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# Lint as: python3
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | tensorflow/lingvo | lingvo/core/layers_with_attention_test.py | Python | apache-2.0 | 132,081 | [
"Gaussian",
"MOE"
] | 3f709d7e70c9dfa37c022dd6e53f53595f3101394b51d9c40388b5370275e8b1 |
# Author: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Copyright (c) 2008, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance
from tvtk.api import tvtk
# Local imports
from mayavi.filters.filter_base import FilterBase
from mayavi.core.pipeline_info import PipelineIn... | dmsurti/mayavi | mayavi/filters/stripper.py | Python | bsd-3-clause | 1,209 | [
"Mayavi"
] | ee4a355fd1a6f92381318abbf1e9fe016a3335117f0b002f03dc066b159d2baa |
#!/usr/bin/env python
"""
Local Processing Unit (LPU) draft implementation.
"""
import importlib
import numbers
import pycuda.gpuarray as garray
from pycuda.tools import dtype_to_ctype
import pycuda.driver as cuda
from pycuda.compiler import SourceModule
import pycuda.elementwise as elementwise
import numpy as np
i... | neurokernel/lamina | lamina/LPU.py | Python | bsd-3-clause | 41,754 | [
"NEURON"
] | 4e734831cc2243e1a380973d843278dff7d3bda9e72646f27ae23c0941a2538a |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''Density functional calculations can be run with either the default
backend library, libxc, or an alternative library, xcfun. See also
example 32-xcfun_as_default.py for how to set xcfun as the default XC
functional library.
'''
from pyscf impor... | sunqm/pyscf | examples/dft/12-camb3lyp.py | Python | apache-2.0 | 1,055 | [
"PySCF"
] | 04fa7f1c4319c1c98481fcd899a546078cdf6cc53cc77ccd19f6137498f0d0f7 |
"""
Trace object types that are inserted into Python list.
"""
import ast
from clike import CLikeTranspiler
def decltype(node):
"""Create C++ decltype statement"""
if is_list(node):
return "std::vector<decltype({0})>".format(value_type(node))
else:
return "decltype({0})".format(value_type(... | lukasmartinelli/py14 | py14/tracer.py | Python | mit | 4,694 | [
"VisIt"
] | 22c63c744977f72bd22d73e5163f89ea62b9b1a5c54c754dec1341e3431015d3 |
#!/opt/local/bin/python2.7
#
# script to take a CSV list of filenames/NetID/name pairs and import to Evernote
#
# Usage: if mfst.csv is of the form
#
# filename,NetID,LastName__FirstNames
#
# then
#
# $ ./enimport.py [options] < mfst.csv
#
# will import into Evernote all the specified files
import hashlib
import bin... | leingang/plg | bin/enimport.py | Python | gpl-3.0 | 9,381 | [
"VisIt"
] | 0d28178ecc3e274b0df4f0ab6bfbeb86d2804bd546b28c027dd0d04bcd8ed1d5 |
'''
This is the implementation of the proof search algorithm. I'm pretty sure that
I know this well enough to just flat out implement it.
The tricky part is going to be merging of the threading and multiprocessing
libraries. I predict that this will be ugly.
We're going to make all of the interface calls properties... | dwhalen/holophrasm | proof_search.py | Python | mit | 30,034 | [
"VisIt"
] | 2f12981de1142826410ee429f3f66ba8160bd81448ac8b4b1deb7a2a7beaaee8 |
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
from scipy.misc.doccer import (extend_notes_in_docstring,
replace_notes_in_docstr... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/scipy/stats/_continuous_distns.py | Python | gpl-3.0 | 186,903 | [
"CRYSTAL",
"Gaussian"
] | 5c00f8381f8e68f91b08e6fe8732a4b3cb6a516b3db3ede7dcaa914da0993d26 |
### AUTHOR: William F. Hooper
### Affiliation: Rensselaer Polytechnic Institute
### Based off of kic.py, included with InteractiveROSETTA
### Additional dependencies: LoopHash, available at github.com/willhooper/LoopHash (might be packaged with this install already)
### Database files iRosetta_Lookup.exe, pdbselect.dat... | schenc3/InteractiveROSETTA | InteractiveROSETTA/scripts/indel.py | Python | gpl-2.0 | 78,517 | [
"PyMOL"
] | 390263cc0ac83f34fd317454fff5a8aef3149db2cdd4751d67e1511e106099d4 |
'''
===============================================
:mod:`gridcells.analysis.bumps` - bump tracking
===============================================
Classes and functions for processing data related to bump attractors.
