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import sys
sys.path.append( '../../_build/moose' )
import moose
print( 'Using moose from %s' % moose.__file__ )
f = moose.Function( '/f' )
f.expr = 'rand(1)'
moose.reinit()
for i in range( 10 ):
moose.start( 1 )
print f.value
| rahulgayatri23/moose-core | tests/issues/issue_muparser_rand.py | Python | gpl-3.0 | 235 | [
"MOOSE"
] | ef044dc24af57afcd3bd3a389f3ee3a925f14694cbd8f742abbca67d53aec4e4 |
# -*- coding: utf-8 -*-
"""
[Python 2.7 (Mayavi is not yet compatible with Python 3+)]
Created on Tue Feb 10 18:27:17 2015
@author: Ryan Stauffer
https://github.com/ryanpstauffer/market-vis
Market Visualization Prototype
Visualization and Interactive module
"""
import numpy as np
import moviepy.editor as... | ryanpstauffer/market-vis | marketvis/visualization.py | Python | mit | 2,880 | [
"Mayavi"
] | fabddea25f885b7e0d92c6c2fb8ba234eba93aa6823d3f9931af2753c5e3b767 |
from __future__ import division
import numpy as np
import pylab as pl
from mpl_toolkits.axes_grid1 import make_axes_locatable
import fastfit
# Set for our camera
sx, sy, pixelsize = 640, 480, 5.6
def sizetext(sx, sy):
"""
Check if the difference between the two axes are similar or different
Returns displ... | UltracoldAtomsLab/labhardware | projects/beamprofile/interface.py | Python | mit | 7,631 | [
"Gaussian"
] | 4b568beb262a986dd8c24255f67746c3e56507f18ada7ffb37dcd67ae4c1c284 |
__RCSID__ = "$Id$"
'''
FileCatalogFactory class to create file catalog client objects according to the
configuration description
'''
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Resources.Catalog.FileCatalogProxyClient import FileCatalogProxyClient
from DIRAC.ConfigurationSystem.Client.Helpers.Resources impo... | sposs/DIRAC | Resources/Catalog/FileCatalogFactory.py | Python | gpl-3.0 | 2,618 | [
"DIRAC"
] | f4a36bda6d27de028908c5e610bb8697fc389190875818f88d51c848c31f4c20 |
"""
.. module:: parser_mp
:synopsis: Definition of the command line options
.. moduleauthor:: Benjamin Audren <benjamin.audren@epfl.ch>
.. moduleauthor:: Francesco Montesano <franz.bergesund@gmail.com>
Defines the command line options and their help messages in
:func:`create_parser` and read the input command line... | miguelzuma/montepython_zuma | montepython/parser_mp.py | Python | mit | 36,893 | [
"Gaussian"
] | 7fc9f3d3a879966ef5b14da3181a900527e8d3428c58a4e5c56b3cd6b1e13759 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/src/bigdl/orca/data/pandas/preprocessing.py | Python | apache-2.0 | 12,841 | [
"ORCA"
] | 583e1266a961d721190c68489250948b72e6b34cee939997f1da6a0dd3ff23af |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | larroy/mxnet | python/mxnet/ndarray/numpy_extension/random.py | Python | apache-2.0 | 10,473 | [
"Gaussian"
] | 4ce3ff8603415e0c4a15064b408529e6b34c508dac0ec59905b6f9bd71981a62 |
# classifier - classification algorithms for Bregman toolkit
__version__ = '1.0'
__author__ = 'Michael A. Casey'
__copyright__ = "Copyright (C) 2010 Michael Casey, Dartmouth College, All Rights Reserved"
__license__ = "GPL Version 2.0 or Higher"
__email__ = 'mcasey@dartmouth.edu'
import numpy as N
import scipy.linal... | bregmanstudio/BregmanToolkit | bregman/classifier.py | Python | mit | 11,802 | [
"Gaussian"
] | b792206a851addd2fcfc1fd881d5bd0a2d1a57f8beb9077b6f4192674c08d03c |
# Version: 0.19
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/python-versioneer/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible with: Python 3.6, 3.7, 3.8, 3.9 and pypy3
* [![Latest Version][pypi... | pymor/pymor-deal.II | versioneer.py | Python | bsd-2-clause | 70,238 | [
"Brian"
] | eba028cc37a274e262ecc5e8d8cd076c1dfacaac63e8b39d9f8d55a76d3a0ac8 |
#!/usr/local/bin/python
"""
Cantera .cti input file processor
The functions and classes in this module process Cantera .cti input
files and produce CTML files. It can be imported as a module, or used
as a script.
script usage:
python ctml_writer.py infile.cti
This will produce CTML file 'infile.xml'
"""
imp... | blurock/CANTERA | RunIgnition/examples/RunIgnition/ctml_writer.py | Python | gpl-3.0 | 51,733 | [
"CRYSTAL"
] | 057570af94a1595452c3a15dc09673bda3731c4b779e7b34f4e7018145a35893 |
import numpy as np
import logging
from collections import defaultdict, Counter
from itertools import izip, imap
from operator import itemgetter
from tqdm import tqdm
from cityhash import CityHash32
from .containers import RandomChoiceDict
class NDHashable(object):
"""Turn NumPy NDArray into a hashable object
... | escherba/annx | annx/pyann/gauss.py | Python | mit | 8,078 | [
"Gaussian"
] | f26e4156b6d3638b25793e0785ab237ed57e1acb10c35c3384af64d71cc949ca |
"""
Single Bubble Model: Droplet simulations
=========================================
Use the ``TAMOC`` `single_bubble_model` to simulate the trajectory of a light
oil droplet rising through the water column. This script demonstrates the
typical steps involved in running the single bubble model.
