
from pythran.passmanager import Transformation
import pythran.metadata as metadata
import gast as ast
class ClumsyOpenMPDependencyHandler(ast.NodeVisitor):
... | serge-sans-paille/pythran | pythran/optimizations/dead_code_elimination.py | Python | bsd-3-clause | 4,981 | [
"VisIt"
] | 36ff06dc563ae9c7d201c2c7d1568bee8e1b337c57d79b86de3acc755a8f932b |
# This file is part of the Fluggo Media Library for high-quality
# video and audio processing.
#
# Copyright 2012 Brian J. Crowell <brian@fluggo.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | fluggo/Canvas | fluggo/editor/plugins/_base.py | Python | gpl-3.0 | 17,052 | [
"Brian"
] | 4e6969b7bbe132b16354115065ac4e401f4ff27cdee545ce8c1ca23cee685fd3 |
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
def correlation_categories(data_retina):
""" assign numerical values to stimuli based on correlation category as per variable stim_categories"""
stim_categories = {'white': 3, 'fullfield': 0, 'multiscale': 1, 'spatexp': 2, 'spattempexp': ... | curious-abhinav/change-point | src/features/build_features.py | Python | mit | 8,628 | [
"Brian",
"NEURON"
] | 590c44efceb617d0617282d89d3b0680037870c3542c049c449a1454dc7a8093 |
# Copyright 2019, The TensorFlow Federated Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/federated | tensorflow_federated/python/simulation/datasets/stackoverflow.py | Python | apache-2.0 | 14,910 | [
"VisIt"
] | e36b692c4df4e0ec44ccb2fc42e2dfe104710e199f50d12d0ec0a6ab562c6ea0 |
#!/usr/bin/env python
from multiprocessing import Pool
import time
import os
import sys
import argparse
# Copyright(C) 2015 David Ream
# Released under GPL version 3 licence. http://www.gnu.org/licenses/lgpl.html
# Do not remove this comment
# This exists to make the main function easier to read. It contains code t... | nguyenngochuy91/Ancestral-Blocks-Reconstruction | blast_script.py | Python | gpl-3.0 | 7,346 | [
"BLAST"
] | 58edb7ccc2788081d305e1164445c0e3c33a6e510ecb2f0eba202dfd45a846cc |
from os.path import join
import os
import numpy as n
import glob
import sys
import time
import astropy.io.fits as fits
from os.path import join
import astropy.cosmology as co
cosmo = co.Planck13
import astropy.io.fits as fits
# for one galaxy spectrum
import GalaxySpectrumFIREFLY as gs
import StellarPopulationModel ... | JohanComparat/pySU | spm/bin_deep_surveys/create_summary_table_DEEP2.py | Python | cc0-1.0 | 4,443 | [
"Galaxy"
] | 3dee5f01d26e2e72c3c28b1ed88a083de48faa39a0e6b8b19934a5941bbe6da1 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/gto/test/test_cell.py | Python | apache-2.0 | 13,097 | [
"PySCF"
] | 9ad7678721ee715842235d24151dd3e755b5c44f9f93c13be3b9f7bcc5a34249 |
# (C) British Crown Copyright 2010 - 2017, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | QuLogic/iris | lib/iris/tests/system_test.py | Python | gpl-3.0 | 3,658 | [
"NetCDF"
] | d23ea6591ef5a1c65f489bddba54b8ae7fdd4a99c94d5ca7998c6c4aaba3fb51 |
# Copyright (C) 2016 Henrique Pereira Coutada Miranda
# All rights reserved.
#
# This file is part of yamboparser
#
#
import os
import re
import numpy as np
#we try to use netcdf
try:
from netCDF4 import Dataset
except ImportError:
_has_netcdf = False
else:
_has_netcdf = True
class YamboFile():
"""
... | henriquemiranda/yambopy | yamboparser/yambofile.py | Python | bsd-3-clause | 11,075 | [
"NetCDF",
"Yambo"
] | 8bacba086cb99afd2a45d481223231f5847cd52bbb3f69bd7bf9fe54991b4a48 |
#!/usr/bin/env python
""" Where you at? """
import sys,os
import logging
from collections import OrderedDict as odict
from datetime import datetime,timedelta,tzinfo
import dateutil.parser
import mpl_toolkits.basemap as basemap
from matplotlib.patches import Ellipse, Circle
import matplotlib.patheffects as patheffects
... | kadrlica/pointing | pointing/pointing.py | Python | mit | 29,180 | [
"Galaxy"
] | 57175f7c96750874b1188048bffa941a31462810d6a0a1bdb387015299a3e32d |
"""
Assume the production of Individual instances.
