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import numpy
import os, inspect
from orbkit import read
from orbkit.analytical_integrals import get_dipole_moment
from orbkit.test.tools import equal
from orbkit import options
'''Reference dipole moments for 'h2o_rhf_cart' (2015-09-30):
\tMolpro 2012 (.out): 0.00000000 0.00000000 0.81739430... | orbkit/orbkit | orbkit/test/analytical_properties/dipole.py | Python | lgpl-3.0 | 3,049 | [
"Gaussian",
"Molpro",
"TURBOMOLE",
"cclib"
] | 8a11d270d8ca6c30452b335f7e53c2d03cac3e48378d2875a0fa9f7108511ab7 |
"""
=================
Lorentzian Fitter
=================
"""
import numpy
from numpy.ma import median
from numpy import pi
from pyspeckit.mpfit import mpfit
from . import fitter
class LorentzianFitter(fitter.SimpleFitter):
def __init__(self,multisingle='multi'):
self.npars = 3
self.npeaks = 1
... | keflavich/pyspeckit-obsolete | pyspeckit/spectrum/models/lorentzian.py | Python | mit | 2,204 | [
"Gaussian"
] | ad0216cce1601fa939ad00c2212458735c941ef7fed27f3a0911a625658579d3 |
# Copyright 2010 The Closure Library Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | gregrperkins/closure-library | closure/bin/build/jscompiler.py | Python | apache-2.0 | 3,423 | [
"VisIt"
] | 9d65f44fc60b95360379800a64c1bb69d65568b5e2393ab68d184915ae4c3c9e |
import logging
from copy import deepcopy
from . import ModelChecker
from indra.statements import *
from indra.ontology.bio import bio_ontology
from .model_checker import signed_edges_to_signed_nodes
logger = logging.getLogger(__name__)
class PybelModelChecker(ModelChecker):
"""Check a PyBEL model against a set o... | johnbachman/belpy | indra/explanation/model_checker/pybel.py | Python | mit | 5,708 | [
"Pybel"
] | 3291310a8a640b10ed09ca37aa1652bf62f93dcc886a44f69fbc9d554c7559e4 |
from setuptools import setup
from os import path
# Get the long description from the README file
here = path.abspath(path.dirname(__file__))
with open(path.join(here, "README.rst"), encoding="utf-8") as f:
long_description = f.read()
setup(
name="CAI",
packages=["CAI"],
version="1.0.3",
descriptio... | Benjamin-Lee/CodonAdaptationIndex | setup.py | Python | mit | 1,021 | [
"Biopython"
] | 0e420a802d78172fab1982902fbccb5d48af6f6d3e3f466c49620bffb8e50da4 |
#!/usr/bin/env python3
#
# Copyright (c) 2017 Weitian LI <liweitianux@live.com>
# MIT license
"""
Calculate the coordinate of the emission centroid within the image.
The image are smoothed first, and then an iterative procedure with
two phases is applied to determine the emission centroid.
"""
import os
import sys
i... | liweitianux/chandra-acis-analysis | bin/calc_centroid.py | Python | mit | 6,366 | [
"Gaussian"
] | 02973f0ae82d8de959d293f014241a5aece976c0555303bbe1951335f47db555 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unle... | caesarxuchao/contrib | hack/verify-flags-underscore.py | Python | apache-2.0 | 8,944 | [
"VisIt"
] | 67660fd7cae6cf1de9af6c069e8cdfa07f922b7c8ab0c5cf61463dfdbe2957af |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | precedenceguo/mxnet | python/mxnet/contrib/onnx/onnx2mx/_op_translations.py | Python | apache-2.0 | 26,004 | [
"Gaussian"
] | 11481e034a3f028234330fd0d8809c75e9192466348b4b3a721ff379956ec41b |
"""
Tests for discussion pages
"""
import datetime
from uuid import uuid4
from flaky import flaky
from nose.plugins.attrib import attr
from nose.tools import nottest
from pytz import UTC
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.fixtures.discussio... | pepeportela/edx-platform | common/test/acceptance/tests/discussion/test_discussion.py | Python | agpl-3.0 | 64,335 | [
"VisIt"
] | f4137748aef83566c0d65dfa2d456263227063edc079ef1e135cc4d0901265b3 |
import os
from docker_build import __version__
from setuptools import setup, find_packages
def read(*paths):
"""Build a file path from *paths* and return the contents."""
with open(os.path.join(*paths), 'r') as f:
return f.read()
setup(
name='docker-build-tool',
version=__version__,
de... | brian-bason/docker-build-tool | setup.py | Python | mit | 1,672 | [
"Brian"
] | 54573df71abcc327809d207022f380f4f610c6bf254fb1c0bab3076fff6953fd |
# -*- coding: utf-8 -*-
"""Functions to plot evoked M/EEG data (besides topographies)."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# C... | wmvanvliet/mne-python | mne/viz/evoked.py | Python | bsd-3-clause | 110,933 | [
"Gaussian"
] | 088f41976e11ea4093237efbdb663ad7b98ba540b4a97429ac1c77c396a8546f |
from __future__ import absolute_import
from .walk import IRWalker
class ConstantsCollection(object):
'''Special collection that compares objects not just by
equality but also by type. Hashing not used so that
we can store unhashable objects.
'''
def __init__(self, seq=None):
self.... | matthagy/Jamenson | jamenson/compiler/constants.py | Python | apache-2.0 | 1,678 | [
"VisIt"
] | 9e3c39e2db160ac169ad7ac011ede5a4e44ec62fa8f3a444168e80e2058b4d97 |
"""
@name: Modules/Web/web_server.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: 2012-2020 by D. Brian Kimmel
@note: Created on Apr 3, 2012
@license: MIT License
@summary: This module provides the web server(s) service of PyHouse.
This is a Main Module - always present.
