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#! /usr/bin/env python
from __future__ import print_function # python3-style print
from flask import Flask, render_template, request
import examples.e0 as e0
import examples.e1 as e1
import examples.e2 as e2
import examples.e3 as e3
import examples.e4 as e4
import examples.e5 as e5
import examples.e6 as e6
impor... | grubbcode/minplot | application.py | Python | mit | 7,912 | [
"VisIt"
] | 39c7fb6f75c5675039ff20198e9c54b274a7bd6bd1c1b0546f4d58bbb7be6c0d |
from __future__ import division
from iotbx.pdb.multimer_reconstruction import multimer
from scitbx.array_family import flex
from libtbx import group_args
import mmtbx.f_model
import scitbx.lbfgs
from iotbx import pdb
from cctbx import xray
import sys,os
class minimizer(object):
def __init__(self,
fmodel,
... | youdar/work | work/NCS/refinement_strict_ncs.py | Python | mit | 6,121 | [
"CRYSTAL"
] | 6515ea602431d95eaa54770d5509f0634fba77be092f4e8ed1defdcecbe40a91 |
__author__ = "Just van den Broecke"
__date__ = "Dec 21, 2011 3:46:27 PM$"
"""
Naam: BAGObject.py
Omschrijving: Classes voor BAG-objecten
Per BAG-objecttype (woonplaats, openbareruimte, nummeraanduiding,
ligplaats, standplaats, verblijfsobject, pand) is er een aparte class.
De BAGObject classes zijn pure ... | opengeogroep/NLExtract | bag/src/bagobject.py | Python | gpl-3.0 | 30,138 | [
"Elk"
] | 73c41f5726b500a36eff20dfa99ddf4c721ca4cbb325d5c36640eb46d4a61292 |
"""Creates a 2D hyperspectrum consisting of two gaussians and plots it.
This example can serve as starting point to test other functionalities on the
simulated hyperspectrum.
"""
# Create an empty spectrum
s = signals.Spectrum(np.zeros((32, 32, 1024)))
# Generate some simple data: two Gaussians with random centers... | sillvan/hyperspy | examples/simple_simulations/two_gaussians.py | Python | gpl-3.0 | 1,406 | [
"Gaussian"
] | 7bb63bcea112750faf640eac4cb45b7c93d18917f23fdd0aece92e896bb22f67 |
"""
ReportCLI class implementing command line interface to DIRAC Accounting
ReportGenerator Service. It is not complete yet
"""
from __future__ import print_function
__RCSID__ = "$Id$"
import sys
import datetime
from DIRAC.Core.Base.CLI import CLI, colorize
from DIRAC.Core.Utilities import ExitCallback
from DIRAC.Ac... | petricm/DIRAC | AccountingSystem/Client/ReportCLI.py | Python | gpl-3.0 | 2,081 | [
"DIRAC"
] | a053dd9ddf3090d1e9bf7d440d33ea56fd50073be0eb1e83f51443d4c6efd574 |
from math import pi
from time import sleep
from euclid import Vector2
from imutils.video import VideoStream
from approxeng.holochassis.chassis import Motion
from approxeng.picamera import find_lines
from approxeng.viridia import IntervalCheck
from approxeng.viridia.task import Task
class LineFollowerTask(Task):
... | ApproxEng/viridia | src/python/approxeng/viridia/tasks/camera.py | Python | apache-2.0 | 7,092 | [
"Gaussian"
] | e1f1c255ccbb5e2b85f1da9ababf04ee3694b39f2e4befc0ee3944848916a615 |
import sys
import antlr
class Visitor(antlr.ASTVisitor):
def __init__(self,*args):
super(Visitor,self).__init__(*args)
self.level = 0
if not args:
self.cout = sys.stdout
return
if isinstance(args[0],file):
self.cout = args[0]
return
assert 0
... | rmartinho/boo | lib/antlr-2.7.5/examples/python/heteroAST/hetero.py | Python | bsd-3-clause | 3,610 | [
"VisIt"
] | ef902228eace828d73dd43b85050bbf2cec10370270b63904c0c3b595681ce45 |
##########################################################################
# this script was generated by openmm-builder. to customize it further,
# you can save the file to disk and edit it with your favorite editor.
##########################################################################
from __future__ import pri... | machristie/airavata | sandbox/simstream/example/openmm_example/application/alanine_dipeptide.py | Python | apache-2.0 | 1,902 | [
"OpenMM"
] | 4cf54bdfb1442fce23813f4e3461e96ef0560c7b439837b3b7d8db34aa5d7502 |
from __future__ import absolute_import
from __future__ import print_function
import six
# {{{ logic that preserves NotImplemented
def not_ni(a):
if a == NotImplemented:
return NotImplemented
else:
return not a
def and_ni(a, b):
if a == NotImplemented or b == NotImplemented:
retu... | inducer/synoptic | synoptic/query.py | Python | mit | 15,386 | [
"VisIt"
] | 5117a09965247d1607db36b5450322fdb888fde7713119076a4afa1616e42252 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the Account Settings page.