Classes
-------
.. inheritance-diagram:: gridcells.analysis.bumps
:parts: 2
.. autosummary::
... | lsolanka/gridcells | gridcells/analysis/bumps.py | Python | gpl-3.0 | 12,722 | [
"Gaussian"
] | 2ba2ce48e790fc7c83c994dc21c45202a4037c1d3252ad846642a04717956b02 |
#!/usr/bin/env python
"""
SCHISM native reader
==================================
"""
import numpy as np
from datetime import timedelta, datetime
from opendrift.readers import reader_schism_native
from opendrift.readers import reader_global_landmask
from opendrift.models.oceandrift import OceanDrift
################... | OpenDrift/opendrift | examples/example_schism_native.py | Python | gpl-2.0 | 2,316 | [
"NetCDF"
] | b4309868b107bf6fa8b2e8f950fa632e67f1d8d2992fbf2dbfcdf8a7adfaf534 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import (
absolute_import, division, print_function, unicode_literals)
import six
from six.moves import zip, range, map
import sys
import os.path
import argparse
import numbers
import numpy as np
import scipy.optimize as spo
import scipy.stats as sp... | nicktimko/multiworm | blob_info.py | Python | mit | 12,348 | [
"Gaussian"
] | 4aaa803771af73d0fdf18834fa4a059e26c043bf0065eace727d65547fa1ea6b |
from .decorator import tract_math_operation, set_dictionary_from_use_filenames_as_index
from warnings import warn
import numpy
import nibabel
from nibabel.spatialimages import SpatialImage
from ..tractography import (
Tractography, tractography_to_file, tractography_from_files
)
import sys
import traceback
fro... | BRAINSia/tract_querier | tract_querier/tract_math/operations.py | Python | bsd-3-clause | 31,095 | [
"VTK"
] | 25912bf665d92b1c08087e85d0e0220de8b3cd6996095bb467b4b042b93d72c0 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
import os
import numpy as np
import tables
from scipy import ndimage
from scipy.misc import imsave
import scipy.optimize as opt
from sklearn.cross_decomposition import PLSCanonical
from sklearn.linear_mode... | sealhuang/brainCodingToolbox | braincode/vim2/rfencoding.py | Python | bsd-3-clause | 27,156 | [
"Gaussian"
] | f28012babd46f1c57ada314ca08c0717892a7dc0d5691af16afd2e45000511fc |
from __future__ import print_function, division
import collections
from sympy.core.add import Add
from sympy.core.basic import Basic, Atom
from sympy.core.expr import Expr
from sympy.core.function import count_ops
from sympy.core.logic import fuzzy_and
from sympy.core.power import Pow
from sympy.core.symbol import Sym... | ChristinaZografou/sympy | sympy/matrices/matrices.py | Python | bsd-3-clause | 136,380 | [
"DIRAC",
"Gaussian"
] | bf8c50fa36cbcbcd78d6b99fe757652c27a4cc18da78f43dd7ebe5e3b9bc0c5c |
# ################################################################
#
# Active Particles on Curved Spaces (APCS)
#
# Author: Silke Henkes
#
# ICSMB, Department of Physics
# University of Aberdeen
#
# Author: Rastko Sknepnek
#
# Division of Physics
# School of Engineering, Physics and Math... | sknepneklab/SAMoS | FormerAnalysis/Patches_stresses_defects_lib.py | Python | gpl-3.0 | 29,759 | [
"VTK"
] | 28e4ee5d36801e93a1eaf884e4782505dcdccea6ad9e5ec4b852e6c0225e8e37 |
#Copyright (c) 2014 Sony Computer Entertainment America LLC. See License.txt.
import sys
sys.path.append("./CommonTestScripts")
import System
import Test
import CircuitEditorUtil
doc = atfDocService.OpenNewDocument(editor)
CircuitEditorUtil.SetGlobals(schemaLoader, Schema)
modules = []
annotations = []
connections =... | jethac/ATF | Test/FunctionalTests/CircuitEditorTestScripts/EditSaveCloseAndReopen.py | Python | apache-2.0 | 3,356 | [
"ORCA"
] | d5eb029e1959e62b6a54686eabd82085548f47a0ec0e1e742bed8bfd998db19b |
# -*- coding: utf-8 -*-
# This program is free software; you can redistribute it and/or modify
# it under the terms of the (LGPL) GNU Lesser General Public License as
# published by the Free Software Foundation; either version 3 of the
# License, or (at your option) any later version.
#
# This program is distri... | piotrpawlaczek/suds-jurko | tests/test_cache.py | Python | lgpl-3.0 | 12,588 | [
"Firefly"
] | b76e4363cb95adf0a4be4610d6bbb05e665348568f388846ed61aac6a02786cc |
"""
Miscellaneous utility functions.
"""
__author__ = "Steven Kearnes"
__copyright__ = "Copyright 2014, Stanford University"
__license__ = "BSD 3-clause"
import cPickle
import gzip
import numpy as np
import os
from rdkit import Chem
from rdkit.Chem.Scaffolds import MurckoScaffold
from rdkit_utils import PicklableMo... | rbharath/pande-gas | vs_utils/utils/__init__.py | Python | bsd-3-clause | 10,224 | [
"RDKit"
] | ace4e0471203b59c19d82d51de02bb2c95ed97d2ff4e531743a4ee617b5b0a58 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
urlpatterns = [
# Django Admin
url(r'^admin/', include(admin.site.urls)),
# User manageme... | andresgz/django_todolist | config/urls.py | Python | bsd-3-clause | 1,067 | [
"VisIt"
] | cca160f5061f29efb4353d365589d22f798135218675a2fc0009c3a864912d55 |
import unittest
from test import support
import sys
import random
import math
import array
# Used for lazy formatting of failure messages
class Frm(object):
def __init__(self, format, *args):
self.format = format
self.args = args
def __str__(self):
return self.format ... | harmy/kbengine | kbe/res/scripts/common/Lib/test/test_long.py | Python | lgpl-3.0 | 48,711 | [
"Brian"
] | 9734ccae67c944ab54dde8b40882422f7b60ba466c1787068079c02d2a7f245d |
#!/usr/local/bin/python
import time, sys, os
import numpy as np
np.errstate(invalid='ignore')
from prospect.models import model_setup
from prospect.io import write_results
from prospect import fitting
from prospect.likelihood import lnlike_spec, lnlike_phot, write_log, chi_spec, chi_phot
# --------------
# Read com... | bd-j/prospector | scripts/prospector.py | Python | mit | 9,248 | [
"Gaussian"
] | 7b98da6e80255eaa81dd05592d1238bf59d97d816b6ba88ecfb14403fb902bfe |
# Copyright 2020 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/addons | tensorflow_addons/layers/noisy_dense.py | Python | apache-2.0 | 11,081 | [
"Gaussian"
] | 7d09eb2c743b069c3baffd5b3c04392d58fdcd0b72fc751c040d0d17cc110cce |
"""
Student Views
"""
import datetime
import logging
import uuid
import json
import warnings
from collections import defaultdict
from urlparse import urljoin
from pytz import UTC
from requests import HTTPError
from ipware.ip import get_ip
from django.conf import settings
from django.contrib.auth import logout, authen... | doganov/edx-platform | common/djangoapps/student/views.py | Python | agpl-3.0 | 100,509 | [
"VisIt"
] | 1b139da2587637bd6691eed9831e28e4ee52b6b7088ece41d70099e8ef9521b2 |
# -*- coding: utf-8 -*-
"""
This module implements the GenDendrite class, which implements generic dendrite
logic.
"""
from neuron import h
class GenDendrite(object):
"""This is the model of a generic dendrite.