O... | DBrianKimmel/PyHouse | Project/src/Modules/Computer/Web/web_server.py | Python | mit | 7,036 | [
"Brian"
] | 391378546aa883001fcce77710d7bae17b8ecde43c6cd3dff64a7676bda66283 |
## INFO ########################################################################
## ##
## COUBLET ##
## ======= ... | petervaro/coublet | resources/artwork/source/loader/gif.py | Python | mit | 1,821 | [
"VisIt"
] | 2604aae8b0acfabb987b1417dccccfaed4fce86c4d798813c2da39bbdf29409d |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is a high throughput computational platform for Physics. It aims to make it easier to submit
# large numbers of jobs on supercomputers. It provides a python interface to physical input, suc... | pylada/pylada-light | src/pylada/tools/makeclass.py | Python | gpl-3.0 | 22,192 | [
"CRYSTAL",
"VASP"
] | a59e0b8490a6c51115047f012462dc63755b0ce4368b12d9e579d92c343229a9 |
"""
Actions for MayaVi2 UI
"""
#Author: Martin Weier
#Copyright (C) 2006 California Institute of Technology
#This program is free software; you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation; either version 2 of the License, or
#an... | geodynamics/citcoms | visual/Mayavi2/citcoms_display/actions.py | Python | gpl-2.0 | 3,506 | [
"Mayavi",
"VTK"
] | ed4a85ea569697e42bc2953f170417dea1e236126a9493e6f94011fe2cd22d01 |
#!/usr/bin/env python2
#
# Copyright (C) 2013-2018
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eith... | MrTheodor/espressopp | testsuite/AdResS/ForceAdResS/test_AdResS.py | Python | gpl-3.0 | 16,081 | [
"ESPResSo"
] | 5a7786aa82a050ec41a89e9c2e4b06e1012aefe6a066da76bc59740615d5def7 |
'''This module implements classes for generating random data.
'''
# Standard library imports
import numpy as np
# Intra-package imports
from ..ensemble import _largest_power_of_2_leq
from ..spectra.nonparametric import _plot_image
class RandomSignal(object):
'''A class for the creation of 1-dimensional rando... | emd/random_data | random_data/signals/random_signal.py | Python | gpl-2.0 | 21,850 | [
"Gaussian"
] | dd0e9ca477fcf640a4064ab9e8f47538ce2a70a6d14cea011671c6d29683559a |
from django.db import models
import cms
from cms.models.pluginmodel import CMSPlugin
from django.utils.translation import ugettext_lazy as _
from filer.fields.image import FilerImageField
class MBDAboutTeamBar(CMSPlugin):
"""
Plugin to describe the information stored for a Team Bar in the Template
"""
... | ti3r/mbd-cms-template | mbd_cms_template/models.py | Python | mit | 12,188 | [
"VisIt"
] | 320bc342c3849dff663e05bab1a5b548f624ab3eb78ffd993982cd64b966b9eb |
import subprocess, time, requests, json
name = "Linus Torvalds" # The name for the character, by default is ya pal Chuck
restartSeconds = 30 # Seconds between each joke
restartIfError = 120 # Seconds before a restart after an error
color = '\e[92m' # For green, to see a list of colors visit http://misc.f... | Capuno/Cowsay-with-chuck-api | autoCow.py | Python | gpl-3.0 | 1,025 | [
"VisIt"
] | 3150c4aba192a8d13a3ee1db64ffbe0f33d235d3594e32ea41b4884ecdb6b804 |
# -*- coding: utf-8 -*-
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Changing field 'item.quantidade_excedente'
db.alter_column(u'salesReport_item', 'quantidade_excedente', s... | akiokio/centralfitestoque | src/salesReport/migrations/0035_auto__chg_field_item_quantidade_excedente.py | Python | bsd-2-clause | 8,389 | [
"VMD"
] | 000893e5d38a2520e5ac5c360e15ece5d6822f83d6a51c2d302bed332331c929 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/fci/selected_ci_spin0_symm.py | Python | apache-2.0 | 6,419 | [
"PySCF"
] | e44694dcee149a3f4beaee73ba1d9d4655d20a817a1c294d158835f5229e0f32 |
"""
Tests which scan for certain occurrences in the code, they may not find
all of these occurrences but should catch almost all. This file was adapted
from NumPy.
"""
from __future__ import division, absolute_import, print_function
import os
import sys
import scipy
import pytest
if sys.version_info >= (3, 4):
... | jamestwebber/scipy | scipy/_lib/tests/test_warnings.py | Python | bsd-3-clause | 4,193 | [
"VisIt"
] | d48f9bdaf638b8b6da0ebd64351169f07e0daf63e83b30096b3acdeafe8fbdec |
#!/usr/bin/env python
'''
Submit multi-thread upload/download jobs in client
'''
import threading
import time,os
def addFile(m):
timeStart = time.time()
n = m + 0
#print 'Adding file100m-%04d' %n
cmd = 'dirac-dms-add-file /cepc/stormtest/100M-files-10/file100m-%04d random100M IHEP-STORM' %n
os.sy... | yan-tian/stormutils | stormutils/stressTesting/utils/client_submit.py | Python | gpl-2.0 | 1,742 | [
"DIRAC"
] | 5233b576ec0a12e9382f45915ebffa134ac4901d3390018de79d8580468677ac |
#!/usr/bin/python
'''
Create Video Statistics
'''
import os, sys
import csv
import re
import json
import gsutil
import bqutil
import datetime
import process_tracking_logs
from path import path
from collections import OrderedDict
from collections import defaultdict
from check_schema_tracking_log import schema2dict, ch... | CGNx/edx2bigquery | edx2bigquery/make_video_analysis.py | Python | gpl-2.0 | 25,478 | [
"VisIt"
] | 601ad1d1a4a8bb985f776edfa0d5a5fc4389a0b7647567ca1ccab83c2550610d |
"""ndb model definitions
Many of these are similar to models in models.py, which are Django models. We
need these ndb versions for use with runtime: python27, which is required by
endpoints.
