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# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import os, subprocess
import dialog
from io import BytesIO
from zeroinstall import _
from zeroinstall.injector import model, selections, qdom
from gui import gobject
XMLNS_0COMPILE = 'http://zero-install.sourceforg... | slovenwd/0install | zeroinstall/0launch-gui/compile.py | Python | lgpl-2.1 | 3,264 | [
"VisIt"
] | 99211d9da3dfa1738754216210f5bc175a86ed7dff4934b2c1a29c63590bc183 |
import cv2
import numpy as np
import sys
import argparse
from os.path import splitext
from os import listdir, makedirs, rename
#cv2.CV_64F, cv2.CV_8UC3
color_mode=cv2.CV_8UC1
#8UC1
def none(img, *args):
return img
def avg(img,x):
return cv2.blur(img,(x,x))
def gaussian(img,x):
return cv2.GaussianBlur(im... | OAkyildiz/dataset_tools | bitmask_tool.py | Python | mit | 13,414 | [
"Gaussian"
] | 5f9251cf4ddbbe2f4494e27888951acb54496743e0fb0001d59d4bbd1055f5fb |
# coding: utf-8
"""
This module provides objects for extracting timing data from the ABINIT output files
It also provides tools to analye and to visualize the parallel efficiency.
"""
from __future__ import unicode_literals, division
import sys
import collections
import numpy as np
from six.moves import zip
from mon... | rousseab/pymatgen | pymatgen/io/abinitio/abitimer.py | Python | mit | 24,590 | [
"ABINIT",
"pymatgen"
] | 16d23032a0fe29c4c7d42acf6f62f71dc3cc07c42ba6bbdb79a0aa37c7ecddae |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2014--, tax-credit development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | BenKaehler/short-read-tax-assignment | setup.py | Python | bsd-3-clause | 926 | [
"scikit-bio"
] | 8e996870218706d8f8e76fb0c2ec62a707976eda96c26dbfe281e73391c40a6c |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageSobel3D(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.v... | nagyistoce/devide | modules/vtk_basic/vtkImageSobel3D.py | Python | bsd-3-clause | 487 | [
"VTK"
] | 9f6429a461ccf08169a60e6b879f3de08e1a52417ad32f4dd0354a6cdc85f380 |
# pylint: disable=C0111
# pylint: disable=W0621
import urllib
from lettuce import world
from django.contrib.auth.models import User, Group
from student.models import CourseEnrollment
from xmodule.modulestore.django import modulestore
from xmodule.modulestore import ModuleStoreEnum
from xmodule.contentstore.django impo... | wwj718/murp-edx | common/djangoapps/terrain/course_helpers.py | Python | agpl-3.0 | 2,532 | [
"VisIt"
] | 789ff6860f87b32c1b9981eca0bc4e02709f9df1d3a84a74cb7af3cbef7fed7f |
from math import radians, sin, cos
from ase import Atom, Atoms
from ase.neb import NEB
from ase.constraints import FixAtoms
from ase.calculators.emt import EMT
from ase.optimize import QuasiNewton, BFGS
from ase.visualize import view
# http://jcp.aip.org/resource/1/jcpsa6/v97/i10/p7507_s1
doo = 2.74
doht = 0.957
doh ... | suttond/MODOI | ase/test/emt_h3o2m.py | Python | lgpl-3.0 | 2,096 | [
"ASE"
] | 1921e00156d7b40d5fb2d562ef6381e1b5e7dadbe12389a412cd69f637184451 |
# -*- coding: iso-8859-1 -*-
'''Module containing and processing all orbkit options.'''
lgpl = '''ORBKIT
Gunter Hermann, Vincent Pohl, Lukas Eugen Marsoner Steinkasserer, Axel Schild, and Jean Christophe Tremblay
Institut fuer Chemie und Biochemie, Freie Universitaet Berlin, 14195 Berlin, Germany
This file is part o... | orbkit/orbkit | orbkit/options.py | Python | lgpl-3.0 | 22,643 | [
"GAMESS",
"Gaussian",
"Mayavi",
"Molpro",
"VMD",
"cclib"
] | d27ca159645f79e5db15972d2de142b30c5a07f610c57c29921fe1da1ed6e07a |
"""Tests against live services.
*** SKIPPED BY DEFAULT ***
These tests won't normally be run, as part of the main test suite but are run by
our hudson instance to tell us should Yahoo's API change in some way that will
break python-yql.
Note to end-users: These tests are dependent on defining a secrets file with API... | allanice001/RJ45 | lib/yql/tests/test_live_services.py | Python | gpl-2.0 | 5,705 | [
"VisIt"
] | c2a9225e8250f1a37c2e7d19436a37e1d0de9af491bd1ba06353de23f666446b |
#!/usr/bin/python
# (c) 2017, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# most of it copied from AWX's scan_packages module
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': ... | le9i0nx/ansible | lib/ansible/modules/packaging/os/package_facts.py | Python | gpl-3.0 | 7,114 | [
"Brian"
] | 142663de42f65089ac7ad6397a05261b303917832f9456403fc40bb7d2144c95 |
# Copyright (c) 2003-2013 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or ... | tianzhihen/python-mode | pymode/libs/pylama/lint/pylama_pylint/pylint/checkers/exceptions.py | Python | lgpl-3.0 | 13,754 | [
"VisIt"
] | cefe7b78873eb3ede25fc829429b70f16b23a6628446891da883589d9e36ee91 |
# Authors: John Dennis <jdennis@redhat.com>
#
# Copyright (C) 2011 Red Hat
# see file 'COPYING' for use and warranty information
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version... | hatchetation/freeipa | ipapython/log_manager.py | Python | gpl-3.0 | 62,297 | [
"VisIt"
] | 919424895f3f922965d04c3f647bd5377a08e6ba895fa143cea0d06770143c92 |
import ast
from viper.exceptions import (
InvalidLiteralException,
NonPayableViolationException,
StructureException,
TypeMismatchException,
VariableDeclarationException,
)
from viper.function_signature import (
FunctionSignature,
VariableRecord,
)
from viper.signatures.event_signature impor... | NedYork/viper | viper/parser/parser.py | Python | mit | 52,311 | [
"VisIt"
] | 1ca32c163a6f1984a105a3abe54de8518f106918bf14b0f427a5c0561895ef6a |
"""
:Author: Engelbert Gruber
:Contact: grubert@users.sourceforge.net
:Revision: $Revision: 21817 $
:Date: $Date: 2005-07-21 22:39:57 +0200 (Thu, 21 Jul 2005) $
:Copyright: This module has been placed in the public domain.