It uses the ambient... | socolofs/tamoc | bin/sbm/drop_biodeg.py | Python | mit | 2,096 | [
"NetCDF"
] | 4b3da33dc60f7baa8884c08dfb67db9aaafdb4f6355f29aef709694c2ba94956 |
from collections import defaultdict
import toolshed as ts
import numpy as np
import pandas as pd
from .crystal import Feature, CountFeature
import os
def example_random_cluster(n_samples=20, n_sites=4, seed=42):
np.random.seed(seed)
if n_samples % 2 != 0: n_samples += 1
covs = pd.DataFrame({'gender': ['F... | kidaa/crystal-1 | crystal/utils.py | Python | mit | 3,815 | [
"CRYSTAL"
] | 870ed8eceafc92f6c1bcc76abb461d8256ce7450d65a10913344cc2e187ccd0d |
import numpy as np
def get_key_to_indexes_dic(labels):
"""
Builds a dictionary whose keys are the labels and whose
items are all the indexes that have that particular key.
"""
# Get the unique labels and initialize the dictionary
label_set = set(labels)
key_to_indexes = {}
for label ... | h-mayorquin/competitive_and_selective_learning | functions.py | Python | mit | 1,475 | [
"NEURON"
] | 4d7871e222d9be177d7dfa9912678ed603225def7215dcb04cdc8314394f1d35 |
# This file is part of PyEMMA.
#
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER)
#
# PyEMMA is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either vers... | fabian-paul/PyEMMA | pyemma/coordinates/tests/test_source.py | Python | lgpl-3.0 | 9,194 | [
"MDTraj"
] | 51fc7181aa1e70b3212991bd7be98115b3c6890d7fbb20cfadf61327bec1371d |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/AngularUniquePotential.py | Python | gpl-3.0 | 2,263 | [
"ESPResSo"
] | 8061622265049254eba919188619a1088802fecff8305a19cb8ed48b8545f302 |
# -*- coding: utf-8 -*-
import os
import datetime
import subprocess
from flask import Blueprint, jsonify, current_app
from flask.ext.misaka import markdown
from werkzeug.contrib.atom import AtomFeed
import codecs
import shutil
import math
from mako.template import Template
from mako.lookup import TemplateLookup
fro... | gaowhen/summer | summer/view/build/build.py | Python | mit | 4,518 | [
"GULP"
] | 3c19cba3d98af3e957d2e7224de8c7720b7c4afe8f81a05a8934b9a5eaf514df |
# Copyright 2008-2015 Nokia Solutions and Networks
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable l... | wojciechtanski/robotframework | src/robot/model/testcase.py | Python | apache-2.0 | 2,435 | [
"VisIt"
] | af2531e3f61f27e5bbee646227140ac6dee883345a484e1ad9139e0683f3a3f2 |
from electrum.i18n import _
fullname = _('Two Factor Authentication')
description = ''.join([
_("This plugin adds two-factor authentication to your wallet."), '<br/>',
_("For more information, visit"),
" <a href=\"https://api.trustedcoin.com/#/electrum-help\">https://api.trustedcoin.com/#/electrum-help</a>... | valesi/electrum | plugins/trustedcoin/__init__.py | Python | gpl-3.0 | 468 | [
"VisIt"
] | e47f410e73976cffb4cb304e0e3eef512434a71e1bcf629134ac65866f738cd6 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/fci/test/test_spin1_symm.py | Python | apache-2.0 | 3,685 | [
"PySCF"
] | ecc1dc307b4cdce85684c1fe7cd5ae958263bcb1de6bd9ca8e44a2e8253487cb |
#!/usr/local/bin/python
# -- coding: utf-8 --
import nltk
from __future__ import division
# ------------------------------------------------------------------------------
# Work through the http://nltk.org/book/
# -- gene at ology dot net not dot com
#
# Handy links:
# http://nltk.org/
# http://stackoverflow.com/quest... | ology/NLTK-Study | ch02.py | Python | artistic-2.0 | 32,251 | [
"ORCA"
] | ddbffaf5b2158200d31abf5ebea6fc713ea981467f78ce3e52ef1a9c14023fef |
"""
InaSAFE Disaster risk assessment tool developed by AusAid -
**IS Utilitles implementation.**
Contact : ole.moller.nielsen@gmail.com
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foun... | fivejjs/inasafe | safe_qgis/utilities.py | Python | gpl-3.0 | 44,063 | [
"VisIt"
] | 972d610f5e884ca3150c8f88e3c0d5beb2d48b9ee7fde826faf5bec4aeb30133 |
#please add any of the toy examples you build with comprehensions here
fish_tuple = ('blowfish', 'clownfish', 'catfish', 'octopus')
# make a list of all fish with a for loop
fish_list = []
for fish in fish_tuple:
if fish != 'octopus':
fish_list.append(fish)
# print(fish_list)
# make a list of all fish us... | developerQuinnZ/this_will_work | student-work/ashley_riehl/week_2/day_1/working_with_csvs/comprehensions.py | Python | mit | 656 | [
"Octopus"
] | 13ecc69af5a5e9ce69e31936c6b32da37f0ceba21ca8dd38b5030019ffefba5c |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string, optparse, subprocess
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','desc... | hoyo/TiMultipeer | build.py | Python | mit | 8,785 | [
"VisIt"
] | e7b2168aeeefa91f98d396e52529e8809ec3d61c1cd25d5eee5e9c12bca67430 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Copyright (c) 2014 windpro
Author : windpro
E-mail : windprog@gmail.com
Date : 15/1/28
Desc :
"""
import os
import geventwebsocket
from geventwebsocket.server import WebSocketServer
PORT = 8000
def echo_app(environ, start_response):
websocket = env... | windprog/requestspool | tests/websocketservertest.py | Python | mit | 1,522 | [
"VisIt"
] | de8cb6bee7184742613d0a512ca91201d4bbd09444aca5b2d1d4fe152315561a |
# Copyright 2014 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | schwehr/gdal-autotest2 | python/gdrivers/gdrivers_util.py | Python | apache-2.0 | 22,015 | [
"NetCDF"
] | 1f418b487babb242b52342c11f596ddc3b7945b781c6df787f847d6e7dd0105a |
# -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""The fsl module provides classes for interfacing with the `FSL
<http://www.fmrib.ox.ac.uk/fsl/index.html>`_ command line tools. This
was written to work with FSL version 4.1.4.