"""
import collections
import logging
import math
import os
import webapp2
from google.appengine.api import search
from google... | babybunny/rebuildingtogethercaptain | gae/room/ndb_models.py | Python | apache-2.0 | 45,574 | [
"VisIt"
] | 1283a78a20b76f3fb1821ddd5904cd5e014d1fd488fb49483e74528ec947892e |
## This code is written by Davide Albanese, <albanese@fbk.eu>.
## (C) 2011 mlpy Developers.
## This program is free software: you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your op... | manhtuhtk/mlpy | mlpy/kernel_class.py | Python | unlicense | 2,326 | [
"Gaussian"
] | e27c2e517c0bc85159f616018d61b23f2baf4691fef376e7827f2b03fbd43f24 |
## OUTPUT FUNCTIONS
# PART1: STORE DATA in netCDF4 file (output__nc_ini,output_nc,output_nc_fin)
# PART2: STORE INFO in txt file (output_txt_ini, ...
# PART3: STORE PARAMETERS IN .NPY FILE
## STORE DATA
def output_nc_ini():
""" Initialise the netCDF4 file."""
param['output_j'] = 0 # output index
# stor... | milankl/swm | swm_output.py | Python | gpl-3.0 | 6,697 | [
"NetCDF"
] | acd3abb4c52f91410597aa2135fd90af937a5b742f91bd65a86b8fc7d7307099 |
from __future__ import print_function, division
from sympy.core import S, sympify, Dummy
from sympy.core.function import Function, ArgumentIndexError
from sympy.core.logic import fuzzy_and
from sympy.core.numbers import Integer
from sympy.ntheory import sieve
from math import sqrt as _sqrt
from sympy.core.compatibili... | vipulroxx/sympy | sympy/functions/combinatorial/factorials.py | Python | bsd-3-clause | 21,778 | [
"VisIt"
] | d1cfbdd05f2cd65dd7a39a8e2bda902c2e8257bdd831d375b1d8f243c727f250 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/lb_thermo_virtual.py | Python | gpl-3.0 | 3,198 | [
"ESPResSo"
] | 9a9922943bbdccdae0490c0ff8ae0032e7471e23932d5662a680e75d4d6dd259 |
#
# Copyright 2015 James Kermode (Warwick U.)
# 2015 Till Junge (EPFL)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publ... | libAtoms/matscipy | matscipy/distributed_computation.py | Python | lgpl-2.1 | 10,625 | [
"Matscipy"
] | 6949b1f22186c56f196bd7e635c74439568e94b863d439d801f4c7ab619fecb6 |
import vtk
import os
def ensight2vtk(file_path, out_dir, file_name,
vtu_out_1="wall_outfile_node.vtu",
vtu_out_2="inlet_outfile_node.vtu", vtu_out_3="interior_outfile_node.vtu",
wall=True, inlet=True, interior=True, interior_name="default_interior-1"):
print(wall, ... | kayarre/Tools | vtk/ensight2vtk_single_encas_tcd.py | Python | bsd-2-clause | 5,696 | [
"VTK"
] | 718ead34d116984b032ab2a684786e254c67366c201cd595f0dc2f88ae03d814 |
# -*- coding: utf-8 -*-
#
# test-aeif_cond_alpha_RK5.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of th... | synergetics/nest | pynest/examples/test-aeif_cond_alpha_RK5.py | Python | gpl-2.0 | 3,520 | [
"NEURON"
] | 770a1c024ee963039591afa8c2e59133a744e5156883070e86f45f80f053e8cc |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleads/google-ads-python | google/ads/googleads/v10/common/types/targeting_setting.py | Python | apache-2.0 | 4,071 | [
"VisIt"
] | aa9c3252088d5324d51f639304d410b3266a8ef000f216875053736810b004cc |
# !usr/bin/env python
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2018-06-21 17:01:09
# @Last modified by: José Sánchez-Gallego (gallegoj@uw.edu)
# @Last Modified time: 2018-10-17 00:22:19
from __future__ import absolute_import, division, print_function
im... | sdss/marvin | python/marvin/contrib/vacs/base.py | Python | bsd-3-clause | 12,350 | [
"Brian"
] | fe91facfbaab8b2a042fdd2c2ea832ae8d71251f9cf9c921cf36e03edb92da69 |
"""
@name: Modules/House/Entertainment/pandora/pandora.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c)2014-2020 by D. Brian Kimmel
@note: Created on Feb 27, 2014
@license: MIT License
@summary: Controls pandora playback thru pianobar.
When PyHouse starts initiall... | DBrianKimmel/PyHouse | Project/src/Modules/House/Entertainment/Pandora/pandora.py | Python | mit | 28,349 | [
"Brian"
] | cfbe714bd9875ee15a1eccc7c6ab50e3ad359cdeebb3c0b2bad087e6d15df3d2 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008-2010, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License ... | NetNow/wmi-samba | pysamba/composite_context.py | Python | gpl-2.0 | 2,396 | [
"VisIt"
] | 7747fd0e24ea5d7a3daccb921708faeccb2ef3384052e28b0edcf78903d5e4f5 |
#!/usr/bin/env python
# File created on 09 Feb 2010
from __future__ import division
__author__ = "Greg Caporaso, Jens Reeder"
__copyright__ = "Copyright 2011, The QIIME Project"
__credits__ = ["Greg Caporaso", "Daniel McDonald", "Jens Reeder",
"Jose Antonio Navas Molina"]
__credits__ = [
"Greg Capor... | josenavas/qiime | scripts/identify_chimeric_seqs.py | Python | gpl-2.0 | 22,016 | [
"BLAST"
] | 0ce63a521a1ad2e8f3fa98af3efa8d35a3bb2a8cd0924c74dca22276eeeb95fc |
# -*- coding: utf-8 -*-
import datetime
from django.core.files.base import ContentFile
from django.core.files.storage import default_storage
try:
from django.utils import lorem_ipsum
except ImportError:
# Support Django < 1.8
from django.contrib.webdesign import lorem_ipsum
import os
import random
import re... | paulmouzas/blogodrone | autofixture/generators.py | Python | unlicense | 20,906 | [
"Brian"
] | 6384c6c0d7f6e6a751a98295951168a436618fd288531d6199efdce8a444fc53 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import print_function, absolute_import
from setuptools import setup, find_packages
import os
import pbxplore
here = os.path.abspath(os.path.dirname(__file__))
with open(os.path.join(here, 'README.rst')) as f:
readme = f.read()
# Extras requirements ... | jbarnoud/PBxplore | setup.py | Python | mit | 2,332 | [
"MDAnalysis"
] | 53a440f089971ef8e631608968f5c8960755b8fb5c82bf9e433d8fe0502dd124 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | rabipanda/tensorflow | tensorflow/contrib/distributions/python/ops/autoregressive.py | Python | apache-2.0 | 7,870 | [
"Gaussian"