Attributes:
name - String (Default None)
Name of the dendrite
secs - list (Default... | danielmuellernai/ouropy | gendendrite.py | Python | mit | 4,318 | [
"NEURON"
] | 821dfabcc3e7cc7cc448451efb45061161f95f83c3228b66ffa15bc0d556e4f9 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import json
import logging
import os
import stat
from shutil import rmtree
from time import sleep
from dropbox import client, rest, session
# https://www.dropbox.com/static/developers/... | nandoflorestan/poorbox | poorbox/__init__.py | Python | bsd-3-clause | 9,668 | [
"VisIt"
] | 2afb4259ebaeedbba3a8718a1fd8f2376edcb66c8467b36cb22ef66c1e9d10de |
#!/usr/bin/env python
"""
This script subsamples the alignments of a BAM file. For this a
likelihood (0.0 < p(keep) < 1.0) of keeping all alignments of a read
has to be provided. All alignments of a read are treated the same
(i.e. are discarded or kept).
"""
import argparse
import random
import sys
import pysam
__de... | konrad/kuf_bio_scripts | subsample_bam_file.py | Python | isc | 1,775 | [
"pysam"
] | 5f8daa3ca32b12858376123bc461365a0099bcef56f17d40963f931418ec2eae |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides the Stress class used to create, manipulate, and
calculate relevant properties of the stress tensor.
"""
from pymatgen.core.tensors import SquareTensor
import math
import numpy as np
... | tschaume/pymatgen | pymatgen/analysis/elasticity/stress.py | Python | mit | 3,451 | [
"pymatgen"
] | a13fb310672608767f4faabbf025ef8c0a081c9562eed0316d807f386939afe5 |
import re
import traceback
from PyQt5 import QtCore as QC
from PyQt5 import QtGui as QG
from PyQt5 import QtWidgets as QW
import numpy as n
import scipy.signal as ss
from scipy import poly1d, polyfit
from scipy import ndimage as sn
import scipy.interpolate as si
from lsjuicer.util import helpers
from lsjuicer.sta... | ardoi/datajuicer | lsjuicer/data/pipes/tools.py | Python | gpl-3.0 | 27,557 | [
"Gaussian"
] | 999373c59b712ce6382e91956b88029a088fc0eda19a2b8e8775af9dc3f2e7b0 |
from __future__ import unicode_literals
from django.contrib.auth.models import User
from django.db import models
from django.dispatch import receiver
from django.utils import timezone
from django.utils.encoding import python_2_unicode_compatible
from django.utils.functional import cached_property
from django.utils.tra... | 1tush/reviewboard | reviewboard/accounts/models.py | Python | mit | 13,588 | [
"VisIt"
] | 70c7dfa609f7b2ef4533f8fd9451c9aa0f57751306decc0e87d8311b44fb639e |
import glob, shelve
from geneutils import *
DB_DIR = '../Proteomes/Candida_proteomes/'
BLASTP_RESULTS_DIR = 'resultsp/'
#MAIN_SPECIES = 'S288C'
#SUBJECT_DBS = ['AWRI1631_ABSV01000000', 'AWRI796_ADVS01000000', 'CBS7960_AEWL01000000', \
#'CLIB215_AEWP01000000', 'CLIB324_AEWM01000000', 'CLIB382_AFDG01000000', 'E... | q10/gene | testp.py | Python | bsd-3-clause | 3,442 | [
"BLAST"
] | dfb05f3568b0dfbdb5a54392b33fc9cfea9c4c4fdafd8a55e8f8d335d8a348fe |
# BEGIN_COPYRIGHT
#
# Copyright (C) 2014 CRS4.
#
# This file is part of blast-python.
#
# blast-python is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option)
# ... | crs4/blast-python | setup.py | Python | gpl-3.0 | 4,043 | [
"BLAST"
] | d265ab1db73de48f7d5f96a9e6b3445948b049996207f8fa66b9523d53fef0f1 |
# modified mexican hat wavelet test.py
# spectral analysis for RADAR and WRF patterns
import os, shutil
import time
import pickle
import numpy as np
from scipy import signal, ndimage
import matplotlib.pyplot as plt
from armor import defaultParameters as dp
from armor import pattern
from armor import objects4 as ob
... | yaukwankiu/armor | tests/modifiedMexicanHatTest3.py | Python | cc0-1.0 | 4,018 | [
"Gaussian"
] | 7cd77cce8fcfafcae4c71004e781a762442d13b223b160976620f0f5cf9d4449 |
"""Session object for building, serializing, sending, and receiving messages in
IPython. The Session object supports serialization, HMAC signatures, and
metadata on messages.
Also defined here are utilities for working with Sessions:
* A SessionFactory to be used as a base class for configurables that work with
Sessio... | WillisXChen/django-oscar | oscar/lib/python2.7/site-packages/IPython/kernel/zmq/session.py | Python | bsd-3-clause | 30,948 | [
"Brian"
] | 62af6776910b45820618002b4c0029f82cf8a202cbe1f074c9492fae69a547f0 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import os
import pytest
from mock import Ma... | mattclay/ansible | test/units/galaxy/test_token.py | Python | gpl-3.0 | 3,218 | [
"Galaxy"
] | d8fa8acce1b937febd7aba36ab2c6beeedd93ec2966c3815b9cfc095ce6195b8 |
"""Optimise the cache."""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
from zeroinstall import _, logger
import os, sys
def _already_linked(a, b):
ai = os.stat(a)
bi = os.stat(b)
return (ai.st_dev, ai.st_ino) == (bi.st... | timdiels/0install | zeroinstall/zerostore/optimise.py | Python | lgpl-2.1 | 3,542 | [
"VisIt"
] | 6561e59ddfacc37ba8988d8e57dd9ed6f59f9c7908f475525bec2c3bb31cae75 |
"""
This module contains logic for the home page of the web application, from which the user can visit any page of the
application.
