Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- pfam_gap_rates/1-cysPrx_C.gap.json +1 -0
- pfam_gap_rates/14-3-3.gap.json +1 -0
- pfam_gap_rates/2-ph_phosp.gap.json +1 -0
- pfam_gap_rates/2OG-Fe_Oxy_2.gap.json +1 -0
- pfam_gap_rates/2_5_RNA_ligase2.gap.json +1 -0
- pfam_gap_rates/3-dmu-9_3-mt.gap.json +1 -0
- pfam_gap_rates/4F5.gap.json +1 -0
- pfam_gap_rates/4HBT_2.gap.json +1 -0
- pfam_gap_rates/7TMR-DISMED2.gap.json +1 -0
- pfam_gap_rates/7TMR-HDED.gap.json +1 -0
- pfam_gap_rates/7TM_GPCR_Srab.gap.json +1 -0
- pfam_gap_rates/7tm_7.gap.json +1 -0
- pfam_gap_rates/A1_Propeptide.gap.json +1 -0
- pfam_gap_rates/A2M_N.gap.json +1 -0
- pfam_gap_rates/AAA_18.gap.json +1 -0
- pfam_gap_rates/AAA_21.gap.json +1 -0
- pfam_gap_rates/AAA_26.gap.json +1 -0
- pfam_gap_rates/AAA_29.gap.json +1 -0
- pfam_gap_rates/AAA_32.gap.json +1 -0
- pfam_gap_rates/AAA_35.gap.json +1 -0
- pfam_gap_rates/ABC_membrane_2.gap.json +1 -0
- pfam_gap_rates/ACT_4.gap.json +1 -0
- pfam_gap_rates/ACT_5.gap.json +1 -0
- pfam_gap_rates/AD.gap.json +1 -0
- pfam_gap_rates/ADH_zinc_N.gap.json +1 -0
- pfam_gap_rates/ADPrib_exo_Tox.gap.json +1 -0
- pfam_gap_rates/ADSL_C.gap.json +1 -0
- pfam_gap_rates/AIG2_2.gap.json +1 -0
- pfam_gap_rates/AIM24.gap.json +1 -0
- pfam_gap_rates/ALAD.gap.json +1 -0
- pfam_gap_rates/ALG3.gap.json +1 -0
- pfam_gap_rates/ALS_ss_C.gap.json +1 -0
- pfam_gap_rates/AMOP.gap.json +1 -0
- pfam_gap_rates/ANAPC4.gap.json +1 -0
- pfam_gap_rates/ANF_receptor.gap.json +1 -0
- pfam_gap_rates/ANTAR.gap.json +1 -0
- pfam_gap_rates/ANTH.gap.json +1 -0
- pfam_gap_rates/AP3B1_C.gap.json +1 -0
- pfam_gap_rates/APOBEC_N.gap.json +1 -0
- pfam_gap_rates/APO_RNA-bind.gap.json +1 -0
- pfam_gap_rates/ARPC4.gap.json +1 -0
- pfam_gap_rates/ASL_C.gap.json +1 -0
- pfam_gap_rates/ATC_hydrolase.gap.json +1 -0
- pfam_gap_rates/ATP_transf.gap.json +1 -0
- pfam_gap_rates/ATPase-cat_bd.gap.json +1 -0
- pfam_gap_rates/AbfB.gap.json +1 -0
- pfam_gap_rates/Abhydrolase_1.gap.json +1 -0
- pfam_gap_rates/Abhydrolase_3.gap.json +1 -0
- pfam_gap_rates/Abhydrolase_5.gap.json +1 -0
- pfam_gap_rates/Acetate_kinase.gap.json +1 -0
pfam_gap_rates/1-cysPrx_C.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "1-cysPrx_C", "n_seqs": 2481, "length": 42, "gap_rates": [0.25110842402257155, 0.20354695687222893, 0.041515517936316, 0.03345425231761386, 0.029423619508262798, 0.027408303103587262, 0.014913341394598953, 0.01007658202337767, 0.8057234985892785, 0.006045949214026602, 0.0032245062474808546, 0.9230149133413946, 0.0012091898428053204, 0.0, 0.0, 0.0, 0.00040306328093510683, 0.00040306328093510683, 0.032648125755743655, 0.0008061265618702137, 0.0016122531237404273, 0.002015316404675534, 0.0032245062474808546, 0.0036275695284159614, 0.004030632809351068, 0.5368802902055623, 0.547359935509875, 0.5602579604997985, 0.06892382103990327, 0.08827085852478839, 0.11003627569528417, 0.1293833131801693, 0.18178153970173316, 0.580814187827489, 0.3567110036275695, 0.3305118903667876, 0.3450221684804514, 0.38170092704554615, 0.4199919387343813, 0.49858927851672713, 0.6166868198307134, 0.8270858524788391], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/14-3-3.