] | ba45cfbbbca2c6e3e24a3a4ce1d2be16671bbac68925b992fae13ab1cdb185cd |
#!/usr/bin/env python
#
# Restriction Analysis Libraries.
# Copyright (C) 2004. Frederic Sohm.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
"""Update the Rebase emboss files used by ... | updownlife/multipleK | dependencies/biopython-1.65/Scripts/Restriction/rebase_update.py | Python | gpl-2.0 | 4,208 | [
"Biopython"
] | db716f55d6139aaf3863b7bb22bd2eaf8a706856bb717c4937940375bef4932d |
# powerSpec1.py
# test script for computing power spectrum
# 2014-06-10
"""
== Spectral analysis ==
0. RADAR domain -> normalise to WRF domain
tests to do -
1. average each 4x4 grid in RADAR then compare the spectrum of the resulting image
to the original RADAR image
2. filter (gaussian with variou... | yaukwankiu/armor | tests/powerSpec1.py | Python | cc0-1.0 | 7,518 | [
"Gaussian"
] | dd561b5a62b1174c05466a7990bc93338378ca5ef2338061e5fc03f0298e0362 |
# coding=utf-8
from __future__ import absolute_import, division, print_function, unicode_literals
from boot_config import *
import os, sys, re
import gzip
import json
import shutil
import webbrowser
import subprocess
import argparse
import hashlib
from datetime import datetime
from functools import partial
from colle... | noembryo/KoHighlights | main.py | Python | mit | 134,224 | [
"VisIt"
] | c2f3474769684765b26dadb4acd05a5e73712cc736975638270b890ed8bd47fc |
# -*- coding: utf-8 -*-
from django.contrib.auth.models import AnonymousUser, User
from django.db import IntegrityError
from mock import Mock, patch
from nose.tools import eq_
from pyquery import PyQuery as pq
import amo
from amo.tests import TestCase
from users.models import UserProfile
from .backends import Session... | jbalogh/zamboni | apps/cake/tests.py | Python | bsd-3-clause | 6,802 | [
"VisIt"
] | 416bae144983f156660b03274d4a428d9ad365555784f1ddfe95780041e980e9 |
#!/usr/bin/env python
'''
File name: main_ripp_mod.py
Author: Guillaume Viejo
Date created: 16/08/2017
Python Version: 3.5.2
'''
import sys
import numpy as np
import pandas as pd
import scipy.io
from functions import *
# from pylab import *
# import ipyparallel
from multiprocessing import Pool
imp... | gviejo/ThalamusPhysio | python/main_make_ISOMAP_HD.py | Python | gpl-3.0 | 7,288 | [
"Gaussian"
] | 01be55d9a4a0a5ffd578bac0e82927440ace1f6639dbb7baae5d2a9ebf4a7436 |
../../../../../../../share/pyshared/orca/scripts/apps/nautilus/script.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/nautilus/script.py | Python | gpl-3.0 | 72 | [
"ORCA"
] | c7b1cbb9f134fb83769040d299b8b5dac3c301446e2df3e1045dc0465f70bf52 |
import tkSimpleDialog
import tkMessageBox
#import p3d.protein
#import p3d.geo
from pymol.wizard import Wizard
from pymol import cmd, util
from pymol.controlling import mode_dict
class Bond(object):
def __init__(self,bond1,bond2,resid1,resid2):
if bond2 > bond1:
self.bond1=bond1
self... | tmorrell/SamStruct | inputs/selector.py | Python | gpl-2.0 | 14,445 | [
"PyMOL"
] | b38aec23f83c72956e053dec76141a6a7b30d4323955b02c1dbb16daea638b54 |
__author__ = "Andre Merzky, Ole Weidner, Mark Santcroos"
__copyright__ = "Copyright 2012-2015, The SAGA Project"
__license__ = "MIT"
""" PBSPro job adaptor implementation
"""
import threading
import saga.url as surl
import saga.utils.pty_shell as sups
import saga.adaptors.base
import saga.adaptors.... | mehdisadeghi/saga-python | src/saga/adaptors/pbspro/pbsprojob.py | Python | mit | 47,635 | [
"Jaguar"
] | bbd2e85978cf89664a544ade5d52c6bb0605699455ecbf41fea0f3aa165a144a |
#!/usr/bin/env python
from __future__ import print_function, division
import IMP
import IMP.core
import IMP.isd
import IMP.isd.gmm_tools
import IMP.algebra
import IMP.test
import numpy as np
from math import cos, sin, pi, sqrt, exp, log
from copy import deepcopy
import itertools
def create_test_points(mu, radii):
... | shanot/imp | modules/isd/test/medium_test_gaussian_em_restraint.py | Python | gpl-3.0 | 8,453 | [
"Gaussian"
] | 1d3eb54bb37acf3c75e455df29f309fa47d6b578cc3631a87890f48c1959d87d |
import pymol
from pymol import cmd;
import sys
pymol.finish_launching()
import time ; time.sleep(1);
cmd.load('2XPI.pdb')
cmd.save('2XPI.fasta','chain A')
cmd.quit()
| smoitra87/mrfs | data/multicols/PF12569/get_fasta_from_pdb.py | Python | apache-2.0 | 166 | [
"PyMOL"
] | c30483d7493c52cf792e95209370eb0b3df590a174ff34b34f68da8cb0c76fba |
import nest
import pong
import numpy as np
import pickle
import time
import os
STDP_AMPLITUDE = 5.0 # arb. unit
STDP_TAU = 20.0 # ms
ONLY_CAUSAL = True
EPSC = 90.0
EPSC_MAX = 200.0
EPSC_BG = 200.0
BG_RATE = 0.5
SYN_DICT = {'weight': EPSC}
MEAN_RUNS = 5.0 # reward averaged over this no. of runs
NEURON... | yungwundi/pang | pang.py | Python | gpl-3.0 | 12,926 | [