"""
import random
from functools import partial
import neural_world.default as default
from neural_world.commons import NeuronType
from neural_world.individual import Individual
from neural_world.commons import Configurable
from neural_world.neural_network impo... | Aluriak/neural_world | neural_world/incubator.py | Python | gpl-2.0 | 2,689 | [
"NEURON"
] | ced6217cf7f11096bc4aeb602e421038cfb578be7e7f340517826a3ed745a02b |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
The initial version of this module was based on a similar implementation
present in FireWorks (https://pypi.python.org/pypi/FireWorks).
Work done by D. Waroquiers, A. Jain, and M. Kocher.
The main differenc... | aykol/pymatgen | pymatgen/io/abinit/qadapters.py | Python | mit | 79,102 | [
"ABINIT",
"pymatgen"
] | 246ddca62d8ad4cc7a0133a1a6efdea63a4029870eb65dfe63d7175ec37bfa63 |
from __future__ import absolute_import
import ast
class MockAttrVisitor(ast.NodeVisitor):
non_existent_methods = frozenset([
'assert_calls',
'assert_not_called',
'assert_called',
'assert_called_once',
'not_called',
'called_once',
'called_once_with',
])
... | Natim/sentry | src/sentry/lint/mock_check.py | Python | bsd-3-clause | 974 | [
"VisIt"
] | 26abe0c7893d62fb05c0423b126042647407faee9d58a9caf0fb585c401bd43b |
# Copyright (c) 2009 Brian Zimmer <bzimmer@ziclix.com>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in
# the Software without restriction, including without limitation the rights to
# use, copy, modify, m... | bzimmer/openroom | openroom/reports.py | Python | mit | 3,462 | [
"Brian"
] | 97fb665f311e7374ae6e94ce75de8d2bc55d2989f698cf69469d869e9c901c94 |
"""
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | yanlend/scikit-learn | sklearn/tree/tree.py | Python | bsd-3-clause | 37,683 | [
"Brian"
] | 6762bd19d4a7b7aeede5de2d62f6a9ae5591b4d47805c3bc640f318a075cdd50 |
"""
Retrieves dependencies from setup.py file
"""
import ast
from os import path
import pdb
class SetupVisitor(ast.NodeVisitor):
def __init__(self):
self.install_requires_parse_fail = False
self.candidates = {}
self.deps = []
def visit_Assign(self, node):
if len(node.targets)... | sourcegraph/python-deps | setupdep.py | Python | bsd-2-clause | 1,889 | [
"VisIt"
] | 9818a3e6fa53d50547ed54760f1214ad2d4816ee346a98d0f44962d0b286260b |
# Copyright Yair Benita Y.Benita@pharm.uu.nl
# Biopython (http://biopython.org) license applies
"""Simple protein analysis.
