Ribozyme stringlengths 2 37 | Organism stringclasses 56
values | Variable_reactant stringlengths 2 100 ⌀ | Kobs stringlengths 1 19 ⌀ | Unit_Kobs stringclasses 11
values | km stringclasses 287
values | Unit_Km stringclasses 11
values | kcat stringclasses 262
values | Unit_Kcat stringclasses 9
values | km_kcat stringlengths 1 16 ⌀ | Unit_Kcat/Km stringclasses 30
values | Kcleav stringclasses 52
values | Unit_Kcleav stringclasses 3
values | Commentary[Temp] stringclasses 29
values | Commentary[pH] stringclasses 34
values | Commentary[Mutant] stringlengths 2 89 ⌀ | Commentary[Others] stringlengths 3 94 ⌀ | pubmed_id stringclasses 164
values | Source stringclasses 4
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SMRZ-1 | NA | G27 | 0,0070 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13G | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0.0067 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13U | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0.0171 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13C, C23U | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0,0153 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13G,23A, A24G | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0.0151 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13C,C23A | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0,0098 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13C, A24G | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
SMRZ-1 | NA | G27 | 0.0086 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 60°C | 7.4 | A13C, C23G | 20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM | 39374779 | Figure |
YL GUC1 (Gal7) | NA | Gal7 mRNA | 0.03796 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC2 (Gal7) | NA | Gal7 mRNA | 0.08522 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC3 (Gal7) | NA | Gal7 mRNA | 0.02993 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC5 (Gal7) | NA | Gal7 mRNA | 0.02336 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol2 (Gal7) | NA | Gal7 mRNA | 9.49 × 10^-6 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol3 (Gal7) | NA | Gal7 mRNA | 0.187 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol4 (Gal7) | NA | Gal7 mRNA | 0.1509 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol5 (Gal7) | NA | Gal7 mRNA | 1.103 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol6 (Gal7) | NA | Gal7 mRNA | 0.3625 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend1 (Gal7) | NA | Gal7 mRNA | 0.2644 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend2 (Gal7) | NA | Gal7 mRNA | 1.761 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend3 (Gal7) | NA | Gal7 mRNA | 0.02365 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend4 (Gal7) | NA | Gal7 mRNA | 0.09024 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend5 (Gal7) | NA | Gal7 mRNA | 0.03763 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend6 (Gal7) | NA | Gal7 mRNA | 0.6823 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
FMN act1 (Gal7) | NA | Gal7 mRNA | 0.05396 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
FMN act6 (Gal7) | NA | Gal7 mRNA | 0.009182 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
FMN inh2 (Gal7) | NA | Gal7 mRNA | 1.34 × 10^-5 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
FMN inh3 (Gal7) | NA | Gal7 mRNA | 0.01282 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
FMN inh4 (Gal7) | NA | Gal7 mRNA | 6.14 × 10^-6 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
FMN inh5 (Gal7) | NA | Gal7 mRNA | 0.003411 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN | bioRxiv_560155 | Table |
YL GUC1b (Bcl2) | NA | Bcl2 mRNA | 0.2349 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC3b (Bcl2) | NA | Bcl2 mRNA | 0.1121 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC4b (Bcl2) | NA | Bcl2 mRNA | 0.5992 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC5b (Bcl2) | NA | Bcl2 mRNA | 0.1331 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
YL GUC6b (Bcl2) | NA | Bcl2 mRNA | 0.3052 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol1b (Bcl2) | NA | Bcl2 mRNA | 0.4587 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol2b (Bcl2) | NA | Bcl2 mRNA | 0.554 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol3b (Bcl2) | NA | Bcl2 mRNA | 0.1539 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol4b (Bcl2) | NA | Bcl2 mRNA | 0.0583 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol5b (Bcl2) | NA | Bcl2 mRNA | 0.2084 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Pistol6b (Bcl2) | NA | Bcl2 mRNA | 0.224 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend1b (Bcl2) | NA | Bcl2 mRNA | 0.01465 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend2b (Bcl2) | NA | Bcl2 mRNA | 0.9564 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend3b (Bcl2) | NA | Bcl2 mRNA | 1.035 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend4b (Bcl2) | NA | Bcl2 mRNA | 0.9308 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
Extend5b (Bcl2) | NA | Bcl2 mRNA | 0.8098 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | NA | NA | 10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl | bioRxiv_560155 | Table |
QT51 | NA | NA | 0.06 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | -7°C | 9 | NA | 50 mM MgCl2, 50 mM CHES-KOH | bioRxiv_617851 | Text |
Kin.46 ribozyme 119 derivative | NA | ATP-γ-S | 0.0185 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | RT | 7 | up119 lw119 | 200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S | KoreanChemSoc1038 | Table |
Kin.46 ribozyme 119 derivative | NA | ATP-γ-S | 0.0001 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | RT | 7 | up119 drd lw119 | 200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S | KoreanChemSoc1038 | Table |
Kin.46 ribozyme 103 derivative | NA | ATP-γ-S | 0.0462 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | RT | 7 | up103 lw103 | 200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S | KoreanChemSoc1038 | Table |
Kin.46 ribozyme 103 derivative | NA | ATP-γ-S | 0.00005 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | RT | 7 | up103 drd lw103 | 200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S | KoreanChemSoc1038 | Table |
DNAzyme analog | null | null | NA | null | 46.3 | uM | 10.2 | min^-1 | 0.22 | µM^-1·min^-1 | NA | NA | NA | NA | NA | 350nm, 0.3W light irradiation. | 21080636 | Text |
T30695 DNAzyme | null | MPIX | NA | null | 9.8 | uM | 0.89 | min^-1 | 1513 | M^-1s^-1 | null | null | Room | 7.5 | WT | 0.6 μM Pb^2+ | 31414597 | Text |
T30695 DNAzyme | null | MPIX | NA | null | null | null | null | null | 1675.3 | M^-1s^-1 | null | null | Room | 7.5 | WT | 0.4 mM Zn^2+ | 31414597 | Text |
ScThg1 | Eukarya | Full-length tRNAHisA73 | 3.6 | min^-1 | null | null | null | null | 1675.3 | M^-1s^-1 | null | null | Room | 7.5 | WT | 0.4 mM Zn^2+ | bioRxiv581837 | Table |
AcaTLP2 | amoebae Acanthamoeba castellanii | 8 bp RNA duplexes | 0.63 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
AcaTLP2 | amoebae Acanthamoeba castellanii | 7 bp RNA duplexes | 0.45 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
AcaTLP2 | amoebae Acanthamoeba castellanii | 5'-truncated tRNA | 4.9 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
DdiTLP4 | eukaryotic slime mold Dictyostelium discoideum | 8 bp RNA duplexes | 1.9 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
DdiTLP4 | eukaryotic slime mold Dictyostelium discoideum | 7 bp RNA duplexes | 3.45 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
DdiTLP4 | eukaryotic slime mold Dictyostelium discoideum | 5'-truncated tRNA | 0.71 | min^-1 | null | null | null | null | null | null | null | null | null | NA | WT | NA | bioRxiv581837 | Table |
NAD+-II riboswitch | NA | NMN | 0.39 | s^-1 | null | null | null | null | null | null | null | null | null | NA | A57AP | 20 nM Mg2+ | 36610789 | Text |
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