LaTeX2e document tree Writer.
"""
__docformat__ = 'reStructuredText'
# code contributions from... | baoboa/Crystal-Space | docs/support/docutils/writers/latex2e.py | Python | lgpl-2.1 | 75,964 | [
"VisIt"
] | 70c025f691c8bf8a99c346ba32ad346ccf5e8198aef28c51e77204e29f874432 |
#!/usr/bin/env python
##
## See COPYING file distributed along with the ncanda-data-integration package
## for the copyright and license terms
##
"""
ncanda_quality_control_script
======================
This script checks the quality of the data for the NCANDA Project on REDCap.
Call script on command line.
Example ... | sibis-platform/ncanda-data-integration | scripts/reporting/ncanda_quality_control_script.py | Python | bsd-3-clause | 14,366 | [
"VisIt"
] | 62a3534360b32b301d90693dfc7129136556c2d6ab33025d35044a58adf3790f |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | espressomd/espresso | testsuite/scripts/samples/test_dpd.py | Python | gpl-3.0 | 1,207 | [
"ESPResSo"
] | 871872ce131487534a74fd5d0f224537d9531d064c312999d21350c368be8b74 |
'''
This script performs a grid search for the current parameters that best match the data
from Hausser and Clark (1997)
'''
import datetime
import os
import gc
import multiprocessing
import itertools
from brian import *
import sys
sys.path.append('../../')
from MLI_PKJ_net import *
import cPickle
import time
set_globa... | blennon/MLI_PKJ_net | MLI_PKJ_net/parameter_search/MLI_gamma_current_param_sweep.py | Python | mit | 2,101 | [
"Brian"
] | 2a33f0b2509508ccecbb0c8b002a630f72cf2d66942bf70ce5ba95baaf507736 |
"""
SALTS XBMC Addon
Copyright (C) 2014 tknorris
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
T... | JamesLinEngineer/RKMC | addons/plugin.video.salts/scrapers/2ddl_scraper.py | Python | gpl-2.0 | 8,509 | [
"ADF"
] | b57d1a58c8309e74cf46d7d7696453ee63a0d9bf1b84a9e64fd5cc8ad1538e33 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# The MIT License (MIT)
#
# Copyright (c) 2014 Siyuan Ren (netheril96@gmail.com)
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restr... | vitalyisaev2/autojsoncxx | autojsoncxx.py | Python | mit | 19,692 | [
"VisIt"
] | 2b15add52f63865d9a6f94198c4665ab6d55ec6da6e4b62147fb40fb095a7eaf |
# $Id$
#
# Copyright (C) 2001-2011 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" SMARTS definitions ... | strets123/rdkit | rdkit/Chem/MACCSkeys.py | Python | bsd-3-clause | 11,266 | [
"RDKit"
] | 55b48989f78c99c587695cd1e9f6467bd744d644ede44285b79094175bd12bbd |
#!/usr/bin/env python
# QAPI texi generator
#
# This work is licensed under the terms of the GNU LGPL, version 2+.
# See the COPYING file in the top-level directory.
"""This script produces the documentation of a qapi schema in texinfo format"""
from __future__ import print_function
import re
import qapi.common
MSG_F... | marioli/qemu | scripts/qapi/doc.py | Python | gpl-2.0 | 9,156 | [
"VisIt"
] | 538f37701d9463d5da52f9b08ebe04ba40e07c87556bc123fa10075623ddf668 |
# Author: Prabhu Ramachandran <prabhu [at] aero . iitb . ac . in>
# Copyright (c) 2008, Enthought Inc.
# License: BSD Style.
import unittest
from pkg_resources import resource_filename
from traits.api import Str, Int, Bool
from apptools.preferences.api import set_default_preferences
from apptools.preferences.api impo... | dmsurti/mayavi | mayavi/tests/test_preferences_mirror.py | Python | bsd-3-clause | 2,899 | [
"Mayavi"
] | 7ef9dad00b7a1728ffd3b2f687d1c5115ed88ec380ce3293a8341ec25cfff42f |
<<<<<<< HEAD
<<<<<<< HEAD
# Copyright (c) 2012 Google Inc. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import collections
import os
import gyp
import gyp.common
import gyp.msvs_emulation
import json
import sys
generator_supports_multiple_t... | ArcherSys/ArcherSys | node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/generator/dump_dependency_json.py | Python | mit | 8,444 | [
"VisIt"
] | a702b60ec96a88a2f8dbd514e33559eb121a0b82f54b2b499a150c1a2579327c |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPispino(PythonPackage):
"""PISPINO (PIpits SPIN-Off tools)."""
homepage = "https://... | rspavel/spack | var/spack/repos/builtin/packages/py-pispino/package.py | Python | lgpl-2.1 | 732 | [
"Bioconda"
] | f0b80004b9472b8828280ab20d5f3c781ce61364dcc4ca08aa6792540de5983d |
"""
NetCDF reader/writer module.