... | carolFrohlich/nipype | nipype/interfaces/fsl/preprocess.py | Python | bsd-3-clause | 75,161 | [
"Gaussian",
"VTK"
] | ccde6d76ec02cac8bf506136b6ec64a2e930b22517538a0040ca51c7e596e0b4 |
# https://clifford.readthedocs.io/en/latest/SpaceTimeAlgebra.html
from . import Cl, BladeMap
# Dirac Algebra `D`
D, D_blades = Cl(1, 3, firstIdx=0, names='d')
# Pauli Algebra `P`
P, P_blades = Cl(3, names='p')
# put elements of each in namespace
locals().update(D_blades)
locals().update(P_blades)
bm = BladeMap([... | arsenovic/clifford | clifford/sta.py | Python | bsd-3-clause | 594 | [
"DIRAC"
] | db632d39783a7a159eddd548a7e86eec7306b27c482664a9584b559f1abe971e |
from vtk import *
import os.path
data_dir = "../../../../VTKData/Data/Infovis/SQLite/"
if not os.path.exists(data_dir):
data_dir = "../../../../../VTKData/Data/Infovis/SQLite/"
if not os.path.exists(data_dir):
data_dir = "../../../../../../VTKData/Data/Infovis/SQLite/"
sqlite_file = data_dir + "temperatures.db"
#... | collects/VTK | Examples/Infovis/Python/streaming_statistics.py | Python | bsd-3-clause | 3,118 | [
"VTK"
] | d195ce278272a045b36090f62cbc074d356df3b75ebb308e999ac4b270d77433 |
#!/usr/bin/env python
__author__ = "Greg Caporaso"
__copyright__ = "Copyright 2011, The QIIME Project"
__credits__ = ["Rob Knight", "Greg Caporaso", "Kyle Bittinger", "Jens Reeder",
"William Walters", "Jose Carlos Clemente Litran",
"Adam Robbins-Pianka", "Jose Antonio Navas Molina"]
__lice... | adamrp/qiime | qiime/pick_otus.py | Python | gpl-2.0 | 82,387 | [
"BLAST"
] | 06e4d4b00fc3857092582e4426e18fa7252474661ca9ed27c9de0b22c066f6f0 |
from setuptools import setup
setup(
name='mercuro',
version='0.1.1',
author='Brian Cline',
author_email='brian.cline@gmail.com',
description=('A simple daemon that listens for syslog events and '
'forwards them to a Riemann server.'),
license = 'Apache',
keywords = 'syslog... | briancline/mercuro | setup.py | Python | apache-2.0 | 833 | [
"Brian"
] | b9a918633c2b538bc96cc6e523e4b3d176f6186c1de1abc113254fe866805ae9 |
import unittest
from pycparser import parse_file
import minic.c_ast_to_minic as ctoc
import minic.minic_ast as mast
class TestVisitor(mast.NodeVisitor):
def __init__(self):
self.assignment_counter = 0
self.forl_counter = 0
def visit_Assignment(self, assignment):
self.assignment_count... | martylee/Python | CSC410-Project-1-master/tests/test_nodevisitors.py | Python | gpl-2.0 | 699 | [
"VisIt"
] | 1be42e637460301662fc42689984fa7ad12e6ed8304e46ce7a89543cf5099a64 |
r"""OS routines for Mac, NT, or Posix depending on what system we're on.
This exports:
- all functions from posix, nt or ce, e.g. unlink, stat, etc.
- os.path is either posixpath or ntpath
- os.name is either 'posix', 'nt' or 'ce'.
- os.curdir is a string representing the current directory ('.' or ':')
- os.... | 171121130/SWI | venv/Lib/os.py | Python | mit | 34,425 | [
"VisIt"
] | 8a9eb9c72489e99f4d20c3e9ca11b15aaaeadcc129db6b94cafb1df1fe4406f9 |
########################################################################
# File: RegisterOperation.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/03/19 13:55:14
########################################################################
""" :mod: RegisterFile
==================
.. module: RegisterFile
... | yujikato/DIRAC | src/DIRAC/DataManagementSystem/Agent/RequestOperations/RegisterFile.py | Python | gpl-3.0 | 5,299 | [
"DIRAC"
] | 8bc9bcce591d5a05ecd7bd50348dac5a9372f92ec720a92d10a625abcd61ec9c |
"""
Manage transfers from arbitrary URLs to temporary files. Socket interface for
IPC with multiple process configurations.
"""
import os, subprocess, socket, logging, threading
from galaxy import eggs
from galaxy.util import listify, json
log = logging.getLogger( __name__ )
class TransferManager( object ):
"""... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/jobs/transfer_manager.py | Python | gpl-3.0 | 8,605 | [
"Galaxy"
] | 63902fca5f0c33dc8eafed12033be2b730b183f8682026ab2f95ddacf7aee4cd |
from pyramid import testing
from pyramid.session import UnencryptedCookieSessionFactoryConfig
import pytest
from pyramid_crud import forms, views
from webob.multidict import MultiDict
@pytest.fixture
def pyramid_request():
r = testing.DummyRequest()
r.POST = MultiDict()
return r
@pytest.yield_fixture
de... | Javex/pyramid_crud | tests/test_integration.py | Python | mit | 8,372 | [
"VisIt"
] | 69690b0444f08b2ba0edd74dc38423264540464855ef280aeedf47f2ab443f81 |
#!/usr/bin/env python
import vtk
class TerminationCrashTestCase:
"""This test case should produce a crash on termination if we aren't
careful in DECREFing a Python callback via vtkPythonCommand.
The problem occurs only when you have an uncollectable reference
cycle with an observer callbac... | timkrentz/SunTracker | IMU/VTK-6.2.0/Common/Core/Testing/Python/TestTerminationCrash.py | Python | mit | 1,445 | [
"VTK"
] | cec69741e62d943bd48fbc4c94d2069cc214e9b00d6891e6bee21624d124bb78 |
"""
This module is used to create an appropriate object which can be used to insert records to the Monitoring system.
It always try to insert the records directly. In case of failure the monitoring client is used...