"NEURON"
] | f873a04928e8fa6d4e42596f573c060a95105b674271285e2bbfc4f979cfb830 |
import pickle
from io import BytesIO
import numpy as np
import scipy.sparse
from sklearn.datasets import load_digits, load_iris
from sklearn.model_selection import train_test_split
from sklearn.model_selection import cross_val_score
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert... | kashif/scikit-learn | sklearn/tests/test_naive_bayes.py | Python | bsd-3-clause | 17,897 | [
"Gaussian"
] | 0af47f1a5293872d166557bc760fa67378f4e0f55709b9933207852391757ad2 |
#!/usr/bin/env python
#
# @file GeneralFunctions.py
# @brief class to create general functions
# @author Frank Bergmann
# @author Sarah Keating
#
# <!--------------------------------------------------------------------------
#
# Copyright (c) 2013-2018 by the California Institute of Technology
# (California, USA... | sbmlteam/deviser | deviser/code_files/cpp_functions/GeneralFunctions.py | Python | lgpl-2.1 | 63,638 | [
"VisIt"
] | fc80137bb23a0003afbb99f30a05580119a26d428ed3f64eb980b002b7ac87d7 |
from __future__ import absolute_import
from __future__ import division
from typing import Any, Dict, List, Tuple, Optional, Sequence, Callable, Union
from django.db import connection
from django.db.models.query import QuerySet
from django.template import RequestContext, loader
from django.core import urlresolvers
from... | Vallher/zulip | analytics/views.py | Python | apache-2.0 | 28,082 | [
"VisIt"
] | c4dbacdcda4fa57e8af82afe72694f9e5ed231a659dceedd27eaef89362a2ea2 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
Created on Jul 24, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "shyuep@gmail.com"
__date__ = "Jul 24, 2012"
import unittest
impo... | rousseab/pymatgen | pymatgen/transformations/tests/test_advanced_transformations.py | Python | mit | 11,086 | [
"VASP",
"pymatgen"
] | 17a93f81547fa6a127e74922941e420e65f960d4e3235b3723649af8b4c4539a |
#!/usr/bin/env python
# Python 2/3 compatibility
from __future__ import print_function
import sys
PY3 = sys.version_info[0] == 3
if PY3:
xrange = range
import numpy as np
from numpy import random
import cv2
def make_gaussians(cluster_n, img_size):
points = []
ref_distrs = []
for _i in xrange(cluster... | zzjkf2009/Midterm_Astar | opencv/samples/python/gaussian_mix.py | Python | mit | 2,081 | [
"Gaussian"
] | 1cbc640509a6f03ac8c82113bb1145932c7e9467551bc9a0f758ad6f90be3619 |
""" DIRAC FileCatalog component representing a simple directory tree
"""
__RCSID__ = "$Id: $"
import os
import types
from DIRAC import S_OK, S_ERROR
from DIRAC.DataManagementSystem.DB.FileCatalogComponents.DirectoryTreeBase import DirectoryTreeBase
class DirectorySimpleTree( DirectoryTreeBase ):
""" Class managi... | andresailer/DIRAC | DataManagementSystem/DB/FileCatalogComponents/DirectorySimpleTree.py | Python | gpl-3.0 | 4,383 | [
"DIRAC"
] | a7446a7c135c0e37d02815dfa964f2f85d97823c9ed7c0be7bdeed6b9a9ff910 |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
__author__ = 'Brian Quinlan (brian@sweetapp.com)'
import collections
import functools
import logging
import threading
import time
FIRST_COMPLETED = 'FIRST_COMPLETED'
FIRST_EXCEPTION = 'FIRST_EXCEPTION'
ALL_COMPLETED... | cnsoft/kbengine-cocos2dx | kbe/src/lib/python/Lib/concurrent/futures/_base.py | Python | lgpl-3.0 | 19,316 | [
"Brian"
] | 3db5a8d7353bf624187a623f78e60f5dc947410e31c8bc82a22023570052776a |
# Orca
#
# Copyright 2006-2008 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/find.py | Python | gpl-3.0 | 14,205 | [
"ORCA"
] | 43a5e938d423a4cd5eb3454bbda069325c5bdf887fa2669f834dd128e0704fd6 |
"""
=========================================
Density Estimation for a Gaussian mixture
=========================================
Plot the density estimation of a mixture of two Gaussians. Data is
generated from two Gaussians with different centers and covariance
matrices.
"""
import numpy as np
import matplotlib.py... | manhhomienbienthuy/scikit-learn | examples/mixture/plot_gmm_pdf.py | Python | bsd-3-clause | 1,518 | [
"Gaussian"
] | 0c634ac657be44919216b8f244834615417a6256885539802c1f1f3994c0b43a |
"""quodsite URL Configuration
The `urlpatterns` list routes URLs to views. For more information please see:
https://docs.djangoproject.com/en/1.10/topics/http/urls/
Examples:
Function views
1. Add an import: from my_app import views
2. Add a URL to urlpatterns: url(r'^$', views.home, name='home')
Class-b... | ouh-churchill/quod | config/urls.py | Python | mit | 2,234 | [
"VisIt"
] | 1b6508fdfcd60c56d78e3bdcd91046ecb903fcc5213cc29cb0f402bc837da179 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# This test checks netCDF reader. It uses the COARDS convention.