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "14-3-3", "n_seqs": 1377, "length": 229, "gap_rates": [0.47785039941902685, 0.289760348583878, 0.2694262890341322, 0.2679738562091503, 0.26506899055918665, 0.26143790849673204, 0.25780682643427744, 0.2541757443718228, 0.2512708787218591, 0.25054466230936817, 0.2476397966594045, 0.2440087145969499, 0.2374727668845316, 0.2113289760348584, 0.2084241103848947, 0.20769789397240376, 0.20406681190994916, 0.19753086419753085, 0.19607843137254902, 0.1924473493100944, 0.19389978213507625, 0.19317356572258534, 0.19317356572258534, 0.19317356572258534, 0.8017429193899782, 0.9353667392883079, 0.8946986201888163, 0.7516339869281046, 0.18373275236020334, 0.17647058823529413, 0.1757443718228032, 0.17501815541031226, 0.17429193899782136, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17356572258533043, 0.17429193899782136, 0.17429193899782136, 0.17429193899782136, 0.17138707334785766, 0.17138707334785766, 0.17066085693536673, 0.17066085693536673, 0.16848220769789396, 0.1692084241103849, 0.16993464052287582, 0.1721132897603486, 0.1721132897603486, 0.1728395061728395, 0.17356572258533043, 0.17429193899782136, 0.1728395061728395, 0.1721132897603486, 0.16993464052287582, 0.1692084241103849, 0.16848220769789396, 0.16993464052287582, 0.16993464052287582, 0.17066085693536673, 0.17066085693536673, 0.16993464052287582, 0.17138707334785766, 0.17429193899782136, 0.18082788671023964, 0.19607843137254902, 0.38198983297022515, 0.4567901234567901, 0.25562817719680464, 0.20116194625998549, 0.18155410312273057, 0.17792302106027597, 0.16848220769789396, 0.1626724763979666, 0.15976761074800291, 0.1568627450980392, 0.15468409586056645, 0.1539578794480755, 0.1539578794480755, 0.1539578794480755, 0.15468409586056645, 0.15758896151053015, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.15758896151053015, 0.15831517792302105, 0.15831517792302105, 0.15904139433551198, 0.15831517792302105, 0.15904139433551198, 0.15976761074800291, 0.15613652868554828, 0.1503267973856209, 0.1532316630355846, 0.1532316630355846, 0.1539578794480755, 0.1532316630355846, 0.1539578794480755, 0.1532316630355846, 0.15177923021060277, 0.15177923021060277, 0.15177923021060277, 0.1830065359477124, 0.15904139433551198, 0.9433551198257081, 0.9310094408133623, 0.15613652868554828, 0.15177923021060277, 0.14960058097313, 0.14814814814814814, 0.14742193173565724, 0.14742193173565724, 0.14596949891067537, 0.1466957153231663, 0.14742193173565724, 0.14742193173565724, 0.14524328249818447, 0.12563543936092955, 0.12926652142338416, 0.1299927378358751, 0.1299927378358751, 0.13071895424836602, 0.12854030501089325, 0.1270878721859114, 0.1270878721859114, 0.12781408859840232, 0.12926652142338416, 0.12854030501089325, 0.1270878721859114, 0.12781408859840232, 0.15904139433551198, 0.1568627450980392, 0.14960058097313, 0.14451706608569354, 0.140159767610748, 0.13435003631082063, 0.12490922294843863, 0.12636165577342048, 0.11982570806100218, 0.11328976034858387, 0.10457516339869281, 0.09586056644880174, 0.09368191721132897, 0.09222948438634714, 0.08932461873638345, 0.08932461873638345, 0.0878721859114016, 0.09222948438634714, 0.0915032679738562, 0.09513435003631082, 0.09658678286129267, 0.09658678286129267, 0.09731299927378359, 0.17719680464778503, 0.10530137981118373, 0.10602759622367465, 0.09731299927378359, 0.09731299927378359, 0.09586056644880174, 0.09513435003631082, 0.09513435003631082, 0.0944081336238199, 0.0944081336238199, 0.0944081336238199, 0.0944081336238199, 0.09586056644880174, 0.09586056644880174, 0.09513435003631082, 0.09658678286129267, 0.09876543209876543, 0.09658678286129267, 0.09658678286129267, 0.09876543209876543, 0.09876543209876543, 0.1009440813362382, 0.10021786492374728, 0.10239651416122005, 0.10021786492374728, 0.10167029774872913, 0.1009440813362382, 0.10021786492374728, 0.1009440813362382, 0.10312273057371096, 0.10602759622367465, 0.10675381263616558, 0.10675381263616558, 0.10457516339869281, 0.10384894698620188, 0.10384894698620188, 0.10312273057371096, 0.10312273057371096, 0.11183732752360204, 0.11692084241103849, 0.12200435729847495, 0.12418300653594772, 