"""
from unittest import skip
from nose.plugins.attrib import attr
from bok_choy.web_app_test import WebAppTest
from bok_choy.page_object import XSS_INJECTION
from ...pages.lms.account_settings import AccountSettingsPage
from ...pages.lms.aut... | waheedahmed/edx-platform | common/test/acceptance/tests/lms/test_account_settings.py | Python | agpl-3.0 | 18,554 | [
"VisIt"
] | 1ad4d64495e0118b0e96b9de58d9c34cea2f4ec127d20dc1a86d82df8124ecc2 |
#!/usr/bin/python
# -*- coding: utf8 -*-
"""
wget http://people.duke.edu/~ccc14/pcfb/_downloads/ls_orchid.fasta
wget ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.dat.gz
"""
from Bio import Entrez
from Bio import Medline
from Bio import SeqIO
from Bio.Alphabet import IUPAC
... | quchunguang/test | testpy/testbiopython.py | Python | mit | 9,390 | [
"Biopython"
] | f695bce8835966d9f4be37111bace1ff12f2414cce331490a9d5dbbb510544aa |
from direct.directnotify import DirectNotifyGlobal
from direct.fsm import StateData
import CogHQLoader
from toontown.toonbase import ToontownGlobals
from direct.gui import DirectGui
from toontown.toonbase import TTLocalizer
from toontown.toon import Toon
from direct.fsm import State
from toontown.coghq import BossbotHQ... | silly-wacky-3-town-toon/SOURCE-COD | toontown/coghq/BossbotCogHQLoader.py | Python | apache-2.0 | 6,920 | [
"VisIt"
] | 5b19d962c28ffbaaf7ab23894c617c1562dda60a79926c2bc55d35a611b0bd48 |
import re
import pytz
import datetime as dt
from collections import defaultdict
import lxml.html
from openstates.scrape import Scraper, Bill, VoteEvent
from utils import LXMLMixin
from .utils import clean_text, house_get_actor_from_action, senate_get_actor_from_action
bill_types = {
"HB ": "bill",
"HJR": "j... | hiteshgarg14/openstates | scrapers/mo/bills.py | Python | gpl-3.0 | 26,867 | [
"VisIt"
] | 7632fe8292a037ce06615a6ebe12dc13c4aaf020d3fb75d21e84c08c896dceb6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import json
import click
import datetime
from os import path
from lib.common.config import DATA_DIR
from lib.common.utils import Echo as echo
from lib.services.api import KcwikiApi as Api
from lib.services.subtitle import SubtitleService, EnglishSubtitleParser
@click.grou... | kcwikizh/kcwiki-scripts | lib/commands/update.py | Python | mit | 2,098 | [
"MOE"
] | 001161cceb036e64f3d03f26d6208963254a5f4c7e65d5ea4eba26c60d131f7f |
#
# Copyright (C) 2013,2014,2015,2016 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option)... | KonradBreitsprecher/espresso | testsuite/interactions_bond_angle.py | Python | gpl-3.0 | 3,560 | [
"ESPResSo"
] | 8832786c2ba4355d1f4a4b67ce90cb2f9474e5c21b7095706f4534333c8c5b9b |
# -*- coding: UTF-8 -*-
#
# Copyright (c) 2008, Yung-Yu Chen <yyc@solvcon.net>
#
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# - Redistributions of source code must retain the above copyrigh... | yungyuc/solvcon | solvcon/io/__init__.py | Python | bsd-3-clause | 1,782 | [
"NetCDF",
"VTK"
] | 73fc499e5f9a4225423b2d6691993bea12309c755fe1ede446e9a1150d377065 |
# -*- coding: UTF-8 -*-
#
# Copyright (c) 2008, Yung-Yu Chen <yyc@solvcon.net>
#
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# - Redistributions of source code must retain the above copyrigh... | yungyuc/solvcon | solvcon/solver_legacy.py | Python | bsd-3-clause | 24,796 | [
"VTK"
] | 9a851408d9d51b079694026af15513bcdd01c5d3648bb041100609187e2f6118 |
from __future__ import print_function
import unittest
import os
import io
from rdkit.six.moves import cPickle as pickle
from rdkit import Chem
from rdkit.Chem import rdPartialCharges
from rdkit import RDConfig
def feq(v1,v2,tol2=1e-4):
return abs(v1-v2)<=tol2
class TestCase(unittest.TestCase):
def setUp(sel... | adalke/rdkit | Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py | Python | bsd-3-clause | 4,705 | [
"RDKit"
] | c069257a47f57f6700874caf26762c6b9bd2c35fe0b00cdfeb7024a5233e6e9d |
'''
=========================================
Inference for Non-Linear Gaussian Systems
=========================================
This module contains the Unscented Kalman Filter (Wan, van der Merwe 2000)
for state estimation in systems with non-Gaussian noise and non-linear dynamics
'''
from collections import namedt... | PierrotLC/pykalman | pykalman/unscented.py | Python | bsd-3-clause | 51,819 | [
"Gaussian"
] | fb77e2f377674defb77771246ef174c386c64382df3fd87b5459aec6d9266e85 |
#!/usr/bin/env python
########################################
#Globale Karte fuer tests
# from Rabea Amther
########################################
# http://gfesuite.noaa.gov/developer/netCDFPythonInterface.html
import os
import netCDF4
import pylab as pl
import numpy as np
import matplotlib as mpl
from netCDF4 imp... | CopyChat/Plotting | Python/ssr_summary.meteofrance.py | Python | gpl-3.0 | 3,351 | [
"NetCDF"
] | 581c0d70325067ba26a6508ba5d0000c073707caa607965fedcbbccf91e2ecf9 |
from sympy import (meijerg, I, S, integrate, Integral, oo, gamma, cosh, sinc,
hyperexpand, exp, simplify, sqrt, pi, erf, erfc, sin, cos,
exp_polar, polygamma, hyper, log, expand_func)
from sympy.integrals.meijerint import (_rewrite_single, _rewrite1,
meijerint_indefinite, _... | NikNitro/Python-iBeacon-Scan | sympy/integrals/tests/test_meijerint.py | Python | gpl-3.0 | 28,412 | [
"Gaussian"
] | 9bc663a17fbec2d7d126643c53f78314e37f1d01ab427b3544573b88d00e2b25 |
"""
Acceptance tests for studio related to the outline page.
"""
import json
from datetime import datetime, timedelta
import itertools
from pytz import UTC
from bok_choy.promise import EmptyPromise
from nose.plugins.attrib import attr
from ...pages.studio.settings_advanced import AdvancedSettingsPage
from ...pages.stu... | simbs/edx-platform | common/test/acceptance/tests/studio/test_studio_outline.py | Python | agpl-3.0 | 81,777 | [
"VisIt"
] | 46f1db0da32edcd0f120df29c91840299f8e5a5e3846ac5b44fde205b38efeae |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
#
# fractal.py
#
# A script who display a fractal based on a tuple.
#
# This program is free software licensed under the Creative Commons
# Attribution-NonCommercial-ShareAlike 3.0 France License.
# To view a copy of this license, visit
# http://creativecommo... | Meier-Link/fractaliser | fractaliser.py | Python | unlicense | 5,370 | [
"VisIt"
] | 2a12a5e2b7421cf869c72a7ba324c86b9472ba5c28867c6190079f728ec1c8c2 |
# -*- coding: utf-8 -*-
def do_hello():
print(u"ciao RASPA !")