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_... | ic-hep/DIRAC | src/DIRAC/MonitoringSystem/Client/ServerUtils.py | Python | gpl-3.0 | 1,130 | [
"DIRAC"
] | 95cbf92ed58963a252bd131a035fff052e563fd7cba38241b56c5a7bd72decfc |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""The ants module provides basic functions for interfacing with WMQL."""
import os
import glob
from nipype.interfaces.base import (CommandLine, CommandLineInputSpec, TraitedSpec, traits)
class TractQue... | BRAINSia/tract_querier | tract_querier/nipype/wmql.py | Python | bsd-3-clause | 5,548 | [
"VTK"
] | a09b5e727ce4c4eeec629fa7ca13ab27a83478cfb571c2108cff3c2b0078ba7c |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageEllipsoidSource(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | chrisidefix/devide | modules/vtk_basic/vtkImageEllipsoidSource.py | Python | bsd-3-clause | 488 | [
"VTK"
] | dc5642086cbfc93e32eb7c101214369bac571d00a7f19635785b3f302660c72d |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# This file is part of Radicale Server - Calendar Server
# Copyright © 2009-2013 Guillaume Ayoub
#
# This library is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eit... | UIKit0/Radicale | setup.py | Python | gpl-3.0 | 3,051 | [
"VisIt"
] | 291e40c162011ee69767fcfdae654656d470ac75c497edb1410a513f8dc2841a |
import os
import unittest
from pymatgen.core.periodic_table import Element
from pymatgen.util.testing import PymatgenTest
from pymatgen.io.phonopy import *
import sys
if sys.version_info >= (3, 0):
try:
from phonopy import Phonopy
from phonopy.structure.atoms import PhonopyAtoms
from phono... | montoyjh/pymatgen | pymatgen/io/tests/test_phonopy.py | Python | mit | 5,833 | [
"phonopy",
"pymatgen"
] | c3f098455bbd460cefcd84fb05699ca753d34f99fa04b09de14efca576f1a0b2 |
#!/usr/bin/env python3
import sys
import numpy as np
import argparse
import matplotlib.pyplot as plt
from analysisTools import sensibleIds, groundOffset, quadrantAnalysis
from netcdfTools import read3dDataFromNetCDF, netcdfOutputDataset, \
createNetcdfVariable, netcdfWriteAndClose
from utilities import filesFromList,... | mjsauvinen/P4UL | pyNetCDF/reynoldsStressNetCdf.py | Python | mit | 6,222 | [
"NetCDF"
] | 1dd5fe079791e1e1823858699efa30beee58e47e3348cc62c21bea6bb8db643b |
# Unit tests for cache framework
# Uses whatever cache backend is set in the test settings file.
import copy
import io
import os
import pickle
import re
import shutil
import tempfile
import threading
import time
import unittest
import warnings
from unittest import mock
from django.conf import settings
from django.core... | sjlehtin/django | tests/cache/tests.py | Python | bsd-3-clause | 91,787 | [
"Brian"
] | 5de2db7bb459f4df0e71966776fdaf78b1b9dbda639bb83a3b9a3db31330f6b3 |
# $Id$
#
# Copyright (C) 2003-2006 Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
try:
from reportlab import platypus
... | rdkit/rdkit-orig | rdkit/Dbase/DbReport.py | Python | bsd-3-clause | 7,416 | [
"RDKit"
] | 9253b2752d61ab35e803af1ff97d2b1524e49b07197bfcdc76fab29b836ae4ca |
# -*- python -*-
# Copyright (C) 2009-2013 Free Software Foundation, Inc.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later versio... | h4ck3rm1k3/OpenWrt-Firefly-SDK | staging_dir/toolchain-mipsel_24kec+dsp_gcc-4.8-linaro_uClibc-0.9.33.2/lib/libstdc++.so.6.0.19-gdb.py | Python | gpl-2.0 | 2,580 | [
"Firefly"
] | 52cf6f0f80f1d48db22e1a2400ce5b496f357689d08e9a1446c9d23ebf900b26 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
# ... | SKIRT/PTS | magic/config/extract.py | Python | agpl-3.0 | 2,224 | [
"Galaxy"
] | 750de49014f46483d8421f49e5c80e6ae66ee1450bd194572ae8a1ad04ab3a69 |
"""
Distributions
"""
from __future__ import division, absolute_import
from functools import wraps
from abc import ABCMeta
from abc import abstractmethod
import scipy as sp
import numpy as np
from pygam.core import Core
from pygam.utils import ylogydu
def multiply_weights(deviance):
@wraps(deviance)
def mu... | dswah/pyGAM | pygam/distributions.py | Python | apache-2.0 | 17,299 | [
"Gaussian"
] | 0efe767e90f7592b7fc479c70acdf11f960f79d0d71d78ec06855515fecbd348 |
# -*- coding: utf-8 -*-
#
# network.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (... | weidel-p/nest-simulator | pynest/examples/Potjans_2014/network.py | Python | gpl-2.0 | 21,785 | [
"NEURON"
] | 41be4ac70e42bc236a5887219274a39a3e3e0dc38c5d6c2b17f6ec3026b580f8 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either versi... | pmghalvorsen/gramps_branch | gramps/gui/plug/report/_webreportdialog.py | Python | gpl-2.0 | 1,982 | [
"Brian"
] | c9140a3c7b3316801066cad9ecd9ffaa697582abe582dc896de94bfd66a96c8e |
# Copyright (c) 2012-2014, Max Zwiessele, James Hensman
# Licensed under the BSD 3-clause license (see LICENSE.txt)
__doc__ = """
Inference over Gaussian process latent functions
In all our GP models, the consistency propery means that we have a Gaussian
prior over a finite set of points f. This prior is
math:: N(... | beckdaniel/GPy | GPy/inference/latent_function_inference/__init__.py | Python | bsd-3-clause | 3,440 | [
"Gaussian"
] | 22f32d9750a7be3d23797f752353c9122015a7e05e80f994ea08d426c63896ac |
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'Visit.mobile'
db.add_column(u'clinics_visit', 'mobile',
... | myvoice-nigeria/myvoice | myvoice/clinics/migrations/0025_auto__add_field_visit_mobile.py | Python | bsd-2-clause | 14,087 | [
"VisIt"
] | d1befe8315f4838db41b3a1c1b38d36cda02700d076903ce20e929c06215bb83 |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2017 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | QuantumElephant/horton | horton/io/test/test_molden.py | Python | gpl-3.0 | 8,205 | [
"ORCA",
"Psi4",
"TURBOMOLE"
] | 28dc8733a8b41184a7094abb51eeeebc97e4c5d98dcd4328f9d9972351b42806 |
""" DIRAC FileCatalog mix-in class to manage users and groups within the FC database
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import six
import time
import threading
from DIRAC import S_OK, S_ERROR, gConfig, gLogger
from DIRAC... | yujikato/DIRAC | src/DIRAC/DataManagementSystem/DB/FileCatalogComponents/UserGroupManager/UserAndGroupManagerDB.py | Python | gpl-3.0 | 8,952 | [
"DIRAC"
] | ab84be12a275a74f33bdc2cd77c4ca57d7c9f1d067e78dc2165d0ddbaff52a4a |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your ... | Forage/Gramps | gramps/gen/plug/_export.py | Python | gpl-2.0 | 2,836 | [
"Brian"
] | 55ee33f7fcf720346f598fb8c08939d96b5e87b1d17fcef90fe1f10ced99e339 |
from mypyli import blastparser
from Bio import SeqIO
import argparse
import logging
import sys
def get_seq_ids(fasta_f):
""" Returns a list of sequence headers and makes sure they are all unique."""