0.12563543936092955, 0.13144517066085692, 0.1328976034858388, 0.1336238198983297, 0.14088598402323893, 0.1503267973856209, 0.14524328249818447, 0.14742193173565724, 0.14524328249818447, 0.14524328249818447, 0.14451706608569354, 0.14524328249818447, 0.14742193173565724, 0.14742193173565724, 0.14742193173565724, 0.14814814814814814, 0.14960058097313, 0.1503267973856209, 0.15105301379811184, 0.1503267973856209, 0.15105301379811184, 0.15177923021060277, 0.15177923021060277, 0.15976761074800291, 0.18155410312273057, 0.18736383442265794, 0.18809005083514888, 0.1888162672476398, 0.2018881626724764, 0.20261437908496732, 0.2440087145969499], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/2-ph_phosp.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "2-ph_phosp", "n_seqs": 431, "length": 247, "gap_rates": [0.9025522041763341, 0.802784222737819, 0.7470997679814385, 0.6635730858468677, 0.605568445475638, 0.5707656612529002, 0.5498839907192575, 0.5150812064965197, 0.4918793503480278, 0.4408352668213457, 0.925754060324826, 0.2737819025522042, 0.23433874709976799, 0.17633410672853828, 0.10208816705336426, 0.5777262180974478, 0.06728538283062645, 0.06264501160092807, 0.058004640371229696, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.060324825986078884, 0.05336426914153132, 0.05336426914153132, 0.05336426914153132, 0.05104408352668213, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.04640371229698376, 0.04640371229698376, 0.06264501160092807, 0.06960556844547564, 0.09976798143851508, 0.07424593967517401, 0.04640371229698376, 0.04640371229698376, 0.04408352668213457, 0.04408352668213457, 0.04408352668213457, 0.048723897911832945, 0.04408352668213457, 0.04408352668213457, 0.04640371229698376, 0.04640371229698376, 0.04640371229698376, 0.048723897911832945, 0.048723897911832945, 0.048723897911832945, 0.04408352668213457, 0.23897911832946636, 0.3642691415313225, 0.3642691415313225, 0.48259860788863107, 0.30162412993039445, 0.20417633410672853, 0.058004640371229696, 0.060324825986078884, 0.05568445475638051, 0.05336426914153132, 0.05104408352668213, 0.05568445475638051, 0.05104408352668213, 0.05336426914153132, 0.05568445475638051, 0.05104408352668213, 0.05336426914153132, 0.060324825986078884, 0.06960556844547564, 0.07192575406032482, 0.08352668213457076, 0.19489559164733178, 0.10672853828306264, 0.06264501160092807, 0.05104408352668213, 0.04176334106728538, 0.04176334106728538, 0.048723897911832945, 0.04408352668213457, 0.05336426914153132, 0.12296983758700696, 0.08816705336426914, 0.058004640371229696, 0.07888631090487239, 0.05104408352668213, 0.04176334106728538, 0.05568445475638051, 0.048723897911832945, 0.04176334106728538, 0.03944315545243619, 0.03944315545243619, 0.03944315545243619, 0.03944315545243619, 0.037122969837587005, 0.03480278422273782, 0.030162412993039442, 0.030162412993039442, 0.030162412993039442, 0.03480278422273782, 0.037122969837587005, 0.03480278422273782, 0.025522041763341066, 0.027842227378190254, 0.02320185614849188, 0.02088167053364269, 0.03944315545243619, 0.7935034802784223, 0.04640371229698376, 0.02320185614849188, 0.016241299303944315, 0.013921113689095127, 0.01160092807424594, 0.009280742459396751, 0.009280742459396751, 0.01160092807424594, 0.01160092807424594, 0.009280742459396751, 0.009280742459396751, 0.009280742459396751, 0.009280742459396751, 0.009280742459396751, 0.009280742459396751, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.016241299303944315, 0.02320185614849188, 0.9396751740139211, 0.9419953596287703, 0.9396751740139211, 0.07192575406032482, 0.7935034802784223, 0.9489559164733179, 0.8955916473317865, 