tot = 1 + 1
print(tot)
def fib_from_string(x):
s = "0112358"
if x < 0 or x > 6:
raise ValueError("Valore non ammesso {}".format(x))
else:
return int(s[x])
def fib_from_list(x):
l = [0,1,1,2,3,5,8]
if x... | feroda/lessons-python4beginners | students/2016-09-04/raspa77/fibonacci.py | Python | agpl-3.0 | 1,129 | [
"RASPA"
] | 27eb4b893cf99e150a881699d0e434a0ec2c96aae416c4bb292b64fa68814a7c |
# -*- coding: utf-8 -*-
##############################################################################
# Filename: libExtractStar.py
# Version: $Revision$
# Description: Extract_star utilities module
# Modified at: $Date$
# Author: $Author$
# $Id$
##################################################... | snfactory/extract-star | extract_star/libExtractStar.py | Python | mit | 75,122 | [
"Gaussian"
] | 68ee06ddc75c1f2a6b820cc2d44f7350aace63fedd2d8657635d5b1bfcc99d31 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2009 Gary Burton
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2020 Jan Sparreboom
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU G... | gramps-project/addons-source | ToDoReport/TodoReport.py | Python | gpl-2.0 | 22,009 | [
"Brian"
] | 1885bb73e85b2a595dc50abcab4e57c151c9bc487c644e02e98bfc1971242bfd |
#!/usr/bin/env python
# encoding: utf-8
# ======================================================================
# Package: pyclaw.io
# File: __init__.py
# Created: Feb 10, 2008
# Author: Kyle Mandli
# ======================================================================
"""Output package for... | clawpack/clawpack-4.x | python/pyclaw/io/__init__.py | Python | bsd-3-clause | 1,375 | [
"NetCDF"
] | 700c56a24afcde795b6cfcd08ccbadb7e2f16c14c1e9d8cdb3cec604639eb267 |
"""
# Copyright Nick Cheng, Brian Harrington, Danny Heap, Venkat Korapaty,
# 2013, 2014, 2015
# Distributed under the terms of the GNU General Public License.
#
# This file is part of Assignment 2, CSCA48, Winter 2015
#
# This is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gener... | venkatkorapaty/Regex | regex_functions.py | Python | gpl-2.0 | 12,678 | [
"Brian"
] | 776134c43a9cf782f8c219f9199fd8f2bfd996a804f7f0d6d668a03e4dd2a704 |
import pytest
from capybara.exceptions import ExpectationNotMet
@pytest.mark.requires("css")
class TestAssertStyle:
def test_is_true_if_the_elements_style_contains_the_given_properties(self, session):
session.visit("/with_html")
assert session.find("css", "#first").assert_style({"display": "block... | elliterate/capybara.py | capybara/tests/session/test_assert_style.py | Python | mit | 1,035 | [
"VisIt"
] | 97af117c499d6fb7c416c85522e7a24b615bb66e7bab4dcba77c5e08fadbb640 |
#!/usr/bin/env python
from __future__ import division
__author__ = "Jai Ram Rideout"
__copyright__ = "Copyright 2012, The QIIME project"
__credits__ = ["Jai Ram Rideout"]
__license__ = "GPL"
__version__ = "1.8.0-dev"
__maintainer__ = "Jai Ram Rideout"
__email__ = "jai.rideout@gmail.com"
from os.path import split
from... | wasade/qiime | qiime/parallel/identify_chimeric_seqs.py | Python | gpl-2.0 | 9,174 | [
"BLAST"
] | 20febf13053b39960b465b7329b633cb9bcac5bec1162d6b634ba10d95de801d |
"""
Functional tests
~~~~~~~~~~~~~~~~
A functional test suite for running through the key actions in the admin UI.
Note that the best way to run this is by running ``make functional-test`` from
the project's root directory. If run directly (e.g., via ``nosetests
example``, the example app should already be running in ... | kadams54/switchboard | example/tests.py | Python | apache-2.0 | 7,503 | [
"VisIt"
] | 832412f3f710e1e7147fe6d7fe3457f9d2f13eae7398930192e764bbdabd3340 |
from toee import *
from utilities import *
from combat_standard_routines import *
def san_dialog( attachee, triggerer ):
game.global_flags[70] = 1
if (attachee.leader_get() != OBJ_HANDLE_NULL):
triggerer.begin_dialog( attachee, 350 ) ## otis in party
elif (game.global_vars[903] == 32 and attachee.map != 5051 a... | GrognardsFromHell/TemplePlus | tpdatasrc/co8fixes/scr/py00097otis.py | Python | mit | 8,857 | [
"Amber"
] | aea5d95d26c280a01a87027956e287a8c7a0f930dfe5cd60dddb5461fd1022ce |
"""A grid plane component.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2005-2006, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance, Enum, Int, Range
from traitsui.api import View, Group, Item
from tvtk.api import tvtk
from apptools.persis... | liulion/mayavi | mayavi/components/grid_plane.py | Python | bsd-3-clause | 6,556 | [
"Mayavi"
] | 8eecbb26a55a3416fb01ee8f1c06a23da012f9eec068cb767b2ae3dd4784e20f |
# coding: utf-8
from __future__ import unicode_literals
import unittest
import os
import numpy as np
import shutil
from pymatgen.io.vaspio_set import MITVaspInputSet, MITHSEVaspInputSet, \
MPVaspInputSet, MITGGAVaspInputSet, MITNEBVaspInputSet,\
MPStaticVaspInputSet, MPNonSCFVaspInputSet, MITMDVaspInputSet,\... | Dioptas/pymatgen | pymatgen/io/tests/test_vaspio_set.py | Python | mit | 16,493 | [
"pymatgen"
] | 9ca90a755e867ebae8c4b4336629e62ef19f0b7227d10720031ba4b371fea60d |
#!flask/bin/python
from app import app, models, db
from flask.ext.sqlalchemy import SQLAlchemy
import datetime
import os, json
from app.models import User
from app.models import Visits
from app.models import Beacon
import random
beacon1 = Beacon(beacon_identifier="Fake1", location="Google X Labs", picture='/static/ima... | SohKai/ChronoLogger | web/db_populate.py | Python | mit | 7,015 | [
"VisIt"
] | b66d4e84b217f12de7da6d05a94628d811ab7954f7d5598368e21b811dc5fba8 |
# -*- coding: utf-8 -*-
"""
Tests for bandwidth selection and calculation.
Author: Padarn Wilson
"""
import numpy as np
from scipy import stats
from statsmodels.sandbox.nonparametric import kernels
from statsmodels.distributions.mixture_rvs import mixture_rvs
from statsmodels.nonparametric.bandwidths import select_... | statsmodels/statsmodels | statsmodels/nonparametric/tests/test_bandwidths.py | Python | bsd-3-clause | 2,495 | [
"Gaussian"
] | f4fbd3c7a0346c20662fc3d13dfe98661f23bb0ff03f050b87c7835310933654 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Converts query results from SpaceCurve System into strict GeoJSON.