ids = []
with open(fasta_f, 'r') as IN:
for seq in SeqIO.parse(IN, 'fasta'):
ids.append... | hunter-cameron/Bioinformatics | job_scripts/tati/implement_qiime_blast_taxonomy.py | Python | mit | 3,420 | [
"BLAST"
] | 2c4c4dfbb2ff577ffe52948907025322d7bdc9afe2225e3d8be96ac426eb4ccd |
# (c) 2015, Brian Coca <bcoca@ansible.com>
# (c) 2012-17 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
DOCUMENTATION = """
lookup: url
author: Brian Coca (@bcoca)
versi... | aperigault/ansible | lib/ansible/plugins/lookup/url.py | Python | gpl-3.0 | 3,817 | [
"Brian"
] | 36027350b0794648148206af5e78be10266c599325b28cd640fc2aa638cb5edf |
# -*- coding: utf-8 -*-;
# Generated by Django 1.11.23 on 2020-01-29 09:38
from __future__ import unicode_literals
import django.db.models.deletion
import enumfields.fields
import filer.fields.image
from decimal import Decimal
from django.conf import settings
from django.db import migrations, models
import shuup.core... | shoopio/shoop | shuup/core/migrations/0068_help_text_improvements.py | Python | agpl-3.0 | 40,311 | [
"VisIt"
] | 8e4d6aa0fcd83b9ace7b8c6d85253feab03b3b654de86a7b772189916ed03837 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
__author__ = 'kmu'
"""
Test to read netcdf files from thredds.met.no
"""
#from matplotlib import pyplot as plt
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import numpy as np
import netCDF4
# Access netcdf file via OpenDAP
filename = 'http://th... | kmunve/TSanalysis | Test/thredds_test.py | Python | mit | 1,766 | [
"NetCDF"
] | bc5d5d4062ba292c9b59fec7a911e4417602b887f8b9b302e37d16244952d1d5 |
# Author(s): TJ Lane (tjlane@stanford.edu) and Christian Schwantes
# (schwancr@stanford.edu)
# Contributors: Vince Voelz, Kyle Beauchamp, Robert McGibbon
# Copyright (c) 2014, Stanford University
# All rights reserved.
"""
Functions for performing mean first passage time
calculations for an MSM.
For a usef... | dr-nate/msmbuilder | msmbuilder/tpt/mfpt.py | Python | lgpl-2.1 | 6,342 | [
"MDTraj"
] | 37355234b729e33977f4a6b4fcebf07136b77f9c7311472423098582550ea11e |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this file,
# You can obtain one at http://mozilla.org/MPL/2.0/.
from node import NodeVisitor, ValueNode, BinaryExpressionNode
from parser import precedence
def escape(string, extras=... | indykish/servo | tests/wpt/harness/wptrunner/wptmanifest/serializer.py | Python | mpl-2.0 | 3,478 | [
"VisIt"
] | 9cc539d691c923b15d58fc37c6c626411f26b9a4a4293624cc3d50ddf940ce27 |
# coding: utf-8
from __future__ import unicode_literals
import itertools
import re
import xml
from .common import InfoExtractor
from ..utils import (
clean_html,
dict_get,
ExtractorError,
float_or_none,
get_element_by_class,
int_or_none,
js_to_json,
parse_duration,
parse_iso8601,
... | kidburglar/youtube-dl | youtube_dl/extractor/bbc.py | Python | unlicense | 59,081 | [
"VisIt"
] | 9d7a37a3e8fd1312a7d42c280424d4460170ed23839a4c9b5fe233108a1c421e |
import matplotlib.pyplot as plt
import numpy as np
import glob
#delete the headers every timesteps (snapshots)
'''
sed -i '/ITEM: TIMESTEP/,+8d' dump.test
'''
natoms = 86718 #2023 21054 9126
nsnaps = 31 #no. of snaps
filename = 'dump.test' # lammps dump file after processing with 'sed' command
flist = glob.glob... | msadat/python-scripts | del_types_dump_write.py | Python | gpl-3.0 | 2,281 | [
"LAMMPS"
] | 4c0489be1ac16a750627affcc4aabad36f69b67fc68131bad710358d565786d5 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Implementation of defect correction methods.
"""
import logging
import matplotlib.pyplot as plt
import numpy as np
import scipy
from scipy import stats
from pymatgen.analysis.defects.core import DefectCo... | richardtran415/pymatgen | pymatgen/analysis/defects/corrections.py | Python | mit | 38,404 | [
"VASP",
"pymatgen"
] | a62a74149ea1d7658a13ae0cc9135035353ba30c186085447ff993919a8b743d |
#*- coding : utf-8 -*-
'''
Created on 2011-01-18\n
The twist angle for G-DNA is defined from a JCTC article. which DOI is 10.1021/ct100253m.
The twist angle is defined using the angle between the line of C1' atoms in a G-quartet layer.