Example,
X = ProteinAnalysis("MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTSGLLYGSQTPSEECLFLERLEENHYNTYTSKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPV")
print X.... | asherkhb/coge | bin/last_wrapper/Bio/SeqUtils/ProtParam.py | Python | bsd-2-clause | 10,850 | [
"Biopython"
] | 017e9c872ca30a0fba180b2ab2d4825c28f79eeda24a63c2302c661b4df1902b |
# pylint: disable=C0111
# pylint: disable=W0621
from lettuce import world, step
from nose.tools import assert_true, assert_in, assert_false # pylint: disable=E0611
from auth.authz import get_user_by_email, get_course_groupname_for_role
from django.conf import settings
from selenium.webdriver.common.keys import Keys... | TsinghuaX/edx-platform | cms/djangoapps/contentstore/features/common.py | Python | agpl-3.0 | 12,646 | [
"VisIt"
] | 1bef8bcb82e553570c6366bba5abed987514b892304a392d7e6dbdce45adb587 |
# (c) 2014 Michael DeHaan, <michael@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/playbook/role/requirement.py | Python | bsd-3-clause | 8,216 | [
"Galaxy"
] | 68525aff2569a51b35e83f55006e6e4fa262bcaf25d0e489daf0a6dced584ff6 |
#!/usr/bin/env python
from __future__ import print_function
from __future__ import division
from builtins import str
from builtins import range
from builtins import object
# standard library
# third party
import numpy as np
from scipy.cluster.hierarchy import fcluster, dendrogram
from scipy.spatial.distance import sq... | DessimozLab/treeCl | treeCl/clustering.py | Python | mit | 21,507 | [
"Biopython",
"Gaussian"
] | df0cf6b2cd7ce5be432231fcdf0092c34f4579a657532ec04bba0caa3621c5f0 |
from matplotlib import pyplot as plt
from annotate import annotate_horiz
import psychic
import numpy as np
f = plt.figure(figsize=(10,5))
f.add_axes([0.1, 0.1, 0.5, 0.5])
d = psychic.fake.gaussian(4, 10, 100)
d = psychic.nodes.Butterworth(4, 15, 'lowpass').train_apply(d, d)
psychic.plot_eeg(d, fig=f, vspace=3)
plt.yl... | wmvanvliet/psychic | docs/images/sliding_window.py | Python | bsd-3-clause | 599 | [
"Gaussian"
] | 0304d848ec6b220e18abc9ee9d88cd574b4ca919cad56965505ff791e7f881ca |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
import urllib
from datetime import datetime, timedelta
from textwrap import dedent
import pytz
from nose.plugins.attrib import attr
from common.test.acceptance.fixtures.course import CourseFixture, CourseUpdateDesc, XBlockFixtureDesc
from common.test.accep... | Edraak/edraak-platform | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 45,548 | [
"VisIt"
] | af158026003633f28c7d3b0a5b2dca1d1abdf0ecb464ffbec414958067866961 |
#
# This file is a part of the normalize python library
#
# normalize is free software: you can redistribute it and/or modify
# it under the terms of the MIT License.
#
# normalize is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FI... | samv/normalize | tests/test_record.py | Python | mit | 7,140 | [
"VisIt"
] | a7d71d3a3cbe92201c9f57fe199e72acc5e30b1081bf45488d0b139eb16b1b97 |
# -*- coding: utf-8 -*-
#
# pychemqt documentation build configuration file, created by
# sphinx-quickstart on Wed Jan 13 22:26:06 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# ... | jjgomera/pychemqt | docs/conf.py | Python | gpl-3.0 | 14,259 | [
"Pybel"
] | 720f072e01cc368e3e5674ff64fa6b32850a853a9032452d378fd43997cb9c11 |
""" Class that contains client access to the JobManager handler. """
from DIRAC.Core.Base.Client import Client, createClient
@createClient("WorkloadManagement/JobManager")
class JobManagerClient(Client):
"""JobManagerClient sets url for the JobManagerHandler."""
def __init__(self, url=None, **kwargs):
... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/Client/JobManagerClient.py | Python | gpl-3.0 | 711 | [
"DIRAC"
] | 060f15b35eca7562dda73fefa1f436491d945304a06bf251d04686dab0fdab0d |
###########################################################################
# (C) 2016 Elettra - Sincrotrone Trieste S.C.p.A.. All rights reserved. #
# #
# #
# This file is ... | ElettraSciComp/STP-Core | STP-Core/preprocess/ringremoval/raven.py | Python | gpl-3.0 | 5,407 | [
"Gaussian"
] | 032d6d3f380e357106979f10b927ad6b8269cf18870afe2732d17519b615bde5 |
'''
Created on Nov 21, 2011
@author: Mirna Lerotic, 2nd Look Consulting
http://www.2ndlookconsulting.com/
Copyright (c) 2013, Stefan Vogt, Argonne National Laboratory
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the... | MapsPy/MapsPy | maps_generate_img_dat.py | Python | bsd-2-clause | 88,104 | [
"NetCDF"
] | 7c95bc52392c5a257c1b71ed82ad342d036b7d3e5da973a7bddebecd5f135e98 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | dbtsai/spark | python/pyspark/ml/regression.py | Python | apache-2.0 | 89,077 | [
"Gaussian"
] | 8713d484fe83b5eab74295e2823d5903f0678af6b3e2cd2c0397a5d176626c0d |
import numpy
import os.path
import sys
try:
import vtk
from vtk.util import numpy_support
except:
pass
class VelocityModel:
''' Subsurface model object. Used to read, write and manage model data.