#
# for Python 2.7
#
#
# For help:
#
# python sc-to-geojson.py --help
#
# and visit: https://github.com/SpaceCurve/schema-discovery
#
# @copyright (C) SpaceCurve, Inc. 2015
import os
import re
import sys
im... | SpaceCurve/schema-discovery | sc-to-geojson.py | Python | apache-2.0 | 1,373 | [
"VisIt"
] | d06bed7586eacddfaf5f7109c99e5a2fb256bf03c5c47fdd82342939faf448cc |
# -*- coding: utf-8 -*-
"""
Created on Thu Jan 07 11:09:10 2016
@author: Radu
"""
from neuron import h
from math import sin, cos
class BallAndStick(object):
"""Two-section cell: A soma with active channels and
a dendrite with passive properties."""
def __init__(self):
self.x = self.y = self.z = 0... | penguinscontrol/Spinal-Cord-Modeling | ClarkesNetwork/ballandstick_passive.py | Python | gpl-2.0 | 4,811 | [
"NEURON"
] | 4a61baafae40e72944278c713082f5e8cd18eef2d0cb64cc1b16a95eadf2a4ae |
from math import *
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
# 20cm translation distance
dx=0.2
dy=0.35
trans = sqrt(dx*dx + dy*dy)
# rotation1 = 30 degree
theta1 = 30.0*pi/180.0
# rotation2 = 45 degree
theta2 = 10.0*pi/180.0
rot1 = atan2(dy, dx) - theta1
rot2 = theta2-theta1-rot1
a1 = 0.05... | CARMinesDouai/MultiRobotExplorationPackages | noisy_odometry/scripts/view_distribution.py | Python | mit | 933 | [
"Gaussian"
] | aaaf3c0a91fd1609f18523f83f64c7ccd5e88f8bc9462f95181c30022bc5b225 |
#!/usr/bin/env python
# The glassbrain class copied from The NeuroImaging Analysis Framework (NAF) repositories
# The code is covered under GNU GPL v2.
# Usage example.
'''
brain = ConnecBrain("fsaverage", "lh", "inflated")
coords = np.array([[-27., 23., 48.],
[-41.,-60., 29.],
[-64., -20., -9.],
... | fboers/jumeg | jumeg/glassbrain.py | Python | bsd-3-clause | 8,626 | [
"Mayavi"
] | 8e21e8e4c09b096f35392644d798a2b4472c0bf049665e616343f7d9c67278e1 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | SamStudio8/scikit-bio | skbio/sequence/_sequence.py | Python | bsd-3-clause | 78,197 | [
"scikit-bio"
] | aee386de63e7fe9f7e3635462eef48e6c494d0b2eeaab1b87662c6337ba6cd92 |
"""The data models used in ARL:
.. note::
There are two visibility formats:
:class:`BlockVisibility` is conceived as an ingest and calibration format. The visibility
data are kept in a block of shape (number antennas, number antennas, number channels,
number polarisation). One block is kept per integr... | SKA-ScienceDataProcessor/algorithm-reference-library | data_models/memory_data_models.py | Python | apache-2.0 | 35,339 | [
"Gaussian"
] | a1b25c8edfafd76f3573353645a6e5b902c9c0e0ebc60317b095289d06adfc97 |
import pytest
import numpy as np
from math import floor
from conftest import opts_tiling
from devito import (Grid, Function, TimeFunction, Eq, solve, Operator, SubDomain,
SubDomainSet, Dimension)
from devito.ir import FindNodes, Expression
from devito.tools import timed_region
class TestSubdomain... | opesci/devito | tests/test_subdomains.py | Python | mit | 14,942 | [
"VisIt"
] | 77ce1574c699b199c1d6cae89112d13250af34c806a670284b5bcb06ca1db6d9 |
# Author: Suyog Dutt Jain <suyog.jain@aero.iitb.ac.in>
# Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2008-2015, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
from os.path import abspath
from io import BytesIO
import copy
import unittest
import numpy
# Enthought library im... | dmsurti/mayavi | mayavi/tests/test_vtk_xml_reader.py | Python | bsd-3-clause | 4,728 | [
"Mayavi",
"VTK"
] | 2de86b7f5cf0ac41873192016dac02c4738dd74b8d53a729bb1459125e44615e |
'''
Useful for:
* users learning xray
* building tutorials in the documentation.
'''
import os as _os
from .backends.api import open_dataset as _open_dataset
from .core.pycompat import urlretrieve as _urlretrieve
_default_cache_dir = _os.sep.join(('~', '.xray_tutorial_data'))
# idea borrowed from Seaborn
def lo... | petercable/xray | xray/tutorial.py | Python | apache-2.0 | 1,638 | [
"NetCDF"
] | d9ed929161180e5a3c203bc5b82b51fee0e3b39e9eb2f0a82895ca043ce4cbba |
import unittest
from mjhmc.samplers.algebraic_hmc import (StateGroup, AlgebraicDiscrete,
AlgebraicContinuous, AlgebraicReducedFlip,
AlgebraicHMC)
import itertools
import numpy as np
from mjhmc.misc.utils import overrides
n_seed = 1
# error toleran... | rueberger/MJHMC | mjhmc/tests/test_algebraic_samplers.py | Python | gpl-2.0 | 4,765 | [
"Gaussian"
] | 717a1e12960bdc11ccc9033864653ca7f8936ed7d933b01433a2cd6218a1e47d |
"""
This module contain solvers for all kinds of equations:
- algebraic or transcendental, use solve()
- recurrence, use rsolve()
- differential, use dsolve()
- nonlinear (numerically), use nsolve()
(you will need a good starting point)
"""
from __future__ import print_function, division
f... | sahilshekhawat/sympy | sympy/solvers/solvers.py | Python | bsd-3-clause | 120,569 | [
"Gaussian"
] | 5b6a2a982acd6e2258d22ac88b4acb69cd238e6dfe600a960e62a6daed27a86a |
import os
try:
HOME = os.environ['HOME']
except KeyError:
raise Exception("Please add an HOME environment variable corresponding\
to the location of the user's home directory.")