renWin = vtk.vtkRenderWindow()
renWin.SetSize(400,400)
##############################################################... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/IO/NetCDF/Testing/Python/NetCDFCFSetOutputType.py | Python | gpl-3.0 | 5,422 | [
"NetCDF",
"VTK"
] | aaf52edba26445a60d271fec5c0ee6410248c4ed23342365963026bd4a338a1d |
import os
from tornado.web import StaticFileHandler, HTTPError
from DIRAC import rootPath
class StaticHandler(StaticFileHandler):
def initialize(self, pathList, default_filename=None):
# pathList: ['/opt/dirac/pro/WebAppExt/WebApp/static', ...]
self.pathList = [os.path.abspath(path) + os.path.se... | DIRACGrid/WebAppDIRAC | src/WebAppDIRAC/Core/StaticHandler.py | Python | gpl-3.0 | 920 | [
"DIRAC"
] | 271e3d0790185f3e2c66e083ad1f7020cff02b23608d7fcd6c2ecf4aa484ea0a |
import pickle
import signal_processing as sig_proc
import numpy as np
import matplotlib.pyplot as plt
import math
from scipy import stats
import copy
#step phase analysis for each neuron and global
dir_name = '../data/r448/r448_131022_rH/'
img_ext = '.eps'
save_img = True
show = True
trials = [2, 5, 6, 7]
#signal fi... | scauglog/brain_record_toolbox | script_r415_snr_evolution.py | Python | mit | 2,300 | [
"NEURON"
] | d526a6b1963a84529346cd5208dab000ebde9ec10c07e668d2f78a1e11980cf8 |
"""
Simulation-generated data can provide an external criterion to validate
clustering methods. This module contains a set of command-line tools for
performing simulations, clustering their output, and producing analaysis
reports.
"""
import random
import os
import sys
import string
import operator
import logging
impo... | escherba/lsh-hdc | lsh_hdc/monte_carlo/strings.py | Python | bsd-3-clause | 21,732 | [
"Gaussian"
] | 05659c5bffb44b07b2650497bf72d2a02025296e71ae8a3232b4c2a7a8a5f91e |
__author__ = 'adeb'
import numpy as np
import theano
from theano.tensor.signal import downsample
from theano.tensor.nnet import conv, conv3d2d
from theano.tensor.shared_randomstreams import RandomStreams
from spynet.utils.utilities import share, get_h5file_data
from spynet.models.max_pool_3d import max_pool_3d
cl... | adbrebs/spynet | models/layer_block.py | Python | bsd-2-clause | 12,434 | [
"Gaussian"
] | 987cdf7bc69c7a19ba22dd6507c434f84d8f5c68da5249bd219a0d3faf2d06da |
########################################################################
# This example illustrates how a function can be used to control a reaction
# rate. This kind of calculation is appropriate when we need to link
# different kinds of physical processses with chemical reactions, for
# example, membrane curvature... | dilawar/moose-core | tests/core/test_function_controls_reac_rate.py | Python | gpl-3.0 | 3,293 | [
"MOOSE"
] | b9306124af3f27c2ad5babc84d4ddf37706d5698759bed95beffbc7b17f18ae5 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/share/psi4/databases/NHTBH.py | Python | gpl-2.0 | 36,640 | [
"Psi4"
] | d4717652ae1abc10ce23028b07844ba44d6158fbca124f46f9d9b0264ba43b0a |
import FluidChannel as fc
import numpy as np
#overall channel dimensions
aLx_p = 1.0
aLy_p = 1.0
aLz_p = 5.0
aNdivs = 21
#sphere position
a_x = 0.5
a_y = 0.5
a_z = 2.0
r = 0.2
#create the obstruction object
myObst = fc.SphereObstruction(r,a_x,a_y,a_z);
#creat the fluid channel object
myChan = fc.FluidChannel(Lx_p =... | stu314159/pyNFC | geom_demo1.py | Python | mit | 551 | [
"VTK"
] | 2bb7663280ca8ad09ad4a661546457d8a909c90a3c5e8ebed48fd91e06bac3b0 |
"""
Implements several extended-ensemble Monte Carlo sampling algorithms.
Here is a short example which shows how to sample from a PDF using the replica
exchange with non-equilibrium switches (RENS) method. It draws 5000 samples from
a 1D normal distribution using the RENS algorithm working on three Markov chains
bein... | csb-toolbox/CSB | csb/statistics/samplers/mc/multichain.py | Python | mit | 55,707 | [
"VisIt"
] | e65b53258145a227810fb6300d95e1b1fbe4373d3cd7666bc31aed25cd3b022a |
import ovito
from ovito.io import (import_file, export_file)
from ovito.vis import *
import os
test_data_dir = "../../files/"
node1 = import_file(test_data_dir + "LAMMPS/class2.data", atom_style = "full")
node1.add_to_scene()
node1.source.particle_properties.position.display.shape = ParticleDisplay.Shape.Square
node1... | srinath-chakravarthy/ovito | tests/scripts/test_suite/povray_exporter.py | Python | gpl-3.0 | 481 | [
"LAMMPS",
"OVITO"
] | accbdc526370e97d69cecede569c7bb47d128abb096060c01db2960c11629708 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
__author__ = 'stsmith'
# easylist_pac: Convert EasyList Tracker and Adblocking rules to an efficient Proxy Auto Configuration file
# Copyright (C) 2017-2020 by Steven T. Smith <steve dot t dot smith at gmail dot com>, GPL
# This program is free software: you can redistr... | essandess/easylist-pac-privoxy | easylist_pac.py | Python | gpl-3.0 | 94,607 | [
"VisIt"
] | c2fe474223f8646ebdea124e669d99fe32b41154447bfe9e75be18c60394bca0 |
from JumpScale import j
import mongoengine
from eve import Eve
from eve_mongoengine import EveMongoengine
from flask.ext.bootstrap import Bootstrap
from eve_docs import eve_docs
# create some dummy model class
# default eve settings
my_settings = {
'MONGO_HOST': 'localhost',
'MONGO_PORT': 27017,
'MONGO_... | Jumpscale/web | examples/test/start.py | Python | apache-2.0 | 968 | [
"VisIt"
] | f07b3f5acac4f5d8d3457cd15745d144613fa8a6b1c764210aec64bce1c48651 |
import numpy as np
import scipy.linalg as linalg
np.set_printoptions(linewidth=200)
#invSqrt2pi = np.sqrt(np.pi*2)
#invSqrtPiHalf = 1/np.sqrt(np.pi*0.5)
gauss_renorm0 = 1/( 4*np.pi * np.sqrt(np.pi*0.5) )
# =========================== Functions
def applyH( f, ddfR, ddfT, V, k_h2m=0.1, bDebug=False ):
Tf = -( ... | ProkopHapala/SimpleSimulationEngine | python/pyGaussAtom/GaussAtom.py | Python | mit | 7,583 | [
"Gaussian"
] | 0cf3e11fea42172389f8500a2f570747805e72f966af85a0246cf72290fc1137 |
import json
import pprint
master_ingrd_dict = {
'spices' : ['paprika',
'cayenne pepper',
'chili powder',
'curry powder',
'vanilla extract',
'vanilla bean',
'kosher salt',
'bay leaf',
'bay leaves',
'crushed red... | mingtaiha/n.ai | scripts/get_ingredient.py | Python | mit | 17,631 | [
"ESPResSo"
] | 5ffd13b05e4e1f31d2eff734286c68579f8e39c83fedc84e2a656dbf7375cc64 |
# (C) British Crown Copyright 2010 - 2018, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | duncanwp/iris | lib/iris/tests/__init__.py | Python | lgpl-3.0 | 45,786 | [
"NetCDF"
] | 537b24751a7fab0c969f88f17f2a5a85f96129917282859d54e23a10648bc67d |
"""
This sample demonstrates a simple skill built with the Amazon Alexa Skills Kit.