"""
from pyramid.view import view_config
@view_config(route_name='home', renderer='homepage.mako')
def home_view(request):
"""
This function executes the logic for the home page,... | CO600GOL/Game_of_life | ProjectConway/projectconway/views/home.py | Python | mit | 507 | [
"VisIt"
] | f0c8cc304a2c90189e6dea539e36143302e271fd11f7e46c17d2366101c99654 |
import math
import cmath
#
#
def radians(degrees):
return math.pi * degrees / 180.0
def degrees(rad):
return 180.0 * rad / math.pi
def rotate_2d(theta, x, y):
"""Rotate point by theta"""
cangle = cmath.exp(theta * 1j)
cx = cangle * complex(x, y)
return cx.real, cx.imag
def angle(x, y):
... | DaveBerkeley/lasercut | laser/laser.py | Python | gpl-2.0 | 20,008 | [
"VisIt"
] | 2bdc12dec0774aa969804d570076a699b29e33d988a1d93c3aeb8d84ab7553aa |
from collections import deque
import time
import requests
# Constants
BRAZIL = 'br'
EUROPE_NORDIC_EAST = 'eune'
EUROPE_WEST = 'euw'
KOREA = 'kr'
LATIN_AMERICA_NORTH = 'lan'
LATIN_AMERICA_SOUTH = 'las'
NORTH_AMERICA = 'na'
OCEANIA = 'oce'
RUSSIA = 'ru'
TURKEY = 'tr'
# Platforms
platforms = {
BRAZIL: 'BR1',
EUR... | Neil511/Riot-Watcher | riotwatcher/riotwatcher.py | Python | mit | 22,597 | [
"CRYSTAL"
] | 5e78953f5cd5fcea3a7440293c01a6deec425980a9d45e812c5aa64232fd839a |
"""
mbed SDK
Copyright (c) 2011-2013 ARM Limited
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in wr... | maximmbed/mbed | tools/synch.py | Python | apache-2.0 | 11,465 | [
"VisIt"
] | 0debb82ea2367ae1b2beddc8dc15eaad23f5ebc1ad390944c4d421651632cb54 |
"""
Output conversion for Gaussian
==============================
This module contains conversion utilities that is solely written for the
Gaussian computational chemistry program.
.. autosummary::
:toctree:
gauout2PESyaml
"""
import collections
import re
from collections import abc
import itertools
impo... | tschijnmo/FFOMP | FFOMP/ccutils/gau2yaml.py | Python | mit | 10,855 | [
"Gaussian"
] | c3468c8c4d0c0649bb457f49c68d116534c6abb0bfaae90c17995ab19f153e70 |
# Autodetecting setup.py script for building the Python extensions
#
import sys, os, importlib.machinery, re, optparse
from glob import glob
import importlib._bootstrap
import importlib.util
import sysconfig
from distutils import log
from distutils.errors import *
from distutils.core import Extension, setup
from dist... | anbangleo/NlsdeWeb | Python-3.6.0/setup.py | Python | mit | 101,041 | [
"VisIt"
] | 71ffa5a25db9d6e45a08f5356f778e595f62bf001cccd26bc587364a97144a1f |
#
# Copyright (c) 2014 ThoughtWorks, Inc.
#
# Pixelated is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Pixelated is distrib... | pixelated/puppet-pixelated | files/functional-tests/steps/account.py | Python | agpl-3.0 | 2,635 | [
"VisIt"
] | 51c4e2300dccd8096191249ad2f7f18d96bda423bcec54f20fda8f03711bc55d |
# -*- coding: utf-8 -*-
#
# This file is part of Invenio.
# Copyright (C) 2011, 2012 CERN.
#
# Invenio is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 2 of the
# License, or (at your option) any... | ioannistsanaktsidis/invenio | modules/bibauthorid/lib/bibauthorid_webinterface.py | Python | gpl-2.0 | 149,664 | [
"VisIt"
] | 0dd8707efd7729d89f8166f9a2dd7e878cc9554164476388d86fe3a7b4630914 |
#==== Image Centering ====================================================#
#=========================================================================#
def set_fiber_data(self, method, **kwargs):
"""Set the fiber center, diameter, and centroid using the same method
Args
----
method : {'edge', ... | rpetersburg/fiber_properties | legacy_code/image_centering.py | Python | mit | 13,360 | [
"Gaussian"
] | 53f70b75320fcf36b820c797f2bb48d757848abc0cd82fbd11255d48d23c41fb |
# Orca
#
# Copyright 2004-2009 Sun Microsystems Inc.
# Copyright 2010-2013 The Orca Team
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your... | GNOME/orca | src/orca/guilabels.py | Python | lgpl-2.1 | 47,461 | [
"ORCA"
] | de60ffa9c5855630e3bb5c24b7d298449374191fe8ca97d695e3d9d9ec0f9397 |
from __future__ import unicode_literals
from django.db import IntegrityError, connection, models, transaction
from django.test import TestCase
from .models import (
Bar, Director, Favorites, HiddenPointer, ManualPrimaryKey, MultiModel,
Place, RelatedModel, Restaurant, School, Target, UndergroundBar, Waiter,
)... | mewtaylor/django | tests/one_to_one/tests.py | Python | bsd-3-clause | 20,355 | [
"Brian"
] | e3ea417a509c11d5fe04c4dac1d6303746de891a2610c45b19e47db6bb9af95c |
# spud - keep track of photos
# Copyright (C) 2008-2013 Brian May
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... | brianmay/spud | spud/settings.py | Python | gpl-3.0 | 987 | [
"Brian"
] | 62c08bd5d600a08daec9c20e5dbc4334714b29df2022553b1caf613a41005f7a |
# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2013, 2014 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your opt... | lnielsen/invenio | invenio/ext/script/__init__.py | Python | gpl-2.0 | 7,029 | [
"VisIt"
] | 418f3fe8aab61df79767f861dedf85c1a345ed7e5eb838abc70984f5bad39cc3 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-aims/package.py | Python | lgpl-2.1 | 1,934 | [
"Bioconductor"
] | 5307ea7cd329b0b615e124e5759f84d949c43e6cf3e0879b6ad3a73c390dbb2c |
#!/usr/bin/env python
"""Simple parsers for configuration files."""
from __future__ import absolute_import
from __future__ import division
from __future__ import unicode_literals
import collections
import logging
import re
from future.builtins import zip
from future.utils import iteritems
from future.utils import st... | dunkhong/grr | grr/core/grr_response_core/lib/parsers/config_file.py | Python | apache-2.0 | 41,134 | [
"TINKER"
] | 195fb651b1cc9a25adc88fa74d3fbe3195b76ebf0b82ef25916a94d7ab84157b |
"""Read genome build configurations from Galaxy *.loc and bcbio-nextgen resource files.