try:
NC_HOME = os.environ['NC_HOME']
except KeyError:
raise Exception("Please add an NC_HOME environment vari... | rgerkin/neuroConstruct | pythonnC/utils/constants.py | Python | gpl-2.0 | 1,335 | [
"NEURON"
] | 14c2b8a416f1fc4c516316b50f9b9f9a45fe43078f71e942950ec5e12374cc95 |
#!/usr/bin/env python
# -*- coding: ascii -*-
"""signal_processing.py - a class for signal processing"""
import numpy as np
import datetime
import settings
import serial_interface
from defines import *
class SignalProcessor:
"""This class provides the essential signal processing algorithms"""
def __init__(... | nspi/vbcg | src/signal_processing.py | Python | gpl-3.0 | 10,773 | [
"Gaussian"
] | 718cffdc2f5b78fff938882f5ea3bb1ee7d577780f6d6bb81d556544d5608484 |
import sys
from netCDF4 import Dataset
def main():
copy_gridded_ioapi_to_empty(sys.argv[1], sys.argv[2])
def copy_gridded_ioapi_to_empty(input_path, output_path):
'''Copy a GRIDDED IOAPI NetCDF file (NETCDF3_CLASSIC)
to an empty NetCDF file that has the same structure,
but the variables are empty o... | theJollySin/python_for_scientists | classes/14_netcdf/make_gridded_ioapi_template.py | Python | gpl-3.0 | 1,964 | [
"NetCDF"
] | 19b7e7a856bdc1b98f1d164cb585e0cf2f0e146032b5c946e56fbc67544ba373 |
# !/usr/local/bin/python3.4.2
# ----Copyright (c) 2017 Carnegie Hall | The MIT License (MIT)----
# ----For the full license terms, please visit https://github.com/CarnegieHall/quality-control/blob/master/LICENSE----
# run script with 3 or more arguments:
# argument 0 is the script name
# argument 1 is the path to the L... | CarnegieHall/quality-control | matchvaluesfromlists_2.py | Python | mit | 1,680 | [
"VisIt"
] | a3cc8fa13b52eccf394b90b222849b8b50446ed23240594556263f412d007314 |
#!/usr/bin/env python
"""
Converts an atom selection string from psf/resid to corresponding
AMBER residues
Author: Robin Betz
Copyright (C) 2015 Robin Betz
This program is free software; you can redistribute it and/or modify it under
the terms of the GNU Lesser General Public License as published by the Free
Softwar... | Eigenstate/dabble | get_restraint_mask.py | Python | gpl-2.0 | 4,191 | [
"Amber",
"VMD"
] | bc8fdd9156844d2309647be978e5913219d6ee70ce1655f1090ca1763683ba2f |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2012 Async Open Source
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU Lesser General Public License
## as published by the Free Software Foundation; either version 2
## of the Licens... | tiagocardosos/stoq | stoqlib/gui/editors/baseeditor.py | Python | gpl-2.0 | 24,863 | [
"VisIt"
] | d235ce649b93ced0af96ccdd9682ef227893f30a00df03ae23d25e04334c6492 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Makes sure files have the right permissions.
Some developers have broken SCM configurations that flip the executable
permission... | ric2b/Vivaldi-browser | chromium/tools/checkperms/checkperms.py | Python | bsd-3-clause | 14,907 | [
"xTB"
] | fc7abe75c672f15dece7e7ae4c4729aaf297551d9fc3c7389dbad9d39d8f167c |
#!/usr/bin/env python
"""
Script converts the user certificate in the p12 format into a standard .globus usercert.pem and userkey.pem files.
Creates the necessary directory, $HOME/.globus, if needed. Backs-up old pem files if any are found.
"""
import os
import sys
import shutil
from datetime import datetime
from DIRA... | DIRACGrid/DIRAC | src/DIRAC/Core/scripts/dirac_cert_convert.py | Python | gpl-3.0 | 2,285 | [
"DIRAC"
] | 56a17d30e0af4975fb325097035458d96550ffbec88d1192408af485392c0b96 |
"""
Functions to operate on polynomials.
"""
from __future__ import division, absolute_import, print_function
__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
'polyfit', 'RankWarning']
import re
import warnings
import numpy.core.... | Eric89GXL/numpy | numpy/lib/polynomial.py | Python | bsd-3-clause | 38,469 | [
"Gaussian"
] | 44ac9e359158cfe72ccd8c8c57d0bbee679f646fcb056d2aa042b29a2d8679b7 |
"""
Views for the verification flow
"""
import decimal
import json
import logging
import urllib
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.staticfiles.storage import staticfiles_storage
from django.db import transaction
from django.http import Http40... | arbrandes/edx-platform | lms/djangoapps/verify_student/views.py | Python | agpl-3.0 | 53,468 | [
"VisIt"
] | 115813f6acdc9d009cc02534e011631bf22ae714338d01692eae8e51123a0f49 |
__author__ = "Xiang-Guo Li"
__copyright__ = "Copyright 2018, The Materials Virtual Lab"
__email__ = "xil110@eng.ucsd.edu"
__date__ = "07/30/18"
import os
import unittest
import warnings
import numpy as np
from pymatgen.analysis.gb.grain import GrainBoundary, GrainBoundaryGenerator
from pymatgen.core.structure import... | materialsproject/pymatgen | pymatgen/analysis/gb/tests/test_grain.py | Python | mit | 16,955 | [
"pymatgen"
] | c64abea1d536f1c82ae65690fa7c2f3c165f9a390e81b5cf9d5155acd7faeccf |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-workflows | tests/unit/gapic/workflows_v1/test_workflows.py | Python | apache-2.0 | 94,924 | [
"Octopus"
] | 6373d93214c179e0cf0da444b8082c3c744ff029a6d9e136793ce02ef85d0d69 |
# $HeadURL $
''' ResourceStatusHandler
Module that allows users to access the ResourceStatusDB remotely.