@version: 0.1.0
@author: zhuh
@change:
- 2011-01-18\n
- Create this fi... | zhuhong/g4analysis | G4Analysis/G4_twist.py | Python | gpl-2.0 | 9,527 | [
"MDAnalysis"
] | 7a5f824b80f70f915297730b5b687e631c7a8e36fd4edd61f7e5fd206011b115 |
'''
Created on Jun 4, 2011
@author: mkiyer
chimerascan: chimeric transcript discovery using RNA-seq
Copyright (C) 2011 Matthew Iyer
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 ... | tectronics/chimerascan | chimerascan/deprecated/old_nominate_chimeras.py | Python | gpl-3.0 | 8,393 | [
"pysam"
] | 3a3ffba4a608a478548fdda94d2e8159cdebcf7697ed4a2c1e1c7b29bf8de505 |
# -*- coding: utf-8 -*-
'''
Provide authentication using YubiKey.
.. versionadded:: 2015.5.0
:depends: yubico-client Python module
To get your YubiKey API key you will need to visit the website below.
https://upgrade.yubico.com/getapikey/
The resulting page will show the generated Client ID (aka AuthID or API ID)... | stephane-martin/salt-debian-packaging | salt-2016.3.3/salt/auth/yubico.py | Python | apache-2.0 | 2,096 | [
"VisIt"
] | fe6470dd10a207bb6ea7a35c955a26482d32b81af03b1b90e9cc88ae303eae9d |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Get polarizability from X0h server (http://x-server.gmca.aps.anl.gov/x0h.html).
For details see http://x-server.gmca.aps.anl.gov/pub/Stepanov_CR_1991_08.pdf.
"""
from __future__ import division
import math
import re
import requests
X0H_SERVER = 'http://x-server.gmca.aps.... | mrakitin/sirepo | sirepo/crystal.py | Python | apache-2.0 | 5,120 | [
"CRYSTAL"
] | e01e42f0e4e120b867330d089aa0831d05c33b3a80a114051c20ba95b4d0e15a |
from aces.materials import Material
from aces.modify import get_unique_atoms
from ase import Atoms,Atom
from math import pi,sqrt
from ase.dft.kpoints import ibz_points
from aces import config
from ase.lattice import bulk
import numpy as np
from aces.tools import *
class structure(Material):
def set_parameters(self):
... | vanceeasleaf/aces | aces/materials/NaCl.py | Python | gpl-2.0 | 1,655 | [
"ASE"
] | af1cba7bd6427027dea21cffcca74d77bbadf9057340dd44bf3af3945d6e93fb |
tutorial_tests = """
Let's try a simple generator:
>>> def f():
... yield 1
... yield 2
>>> for i in f():
... print(i)
1
2
>>> g = f()
>>> next(g)
1
>>> next(g)
2
"Falling off the end" stops the generator:
>>> next(g)
Traceback (most recent call last... | timm/timmnix | pypy3-v5.5.0-linux64/lib-python/3/test/test_generators.py | Python | mit | 49,731 | [
"VisIt"
] | d7b49bcee7bdd5509440b1f53a3580e2eed869cc3818e262b6cd4f7263701295 |
import os
import sys
import random
import time
import math
import torchvision
from torch import optim
import io
from PIL import Image
import visdom
vis = visdom.Visdom()
import matplotlib.ticker as ticker
import socket
hostname = socket.gethostname()
from .pssm2go_model import *
from .baselines import *
from ... | yotamfr/prot2vec | src/python/pssm2go_train.py | Python | mit | 27,410 | [
"BLAST"
] | 8c52bac0333276678104d35303faf6bd0724d81880ee8cda185e8dc54a20dee1 |
# -*- coding: utf-8 -*-
# Copyright (c) 2011 - 2015 Detlev Offenbach <detlev@die-offenbachs.de>
#
"""
Package implementing cryptography related functionality.
"""
from __future__ import unicode_literals
import random
import base64
from PyQt5.QtCore import QCoreApplication
from PyQt5.QtWidgets import QLineEdit, QIn... | paulmadore/Eric-IDE | 6-6.0.9/eric/Utilities/crypto/__init__.py | Python | gpl-3.0 | 10,304 | [
"EPW"
] | bda8cb9c914006b5ca09ccfec9746668060abd6659d449fb690d5f55ad6553bc |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from datetime import timedelta
from collections import defaultdict
import functools
import itertools
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
from . import common
from ... | jhamman/xray | xarray/core/variable.py | Python | apache-2.0 | 54,258 | [
"NetCDF"
] | 8f26af5b7c80ae8ba16a2b43ffb7e067bc31ec2d9e96109828a5d5d5471d198a |
#!/usr/bin/python
# Copyright (C) 2011 Tianyang Li
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This pro... | tianyang-li/meta-transcriptome | get_sam_db_aligned.py | Python | gpl-3.0 | 986 | [
"HTSeq"
] | 193b097dc34f9f32cefe13415f1a558cb0d1bb511f9d37b0e0d94e9acc08c726 |
# Copyright 2020 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
from __future__ import annotations
from textwrap import dedent
import pytest
from pants.backend.codegen.protobuf.python.python_protobuf_subsystem import (
rules as protobuf_subsyste... | pantsbuild/pants | src/python/pants/backend/python/typecheck/mypy/rules_integration_test.py | Python | apache-2.0 | 29,373 | [
"BLAST"
] | 356bbec93c078f7cb1c01ff1a96b81a5607ca5e4212cf906a59f9910901f7551 |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""Unit tests for the :mod:`iris.tests.stock.netcdf` module."""