This module implements the Scientific.IO.NetCDF API to read and create
NetCDF files. The same API is also used in the PyNIO and pynetcdf
modules, allowing these modules to be used interchangebly when working
with NetCDF files. The major advantage of ``scipy.io.netcdf`` over other
modu... | grhawk/ASE | tools/ase/io/pupynere.py | Python | gpl-2.0 | 21,220 | [
"NetCDF"
] | b3b9e7080b68124736ebda9af659fd7efd4067ab1af88f093a34343b551bf646 |
#-*- coding:Utf-8 -*-
"""
.. currentmodule:: pylayers.antprop.antenna
This module handles antennas
An antenna can be loaded from various file formats among
+ .vsh2
+ .vsh3
+ .sh2
+ .sh3
+ .mat
+ .trx
Antenna derives from Pattern
Examples
--------
.. plot::
:include-source:
>>> import matplotlib.pyplot a... | buguen/pylayers | pylayers/antprop/antenna.py | Python | lgpl-3.0 | 170,791 | [
"Gaussian",
"Mayavi"
] | e86422456c6ced663881ed6a56ace61e077bbf3655a6c3906aae410005e37b23 |
'''
PMDL Export Blender Addon
By Jack Andersen <jackoalan@gmail.com>
This file defines the `pmdl_draw_general` class to generate vertex+index
buffers and mesh arrays to draw them. `PAR1` files also include bone-weight
coefficients per-vertex for vertex-shader-driven skeletal evaluation.
'''
import struct
import bpy
... | jackoalan/PSPL | Extensions/PMDLFormat/Blender/io_pmdl_export/pmdl_draw_general.py | Python | mit | 16,891 | [
"VisIt"
] | 6ff8abb8d2e722f9afca00298cdb31d919f6383aef56dc7e9b77a0a6d868eaa5 |
from distutils.core import setup
setup(
name='Glider Singleton Publishing Service NetCDF Subscriber',
version='1.0',
author='Michael Lindemuth',
author_email='mlindemu@usf.edu',
packages=['gsps_netcdf_subscriber'],
scripts=[
'gsps_netcdf_subscriber/gsps_netcdf_sub.py'
]
)
| USF-COT/gsps_netcdf_subscriber | setup.py | Python | mit | 310 | [
"NetCDF"
] | e4bade8ca536782e12b8310907a50ed495e9426ad9fa20f9202d39beee638afa |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding: utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | kain88-de/mdanalysis | package/MDAnalysis/topology/DMSParser.py | Python | gpl-2.0 | 6,420 | [
"MDAnalysis"
] | f3f5166ca0ffa34e14c27a8eed9883b90056fbee204616ae08b1bf248df91cf0 |
"""Contains Timing and Timer classes"""
# timing.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
import time
class Timing(object):
"""... | jabdoa2/mpf | mpf/system/timing.py | Python | mit | 6,667 | [
"Brian"
] | bd129bbf8f297ec41f7c265deafe6a60f8cd7fc9212c5798460a2d133ff742a6 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
'''
Miscellaneous algorithms
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname(os.path.realpath(__file__))
>>> datadir = os.path.realpath(... | sgiavasis/nipype | nipype/algorithms/misc.py | Python | bsd-3-clause | 51,523 | [
"Gaussian"
] | 744b12e64c1accfa78461ad12cfc95c50fddbc2b256f966110971459d2660ca0 |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
from __future__ import absolute_import, print_function
import io
import re
from glob import glob
from os.path import basename
from os.path import dirname
from os.path import join
from os.path import splitext
from setuptools import find_packages
from setuptools import se... | glaunay/pyproteins | setup.py | Python | gpl-3.0 | 1,434 | [
"Biopython"
] | 2d5349b40f6a44d74db3e85f8f6ce9ba0419970c61d8f46b25a9eb47d9a880c4 |
from sys import stdout
import simtk.openmm as mm
import simtk.openmm.app as app
from simtk import unit as u
pdb = app.PDBFile("/home/kyleb/src/openmm/openmm/wrappers/python/simtk/openmm/app/data/tip3p.pdb")
forcefield = app.ForceField('iamoeba.xml')
system = forcefield.createSystem(pdb.topology, nonbondedMethod=app.P... | kyleabeauchamp/HMCNotes | code/old/build_iamoeba_box.py | Python | gpl-2.0 | 1,177 | [
"OpenMM"
] | d88c6f2eeb12b581fcd3a6a95d321c92f95bf27eec353afabcd46ad96760307e |
"""
Convenience routines for performing common operations.
@since: 0.28
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
import os, sys
from zeroinstall import support, SafeException, logger
from zeroinstall.support import... | timdiels/0install | zeroinstall/helpers.py | Python | lgpl-2.1 | 7,229 | [
"VisIt"
] | fdb94b4aca660b7c6843aada12c23cfd5d6f516ad94fd7773df1fcec7a1c2609 |
#!/usr/bin/env python
# Copyright 2017-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/cc/kccsd_t_rhf.py | Python | apache-2.0 | 28,756 | [
"PySCF"
] | f4084bf84c601ec0955b31a1067b328d91279f17d811fe352d215fd874589d1a |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
# CREATED:2015-02-14 19:13:49 by Brian McFee <brian.mcfee@nyu.edu>
'''Unit tests for time and frequency conversion'''
import warnings
import os
try:
os.environ.pop('LIBROSA_CACHE_DIR')
except KeyError:
pass
import librosa
import numpy as np
from nose.tools impor... | r9y9/librosa | tests/test_time_frequency.py | Python | isc | 10,703 | [
"Brian"
] | 518aa611f278962e81795b89ff1d74ace8030db5b2839db3a9142fab80e42f3a |
"""
Gaussian expansion of distances
"""
import numpy as np
import tensorflow as tf
from tensorflow.keras.layers import Layer
class GaussianExpansion(Layer):
"""
Simple Gaussian expansion.
A vector of distance [d1, d2, d3, ..., dn] is expanded to a
matrix of shape [n, m], where m is the number of Gauss... | materialsvirtuallab/megnet | megnet/layers/featurizer/_gaussian_expansion.py | Python | bsd-3-clause | 1,686 | [
"Gaussian"
] | ef27d1fcba6670e77af4cb091e0251d1a2c6919e1fd609a5276e78114be8acb7 |
from __future__ import with_statement
import imp
import inspect
import os
import sys
from attest import ast, statistics
from attest.codegen import to_source, SourceGenerator
__all__ = ['COMPILES_AST',
'ExpressionEvaluator',
'TestFailure',
'assert_hook',
'AssertTra... | dag/attest | attest/hook.py | Python | bsd-2-clause | 9,729 | [
"VisIt"
] | 07157ca0d6cb2bd7a81f2587476859dc1b81167054cb403cc355dfec2bcac985 |
"""
This examples shows how many lines can be grouped together in a single
object, for convenience and efficiency.