'''
from DIRAC import gLogger, S_OK
from DIRAC.Core.DISET.RequestHandler import RequestHandler
from DIRAC.ResourceStatusSystem.DB.ResourceStatusDB... | avedaee/DIRAC | ResourceStatusSystem/Service/ResourceStatusHandler.py | Python | gpl-3.0 | 7,929 | [
"DIRAC"
] | 7f2ba0b8346b25733ddb1732be14ae7126eed19d81d2274ee3e0a8102cc0273c |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/tools/units.py | Python | gpl-3.0 | 3,518 | [
"ESPResSo"
] | 2b5b8027b123a0c2edfc895a7d99d9b2276e47ba4f1798c5ea15fd4595969514 |
# Copyright (c) 2010, 2014, 2015, 2020, 2021 Smithsonian Astrophysical Observatory
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copy... | anetasie/sherpa | sherpa/astro/datastack/__init__.py | Python | gpl-3.0 | 12,731 | [
"Gaussian"
] | 94a5c2db8b1266928257b368b66f695dc76e36b44e00bfe574c99af838e2f09c |
# benchmark.py ---
#
# Filename: benchmark.py
# Description: Script for performance benchmarking
# Author:
# Maintainer:
# Created: Thu Jan 23 16:06:25 2014 (+0530)
# Version:
# Last-Updated:
# By:
# Update #: 0
# URL:
# Keywords:
# Compatibility:
#
#
# Commentary:
#
#
#
#
# Change log:... | dilawar/moose-full | moose-core/tests/python/mpi/benchmark.py | Python | gpl-2.0 | 4,953 | [
"MOOSE"
] | ab8ed6bdd28eedc1b1ffa611d34bc2a68f348e5c9fd30f3c7ea14fcc306e19b8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
## Description Tool for finding duplicates in an SDFile
##
## Authors: Inés Martínez (mmartinez4@imim.es)
## Manuel Pastor (manuel.pastor@upf.edu)
##
## Copyright 2015 Manuel Pastor
##
## This file is part of PhiToo... | manuelpastor/phitools | phitools/findDuplicates.py | Python | gpl-3.0 | 4,810 | [
"RDKit"
] | 1db3d7505532415404ebc3aa1650f9a2fa020e912d52e62ba920ae0f4b9f0e26 |
# Copyright (C) 2013 by Yanbo Ye (yeyanbo289@gmail.com)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Classes and methods for tree construction"""
__docformat__ = "restructuredtext en"
import s... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Phylo/TreeConstruction.py | Python | gpl-2.0 | 39,491 | [
"BLAST",
"Biopython"
] | 3b7ffd5406c1236b6f67d4467a401d95988453129ec2d14975706d41702e283b |
# -*- coding: utf-8 -*-
import os
import sys
from setuptools import setup, find_packages
here = os.path.abspath(os.path.dirname(__file__))
README = open(os.path.join(here, 'README.rst')).read()
requires_core = [
'Twisted[tls]==18.9.0',
'pyOpenSSL>=16.2.0',
]
if sys.platform == 'darwin':
requires_core = [... | zerotired/kotori | setup.py | Python | agpl-3.0 | 7,419 | [
"NetCDF"
] | 998e8b214784b4bfe5b8b8a98875b17f470392f6dd99508d9eb757a33e64de2a |
#!/usr/bin/env python
""" load mWGS Raw Seq Set into OSDF using info from data file """
import os
import re
from cutlass.HostTranscriptomicsRawSeqSet import HostTranscriptomicsRawSeqSet
import settings
from cutlass_utils import \
load_data, get_parent_node_id, list_tags, format_query, \
write_csv_hea... | JAX-GM/osdf_submit | nodes/host_TranscriptomicsRawSeqSet.py | Python | gpl-3.0 | 5,813 | [
"VisIt"
] | 9251c8a5b65f755f8cd3d7d97f7dc7a59f30162081bd9e1393e7c6e405b06c40 |
"""Configuration data for the "activation maximization" (am) module.
"""
from base import Config as BaseConfig
from dltb.base.observer import change
class Config(BaseConfig,
changes={'network_changed', 'layer_changed', 'unit_changed',
'config_changed'}):
"""Configuration data fo... | Petr-By/qtpyvis | tools/am/config.py | Python | mit | 6,307 | [
"Gaussian"
] | 3e064d0c021c402cbf721438917541b4d5f46272925416c51b07b2e021ba175e |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2020 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permiss... | bgoli/pysces | pysces/kraken/startup.py | Python | bsd-3-clause | 3,491 | [
"PySCeS"
] | 082e794fa44e543ad85ca7282cde91c7addb271343b483277af122395fea7e86 |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | npuichigo/ttsflow | third_party/tensorflow/tensorflow/tools/common/traverse.py | Python | apache-2.0 | 3,484 | [
"VisIt"
] | 2e19636b7d0eabc7ab0fac5813a048095eaa7d626e3e9f51bb287d73ddf18b50 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""Misura Language or Mini Language.
Secure minimal Python language subset for conditional evaluation of numerical datasets."""
import ast
from traceback import print_exc, format_exc
from time import time
from .env import BaseEnvironment, ExitException
from .objenv import Int... | tainstr/misura.canon | misura/canon/milang/milang.py | Python | mit | 6,787 | [
"VisIt"
] | 99c7b8054c8d07c76da4b7711802756f6eba5ebafb11e8669e3c4697be7b2108 |
""" RemoveLambdas turns lambda into regular functions. """
from pythran.analyses import GlobalDeclarations, ImportedIds
from pythran.passmanager import Transformation
from pythran.tables import MODULES
from copy import copy
import ast
class _LambdaRemover(Transformation):
def __init__(self, pm, name, ctx, lam... | artas360/pythran | pythran/transformations/remove_lambdas.py | Python | bsd-3-clause | 2,969 | [
"VisIt"
] | 4c9f21e77d3e0a1ead003af103e81b42658bae66094324fa7af7c9c36fb423a6 |
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | vidartf/hyperspy | hyperspy/tests/model/test_set_parameter_state.py | Python | gpl-3.0 | 4,277 | [
"Gaussian"
] | 462ac76563990fc1f8e7c10ec937c696c77fdc9b188408b1722a1072b60580cb |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import warnings
import numpy as np
from math import pi
import unittest
import os
from monty.os.path import which
from pymatgen.analysis.local_env import ValenceIonicRadiusEvaluator, \
VoronoiNN, JmolNN, M... | blondegeek/pymatgen | pymatgen/analysis/tests/test_local_env.py | Python | mit | 50,916 | [
"CRYSTAL",
"Jmol",
"Pybel",
"pymatgen"
] | 18089fea593597846ca96c816da185a6153eff0b2407862b73e48ee31c5cc4dc |
import sys, os
from ShapeAnalysisModule import ShapeAnalysisModuleWrapper
from ConfigParser import SafeConfigParser
if len(sys.argv) != 2:
print("\n\nUsage: ./SlicerSALT --no-main-window --python-script " + sys.argv[0] + " path/to/SPHARM-PDM/parameters/file\n\n")
sys.exit(1)
if not os.path.exists(sys.argv[1]):
... | bpaniagua/SPHARM-PDM | CommandLineTool/SPHARM-PDM.py | Python | apache-2.0 | 7,907 | [
"VTK"
] | fe1f09fd6c2cdadf73c76a0ca705b5d9786e2a36b88f74e2df6054b8fc6ad4f6 |
"""Define search indexes for hs_core module."""
