Ribozyme
stringlengths 2
37
| Organism
stringclasses 56
values | Variable_reactant
stringlengths 2
100
⌀ | Kobs
stringlengths 1
19
⌀ | Unit_Kobs
stringclasses 11
values | km
stringclasses 287
values | Unit_Km
stringclasses 11
values | kcat
stringclasses 262
values | Unit_Kcat
stringclasses 9
values | km_kcat
stringlengths 1
16
⌀ | Unit_Kcat/Km
stringclasses 30
values | Kcleav
stringclasses 52
values | Unit_Kcleav
stringclasses 3
values | Commentary[Temp]
stringclasses 29
values | Commentary[pH]
stringclasses 34
values | Commentary[Mutant]
stringlengths 2
89
⌀ | Commentary[Others]
stringlengths 3
94
⌀ | pubmed_id
stringclasses 164
values | Source
stringclasses 4
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SMRZ-1
|
NA
|
G27
|
0,0070
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13G
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0.0067
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13U
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0.0171
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13C, C23U
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0,0153
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13G,23A, A24G
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0.0151
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13C,C23A
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0,0098
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13C, A24G
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
SMRZ-1
|
NA
|
G27
|
0.0086
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
60°C
|
7.4
|
A13C, C23G
|
20 mM Tris-HCl, 20 mM KCl, 1 mM MgCl2, 0.1 mM CuSO4, 1.0 mM SAM
|
39374779
|
Figure
|
YL GUC1 (Gal7)
|
NA
|
Gal7 mRNA
|
0.03796
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC2 (Gal7)
|
NA
|
Gal7 mRNA
|
0.08522
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC3 (Gal7)
|
NA
|
Gal7 mRNA
|
0.02993
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC5 (Gal7)
|
NA
|
Gal7 mRNA
|
0.02336
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol2 (Gal7)
|
NA
|
Gal7 mRNA
|
9.49 × 10^-6
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol3 (Gal7)
|
NA
|
Gal7 mRNA
|
0.187
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol4 (Gal7)
|
NA
|
Gal7 mRNA
|
0.1509
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol5 (Gal7)
|
NA
|
Gal7 mRNA
|
1.103
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol6 (Gal7)
|
NA
|
Gal7 mRNA
|
0.3625
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend1 (Gal7)
|
NA
|
Gal7 mRNA
|
0.2644
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend2 (Gal7)
|
NA
|
Gal7 mRNA
|
1.761
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend3 (Gal7)
|
NA
|
Gal7 mRNA
|
0.02365
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend4 (Gal7)
|
NA
|
Gal7 mRNA
|
0.09024
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend5 (Gal7)
|
NA
|
Gal7 mRNA
|
0.03763
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend6 (Gal7)
|
NA
|
Gal7 mRNA
|
0.6823
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
FMN act1 (Gal7)
|
NA
|
Gal7 mRNA
|
0.05396
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
FMN act6 (Gal7)
|
NA
|
Gal7 mRNA
|
0.009182
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
FMN inh2 (Gal7)
|
NA
|
Gal7 mRNA
|
1.34 × 10^-5
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
FMN inh3 (Gal7)
|
NA
|
Gal7 mRNA
|
0.01282
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
FMN inh4 (Gal7)
|
NA
|
Gal7 mRNA
|
6.14 × 10^-6
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
FMN inh5 (Gal7)
|
NA
|
Gal7 mRNA
|
0.003411
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl, 200 µM FMN
|
bioRxiv_560155
|
Table
|
YL GUC1b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.2349
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC3b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.1121
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC4b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.5992
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC5b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.1331
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
YL GUC6b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.3052
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol1b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.4587
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol2b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.554
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol3b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.1539
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol4b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.0583
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol5b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.2084
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Pistol6b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.224
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend1b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.01465
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend2b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.9564
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend3b (Bcl2)
|
NA
|
Bcl2 mRNA
|
1.035
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend4b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.9308
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
Extend5b (Bcl2)
|
NA
|
Bcl2 mRNA
|
0.8098
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
37°C
|
NA
|
NA
|
10 mM MgCl2, 50 mM Tris pH 7.5, 100 mM NaCl, 25 mM KCl
|
bioRxiv_560155
|
Table
|
QT51
|
NA
|
NA
|
0.06
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
-7°C
|
9
|
NA
|
50 mM MgCl2, 50 mM CHES-KOH
|
bioRxiv_617851
|
Text
|
Kin.46 ribozyme 119 derivative
|
NA
|
ATP-γ-S
|
0.0185
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
RT
|
7
|
up119 lw119
|
200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S
|
KoreanChemSoc1038
|
Table
|
Kin.46 ribozyme 119 derivative
|
NA
|
ATP-γ-S
|
0.0001
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
RT
|
7
|
up119 drd lw119
|
200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S
|
KoreanChemSoc1038
|
Table
|
Kin.46 ribozyme 103 derivative
|
NA
|
ATP-γ-S
|
0.0462
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
RT
|
7
|
up103 lw103
|
200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S
|
KoreanChemSoc1038
|
Table
|
Kin.46 ribozyme 103 derivative
|
NA
|
ATP-γ-S
|
0.00005
|
min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
NA
|
RT
|
7
|
up103 drd lw103
|
200 mM KCl, 150 mM Pipes-KOH, 50 mM MgCl2, 10 mM ATP-γ-S
|
KoreanChemSoc1038
|
Table
|
DNAzyme analog
| null | null |
NA
| null |
46.3
|
uM
|
10.2
|
min^-1
|
0.22
|
µM^-1·min^-1
|
NA
|
NA
|
NA
|
NA
|
NA
|
350nm, 0.3W light irradiation.
|
21080636
|
Text
|
T30695 DNAzyme
| null |
MPIX
|
NA
| null |
9.8
|
uM
|
0.89
|
min^-1
|
1513
|
M^-1s^-1
| null | null |
Room
|
7.5
|
WT
|
0.6 μM Pb^2+
|
31414597
|
Text
|
T30695 DNAzyme
| null |
MPIX
|
NA
| null | null | null | null | null |
1675.3
|
M^-1s^-1
| null | null |
Room
|
7.5
|
WT
|
0.4 mM Zn^2+
|
31414597
|
Text
|
ScThg1
|
Eukarya
|
Full-length tRNAHisA73
|
3.6
|
min^-1
| null | null | null | null |
1675.3
|
M^-1s^-1
| null | null |
Room
|
7.5
|
WT
|
0.4 mM Zn^2+
|
bioRxiv581837
|
Table
|
AcaTLP2
|
amoebae Acanthamoeba castellanii
|
8 bp RNA duplexes
|
0.63
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
AcaTLP2
|
amoebae Acanthamoeba castellanii
|
7 bp RNA duplexes
|
0.45
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
AcaTLP2
|
amoebae Acanthamoeba castellanii
|
5'-truncated tRNA
|
4.9
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
DdiTLP4
|
eukaryotic slime mold Dictyostelium discoideum
|
8 bp RNA duplexes
|
1.9
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
DdiTLP4
|
eukaryotic slime mold Dictyostelium discoideum
|
7 bp RNA duplexes
|
3.45
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
DdiTLP4
|
eukaryotic slime mold Dictyostelium discoideum
|
5'-truncated tRNA
|
0.71
|
min^-1
| null | null | null | null | null | null | null | null | null |
NA
|
WT
|
NA
|
bioRxiv581837
|
Table
|
NAD+-II riboswitch
|
NA
|
NMN
|
0.39
|
s^-1
| null | null | null | null | null | null | null | null | null |
NA
|
A57AP
|
20 nM Mg2+
|
36610789
|
Text
|
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