'''
def __init__(self, filename=None, vp=None, subsample=1):
self.filename = filename
... | opesci/inversion | python/VelocityModel.py | Python | bsd-3-clause | 6,993 | [
"VTK"
] | 9ce713d3711fcc734298d5167014a2239c6036635cc5e960addb6063c9eaacff |
# -*- coding:utf-8 -*-
"""
TINY PORT of https://github.com/paularmstrong/normalizr
"""
class Schema(object):
def normalize(self, value, parent, key, schema, addEntity, visit):
assert 0, 'not implemented'
def denormalize(self, inputData, unvisit):
assert 0, 'not implemented'
class ArraySchem... | glucoseinc/naumanni-server | naumanni/normalizr.py | Python | agpl-3.0 | 3,134 | [
"VisIt"
] | c7453a608122e381476cac6735d6a3d60542ac2959d387cc5df3dc9d6c6718f7 |
"""
Given a list of airline tickets represented by pairs of departure and arrival airports [from, to], reconstruct the itinerary in order. All of the tickets belong to a man who departs from JFK. Thus, the itinerary must begin with JFK.
Note:
If there are multiple valid itineraries, you should return the itinerary th... | franklingu/leetcode-solutions | questions/reconstruct-itinerary/Solution.py | Python | mit | 2,419 | [
"VisIt"
] | a825b7dff97a26a1ddeafedf5aca037dfcf32a0717a80ff816c4d50eb7e5dea1 |
# -*- coding: utf-8 -*-
import os
import re
import zipfile
from django import forms
from django.conf import settings
from django.core.cache import cache
from django.core.urlresolvers import reverse
from mock import Mock, patch
from nose.tools import eq_
from mkt.files.helpers import FileViewer, DiffHelper
from mkt.f... | tsl143/zamboni | mkt/files/tests/test_helpers.py | Python | bsd-3-clause | 11,592 | [
"exciting"
] | 2f3c93174703eeab76bbeda06f9fb804e6b07ce3355560353d453cabdf3af5af |
""" This is a test of using SandboxStoreClient in the WMS
In order to run this test we need the following DBs installed:
- SandboxMetadataDB
And the following services should also be on:
- SandboxStore
And a SandboxSE should be configured, something like:
SandboxStore
{
LocalS... | andresailer/DIRAC | tests/Integration/WorkloadManagementSystem/Test_SandboxStoreClient.py | Python | gpl-3.0 | 2,056 | [
"DIRAC"
] | 3a641bb43a31fccf7216ae0f75167a70e9f1ff1a4cc453fe54e8e7e275a86162 |
#!/usr/bin/env python
# Authors: Andrew Jewett (jewett.aij at g mail)
# http://www.chem.ucsb.edu/~sheagroup
# License: 3-clause BSD License (See LICENSE.TXT)
# Copyright (c) 2011, Regents of the University of California
# All rights reserved.
"""
ttree Ttree is a simple program for recursively composing and ... | ganzenmg/lammps_current | tools/moltemplate/src/ttree.py | Python | gpl-2.0 | 221,566 | [
"LAMMPS",
"NAMD",
"VisIt"
] | 8758822ae1d4d595164d04f4e5a35acf32f815ef5f7d17a8a17dd9506a53c1be |
"""Install next gen sequencing analysis tools not currently packaged.