0.4617169373549884, 0.013921113689095127, 0.013921113689095127, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.02320185614849188, 0.8468677494199536, 0.8491879350348028, 0.851508120649652, 0.8468677494199536, 0.8329466357308585, 0.030162412993039442, 0.03248259860788863, 0.037122969837587005, 0.016241299303944315, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.01160092807424594, 0.7169373549883991, 0.8352668213457076, 0.8561484918793504, 0.802784222737819, 0.5545243619489559, 0.17865429234338748, 0.29466357308584684, 0.2552204176334107, 0.2088167053364269, 0.1345707656612529, 0.0951276102088167, 0.0951276102088167, 0.09048723897911833, 0.0951276102088167, 0.09976798143851508, 0.10208816705336426, 0.10440835266821345, 0.10440835266821345, 0.10208816705336426, 0.10208816705336426, 0.10208816705336426, 0.09976798143851508, 0.10208816705336426, 0.10904872389791183, 0.9466357308584686, 0.3642691415313225, 0.16937354988399073, 0.12761020881670534, 0.11136890951276102, 0.10208816705336426, 0.09976798143851508, 0.09744779582366589, 0.09744779582366589, 0.0951276102088167, 0.0951276102088167, 0.09744779582366589, 0.09744779582366589, 0.10208816705336426, 0.10440835266821345, 0.11136890951276102, 0.11136890951276102, 0.1136890951276102, 0.1136890951276102, 0.10904872389791183, 0.10672853828306264, 0.10440835266821345, 0.10904872389791183, 0.10672853828306264, 0.09976798143851508, 0.09744779582366589, 0.09744779582366589, 0.09744779582366589, 0.09744779582366589, 0.09744779582366589, 0.09744779582366589, 0.09976798143851508, 0.10440835266821345, 0.10672853828306264, 0.10440835266821345, 0.10672853828306264, 0.11136890951276102, 0.1136890951276102, 0.11600928074245939, 0.11832946635730858, 0.12529002320185614, 0.1368909512761021, 0.15777262180974477, 0.2505800464037123, 0.5174013921113689], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/2OG-Fe_Oxy_2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "2OG-Fe_Oxy_2", "n_seqs": 184, "length": 231, "gap_rates": [0.8804347826086957, 0.30978260869565216, 0.14673913043478262, 0.09782608695652174, 0.08152173913043478, 0.07608695652173914, 0.07065217391304347, 0.07065217391304347, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.20108695652173914, 0.1956521739130435, 0.5054347826086957, 0.4945652173913043, 0.06521739130434782, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.06521739130434782, 0.06521739130434782, 0.5108695652173914, 0.8913043478260869, 0.9184782608695652, 0.6358695652173914, 0.05434782608695652, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.05434782608695652, 0.04891304347826087, 0.05434782608695652, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.043478260869565216, 0.08152173913043478, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04891304347826087, 0.05434782608695652, 0.875, 0.875, 0.059782608695652176, 0.04891304347826087, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.04891304347826087, 0.05434782608695652, 0.07608695652173914, 0.07065217391304347, 0.06521739130434782, 0.06521739130434782, 0.043478260869565216, 0.03804347826086957, 0.03260869565217391, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.059782608695652176, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.043478260869565216, 0.29347826086956524, 0.25, 0.717391304347826, 0.8369565217391305, 0.8967391304347826, 0.8967391304347826, 0.9021739130434783, 0.8967391304347826, 0.8967391304347826, 0.7934782608695652, 0.6358695652173914, 0.1956521739130435, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.3641304347826087, 0.9293478260869565, 0.05434782608695652, 0.05434782608695652, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.8967391304347826, 