# NOTE: this has been optimized for the current and future discovery pages.
# Features that are not used have been commented out temporarily
from haystack import indexes
from hs_core.models import BaseResource
from datetime import datetime
from nameparser import HumanNa... | hydroshare/hydroshare | hs_core/search_indexes.py | Python | bsd-3-clause | 38,075 | [
"NetCDF"
] | 17123efc2c139c83d35a377f876785be07a34777f0c7516d4e8b9163405ff7e1 |
"""Small library for working with MinION data
"""
from __future__ import print_function, division
import sys
import os
import pysam
import h5py
import subprocess
import re
import numpy as np
from itertools import islice, izip
from random import shuffle
from motif import getMotif
from serviceCourse.sequenceTools import ... | mitenjain/signalAlign | scripts/signalAlignLib.py | Python | mit | 77,140 | [
"BWA",
"pysam"
] | af7c56a02e977c424279f091ffd20714c21eda4023cd1decfba0e630f6840c51 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/interaction/LennardJonesExpand.py | Python | gpl-3.0 | 6,647 | [
"ESPResSo"
] | 82febc32f6b51f7a48eb6cde60b705788fbd5ec034b3af668def0f1a5be527a5 |
#! /usr/bin/python
import numpy as np
import cv2
import time
import sys
from debug_utils import *
show_imgs = False
def grayscale(img):
return cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
# Or use RGB2GRAY if you read an image with mpimg
def gaussian_blur(img, kernel_size):
"""Applies a Gaussian Noise kernel"""
... | RockRaidersInc/ROS-Main | vision/lane_detection_test.py | Python | gpl-3.0 | 14,400 | [
"Gaussian"
] | ca030e469974505426269349128ed1dc4f0f986bb96dfec1f77a305277653051 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGenefilter(RPackage):
"""genefilter: methods for filtering genes from high-throughput exp... | LLNL/spack | var/spack/repos/builtin/packages/r-genefilter/package.py | Python | lgpl-2.1 | 1,396 | [
"Bioconductor"
] | 428e4f3e7482b83b8bab6d1d7204374e2536ced07d9f94472cda8d8ceb3fd69c |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# vim:fenc=utf-8
#
# Copyright © 2017 Malcolm Ramsay <malramsay64@gmail.com>
#
# Distributed under terms of the MIT license.
"""Parameters for passing between functions."""
import logging
from copy import deepcopy
from pathlib import Path
from typing import Any, Dict, Tu... | malramsay64/MD-Molecules-Hoomd | statdyn/simulation/params.py | Python | mit | 6,319 | [
"CRYSTAL"
] | 559d13fe763d088069598bebe43ac1562d23771712c6a719708cee1eced28958 |
'''
Module of classes used to test M-LOOP.
'''
from __future__ import absolute_import, division, print_function
__metaclass__ = type
import numpy as np
import threading
import mloop.utilities as mlu
import numpy.random as nr
import logging
import os
import time
class TestLandscape():
'''
Produces fake landsca... | charmasaur/M-LOOP | mloop/testing.py | Python | mit | 9,788 | [
"Gaussian"
] | a25581e893fe99d6c9ab8f288689f14cb5049853e7637108c565031bd9df4a50 |
#import urllib2
import urllib
import subprocess
import time
import os.path
import sys
import getopt
from Bio.PDB import *
import openbabel
import pybel
import yaml
from rdkit import Chem
from rdkit.Chem import AllChem
from rdkit.Chem import Draw
import re
import os
from collections import Counter
import numpy as n... | cmunk/protwis | interaction/legacy_functions.py | Python | apache-2.0 | 61,900 | [
"Open Babel",
"Pybel",
"RDKit"
] | 7725aaf2411b7177c3cf824d107ff389e46b6732f9a1f898411606a4be74cf77 |
#===============================================================================
# LICENSE XOT-Framework - CC BY-NC-ND
#===============================================================================
# This work is licenced under the Creative Commons
# Attribution-Non-Commercial-No Derivative Works 3.0 Unported Li... | SMALLplayer/smallplayer-image-creator | storage/.xbmc/addons/net.rieter.xot.smallplayer/resources/libs/algorithms.py | Python | gpl-2.0 | 9,251 | [
"VisIt"
] | 8dd77dc387aab60091ab77681340ae01593c443342b4d1bdbb8c8da72e0ba6c9 |
"""
A module for generic classification purpose.
Funtionality include:
normalize_l2norm: Normalize each row has unit l_2 norm.
normalize_col_scale01: Normalize each feature (column) to scale [0,1].
normalize_row_scale01: Normalize each sample (row) to scale [0,1].
normalize_mean0std1: Normalize each feature to hav... | yifeng-li/DECRES | classification.py | Python | bsd-3-clause | 98,929 | [
"Gaussian"
] | 59d6d557a004309735616532d400e56b9793ffdb6b7b9adc9d1537ae064c37a8 |
import os
import sys
from pyspark import SparkContext, SparkConf, SparkFiles
from pyspark.sql import SQLContext, Row
from pbox_description import pbox_description
from subprocess import Popen, PIPE
from os_utils import check_file_exists, download_file
from vina_utils import get_value_from_box_center, get_value_f... | rodrigofaccioli/drugdesign | virtualscreening/vina/spark/prepare_box.py | Python | apache-2.0 | 7,824 | [
"Gromacs"
] | 27c6d7a8092d267a013a4f8ae11f4ad182e4841e2d496da1a18a70b26d998cc4 |
from urlparse import urlparse
import tarfile
import pytest
import os
from ..automation import TaskManager
import utilities
TEST_SITES = [
'http://google.com',
'http://facebook.com',
'http://youtube.com',
'http://yahoo.com',
'http://baidu.com',
'http://wikipedia.org',
'http://qq.com',
'... | Jasonmk47/OpenWPM | test/test_crawl.py | Python | gpl-3.0 | 5,398 | [
"VisIt"
] | 9cf77d0adc65899d0c7a07ff07354518681a8031e6c1b268b064d855abc65458 |
# -*- coding: utf-8 -*-
# Copyright 2013 splinter authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
from __future__ import with_statement
import __builtin__
import unittest
from splinter.exceptions import DriverNotFoundError
from fak... | bubenkoff/splinter | tests/test_browser.py | Python | bsd-3-clause | 2,373 | [
"VisIt"
] | 7d6121e6a407707f7c86c2341c9e0568043ad2690bf5df434d374d4399e281ef |
# proxy module
from __future__ import absolute_import
from mayavi.tools.modules import *
| enthought/etsproxy | enthought/mayavi/tools/modules.py | Python | bsd-3-clause | 89 | [
"Mayavi"
] | ca21a3dcb224e6b53d1574674db0040ef3b741ad2df90e3e905f1048b0478da5 |
# -*- coding: utf-8 -*-
#
# Pyplis is a Python library for the analysis of UV SO2 camera data
# Copyright (C) 2017 Jonas Gliss (jonasgliss@gmail.com)
#
# This program is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License a
# published by the Free Software Foundat... | jgliss/pyplis | scripts/more_scripts/ex001_save_all_calib_imgs.py | Python | gpl-3.0 | 3,637 | [
"Gaussian"
] | c83b4966150e6df9de2b572d49c759ffcc4641b45867129644c8a215b9f543ad |
"""Unfinished code for ZMQ/HTTP bridging. We use WebSockets instead.