The Intent Schema, Custom Slots, and Sample Utterances for this skill, as well
as testing instructions are located at http://amzn.to/1LzFrj6
For additional samples, visit the Alexa Skills Kit Getting Started guide at
http://amzn.to/1LG... | dashnash/breast-easier-lambdafunc | src/main.py | Python | mit | 4,948 | [
"VisIt"
] | 2bcf9069f45db7d387e5a1f4898fab3aa7487264840b00dc41f69fb760b96f61 |
# Copyright (c) Charl P. Botha, TU Delft.
# All rights reserved.
# See COPYRIGHT for details.
import config
from install_package import InstallPackage
import os
import shutil
import sys
import utils
# NB: for this module to build successfully, ITK has to be built with
# ITK_USE_REVIEW=ON (until the itkFlatStructu... | nagyistoce/devide.johannes | install_packages/ip_itkvtkglue.py | Python | bsd-3-clause | 5,230 | [
"VTK"
] | be140ab318acb777b3674379d70ddd52a88828f0fefb0fdc6bdfdedc983a0719 |
#!/usr/bin/python
"""
Copyright (C) 2008 Andreas Engelbredt Dalsgaard <andreas.dalsgaard@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, o... | yzh89/pyuppaal | pyuppaal/ulp/compiler.py | Python | gpl-3.0 | 1,047 | [
"VisIt"
] | d6fbd1722c43e3646d19dc9ee5f0deaab3f5b0036946e1a14ac2782f7fb83243 |
#!/usr/bin/env python
#
# DNATool - A program for DNA sequence manipulation
# Copyright (C) 2012- Damien Farrell & Jens Erik Nielsen
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either vers... | dmnfarrell/peat | DNATool2/Prefs.py | Python | mit | 11,106 | [
"PyMOL",
"RasMol",
"VMD",
"YASARA"
] | d59581cfade6395a2aa79926d514e3ba5a1376a78aabf764e8acfe43ae21dba3 |
#!/usr/bin/env python
## Copyright (C) 2005-2006 Graham I Cummins
## This program is free software; you can redistribute it and/or modify it under
## the terms of the GNU General Public License as published by the Free Software
## Foundation; either version 2 of the License, or (at your option) any later version.
##... | gic888/MIEN | nmpml/recording.py | Python | gpl-2.0 | 5,293 | [
"NEURON"
] | 7317185af36ea85998e7018c41b9d0945c7b6c5f69fd997bcf38091c829c4415 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
# Copyright (C) 2019
# Max Planck Computing and Data Facility
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free softwa... | govarguz/espressopp | src/storage/DomainDecompositionAdress.py | Python | gpl-3.0 | 4,205 | [
"ESPResSo"
] | 07e86e706bcc2632f5ac54630ad856e253bb80e959879c711732e320ce05284b |
'''
Example of a spike generator (only outputs spikes)
In this example spikes are generated and sent through UDP packages. At the end of the simulation a raster plot of the
spikes is created.
'''
from brian import *
import numpy
from brian_multiprocess_udp import BrianConnectUDP
number_of_neurons_total = 45
numbe... | ricardodeazambuja/BrianConnectUDP | examples/InputNeuronGroup_multiple_outputs.py | Python | cc0-1.0 | 1,929 | [
"Brian",
"NEURON"
] | 5afb38fba155b2f53e3e76999963f6df77b21da74d770019de233587c42a1ac1 |
from numpy import c_, zeros, arange
from traits.api import HasStrictTraits, \
true, false, Instance
from mayavi.sources.vtk_data_source import VTKDataSource
from mayavi.sources.array_source import ArraySource
from mayavi.core.source import Source
from mayavi.core.trait_defs import ArrayOrNone
from tvtk.api impo... | dmsurti/mayavi | mayavi/tools/data_wizards/data_source_factory.py | Python | bsd-3-clause | 8,298 | [
"Mayavi",
"VTK"
] | 681117a93fb24671ee119148ae2c98c22912d07599db33244c3808136e57dfa8 |
from future import standard_library
standard_library.install_aliases()
import logging
import pycurl
import io
import re
import os
import hashlib
from biomaj.utils import Utils
from biomaj.download.ftp import FTPDownload
try:
from io import BytesIO
except ImportError:
from StringIO import StringIO as BytesIO
... | horkko/biomaj-postgres | biomaj/download/http.py | Python | agpl-3.0 | 4,880 | [
"BLAST"
] | 0a698a51cbf25e94d7acd1eb91f125dbb5d8dd7433e946ebe3605ea96cffae0c |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2009 Brian G. Matherly
# Copyright (C) 2009 Peter G. Landgren
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as pu... | arunkgupta/gramps | gramps/gen/constfunc.py | Python | gpl-2.0 | 3,813 | [
"Brian"
] | 2e37917801d40f25e6c1fcaee469fca697cdbe624e4ea973beb2e25c2fd456df |
"""End-To-End Memory Networks.