"""
from six.moves import configparser
import glob
import os
import sys
from xml.etree import ElementTree
import toolz as tz
import yaml
from bcbio import utils
from bcbio.cwl import cwlutils
from bcbio.distributed import objectst... | biocyberman/bcbio-nextgen | bcbio/pipeline/genome.py | Python | mit | 16,520 | [
"Galaxy"
] | f83c7695cb376c853981565d67b88ad348e7635f4f14d74de24d50b334cbafa4 |
###############################################################################
#
# $Id: stretcher.py 585 2010-12-15 05:21:28Z weegreenblobbie $
#
###############################################################################
from Nsound import *
# Read in the wavefile.
a1 = AudioStream("Temperature_in.wav")
# Gra... | weegreenblobbie/nsound | src/examples/stretcher.py | Python | gpl-2.0 | 1,481 | [
"Gaussian"
] | af6d8b1d6777c2e7904b48798f88f487d8f26e67ef4318b4f68ff3d505e1f8e7 |
#################################################################################
# File Name: rmsdAnalysis.py
# Author: Kory Melton
# Date: 6/28/17
# Project: ProteinAnalysis
# Purpose: This file will define and implement the rmsdAnalysis class
# to allow the easy use of analyz... | melt6457/MMProteinAnalysis | Source/rmsdAnalysis.py | Python | mit | 7,068 | [
"VMD"
] | 13ff21d842f356112eeec49de7b24aa5c9d4ba4d5e8e0da84269ee225ca134b7 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
from __future__ import (absolute_import, divi... | mganeva/mantid | Framework/PythonInterface/test/python/plugins/algorithms/ComputeCalibrationCoefVanTest.py | Python | gpl-3.0 | 9,858 | [
"Gaussian"
] | 1be90929626f634cba2a2660892689d38abb7cc66b2e1a4e55b63f5c0f27e1f2 |
import director.vtkAll as vtk
import director.objectmodel as om
from director import lcmUtils
# if bot_lcmgl cannot be important than this module will not be able to
# support lcmgl, but it can still be imported in a disabled state
try:
import bot_lcmgl
import octomap as lcmOctomap
LCMGL_AVAILABLE = True
e... | RobotLocomotion/director | src/python/director/lcmoctomap.py | Python | bsd-3-clause | 5,236 | [
"VTK"
] | a2513d63f94d791f87b6885f300865c39921be2c25cdef0dd6d093d5c4b68c20 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/integrator/FixPositions.py | Python | gpl-3.0 | 1,965 | [
"ESPResSo"
] | ae502a91e27e08f19e6f7d01cfbb84722bee3ad3f5e26c934153e02b9729acb0 |
"""
@author: rhallmen
@date: 24.06.2017
"""
from antlr4 import *
from sxlLexer import sxlLexer
from sxlParser import sxlParser
from sxlVisitor import sxlVisitor
class Signal(object):
def __init__(self, name):
self.name = name
self.position = None
self.mode = None
self.isInput = Non... | nussbrot/AdvPT | python/SignalVisitor.py | Python | mit | 3,895 | [
"VisIt"
] | c93e602c42c4df1b9988f2ff4a5e06ba7c8d77c1e2bd1b44b34086a49db6885c |
"""
Browser set up for acceptance tests.
"""
# pylint: disable=no-member
# pylint: disable=unused-argument
from base64 import encodestring
from json import dumps
from logging import getLogger
import requests
from django.conf import settings
from django.core.management import call_command
from lettuce import after, b... | Edraak/edraak-platform | common/djangoapps/terrain/browser.py | Python | agpl-3.0 | 10,736 | [
"VisIt"
] | 9bc2134be5314ae47d3ca7acff4a97843f174c7c14081440cc01e3d31b5b8f08 |
# """
#
# Stuff to make multi-D dispersion spectra, for instance for Mayavi ...
# For now this works only for 4 curves, to give 3 dimensions.
#
# """
#
# import sys
# import numpy as np
# #import matplotlib.pyplot as plt
#
# import pycs.gen.util as util
# import pycs.gen.lc as lc
# import pycs.gen.ml as ml
#
#
# ... | COSMOGRAIL/PyCS | pycs/play/fit/multispec.py | Python | gpl-3.0 | 3,194 | [
"Mayavi"
] | 4b042df90cd56d08a5f15d3d739f5fc363a37be0dd43b08a9c9cc6aecf3992d9 |
#!/usr/bin/python
#
# Flickr API implementation
#
# Inspired largely by Michele Campeotto's flickrclient and Aaron Swartz'
# xmltramp... but I wanted to get a better idea of how python worked in
# those regards, so I mostly worked those components out for myself.
#
# http://micampe.it/things/flickrclient
# http://www.a... | crmauceri/VisualCommonSense | code/crawler/flickrapi2.py | Python | mit | 19,386 | [
"Brian",
"VisIt"
] | b30333f9fb4c05ea6e501a6168b97392a71c11e67e94d35d34ccb4e1d204dbb9 |
# Copyright (c) 2000-2010 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | tlksio/tlksio | env/lib/python3.4/site-packages/pylint/pyreverse/diadefslib.py | Python | mit | 8,339 | [
"VisIt"
] | 1276239fa0d9b6036fddf9be81892391340b7fb2826f2a92a77acf4e1f23191e |
# -*- coding: utf-8 -*-
# Copyright (c) 2013 Spotify AB
import cStringIO
import signal
import unittest
from graphwalker import planning
class Thing(tuple):
id = property(lambda self: self[0])
name = property(lambda self: self[1])
outgoing = property(lambda self: self[2])
incoming = property(lambda se... | bartvanherck/python-graphwalker | graphwalker/test/planning_test.py | Python | apache-2.0 | 12,153 | [
"VisIt"
] | cd388e8ef1bc5008edb5bbdb1734078e3953228053566edf2cfad807932a22e9 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | thaim/ansible | lib/ansible/modules/network/avi/avi_hardwaresecuritymodulegroup.py | Python | mit | 3,663 | [
"VisIt"
] | 622a2448c86cf66dd469f73397a2b90d25afaae9e5fa46405cb1e7f927c9c692 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Initialization of LFPy, a Python module for simulating
extracellular potentials.