"""
import os
import re
from fabric.api import *
from fabric.contrib.files import *
import yaml
from shared import (_if_not_installed, _make_tmp_dir,
_get_install, _get_install_local, _make_copy, _configure_make,
... | lpantano/cloudbiolinux | cloudbio/custom/bio_nextgen.py | Python | mit | 33,863 | [
"Bowtie"
] | 5ddeb7ceb0d852eaf25eb5725f83221a04d7bd304588ae4d84d5cca1c9c3763e |
#!/usr/bin/env python
# vim: fileencoding=utf-8 et ts=4 sts=4 sw=4 tw=0 fdm=marker fmr=#{,#}
""" A simple asynchronous RPC client that shows how to:
* use specific serializer
* make multiple RPC calls at the same time using the Python threading API
* handle remote exceptions
* do load balancing
"""
#... | srault95/netcall | examples/threading/client_threading.py | Python | bsd-3-clause | 2,637 | [
"Brian"
] | 9c5415d5e0e5a19ba8e38b3a6d97b343234a94c6b9108c435aec3d05e5151b31 |
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import gtk
import os
from zeroinstall.support import tasks
from zeroinstall.gtkui import gtkutils
n_windows = 0
last_error = None
builderfile = os.path.join(os.path.dirname(__file__), 'zero-install.ui')
class Temp... | timdiels/zeroinstall | zeroinstall/0launch-gui/dialog.py | Python | lgpl-2.1 | 1,958 | [
"VisIt"
] | cfdf4fbfa7340747b8808121baf4f87baa4d42fad3edf45e33bf5a80d13cf560 |
# Copyright 2006 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | dbarobin/google-mysql-tools | pylib/trickle_lib.py | Python | apache-2.0 | 9,685 | [
"Brian"
] | 552901fd8afd1d3d7ddb89e466c99ddfe31346c152e1973b4af0dc1a9939b1fc |
#!/usr/bin/env python2
#
# Copyright (C) 2013-2017(H)
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation,... | govarguz/espressopp | testsuite/AdResS/FreeEnergyCompensation/test_FreeEnergyCompensation.py | Python | gpl-3.0 | 6,885 | [
"ESPResSo"
] | 93faf1a09d7512823f14c9d3051f8816870851763c32b4bfd6cbf3953cff3bb4 |
# dagutil.py - dag utilities for mercurial
#
# Copyright 2010 Benoit Boissinot <bboissin@gmail.com>
# and Peter Arrenbrecht <peter@arrenbrecht.ch>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
from node import nullrev
from i18n ... | iaddict/mercurial.rb | vendor/mercurial/mercurial/dagutil.py | Python | mit | 8,237 | [
"VisIt"
] | ad997157fe91254bec6c2d41e855a34f3abc1fe67f8c8972357d058fbb6e2867 |
################################################################################
# #
# Copyright (C) 2010-2018 The ESPResSo project #
# ... | mkuron/espresso | doc/tutorials/06-active_matter/SOLUTIONS/flow_field.py | Python | gpl-3.0 | 4,745 | [
"ESPResSo",
"VTK"
] | 9f652d9677a45d8fde595ca83b94ed2773a6b5b0c16f946444bc7311d9684519 |
# -*- coding: utf-8 -*-
## does summation of echoes using external python script
import sys
import os
import os.path
import subprocess
import JTutils
dataset = CURDATA()
LB = GETPAR("1 LB")
GB = GETPAR("LB")
s = GETPAR("USERP1")
res = INPUT_DIALOG("processing parameters",
"""
please provide :
the gaussian... | jtrebosc/JTutils | TSpy/apod2DEAE.py | Python | bsd-3-clause | 807 | [
"Gaussian"
] | 4765439465a6151e46b921efeda68533e0f6df62a5f7450e1b23fcf44ec95242 |
class Item:
def __init__(self, item_id, item_name):
self.id = item_id
self.name = item_name
class Craftables
def __init__(self):
pass
cord_of_winsome_sorrows = Item(119336, "Cord of Winsome Sorrows")
everburning_candle = Item(118880, "Everburning Candle")
savage_blood = Item(118472, "Savage Blood")
sorcerou... | trigunshin/tsm | items.py | Python | mit | 2,216 | [
"CRYSTAL"
] | efd326320dc4b3ee9aa470da62c1080552346e59bd8ff32e19805b12f4e6a4cb |
# (C) British Crown Copyright 2017 - 2018, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | dkillick/iris | lib/iris/_lazy_data.py | Python | lgpl-3.0 | 8,548 | [
"NetCDF"
] | 08206cb51c74f1bdc1a275158c8d08f24401ae4058e3e432fd1526b6d5c3d56f |
# coding: utf-8
from __future__ import unicode_literals
import re
import time
import xml.etree.ElementTree as etree
from .common import InfoExtractor
from ..compat import compat_urlparse
from ..utils import (
unescapeHTML,
urlencode_postdata,
unified_timestamp,
ExtractorError,
)
MSO_INFO = {