We want to plot a large number of lines. We could use mlab.plot3d for
this, but it will create an object for each line, this will be
inefficient. This example shows how to create one object comprised of
m... | dmsurti/mayavi | examples/mayavi/mlab/plotting_many_lines.py | Python | bsd-3-clause | 2,777 | [
"Mayavi"
] | 08f2a52ecde61f8a6fe49e4e537ace47444e5299b62059c15daf3c1c7528906d |
__all__ = ['resample_image',
'resample_image_to_target']
import os
from ..core import ants_image as iio
from .. import utils
def resample_image(image, resample_params, use_voxels=False, interp_type=1):
"""
Resample image by spacing or number of voxels with
various interpolators. Works wit... | ANTsX/ANTsPy | ants/registration/resample_image.py | Python | apache-2.0 | 5,955 | [
"Gaussian"
] | 20355fdd249363f307cd9f708423f3f9886eea7fc23565a64696ede45a1fece1 |
# (C) British Crown Copyright 2010 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | Jozhogg/iris | lib/iris/tests/test_cf.py | Python | lgpl-3.0 | 14,692 | [
"NetCDF"
] | bd1c2e525488234796fc18e42d6762630126702f581624e0ffb63e6de2b7f62b |
'''
Created on Jun 2, 2011
@author: mkiyer
'''
import sys
import logging
import argparse
import pysam
# local imports
from chimerascan.lib import config
def sam_to_bam(input_sam_file, output_bam_file):
samfh = pysam.Samfile(input_sam_file, "r")
bamfh = pysam.Samfile(output_bam_file, "wb", template=samfh)
... | tectronics/chimerascan | chimerascan/pipeline/sam_to_bam.py | Python | gpl-3.0 | 937 | [
"pysam"
] | 9d62dd0a45f8bfe34dc857697a22187f0f0bda1ed175130f5973ece93d629238 |
"""Visit and parse objdump."""
from scoff.ast.visits import ASTVisitor
from hdltools.binutils.instruction import AsmInstruction
from hdltools.binutils.function import AsmFunction
class AsmDumpPass(ASTVisitor):
"""Visit objdump output."""
def __init__(self):
"""Initialize."""
self._visited = ... | brunosmmm/hdltools | hdltools/binutils/passes.py | Python | mit | 1,596 | [
"VisIt"
] | 23bf1b985455e385918128ffa50c8ecb29c3fc7f0e773d8262a056cf4801fdd5 |
import unittest
from nose.tools import * # PEP8 asserts
from tests.base import OsfTestCase
from tests.test_features import requires_search
from tests.factories import (
UserFactory, ProjectFactory, NodeFactory,
UnregUserFactory, UnconfirmedUserFactory
)
from framework.auth.core import Auth
from website imp... | himanshuo/osf.io | tests/test_elastic.py | Python | apache-2.0 | 17,890 | [
"Brian"
] | 0feb838d7a898fe05fd185c4dbbaad92a7eb393938b4d1c17319847170873553 |
"""
This is a simple script that verifies several ways of accessing numpy arrays
and ensures that their memory is properly cleaned.
"""
import pytest
from .addons import using
import numpy as np
import psi4
pytestmark = pytest.mark.quick
# If it's too small, something odd happens with the memory manager
mat_size =... | ashutoshvt/psi4 | tests/pytests/test_np_views.py | Python | lgpl-3.0 | 2,472 | [
"Psi4"
] | 56890db706f4e56d875af422362f190e94deece9bc733dade5c5d6d6abee7b6f |
# Load python packages
import re, sys, math
from collections import OrderedDict
# Load Moose packages
from FactorySystem import MooseObject
from ..slides import RemarkSlide, SlideWarehouse
##
# Base class for markdown slide generation
class RemarkSlideSet(MooseObject):
##
# Defines the available properties for t... | danielru/moose | python/PresentationBuilder/slidesets/RemarkSlideSet.py | Python | lgpl-2.1 | 10,006 | [
"MOOSE"
] | 304a116d331c2a54dd782fdcd606d6f1882946800a5f1ec484ae1fb5088a8dd2 |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright 2012 Nebula, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | neumerance/deploy | horizon/base.py | Python | apache-2.0 | 29,640 | [
"VisIt"
] | 3a95eb66a173f150958a38979144f69924c15648e752bcb5e63910f47fcee377 |
import numpy as np
import cv2
import glob
import matplotlib.pyplot as plt
from sklearn.linear_model import LinearRegression
"""Transformation Pipeline"""
calibration_image_src = 'camera_cal/calibration*.jpg'
FONT_SIZE = 200
def calibrate_camera(calibration_image_src = calibration_image_src, ):
# prepare object ... | dzorlu/sdc | advanced_lane_detection/image_transformation.py | Python | mit | 11,694 | [
"Gaussian"
] | db28eee97d4588cfed91e06440cfd9ffbb43530599fe9f7dd3f97fb09023b5a4 |
# Lint as: python3
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | jhseu/tensorflow | tensorflow/python/eager/gradient_input_output_exclusions.py | Python | apache-2.0 | 12,367 | [
"VisIt"
] | b415910a5c2b54bff20ee008d12e90b235b94dfb97e380fd9e708a231110a52c |
#
# Copyright (c) 2009-2015, Jack Poulson
# All rights reserved.
#
# This file is part of Elemental and is under the BSD 2-Clause License,
# which can be found in the LICENSE file in the root directory, or at
# http://opensource.org/licenses/BSD-2-Clause
#
import El
n0 = 50
n1 = 50
display = False
worldRank = E... | birm/Elemental | examples/interface/LAV.py | Python | bsd-3-clause | 2,954 | [
"Gaussian"
] | 7c3d6de37955d3338774ce5d23410cf145b1e207a437378b01a2e1b3055bd437 |
#
# ----------------------------------------------------------------------------------------------------
#
# Copyright (c) 2007, 2015, Oracle and/or its affiliates. All rights reserved.
# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER.