Group of Computational Neuroscience,
Department of Mathematical Sciences and Technology,
Norwegian University of Life Sciences.
Copyright (C) 2012 Computational Neuroscience Group, NMBU.
... | LFPy/LFPy | LFPy/__init__.py | Python | gpl-3.0 | 3,715 | [
"NEURON"
] | de8143601748f1719b0076ce0090d5526623c86798ae85b49798138b78a266c5 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | albertomurillo/ansible | lib/ansible/modules/cloud/kubevirt/kubevirt_vm.py | Python | gpl-3.0 | 15,977 | [
"Galaxy"
] | 262565ff26d635f0dc001f5c784e2e5f993a9b16a929b5a27787653a08ff9dde |
# Made by disKret, as a part of the
# Official L2J Datapack Project, please visit
# http://forum.l2jdp.com to meet the community behind it, or
# http://l2jdp.com/trac if you need to report a bug.
import sys
from com.l2scoria import Config
from com.l2scoria.gameserver.model.quest import State
from com.l2scoria.gameserv... | zenn1989/scoria-interlude | L2Jscoria-Game/data/scripts/quests/39_RedEyedInvaders/__init__.py | Python | gpl-3.0 | 4,946 | [
"VisIt"
] | 6cf9e05926e588343ee1675f160f476fa23fec0e142b266593838653f3622f3f |
"""
=============================
Generic SpectralModel wrapper
=============================
.. moduleauthor:: Adam Ginsburg <adam.g.ginsburg@gmail.com>
"""
import numpy as np
from pyspeckit.mpfit import mpfit,mpfitException
from pyspeckit.spectrum.parinfo import ParinfoList,Parinfo
import copy
from astropy import log... | vlas-sokolov/pyspeckit | pyspeckit/spectrum/models/model.py | Python | mit | 47,916 | [
"Gaussian"
] | 99808187106775c55e63e5d62528d02c96257d846fe436a60f170022be5e07c6 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the CCX dashboard.
"""
from nose.plugins.attrib import attr
from common.test.acceptance.fixtures.course import CourseFixture
from common.test.acceptance.tests.helpers import UniqueCourseTest, EventsTestMixin
from common.test.acceptance.pages.lms.auto_auth import AutoAut... | ampax/edx-platform | common/test/acceptance/tests/lms/test_ccx.py | Python | agpl-3.0 | 1,656 | [
"VisIt"
] | 25d8f8e7e0c7d9a050aef7590386fd9302dee6363aaada1c2a12e0892fee2047 |
#!/usr/bin/env python
## /*=========================================================================
## Program: Visualization Toolkit
## Module: HeaderTesting.py
## Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
## All rights reserved.
## See Copyright.txt or http://www.kitware.com/Copyright... | mspark93/VTK | Testing/Core/HeaderTesting.py | Python | bsd-3-clause | 17,406 | [
"VTK"
] | 26ba702f1cff3f575e3ed99367db6e260e5d37977cc61c12920bcfa1adfceb44 |
from nanopores import *
from nanopores.physics.exittime import ExitTimeProblem
from dolfin import *
import math
# @Benjamin, Gregor TODO:
# -) check permittivity and surface charge of ahem
# -) what biased voltage to use?
geo_params = dict(
l3 = 30.,
l4 = 15.,
R = 40.,
x0 = [5., 0., 10.], # |x0| > 2.2... | mitschabaude/nanopores | scripts/test_ahem.py | Python | mit | 4,411 | [
"FEFF"
] | 9e9ce3f8bc9c13a3e3f3486e90dfb4c3b4a31b6509d7d9e438f881595fd7e731 |
import argparse
import csv
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import sklearn.dummy
import sklearn.gaussian_process
import sklearn.linear_model
import sklearn.kernel_approximation
LABEL_COL = 4
INPUT_COLS = 7, 9, 11, 13, 15
INPUT_DIM = len(INPUT_COLS)
INPUT_ROW_VALID = lambda row: ... | alasdairtran/mclearn | projects/jakub/redshift_regression/photometric_redshift.py | Python | bsd-3-clause | 6,307 | [
"Galaxy"
] | 35e26a1d187441b683bda844f4c2eccbc8e24417c18e82a75d730b2207334094 |
# PyCal - Python web calendar
#
# Copyright (C) 2004-6 Ray Osborn
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later versio... | rayosborn/pycal | src/pycal/Event.py | Python | lgpl-3.0 | 51,992 | [
"VisIt"
] | 32006a622309cf342d2190d8089f37020dcdcc5ce3e1b091c8364b45f9e41f62 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
... | yannh/ansible-modules-core | files/acl.py | Python | gpl-3.0 | 10,175 | [
"Brian"
] | fe50431a562629d7f2fd993e12abaed68494c1d9c4aa2e6776921806e357110b |
"""Module containing physical constants and `NamedTuple`s to store molecular orbitals, shell, etc.