The implementation is based on http://arxiv.org/abs/1503.08895 [1]
"""
from __future__ import absolute_import
from __future__ import division
import tensorflow as tf
import numpy as np
from six.moves import range
import code
def position_encoding(sentence_size, embedding_size):
"""... | ZeweiChu/memn2n | memn2n/memn2n.py | Python | mit | 12,164 | [
"Gaussian"
] | 88d2999379a2ec882d4150a861af822c24d01cd9982f0063085c42bc1c81ccba |
# -*- coding=utf-8 -*-
"""functional testing for bioweb application"""
import sys
import os
import time
import unittest
import re
import subprocess
from splinter import Browser
from selenium.common.exceptions import NoAlertPresentException, NoSuchElementException
##find_by_type
def findByType(browser, id... | mingless/bayesian_webclass | bioweb/functional_tests.py | Python | mit | 6,935 | [
"VisIt"
] | a5c90e970cbbda23cd8f4aff2f339cbb2e3ada5667a89375a37930953c2091bf |
# Copyright (C) 2017
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, o... | espressopp/espressopp | src/interaction/ConstrainRG.py | Python | gpl-3.0 | 4,044 | [
"ESPResSo"
] | edd0ddaee2d5ecbf0367c801bc55be630f63b1e04f03bd746a098e1b20a81ce5 |
import tensorflow as tf
import numpy as np
import math
class MySimpleModel(object):
def __init__(self, resize, label_size):
# session init
self.sess = tf.InteractiveSession()
# variable
self.x = tf.placeholder(tf.float32, shape=[None, resize*resize])
self.y_ = tf.placeholde... | lastone9182/flask | static/uploads/backup/mymodel.py | Python | mit | 5,075 | [
"NEURON"
] | c00352aee226f3065e868f81ae94b1bc4eee6692ee5a45cab315e64b4d57cd7e |
#!/usr/bin/env python
########################################################################
# File : dirac-wms-get-wn
# Author : Philippe Charpentier
########################################################################
"""
Get WNs for a selection of jobs
"""
import datetime
from functools import cmp_to_key
... | ic-hep/DIRAC | src/DIRAC/WorkloadManagementSystem/scripts/dirac_wms_get_wn.py | Python | gpl-3.0 | 7,583 | [
"DIRAC"
] | 784e4c4af2ae4d41f110cde836dcbc2b36c41df5749e1f0f845fbf27dd074d01 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Core scripts for the OrcaNet package.
"""
import os
import toml
import warnings
import time
from datetime import timedelta
import keras as ks
import orcanet.backend as backend
from orcanet.utilities.visualization import update_summary_plot
from orcanet.in_out import I... | ViaFerrata/DL_pipeline_TauAppearance | orcanet/core.py | Python | agpl-3.0 | 34,137 | [
"ORCA"
] | d4da5b3cf3440a23835e3a6c32fd4ecb9173de742019957c0db61d0b6f8bf75b |
from math import *
import random
# don't change the noise paameters
steering_noise = 0.1
distance_noise = 0.03
measurement_noise = 0.3
class plan:
# --------
# init:
# creates an empty plan
#
def __init__(self, grid, init, goal, cost=1):
self.cost = cost
self.grid = grid
... | AKS1996/VOCOWA | segmented_cte.py | Python | mit | 15,242 | [
"Gaussian"
] | 777cc560054b71be200cddd8a230032e81de8f3734323482844f8ba9bcd8f6ed |
import cStringIO
import logging
import operator as op
from antlr3.tree import CommonTree as AST
from lib.typecheck import *
import lib.const as C
import lib.visit as v
from .. import util
from . import field_nonce, register_field
import expression as exp
import clazz
class Field(v.BaseNode):
def __init__(self, ... | plum-umd/pasket | pasket/meta/field.py | Python | mit | 3,489 | [
"VisIt"
] | d094501731bb4ef581730a247bef9939d166bd8fba46f4ccca1ab9b31c49006e |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/tdscf/uks.py | Python | apache-2.0 | 10,463 | [
"PySCF"
] | 0557bd3c63d7bab1887edc1880c5df3210bc85aef77b417bf1bce3d64447e0de |
"""
IPOL SIFT
"""
from lib import base_app, build, http
from lib.misc import app_expose, ctime
from lib.base_app import init_app
from cherrypy import TimeoutError
import cherrypy
import os.path
import shutil
######## WARNING OVERLOADING EMPYT_APP #########
######## WARNING OVERLOADING EMPYT_APP #########
########... | juan-cardelino/matlab_demos | ipol_demo-light-1025b85/app_available/82/app.py | Python | gpl-2.0 | 22,321 | [
"Gaussian"
] | 182b3a8ee5e0fd03c4af716097bbdd9f69d2974df440c20a195aac7490885ec5 |
# this is a temporary python file that will help me to understand the likelhood and times of the minimisation
import numpy
def return_likelihood_list(path):
"""
the function returns the log-likelihood of the given file,
the function does not check before/after and does not do anything smart with all the images
ot... | davidwhogg/DeprojectAllGalaxies | scripts/times_and_likelihood.py | Python | mit | 2,979 | [
"Gaussian"
] | ddd7c96eace592c2a26acc4fef6d58db51c91c55df783f92eec1021d0dd05795 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | es_optimization/policies.py | Python | apache-2.0 | 32,194 | [
"Gaussian"
] | 249839298c3f6b89be3d63b5a2710200300b69bd7fdbccd718c92917617e716b |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
=========================================================================
Program: Visualization Toolkit
Module: TestNamedColorsIntegration.py
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.... | sumedhasingla/VTK | Rendering/Volume/Testing/Python/VolumePicker.py | Python | bsd-3-clause | 9,002 | [
"VTK"
] | 9a002fd5cbce8229d2956b8245deb906a3821baf50fe7751285e557f6fb21d1a |
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