Authors:
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in
# the... | cloud9ers/gurumate | environment/lib/python2.7/site-packages/IPython/frontend/html/notebook/zmqhttp.py | Python | lgpl-3.0 | 2,824 | [
"Brian"
] | 71b1c6ff7ab6dfe06229362a83a7952307ee09bffc98a4f448a1273afceab7e9 |
# coding=utf-8
"""List lesson feature tests."""
import pytest
from django.contrib.auth.models import User
from model_mommy import mommy
from pytest_bdd import (
given,
scenario,
then,
when,
)
from quiz.models import Unity, Lesson, Result
@pytest.mark.django_db
@scenario('features/list_lessons.feature... | jesuejunior/golingo | quiz/tests/functional/test_list_lessons.py | Python | bsd-3-clause | 2,945 | [
"VisIt"
] | e98ea518268ed515200c4eb59a3afc4055c28008cda60c246b42535902e20d68 |
# A collection of tools to remotely access a CATMAID server via its API
#
# Copyright (C) 2017 Philipp Schlegel
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version... | schlegelp/pymaid | pymaid/fetch.py | Python | gpl-3.0 | 183,875 | [
"NEURON"
] | 1381ecec4c0caa885779d462850eb903d0101dca9c3eaeab0c1ce8d9c2a01740 |
'''
|marx| offers several different source shapes. Tests in this module exercise
those sources (except ``SAOSAC``, which is heavily used in
:ref:`sect-tests.PSF` already).
'''
import shutil
import subprocess
import os
from collections import OrderedDict
from marxtest import base
title = 'Sources in |marx|'
tests = ... | Chandra-MARX/marx-test | tests/source.py | Python | gpl-2.0 | 10,336 | [
"Gaussian"
] | ea8c13b97a32dd76207cd0c2060cdd6e41499bffa6bc12d93a37605f0ec97c1b |
#!/usr/bin/env python
# Tsung-Yi Lin <tl483@cornell.edu>
# Ramakrishna Vedantam <vrama91@vt.edu>
import copy
import math
from collections import defaultdict
import numpy as np
def precook(s, n=4, out=False):
"""
Takes a string as input and returns an object that can be given to
either cook_refs or cook_... | MeteorKepler/RICGA | ricga/eval_tools/pycocoevalcap/cider/cider_scorer.py | Python | apache-2.0 | 7,727 | [
"Gaussian"
] | 6837a736c27f1029acb2a5ea8f723165bfa0f945dfb6e7f156038b7d2cf3d317 |
# -*- coding: utf-8 -*-
"""
Util functions
"""
import os, re, sys, traceback
import logging
logging.basicConfig(format='%(asctime)s: %(message)s', datefmt = "%H:%M:%S")
from glob import glob
from codecs import open as decode_open
import nltk
import nltk.data
import lxml
from pyquery import PyQuery as pq
from zipf... | xiaohan2012/capitalization-restoration-train | util.py | Python | mit | 12,853 | [
"CRYSTAL"
] | 1e97d92d56e9ac170e763aa31d6a409b9ea545ae46760f189eaee776d01794f8 |
# -*- coding: utf-8 -*-
"""
Created on Fri Apr 05 16:19:42 2013
package contains standard x-ray related functions. Needs to be linked to database!!!
@author: lwiegart
version 0.1: included help function in all macros [12/01/2014]
version 0.1.1: added get_gap & get_Es
version 0.1.2: added get_EBragg
version 0.1.... | sameera2004/chxtools | chxtools/xfuncs.py | Python | bsd-3-clause | 25,731 | [
"CRYSTAL"
] | 8b37ea98e8b9329e13f2d0eb6bc2c07dfe471f395002a31b84cfb7ce13df4cd4 |
import mango.utils
from .Gaussian import *
import copy
import re
import sys
import scipy as sp
import numpy as np
import scipy.stats
from mango import mpi
try:
from mango.fmm._PwGaussianMixelMixtureModel import csvParsePgmmm
except:
csvParsePgmmm = None
logger, rootLogger = mpi.getLoggers(__name__)
class Mi... | pymango/pymango | misc/python/mango/fmm/MixtureModel.py | Python | bsd-2-clause | 8,154 | [
"Gaussian"
] | d3f5824dd9c87b311b853d869bff14075bcf3b16f5213c94c9ab9a57ae2a45ce |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2007-2009 Brian G. Matherly
# Copyright (C) 2009-2010 Benny Malengier <benny.malengier@gramps-project.org>
# Copyright (C) 2010 Peter Landgren
# Copyright (C) 2010 Tim Lyons
# Copyright (C) 2... | arunkgupta/gramps | gramps/plugins/docgen/htmldoc.py | Python | gpl-2.0 | 22,637 | [
"Brian"
] | 964c2c61c369afa2f298b0b1932fd1232cd62f48d04974e1ea63a611fcf8ca59 |
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/io | tensorflow_io/python/api/experimental/filter.py | Python | apache-2.0 | 888 | [
"Gaussian"
] | 58a25ef3d756d5bd14fbf4d5b685f87a85df8f1d97351bd35cba54134915b11d |
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