import shutil
import tempfile
from iris import load_cube
from... | bjlittle/iris | lib/iris/tests/unit/tests/stock/test_netcdf.py | Python | lgpl-3.0 | 5,089 | [
"NetCDF"
] | b0fdb79b34aeb979488de63a256cb20bab7687b1500490d0332e0adfedaa6713 |
#from opengmcore import _opengmcore.adder as adder
from opengmcore import *
from __version__ import version
from functionhelper import *
from _inf_param import _MetaInfParam , InfParam
from _visu import visualizeGm
from _misc ... | yanlend/opengm | src/interfaces/python/opengm/__init__.py | Python | mit | 12,141 | [
"VisIt"
] | 3daa85a5e872d504d2f97b0db7c5099423f9937f48d686fca87ea1b4f9fde61c |
#!/usr/bin/python
"""
Copyright 2016 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of th... | druss316/G-Harvestor | checkAlerts.py | Python | gpl-3.0 | 15,402 | [
"Galaxy"
] | 43129fb2c58f896a75523818aa41de43035dd50ebd6fb087e7e3899794c41aa7 |
from sympy.physics.matrices import msigma, mgamma, minkowski_tensor, pat_matrix
from sympy import zeros, eye, I, Matrix
def test_parallel_axis_theorem():
# This tests the parallel axis theorem matrix by comparing to test
# matrices.
# First case, 1 in all directions.
mat1 = Matrix(((2, -1, -1), (-1, ... | lidavidm/mathics-heroku | venv/lib/python2.7/site-packages/sympy/physics/tests/test_physics_matrices.py | Python | gpl-3.0 | 2,212 | [
"DIRAC"
] | 871238326da5471a6ba84191f092fb1ea36df43db7a70acb5154fd0b7284e389 |
# -*- coding: utf-8 -*-
"""
Lower calls.
"""
from pykit import types
from pykit.ir import visit, Const, FunctionPass
class Verify(object):
"""Verify the current state of calls"""
def op_call(self, op):
assert not op.args[0].type.is_object, "Object calls must have been resolved"
class ExceptionCheck... | ContinuumIO/pykit | pykit/lower/lower_calls.py | Python | bsd-3-clause | 1,497 | [
"VisIt"
] | e9ffe9722188a3791e16fd418a1bda0631c44d4a2cbde293b1c9cf26a046cd36 |
from WebAppDIRAC.Lib.WebHandler import WebSocketHandler, asyncGen
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC import gConfig, gLogger
from DIRAC.Core.Utilities import Time, List
from DIRAC.Core.Utilities.CFG import CFG
from DIRAC.ConfigurationSystem.private.Modificator import Modificator
import json
i... | zmathe/WebAppDIRAC | WebApp/handler/ConfigurationManagerHandler.py | Python | gpl-3.0 | 25,480 | [
"DIRAC"
] | 2544edc1d94fa0b935a2636b60b530755b0aa89b74f1c0475485373b94fdb89f |
import matplotlib
matplotlib.use('Agg')
import sys
sys.path.append('../../')
import numpy as np
import scipy.stats
import matplotlib.pylab as plt
import os, sys
import geepee.aep_models as aep
import geepee.vfe_models as vfe
import geepee.ep_models as ep
import pdb
np.random.seed(42)
# We first define several utility... | thangbui/geepee | exps/gpssm/lin_cos_exp.py | Python | mit | 5,539 | [
"Gaussian"
] | cefb8d3c461dd565dc15bf70f72027079ced842bcf4bb3bb87d10b66f1aa9e62 |
# Copyright 2002 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
# python unittest framework
import unittest
import copy
# modules to be tested
from Bio.C... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_Crystal.py | Python | gpl-2.0 | 16,782 | [
"Biopython",
"CRYSTAL"
] | c5d1a892131039fea003774854871c624e369f4b7c71c5b2f29b263a416136bf |
#!/usr/bin/env python
# Import peak data into the meTRN structures!
import sys
import time
import optparse
import general
import numpy
import pickle
import pdb
import metrn
import modencode
import copy
import os
print "Command:", " ".join(sys.argv)
print "Timestamp:", time.asctime(time.localtime())
""" define functi... | claraya/meTRN | python/dataImporter.py | Python | mit | 11,052 | [
"BWA",
"Bowtie"
] | aebc049b5640c09666bec4f84410de6e6a82ceb2b40151b022b333838ea122ed |
# vim: ft=python fileencoding=utf-8 sts=4 sw=4 et:
# Copyright 2016-2020 Florian Bruhin (The Compiler) <mail@qutebrowser.org>
#
# This file is part of qutebrowser.
#
# qutebrowser is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free S... | The-Compiler/qutebrowser | qutebrowser/browser/browsertab.py | Python | gpl-3.0 | 41,845 | [
"VisIt"
] | 151429e823b56774e6dc191d54acaf6263a78649556908b570365a1cca207924 |
# $HeadURL: $
""" PEP
PEP ( Policy Enforcement Point ) is the front-end of the whole Policy System.
Any interaction with it must go through the PEP to ensure a smooth flow.
Firstly, it loads the PDP ( Policy Decision Point ) which actually is the
module doing all dirty work ( finding policies, running them... | Sbalbp/DIRAC | ResourceStatusSystem/PolicySystem/PEP.py | Python | gpl-3.0 | 6,634 | [
"DIRAC"
] | a6557f7d178ab17404a9c1bf7a3745be5e07b8edec7fc0e8dfdbca3faf3fac96 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# -----------------------------------------------------------------------------
# Copyright INRIA
# Contributors: Nicolas P. Rougier (Nicolas.Rougier@inria.fr)
#
# DANA is a computing framework for the simulation of distributed,
# asynchronous, numerical and adaptive models... | rougier/dana | examples/overt-attention.py | Python | bsd-3-clause | 7,064 | [
"Gaussian"
] | 48cf2e0ecf93c493ce6b75edaea1a469324f34e19b2ce205ea57d29990782354 |
"""
Gaussian Process Factor Analysis (GPFA) plots
---------------------------------------------
Visualizes transformed trajectories output from
:class:`elephant.gpfa.gpfa.GPFA`
.. autosummary::
:toctree: toctree/gpfa/
plot_dimensions_vs_time
plot_trajectories
plot_trajectories_spikeplay
plot_cumu... | INM-6/viziphant | viziphant/gpfa.py | Python | bsd-3-clause | 41,325 | [
"Gaussian",
"NEURON"
] | 17455cdc666848f18e4cc15e8e548b229cd336334bf0ce6868f93a497915b316 |
"""
https://leetcode.com/problems/subdomain-visit-count/
https://leetcode.com/submissions/detail/148073410/
"""
class Solution:
def subdomainVisits(self, cpdomains):
"""
:type cpdomains: List[str]
:rtype: List[str]
"""
dic = dict()
for cpdomain in cpdomains:
... | vivaxy/algorithms | python/problems/subdomain_visit_count.py | Python | mit | 1,110 | [
"VisIt"