#
# This code is free software; you can redistribute it and/or modify ... | smarr/mxtool | mx_gate.py | Python | gpl-2.0 | 17,717 | [
"VisIt"
] | 885c1779d18f87f59c7b9c962b99bda9865b2420fb67d213dff338192dafb129 |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/workspace.py | Python | gpl-2.0 | 18,783 | [
"VisIt"
] | 28a8b804ff34b3c1eb99941018c5d66b32b729879ee466685827885e9edcc50c |
"""Installers for programming language specific libraries.
"""
import os
from fabric.api import env, cd, settings
from cloudbio import fabutils
from cloudbio.custom import shared
def r_library_installer(config):
"""Install R libraries using CRAN and Bioconductor.
"""
with shared._make_tmp_dir() as tmp_dir... | heuermh/cloudbiolinux | cloudbio/libraries.py | Python | mit | 3,405 | [
"Bioconductor"
] | d7aa0eb6652e7e6f5af97e1753bef49728b04ebbdb810d7596016a900d0031be |
# (C) British Crown Copyright 2014 - 2017, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | LukeC92/iris | lib/iris/tests/unit/fileformats/netcdf/test__load_aux_factory.py | Python | lgpl-3.0 | 6,986 | [
"NetCDF"
] | acd1c66885dcd5bfc4942d69d00eda0e4ce0a672bc422ed9a251a5a6905aac34 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/bwa/package.py | Python | lgpl-2.1 | 2,823 | [
"BWA"
] | 428f03021eb543fd94676f2ba61375a571e8c8c0dafb39d5b6cc2e249bef4d32 |
from Module import AbstractModule
class Module(AbstractModule):
def __init__(self):
AbstractModule.__init__(self)
def run(
self, network, antecedents, out_attributes, user_options, num_cores,
out_path):
import os
from genomicode import parallel
from genomicode i... | jefftc/changlab | Betsy/Betsy/modules/convert_sai_to_sam_folder.py | Python | mit | 5,144 | [
"BWA"
] | 3deaf3c93fb59c4f715af5197a77b85044f012679709f3d6b2894d0e79d5364e |
#!/Library/Frameworks/Python.framework/Versions/2.7/bin/python
# -*- coding: utf-8 -*-
import os
import json
import urllib2
import subprocess
name = ''
email = ''
options = { 'developer': '', 'android': '', 'ios': '', 'designer': '', 'web' : '',
'sublime': '', 'vim': '', 'zsh': '',
'animations... | Aerolab/setup | setup.py | Python | mit | 12,816 | [
"GULP"
] | c45b08c248a51645427caa5f349a22856b042f6994bce6f31b00a47040b3e355 |
"""
This is a module for XPS analysis. It is modelled after the Galore package (https://github.com/SMTG-UCL/galore), but
with some modifications for easier analysis from pymatgen itself. Please cite the following original work if you use
this::
Adam J. Jackson, Alex M. Ganose, Anna Regoutz, Russell G. Egdell, Davi... | materialsproject/pymatgen | pymatgen/analysis/xps.py | Python | mit | 2,915 | [
"Gaussian",
"pymatgen"
] | 2b5b5f9a36b11496f2d9d64aa52a1007ab46506aa3ab10e06518989d44929a8c |
# -*- coding: utf-8 -*-
from datetime import datetime, timedelta
from django.conf import settings
from django.core import mail
from django.core.files.storage import default_storage as storage
from django.test.utils import override_settings
from django.utils import translation
from unittest import mock
import pytest
i... | kumar303/addons-server | src/olympia/reviewers/tests/test_utils.py | Python | bsd-3-clause | 53,663 | [
"VisIt"
] | 173b1dafe2da373783a68d0dae04844be7469ee786c3cbb49efe4e6bda653ff4 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | pmghalvorsen/gramps_branch | gramps/plugins/quickview/filterbyname.py | Python | gpl-2.0 | 17,381 | [
"Brian"
] | ea2e621a5d48767c86c54d7823cd03258858854342e322a7a54a0f3fab65e3bb |
#
# This file is part of PyOLab. https://github.com/matsselen/pyolab
# (C) 2017 Mats Selen <mats.selen@gmail.com>
#
# SPDX-License-Identifier: BSD-3-Clause
# (https://opensource.org/licenses/BSD-3-Clause)
#
# system stuff
import os
import sys
import time
from Tkinter import * #This interface a... | matsselen/pyolab | AnalogExample/userExample.py | Python | bsd-3-clause | 3,649 | [
"exciting"
] | 001712a5ebd29c0f15d49b78eb9bfb91c0f16688dbb5b6b8d59286fa6b95408c |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | nburn42/tensorflow | tensorflow/contrib/timeseries/python/timeseries/state_space_models/kalman_filter.py | Python | apache-2.0 | 16,368 | [
"Gaussian"
] | 218dca56297392b41c8929a781fff431217b44aa8ab58fa2537361204567474d |
#!/usr/bin/env python
#
# Copyright 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | jamslevy/gsoc | thirdparty/google_appengine/google/appengine/tools/appcfg.py | Python | apache-2.0 | 74,994 | [
"VisIt"
] | ec121a83a1969477ba256d66da4b9e2ab977e27d7f81075523217e104a89b88a |
import eva
import eva.tests
import eva.tests.schemas
import eva.adapter
import eva.exceptions
import eva.job
from unittest import mock
import httmock
import datetime
class TestFimexAdapter(eva.tests.BaseTestAdapter):
adapter_class = eva.adapter.FimexFillFileAdapter
config_ini = \
"""
[adapter]
fimex_fill_fil... | metno/EVA | eva/tests/adapters/test_fimex_fill_file.py | Python | gpl-2.0 | 2,649 | [
"NetCDF"
] | 95e00f801860c0b1a1056974bd97fb0f46cfbc9c9985e6adf698d4d8d7bdf27c |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=80 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# -------------------------------------------------------... | alisonken1/openlp-projector-2.0 | openlp/projectors/xml_parser.py | Python | gpl-2.0 | 9,287 | [
"Brian"
] | 69e2552cc8050460a25fae9d89083d4e443c7c60d66f2bc047201fc4b27387ed |
# import asyncio
import sys
from verbs import VisitPy2 as Visit
# visit = Visit('http://192.168.59.100:8008/v1/app')
#visit = Visit('http://192.168.59.200:8080/v1')
visit = Visit('http://127.0.0.1:8080/v1')
headers = { 'username':'user1',