'DT... | Tithen-Firion/youtube-dl | youtube_dl/extractor/adobepass.py | Python | unlicense | 39,507 | [
"COLUMBUS",
"Elk"
] | 2e8110971d89cb19d1094a8cb4e2c48fa8dec40f1231d944943927b35ec50c93 |
# -*- coding: utf-8 -*-
#
# Instant Press. Instant sites. CMS developed in Web2py Framework
# Site: http://www.instant2press.com
#
# Copyright (c) 2010 Mulone, Pablo Martín
#
# License Code: GPL, General Public License v. 2.0
# License Content: Creative Commons Attribution 3.0
#
# Also visit: www.web2py.com
# ... | LispyAriaro/instant-press | modules/users.py | Python | gpl-2.0 | 31,385 | [
"VisIt"
] | 5ee8253d5e78460e19de767f7aadd2e13940a2f78e78d47b6941b5f78b611286 |
"""Tests for the DIRAC.Core.Utilities.Extensions module"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import DIRAC
from DIRAC.Core.Utilities.Extensions import (
findSystems,
findAgents,
findExecutors,
findServices,
findDatabases,
... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/test/Test_Extensions.py | Python | gpl-3.0 | 1,162 | [
"DIRAC"
] | d2422777a5f7ee976c522902db5ca6ecb61f4eb33591eb763b73564ede0834bb |
# procedure for existing halos, after the first snapshot was initiated :
import sys
# only input parameter is the numbering of the snapshot. These have to be
#processed in sequence, cannot be done in parallel ... First 1, 2, 3, ...
#ii = int(sys.argv[1])
#print('snapshot' ii)
import time
t0 = time.time()
from multipr... | JohanComparat/pyEmerge | python/EmergeIterate.py | Python | unlicense | 30,464 | [
"Galaxy"
] | ebf6aa686327d97aa3ac07a2026fcf0f13d9c5137ff3a3003d34feb58fdfce45 |
#
# @file TestListOf.py
# @brief ListOf unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file located at
# src... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/sbml/TestListOf.py | Python | bsd-3-clause | 4,604 | [
"VisIt"
] | 2275fd04f1613877f1c3f0e87e947b7c52088511e1a2b39f50cae4a5815ac2dc |
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under t... | briancurtin/python-openstacksdk | openstack/tests/unit/test_resource2.py | Python | apache-2.0 | 49,714 | [
"Brian"
] | 2e3fa91e444a7ed301e8e0434c95f72470a59987ed6afd46113efe38df130379 |
# Copyright (c) 2012 Google Inc. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
from compiler.ast import Const
from compiler.ast import Dict
from compiler.ast import Discard
from compiler.ast import List
from compiler.ast import Module
from co... | cloudpbl-senrigan/combinator | tools/gyp/pylib/gyp/input.py | Python | mit | 113,529 | [
"VisIt"
] | 8f4a86f75bd4dcd7d56e9cdf0a71a3c2cee6cda0f8b6511d5d5f2edc2d61aacf |
# -*- coding: utf-8 -*-
################################################################################
###
### ReadLAMMPSdatafile
###
################################################################################
import numpy as np
def get_box(filename):
"""Return the box edges and volume from a LAMMPS Da... | lorisercole/thermocepstrum | sportran/i_o/read_lammps_datafile.py | Python | gpl-3.0 | 864 | [
"LAMMPS"
] | f52777ae7555d5f00fe89b8327d8e8e8bc5769c1a94fbcc2aebbaaa13b7df265 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageAnisotropicDiffusion3D(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | nagyistoce/devide | modules/vtk_basic/vtkImageAnisotropicDiffusion3D.py | Python | bsd-3-clause | 517 | [
"VTK"
] | 0fecf7e9016f955a8842bfb374e1dc09c212b7bb9cd2e02ebba832711d18f687 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | tests/runtest.py | Python | gpl-2.0 | 5,050 | [
"Psi4"
] | 632f4856d6198123141ac97391388b0bbd9178d9c177654af4b98f158bed90a6 |
"""
This module contains deprecation messages and bits of code used elsewhere in the codebase
that is planned to be removed in the next pytest release.
Keeping it in a central location makes it easy to track what is deprecated and should
be removed when the time comes.
All constants defined in this module should be e... | lmregus/Portfolio | python/design_patterns/env/lib/python3.7/site-packages/_pytest/deprecated.py | Python | mit | 4,095 | [
"VisIt"
] | 3b97ae5b10ed5f4b28122fc67a2f0c08cada27bd5f325523b76b190a2f89bfaa |
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