Index
-----
.. currentmodule:: nanoqm.common
.. autosummary::
DictConfig
change_mol_units
getmass
number_spherical_functions_per_atom
retrieve_hdf5_data
is_data_in_hdf5
store_arrays_in_hdf5
A... | SCM-NV/qmworks-namd | nanoqm/common.py | Python | mit | 13,045 | [
"CP2K"
] | 58ee3b28729a9b4c28590bb3f815d51b62caf83abd7a3a5f72d7f5872550a86e |
#
# Copyright (C) 2000 greg Landrum
#
""" unit testing code for cross validation """
from __future__ import print_function
import os
import unittest
from rdkit import RDConfig
from rdkit import RDRandom
from rdkit.ML.DecTree import CrossValidate
from rdkit.ML.DecTree import randomtest
from rdkit.TestRunner import r... | rvianello/rdkit | rdkit/ML/DecTree/UnitTestXVal.py | Python | bsd-3-clause | 2,793 | [
"RDKit"
] | f5324324af795008ff42df2cef4d709f3ab3840ecd56bb38a007055c78d237b2 |
#!/usr/bin/env python
#
# $File: utils.py $
# $LastChangedDate$
# $Rev$
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free softwar... | BoPeng/simuPOP | src/utils.py | Python | gpl-2.0 | 136,911 | [
"VisIt"
] | d9d39e3c5e5241c8c9b1c7a4c5c75a892dc2b1f0b7eed1dd8f203163b64cadf8 |
# This file is part of QuTiP: Quantum Toolbox in Python.
#
# Copyright (c) 2011 and later, Paul D. Nation and Robert J. Johansson.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
... | zasdfgbnm/qutip | qutip/bloch3d.py | Python | bsd-3-clause | 21,732 | [
"Mayavi"
] | cc1bfdf8202a9117b116e6edea1a88f74d6e221b4805c966b665668699bc072f |
from rest_framework import status
from rest_framework.response import Response
from rest_framework.views import APIView
from django.db.models import Q
from epl.models import Teamrecord, Players, Teams, Stats, Games
from epl.serializers import TeamRecordSerializer, PlayerRecordSerializer, TeamsSerializer, StatsSerialize... | TeamEmily/Emily_server | epl/views.py | Python | mit | 19,515 | [
"CRYSTAL"
] | dcf4726f2d067e89807a30e1df7d5857b63dd6dee73039a2ac06c23627c2bda2 |
#!/usr/bin/env python2
# Copyright (C) 2012 W. Trevor King <wking@drexel.edu>
# Copyright (C) 2012 Sebastian Pipping <sebastian@pipping.org>
# Copyright (C) 2013 Brian dolbec <dolsen@gentoo.org>
# Licensed under GPL v2 or later
# This script should be run from the root of the catalyst source.
# source the testpath fil... | proneetv/catalyst | doc/make_target_table.py | Python | gpl-2.0 | 1,224 | [
"Brian"
] | dfbcf32394afc0ada4ac14435d9918c22429841f30c331509b2df3f8dcdaf3a3 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | jralls/gramps | gramps/plugins/webreport/event.py | Python | gpl-2.0 | 18,906 | [
"Brian"
] | 9893129f17c02551f80dd049b0d9b0e9a49837c5babef7542c74bb2a9d7421aa |
#!/usr/bin/env python
# Copyright 2014-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/cc/eom_uccsd.py | Python | apache-2.0 | 124,148 | [
"PySCF"
] | f76fd934800ee28b38e22d1295b79245097dbdc55d57010e15f8d51bb402baf4 |
#
# Copyright (C) 2010-2011, 2011 Canonical Ltd. All Rights Reserved
#
# This file is part of txzookeeper.
#
# Authors:
# Kapil Thangavelu
#
# txzookeeper is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Fou... | racker/txzookeeper | txzookeeper/tests/test_client.py | Python | gpl-3.0 | 40,264 | [
"MOOSE"
] | d33407e58cd42d396dbdcdbe145738c8d49b9817d96e027545d24ece709abf9c |
import os, string, tempfile, shutil
from subprocess import Popen
from ase.io import write
from ase.units import Bohr
class Bader:
'''class for running bader analysis and extracting data from it.
The class runs bader, extracts the charge density and outputs it
to a cube file. Then you call different funct... | askhl/ase | ase/calculators/jacapo/utils/bader.py | Python | gpl-2.0 | 6,698 | [
"ASE"
] | 8cb1222ce09b579db35de20dee5a211ffc122d7ae3c0d80708808ff68f6f3ddc |
''' CacheFeederAgent
This agent feeds the Cache tables with the outputs of the cache commands.
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN CacheFeederAgent
:end-before: ##END
:dedent: 2
:caption: CacheFeederAgent options
'''
__RCSID__ = '$Id$'
from DIRAC import S_OK
from DIRAC.Core.Bas... | fstagni/DIRAC | ResourceStatusSystem/Agent/CacheFeederAgent.py | Python | gpl-3.0 | 6,604 | [
"DIRAC"
] | aecd72fce5d4b0574e386c742d44772f219c7163d4644efb65d6d90c6f606b6e |
# !usr/bin/env python
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2018-10-11 17:51:43
# @Last modified by: Brian Cherinka
# @Last Modified time: 2018-11-29 17:23:15
from __future__ import print_function, division, absolute_import
import marvin.tools
impo... | sdss/marvin | python/marvin/contrib/vacs/visual_morph.py | Python | bsd-3-clause | 7,457 | [
"Brian"
] | 04df6468800c578d044bb0d7cd44d86b4241f8f6e236db29a61e9b186e97b8cd |
# Copyright (c) 2013 Huan Do, http://huan.do
import ast
import environment
from future_finder import FutureFinder
class FutureVisitor(object):
def __init__(self, env):
self.env = env
self.tree = env.tree
def traverse(self):
future_finder = FutureFinder(self.env)
future_finder... | huan/Underscore | underscore/future_visitor.py | Python | mit | 618 | [
"VisIt"
] | 98545aa9418ebc68e7bb75ba5bebc643dc1a56b6b4d1ca00a69ca7518983d14a |
#!/usr/bin/env python
# This example shows how to load a 3D image into VTK and then reformat
# that image into a different orientation for viewing. It uses
# vtkImageReslice for reformatting the image, and uses vtkImageActor
# and vtkInteractorStyleImage to display the image. This InteractorStyle
# forces the camera... | naucoin/VTKSlicerWidgets | Examples/ImageProcessing/Python/ImageSlicing.py | Python | bsd-3-clause | 4,168 | [
"VTK"