'password':'self.test_account_pw1',
'content-type': ... | pa2515-group2/server | server/verb.py | Python | mit | 3,201 | [
"VisIt"
] | f0a2a9ff1a7f2eac57974bbf6ed348d34354c58d0a7202e1dd9ca10622915b0e |
#!coding:utf-8
# Transmageddon
# Copyright (C) 2009 Christian Schaller <uraeus@gnome.org>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Library General Public
# License as published by the Free Software Foundation; either
# version 2 of the License, or (at you... | linuxdeepin/deepin-media-player | src/format_conv/transmageddon.py | Python | gpl-3.0 | 64,931 | [
"DIRAC"
] | 88e7ad072fa35f82950612e330d8bbd57796600d59de5d74dd1ddef63ed7ddc8 |
import numpy as np
from numpy.testing import assert_allclose
import hyperspy.api as hs
from hyperspy.models.model1d import Model1D
from hyperspy.misc.test_utils import ignore_warning
class TestPowerLaw:
def setup_method(self, method):
s = hs.signals.Signal1D(np.zeros(1024))
s.axes_manager[0].of... | CodeMonkeyJan/hyperspy | hyperspy/tests/model/test_components.py | Python | gpl-3.0 | 13,325 | [
"Gaussian"
] | e83f13e15de69daa9060ba63697b88a7c1a3b56776d864c1717eb46ab8ef6fbf |
#!/usr/bin/env python
from ase_utils import symbol_number, symnum_to_sym
import numpy as np
import re
import os
import sys
import pickle
from scipy.integrate import trapz
from collections import OrderedDict
int_keys = ("num_bands", "num_wann", 'bands_num_points',
"fermi_surface_num_points", "num_iter", "nu... | mailhexu/pyDFTutils | resource/phonon_ana/pyFA/wannier.py | Python | lgpl-3.0 | 22,509 | [
"ASE",
"Wannier90"
] | 9b898795f10a6abbf47e4883d45dd59fcfb28a34f0f66301cd832a7485d1051e |
# -*- coding: utf-8 -*-
"""
Models used to implement SAML SSO support in third_party_auth
(inlcuding Shibboleth support)
"""
import json
import logging
import re
from config_models.models import ConfigurationModel, cache
from django.conf import settings
from django.contrib.sites.models import Site
from django.core.e... | cpennington/edx-platform | common/djangoapps/third_party_auth/models.py | Python | agpl-3.0 | 37,165 | [
"VisIt"
] | 4f54395286e130fd1b0b390d75f76ca583aeb07c70e8a0be1ce1e5f9becfdc8a |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Scalr/libcloud | libcloud/compute/drivers/azure.py | Python | apache-2.0 | 113,059 | [
"VisIt"
] | 35dd7dc1f12e283d11056e8abe9d1db1addd364f0a6356ea77ccb5d13921db4c |
#!/usr/local/www/vamps/software/python/bin/python
# -*- coding: utf-8 -*-
#
# See README file for details. Send your questions / remarks to "A. Murat Eren", <meren / mbl.edu>
import sys
try:
import Levenshtein
except:
print '''
You need Levenshtein module installed to run this software.
Here is a fa... | avoorhis/mbl_sequencing_pipeline | pipeline/anchortrimming_mbl.py | Python | gpl-2.0 | 10,632 | [
"Gaussian"
] | f871adf8c38c0e10a76c9ea24b41afebffbd1d11efdcd179e8b4f0253fbebd7d |
from __future__ import print_function
import warnings
from copy import copy
import numpy as np
import netCDF4 as nc
from .constants import Ha2eV
from .util import create_directory, formatted_array_lines
from .qptanalyzer import QptAnalyzer
from .mpi import MPI, comm, size, rank, master_only, mpi_watch, i_am_maste... | jmbeuken/abinit | scripts/post_processing/ElectronPhononCoupling/ElectronPhononCoupling/core/epcanalyzer.py | Python | gpl-3.0 | 38,739 | [
"ABINIT",
"NetCDF"
] | ec0a1f700f7281a43ad9d77ad979c9d00647c9e83928aa453e0c8e01387d8e25 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Tim G L Lyons
# Copyright (C) 2012 Michiel D. Nauta
#
# This program is free software; you can redistri... | sam-m888/gramps | gramps/plugins/tool/check.py | Python | gpl-2.0 | 129,173 | [
"Brian"
] | 0925c50b059bba12a3aba9425d0e150286d37fa1b41573fbdb175d185449163d |
# Copyright 2020 Makani Technologies LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | google/makani | config/m600/control/hover.py | Python | apache-2.0 | 47,054 | [
"exciting"
] | 1b1d966b6aad6cafeb987af72053123b28ee16f627b0b89723633d8aa3043eba |
#!/usr/bin/env python3
# Script by JK
# Extracts targeted contigs from a multi-FASTA file eg. draft genome assembly
import subprocess
import os
import sys
import shutil
from Bio.Blast.Applications import NcbiblastnCommandline
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Se... | kwongj/contig-puller | contig-puller.py | Python | gpl-2.0 | 6,533 | [
"BLAST"
] | 768ec0db444aa8c20a672f3327835ab2a4390ef1738ed259de9528e03f86b5d3 |
"""
Created on May 17, 2012
@author: nmvdewie
"""
import unittest
import rmgpy.qm.qmtp as qm
import rmgpy.qm.parsers as pars
import os
import rmgpy.molecule as mol
import rmgpy.qm.calculator as calc
from rmgpy.thermo import ThermoData
import re
class Test(unittest.TestCase):
def testMOPAC_PM3_Parser(self):
... | faribas/RMG-Py | unittest/qm/parserTest.py | Python | mit | 2,113 | [
"MOPAC",
"cclib"
] | cdbe2995b79c8dbde955733aed8bfcb0c3bf8ebfcb8b232db2e291a2d5a7b035 |
#! /usr/bin/env python
'''Test of text objects
'''
from OpenGLContext import testingcontext
BaseContext = testingcontext.getInteractive()
from OpenGL.GL import *
from OpenGLContext.arrays import *
import string, time, sys, os
import logging
log = logging.getLogger( __name__ )
from OpenGLContext.scenegraph.basenodes im... | stack-of-tasks/rbdlpy | tutorial/lib/python2.7/site-packages/OpenGLContext/bin/choosefonts.py | Python | lgpl-3.0 | 7,200 | [
"VisIt"
] | e2ef9ec646cbcb3395444cbc2e88a5138a92e6de485080e5d677e0fbea2d17eb |
import bpy
class MeshProperty(bpy.types.PropertyGroup):
"""Property group for mesh information
Holds all the properties for the meshes used in the animation.