] | 77d1638c4acf6bf735fdc6e4071c237b8e2323e30eb1b5f4d4923ebe54d69e38 |
# - coding: utf-8 -
# Copyright (C) 2008-2010 Toms Bauģis <toms.baugis at gmail.com>
# Dual licensed under the MIT or GPL Version 2 licenses.
# See http://github.com/tbaugis/hamster_experiments/blob/master/README.textile
import math
import datetime as dt
import gtk, gobject
import pango, cairo
import re
try:
im... | omaciel/billreminder | src/gui/widgets/graphics.py | Python | gpl-3.0 | 62,323 | [
"FLEUR"
] | 36676bdfe40602374d0db458d6678fc5896dd25e5e06f4be999ff85c57f5c742 |
#! /usr/bin/env python
from __future__ import absolute_import
from __future__ import print_function
from __future__ import division
##############################################################################
#
# Copyright (c) 2001, 2002 Zope Corporation and Contributors.
# All Rights Reserved.
#
# This software is s... | medularis/py-star | run_tests.py | Python | bsd-3-clause | 29,564 | [
"VisIt"
] | d361bb18723867b6e0b0a8bb5ff252056c6ce33e17c006cc7831fac7028e767f |
from __future__ import absolute_import
from unittest import TestCase, skip
from ccdproc import CCDData
from astropy.convolution import convolve, Gaussian1DKernel, Box1DKernel
from astropy.io import fits
from astropy.modeling import Model
from astropy.modeling import (models,
fitting)
impo... | soar-telescope/goodman | goodman_pipeline/core/tests/test_core.py | Python | bsd-3-clause | 93,118 | [
"Gaussian"
] | 8c1ff876834d2de1893b0341a249b83ae408c72efb93c5d7b4b45d2a9ace98ce |
from ase.db.core import connect
class IdCollisionError(Exception):
pass
| grhawk/ASE | tools/ase/db/__init__.py | Python | gpl-2.0 | 78 | [
"ASE"
] | 29b77e4554560a2360a3621dcd23c966f5f5b31f306386708b204347e3546558 |
# Copyright (c) 2012-2017 The ANTLR Project. All rights reserved.
# Use of this file is governed by the BSD 3-clause license that
# can be found in the LICENSE.txt file in the project root.
#/
# The basic notion of a tree has a parent, a payload, and a list of children.
# It is the most abstract interface for all th... | cikelengfeng/HTTPIDL | Sources/Compiler/antlr4/tree/Tree.py | Python | mit | 4,145 | [
"VisIt"
] | 9f372cbd5e82e0a7dbe9c81577fd7c26dd259a8864a8380edc2f1cb62f5ada13 |
'''
Created on Jan 5, 2011
@author: Dan Blankenberg
Code from the Galaxy project (http://galaxy.psu.edu)
Contains methods to transform sequence strings
'''
import string
from math import log10
from string import maketrans
# Quality score formats
SANGER_FORMAT = "sanger"
SOLEXA_FORMAT = "solexa"
ILLUMINA_FORMAT = "il... | genome-vendor/chimerascan | chimerascan/lib/seq.py | Python | gpl-3.0 | 5,019 | [
"Galaxy"
] | 922315f8061e2e2d508c673b656d5bcd96b7b09ed60eefc4cf8344d838f816e8 |
'''
user interface for viewing/editing photon optics layouts
'''
from numpy import sin, cos, pi, sqrt, log, array, random, sign
from numpy.linalg import norm
import numpy as np
import matplotlib.pyplot as plt
import scipy.integrate as integrate
#import matplotlib.animation as animation
from ocelot.optics.elements imp... | ocelot-collab/ocelot | ocelot/gui/optics.py | Python | gpl-3.0 | 7,089 | [
"CRYSTAL"
] | 79c8101a32d40431f6bb1487cec5fdc204d2fa43bf1994dda82a8861f698601c |
#!/usr/bin/env python
"Check documentation and input variables"
from __future__ import division, print_function, absolute_import #unicode_literals,
import sys
import os
import os.path
import glob
import re
def usage():
print("\n Usage: docchk \n ")
def abinit_test_generator():
def test_func(abenv):
"Chec... | jmbeuken/abinit | abichecks/scripts/docchk.py | Python | gpl-3.0 | 8,508 | [
"ABINIT"
] | 84a63192cf268487011fb5469d7f70a3c8a163367a4f179ac17d4ccc658fdcf0 |
'''
'''
from __future__ import print_function
import shutil
from os.path import dirname, exists, join, realpath, relpath
import os, re, subprocess, sys, time
import versioneer
# provide fallbacks for highlights in case colorama is not installed
try:
import colorama
from colorama import Fore, Style
def ... | Ziqi-Li/bknqgis | bokeh/_setup_support.py | Python | gpl-2.0 | 15,276 | [
"GULP"
] | 85a11e7e94e51856b150f829b5ead504ce100e8bdf20b24af701e4d7bf9168f3 |
########################################################################
# $HeadURL $
# File: ListTestCase.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2011/01/17 08:17:58
########################################################################
""".. module:: ListTestCase
Test cases for DIRAC.Core.Utilities.L... | Sbalbp/DIRAC | Core/Utilities/test/ListTestCase.py | Python | gpl-3.0 | 5,481 | [
"DIRAC"
] | 7437d5212a9da7f376c71cb92848872581be7a113e300063bf6e99dcefcc2981 |
#!/usr/bin/env python
"""
Artificial Intelligence for Humans
Volume 3: Deep Learning and Neural Networks
Python Version
http://www.aifh.org
http://www.jeffheaton.com
Code repository:
https://github.com/jeffheaton/aifh
Copyright 2015 by Jeff Heaton
Licensed under the Apache License, V... | trenton3983/Artificial_Intelligence_for_Humans | vol3/vol3-python-examples/lib/aifh/rbf_network.py | Python | apache-2.0 | 4,920 | [
"Gaussian",
"VisIt"
] | fe4f72c81566284170429661905f91d8e114899205d0bc69da196385d7f2f021 |
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