] | 6a599f4d09525cb4aa861abfface71388a2c9079846e0649fc2a94310944231e |
# pylint: disable=missing-docstring
from lettuce import step, world
SELECTORS = {
'spinner': '.video-wrapper .spinner',
'controls': '.video-controls',
}
# We should wait 300 ms for event handler invocation + 200ms for safety.
DELAY = 0.5
@step('I have uploaded subtitles "([^"]*)"$')
def i_have_uploaded_sub... | fintech-circle/edx-platform | cms/djangoapps/contentstore/features/video.py | Python | agpl-3.0 | 2,082 | [
"VisIt"
] | bbe92b381904249ad9ef4368d501293ca996b0d4972e8167491cf61fa6bc89cc |
import commands
import os
import Queue
import settings
import time
import threading
import serial
import sys
import traceback
from thirtybirds_2_0.Network.manager import init as network_init
from thirtybirds_2_0.Updates.manager import init as updates_init
class Network(object):
def __init__(self, hostname, netwo... | andycavatorta/oratio | Roles/avl-medulla/main.py | Python | mit | 11,212 | [
"CRYSTAL"
] | a51d99384cf1886ad35779380db898c44ec3e3e240a8daf530855bb7feb388f0 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# create a rendering window and renderer
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRen... | timkrentz/SunTracker | IMU/VTK-6.2.0/Filters/Modeling/Testing/Python/TestSpherePuzzleArrows.py | Python | mit | 1,865 | [
"VTK"
] | 31505c93199947928204cf9e460cc45b404bed9826630a892b869222dd0c14bb |
#
# Author: Henrique Pereira Coutada Miranda
# Run a GW calculation using yambo
#
from __future__ import print_function
from builtins import range
from yambopy import *
from qepy import *
import argparse
yambo = "yambo"
p2y = "p2y"
folder='bse'
def doublegrid():
global folder
folder = "%s_dbg"%folder
data... | henriquemiranda/yambo-py | tutorial/mos2/bse_mos2.py | Python | bsd-3-clause | 4,093 | [
"Yambo"
] | ade5c6561fd66873a40f35a86582f9936447ade18f37d61dba751b9cac38e99f |
#!/usr/bin/env python
from __future__ import division
from optparse import OptionParser
import rospy
import rosparam
import copy
# import cv: open cv 1 not used
import cv2
import numpy as np
import threading
import dynamic_reconfigure.server
from cv_bridge import CvBridge, CvBridgeError
from sensor_msgs.msg import Imag... | florisvb/multi_tracker | nodes/delta_video_simplebuffer.py | Python | mit | 9,513 | [
"Firefly"
] | 52dde3f4c5a5c950124675743edfffef24c2b249ba9d1ac73e4d940bfe3e31a8 |
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | sunqm/pyscf | pyscf/pbc/__init__.py | Python | apache-2.0 | 943 | [
"PySCF"
] | f30fdd7b0c166a9f187489e01235c54974aa5bf7d32bdfe77edb0d5e8f32090f |
# Copyright 2020 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/experimental/distributions/mvn_precision_factor_linop.py | Python | apache-2.0 | 11,578 | [
"Gaussian"
] | 7ae6e0a91f670692f32f39eaa088b399936d7bb8cdd4261c7cb03cf7e4fdad75 |
# coding=utf-8
# octopus在etcd中的根节点
ROOT_NODE = '/octopus'
# service信息在etcd中的节点
SERVICE_NODE = ROOT_NODE + '/service'
# config信息在etcd中的节点
CONFIG_NODE = ROOT_NODE + '/config'
# locker 信息在etcd中的节点
LOCKER_NODE = ROOT_NODE + '/locker'
# logger_name
LOGGER_NAME = 'octopus'
class SERVICE_ACTION:
"""
service 变更操作
... | ideascf/octopus | constant.py | Python | mit | 1,208 | [
"Octopus"
] | 5573b8ba8bc9ff30015b85facfbc48b6d0d4352798062d0191f97dd8fbbf965c |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright 2010 British Broadcasting Corporation and Kamaelia Contributors(1)
#
# (1) Kamaelia Contributors are listed in the AUTHORS file and at
# http://www.kamaelia.org/AUTHORS - please extend this file,
# not this notice.
#
# Licensed under the Apache License,... | sparkslabs/kamaelia | Sketches/MPS/BugReports/FixTests/Kamaelia/Kamaelia/Device/DVB/Parse/ParseServiceDescriptionTable.py | Python | apache-2.0 | 19,571 | [
"CRYSTAL"
] | c2b6893bf70942efa4eaed7aab4bad87267f126785bb5c92951738a36d5b3cae |
# !usr/bin/env python2
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2017-05-19 16:08:47
# @Last modified by: Brian Cherinka
# @Last Modified time: 2017-07-30 19:12:14
from __future__ import print_function, division, absolute_import
from tests.api.conftest ... | sdss/marvin | tests/api/test_plate.py | Python | bsd-3-clause | 3,385 | [
"Brian",
"Galaxy"
] | 03183b7ce6b852cf8f52977226d3f097015d3a5032bf6c5de8f95afc95b19d89 |
"""
Encoding and decoding for dirac, Ids:
i -> int
I -> long
f -> float
b -> bool
s -> string
z -> datetime
n -> none
l -> list
t -> tuple
d -> dictionary
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
__RCSID__ = "$Id$"
from past.builtins imp... | yujikato/DIRAC | src/DIRAC/Core/Utilities/DEncode.py | Python | gpl-3.0 | 15,157 | [
"DIRAC"
] | 72a85d8051e6e7356b4bf26fe2e04512ed16f56a89b49e3daa7170125cdd9c8f |
# -*- coding: utf-8 -*-
'''
*GSASIIstrMath - structure math routines*
-----------------------------------------
'''
########### SVN repository information ###################
# $Date: 2018-06-13 20:58:28 +0300 (Wed, 13 Jun 2018) $
# $Author: vondreele $
# $Revision: 3433 $
# $URL: https://subversion.xray.aps.a... | AntonGagin/GSAS_USE | patchSystErrors/modifiedOld/GSASIIstrMath.py | Python | gpl-3.0 | 243,705 | [
"CRYSTAL",
"Gaussian"
] | 9ab9a1b9cb89c0a43c16fc673f7ead9ea561f11cd96b54c7fb7ebd826533268f |
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