Used by the Paths-panel and the Spikes-panel"""
mesh = bpy.props.StringProperty(name="Mesh")
neuron_object = bpy.props.StringProperty(name="N... | MartinPyka/Parametric-Anatomical-Modeling | pam/pam_anim/tools/meshTools.py | Python | gpl-2.0 | 1,930 | [
"NEURON"
] | cdebfeb3fc1941ee559dac2c952f35ecbb77af13efdc45302e58c523e0651770 |
# Copyright (c) 2003-2010 Sylvain Thenault (thenault@gmail.com).
# Copyright (c) 2003-2010 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by t... | dbbhattacharya/kitsune | vendor/packages/pylint/lint.py | Python | bsd-3-clause | 39,287 | [
"VisIt"
] | 9cd9ff4d7a59f9fd33365cd0d8e140cd8d1ef24d2e00228386024adcb4d46c3b |
#-------------------------------------------------------------------------------
# Name: utils.execute
# Purpose: Submodule containing utility functions for execution of
# computational chemistry software packages for Open Anharmonic
#
# Author: Brian Skinn
# bskinn@alum.mit... | bskinn/opan | opan/utils/execute.py | Python | mit | 10,503 | [
"Brian",
"ORCA"
] | 81e4dbf345313eefc50306e7a32a5bc211917285685731e50bf63e0f7404a945 |
from past.types import basestring
from builtins import * # noqa: F403, F401
import os
import shutil
import pprint
import requests
import time
from io import BytesIO
from xml.etree import ElementTree
from zipfile import ZipFile, is_zipfile
from requests.auth import HTTPBasicAuth
import geoserver
from geoserver.catalo... | tethysplatform/tethys_dataset_services | tethys_dataset_services/engines/geoserver_engine.py | Python | bsd-2-clause | 99,537 | [
"NetCDF"
] | da7a0c7ba56814667359c803ea8c0698e5f8d701fae5ed066436153ebd6fdb1d |
########################################################################
# Common functions used for solving projectEuler.net. problems.
# Copyright (C) 2011 Santiago Alessandri
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as p... | sanSS/programming-contests | project-euler/CommonFunctions.py | Python | gpl-3.0 | 3,805 | [
"VisIt"
] | e9efab91ba3c0561cb1969d84d71c23a193cc217786f37fa926619a366939e92 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | KaiSzuttor/espresso | testsuite/python/nsquare.py | Python | gpl-3.0 | 1,824 | [
"ESPResSo"
] | ba33c31b48d7be033e20671a7125bb33b96a920a0721079de5daa3a9411bf67f |
n = 5
while n > 0:
print n
n = n - 1
print "Blast Off!!!"
| ashgang/RandomAlgos | Python/countDown.py | Python | apache-2.0 | 60 | [
"BLAST"
] | 26b06ccee4848a532f019fd43540a4b951246c2f8a855584cd751fac6b1c4de1 |
from Bio import Alphabet
COUNT = 1
FREQ = 2
##################################################################
# A class to handle frequency tables
# Copyright Iddo Friedberg idoerg@cc.huji.ac.il
# Biopython (http://biopython.org) license applies
# Methods to read a letter frequency or a letter count file:
# Example fi... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/SubsMat/FreqTable.py | Python | gpl-2.0 | 2,610 | [
"Biopython"
] | e211d30ea08fd17d4583c4f409500a1ec8fc0f0b407061df7126e32fe56e8cc6 |
#
# This source file is part of the EdgeDB open source project.
#
# Copyright 2016-present MagicStack Inc. and the EdgeDB authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http... | edgedb/edgedb | edb/common/context.py | Python | apache-2.0 | 10,229 | [
"VisIt"
] | e0d9b625337cad8fa3f6cafea643afb5670b2d18b3d012d9c670d970de62ae88 |
import pytest
from .utils import *
import psi4
import numpy as np
pytestmark = pytest.mark.skip
ref = {
"conv": {
"ene": {
"d": -100.01941126909895,
"t": -100.05801143109962,
"q": -100.06768524807164,
"5": -100.0704303543983,
"6": -100.07073832... | lothian/psi4 | tests/pytests/test_zeta.py | Python | lgpl-3.0 | 12,752 | [
"Psi4"
] | fe3c95912a55ed1cac489ad134e0991a2c66339f0b5a045cbdca5cd6a7881bb7 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module define the various drones used to assimilate data.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
... | aykol/pymatgen | pymatgen/apps/borg/hive.py | Python | mit | 17,214 | [
"Gaussian",
"VASP",
"pymatgen"
] | ebe45df5561ac6519718f372041d7b1fcd4f7e97040815de6cf828aea10106f8 |
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# * Redistributions... | drichmond/tinker | python/Phy.py | Python | bsd-3-clause | 19,038 | [
"TINKER"
] | 4a995e399f643c0f5d211d455ed42ff9384168e680cc10d4d65d8f4510f1aa95 |
# -*- coding: utf-8 -*-
# Generated by Django 1.11.4 on 2017-09-04 09:45
from __future__ import unicode_literals
from django.conf import settings
from django.db import migrations, models
import django.db.models.deletion
import django.utils.timezone
class Migration(migrations.Migration):
initial = True
depe... | tomp/food_pantry | clients/migrations/0001_initial.py | Python | mit | 9,562 | [
"VisIt"
] | 5d8b78f46b5cdb9e7824a4297f9c0cb29e7a52407b43dffd1fd7dfc67ad78ff6 |
import urllib,urllib2,re,cookielib,string, urlparse,sys,os
import xbmc, xbmcgui, xbmcaddon, xbmcplugin,urlresolver
from t0mm0.common.net import Net as net
from t0mm0.common.addon import Addon
from resources.libs import main
from decimal import Decimal
import time
#Mash Up - by Mash2k3 2012.
from t0mm0.common.addon im... | marduk191/plugin.video.movie25 | resources/libs/plugins/sominaltvfilms.py | Python | gpl-3.0 | 20,517 | [
"ADF"
] | 7aaa9bbdec05fe823548d20359d52fba95626942071979962a16e4f5097e32b5 |
#!/usr/bin/env python
#
# Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | googleads/googleads-python-lib | examples/adwords/v201809/advanced_operations/add_expanded_text_ad_with_upgraded_urls.py | Python | apache-2.0 | 3,843 | [
"VisIt"
] | 3d3316c507b55dbb799477ab780b99ec74f38601cbb94ad91f36a91d4e885b2f |
# -*- coding: utf-8 -*-
"""
Created on Mon Mar 7 14:38:46 2011
Plot pca training error as a function of percentage of samples used
@author: -
"""
# Computes the gaussian gradients on a boxm_alpha_scene
import os;
import optparse;
import time;
import sys;
import plot_pca_functions;
import numpy as np
import matplotli... | mirestrepo/voxels-at-lems | bvpl/bvpl_octree/plot_training_error.py | Python | bsd-2-clause | 1,422 | [
"Gaussian"
] | 393d8536479a0fc4c61004fe8b635446e53c12d247df4202c8f625425207b594 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Views tests for the OSF."""
from __future__ import absolute_import
import datetime as dt
import httplib as http
import json
import math
import time
import unittest
import urllib
import datetime
import mock
from nose.tools import * # noqa PEP8 asserts
from modularodm... | zamattiac/osf.io | tests/test_views.py | Python | apache-2.0 | 184,669 | [
"Brian"
] | d5574e53201eaaaa538cc900a615372d3bd226d34b2fbd7ed91f667450f9a73c |
# -*- coding: UTF-8 -*-
"""
Name: concatenate.py
Porpose: A simple concat demuxer UI
Compatibility: Python3, wxPython Phoenix
Author: Gianluca Pernigotto <jeanlucperni@gmail.com>
Copyright: (c) 2018/2021 Gianluca Pernigotto <jeanlucperni@gmail.com>
license: GPL3
Rev: Sep.29.2021
Code checker:
- pycodestyle
- fl... | jeanslack/Videomass | videomass/vdms_panels/concatenate.py | Python | gpl-3.0 | 10,087 | [
"VisIt"
] | 799392c25102aeb6c9369633ede0a45fef82e11d8bf5153b81d3d93a2e387ce1 |
import numpy as np
from ase.units import Ha
from ase.dft.kpoints import monkhorst_pack
from ase.parallel import paropen
from ase.lattice import bulk
from gpaw import GPAW, FermiDirac
from gpaw.wavefunctions.pw import PW
from gpaw.mpi import size, serial_comm
from gpaw.xc.rpa import RPACorrelation
from gpaw.test import ... | robwarm/gpaw-symm | gpaw/test/rpa_energy_Na.py | Python | gpl-3.0 | 1,072 | [
"ASE",
"GPAW"
] | 3235e83fefc5080f3c50a8a569cf0e753f0f86af465e73713607cf966c18fd89 |
#
# @file TestSpeciesReference.py
# @brief SpeciesReference unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the f... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/sbml/TestSpeciesReference.py | Python | bsd-3-clause | 4,905 | [
"VisIt"
] | 952c20d035feaaf9eac9cf934fe070da5138c5655d31d5b5efaa5c2f28c4bd05 |
import sys
sys.path.insert(1, "../../")
import h2o
def offset_1388(ip, port):
print "Loading datasets..."
pros_hex = h2o.import_file(h2o.locate("smalldata/prostate/prostate.csv"))
pros_hex[1] = pros_hex[1].asfactor()
pros_hex[3] = pros_hex[3].asfactor()
pros_hex[4] = pros_hex[4].asfactor()
... | weaver-viii/h2o-3 | h2o-py/tests/testdir_jira/pyunit_NOPASS_pubdev_1388_offset_comparisons.py | Python | apache-2.0 | 2,998 | [
"Gaussian"
] | c103b871f4ddb4ed2e62288bf8efb67092217f3fad49267f112d8685c0b9aa74 |
# -*- coding: utf-8 -*-
"""This module tests various ways how to set up the provisioning using the provisioning dialog."""
import re
from datetime import datetime, timedelta
import fauxfactory
import pytest
from cfme import test_requirements
from cfme.common.provider import cleanup_vm
from cfme.infrastructure.virtual_... | rlbabyuk/integration_tests | cfme/tests/infrastructure/test_provisioning_dialog.py | Python | gpl-2.0 | 10,935 | [
"VisIt"
] | 3beaa4fe4d473f11284a4d36d52e7cdae32d8d4069b1e4182458948405935597 |
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