0.8804347826086957, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.02717391304347826, 0.9130434782608695, 0.9402173913043478, 0.9402173913043478, 0.9402173913043478, 0.9456521739130435, 0.9402173913043478, 0.9402173913043478, 0.9347826086956522, 0.8586956521739131, 0.03260869565217391, 0.021739130434782608, 0.02717391304347826, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.9021739130434783, 0.8967391304347826, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.03260869565217391, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.08695652173913043, 0.1793478260869565, 0.20652173913043478, 0.016304347826086956, 0.016304347826086956, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.043478260869565216, 0.3641304347826087], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/2_5_RNA_ligase2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "2_5_RNA_ligase2", "n_seqs": 1321, "length": 183, "gap_rates": [0.8879636638909917, 0.7827403482210447, 0.7305071915215746, 0.6858440575321726, 0.6510219530658592, 0.6184708554125662, 0.579106737320212, 0.5526116578349735, 0.4996214988644966, 0.4738834216502649, 0.4595003785011355, 0.4481453444360333, 0.43376230128690385, 0.8728236184708554, 0.9091597274791824, 0.8849356548069645, 0.8410295230885693, 0.6252838758516276, 0.4133232399697199, 0.38758516275548827, 0.3542770628311885, 0.33535200605601817, 0.3028009084027252, 0.2573807721423164, 0.9258137774413323, 0.198334595003785, 0.16956850870552612, 0.1453444360333081, 0.11203633610900833, 0.05526116578349735, 0.9265707797123391, 0.9462528387585163, 0.8819076457229371, 0.025738077214231644, 0.02498107494322483, 0.023467070401211203, 0.02195306585919758, 0.021196063588190765, 0.02195306585919758, 0.01968205904617714, 0.02195306585919758, 0.01968205904617714, 0.01968205904617714, 0.01968205904617714, 0.018925056775170326, 0.023467070401211203, 0.14155942467827404, 0.2778198334595004, 0.9197577592732779, 0.9485238455715367, 0.9432248296744891, 0.5079485238455715, 0.059046177138531414, 0.029523088569265707, 0.0174110522331567, 0.01514004542013626, 0.014383043149129448, 0.012112036336109008, 0.010598031794095382, 0.012112036336109008, 0.012112036336109008, 0.012112036336109008, 0.05980317940953823, 0.1506434519303558, 0.9432248296744891, 0.9295987887963664, 0.045420136260408785, 0.02725208175624527, 0.0174110522331567, 0.013626040878122634, 0.011355034065102196, 0.003785011355034065, 0.003028009084027252, 0.003028009084027252, 0.002271006813020439, 0.003028009084027252, 0.003028009084027252, 0.003028009084027252, 0.002271006813020439, 0.002271006813020439, 0.012112036336109008, 0.16502649507948525, 0.24299772899318697, 0.874337623012869, 0.6858440575321726, 0.1514004542013626, 0.09462528387585163, 0.06813020439061317, 0.6177138531415595, 0.004542013626040878, 0.004542013626040878, 0.003028009084027252, 0.003785011355034065, 0.003785011355034065, 0.010598031794095382, 0.9046177138531416, 0.9447388342165026, 0.6707040121120363, 0.10219530658591976, 0.03179409538228615, 0.011355034065102196, 0.006056018168054504, 0.006056018168054504, 0.006813020439061317, 0.006813020439061317, 0.005299015897047691, 0.004542013626040878, 0.005299015897047691, 0.004542013626040878, 0.006056018168054504, 0.006056018168054504, 0.006056018168054504, 0.006056018168054504, 0.006813020439061317, 0.06510219530658592, 0.022710068130204392, 0.018168054504163512, 0.01514004542013626, 0.9417108251324754, 0.02043906131718395, 0.052233156699470096, 0.08327024981074943, 0.14761544284632855, 0.25889477668433003, 0.2687358062074186, 0.7441332323996972, 0.834216502649508, 0.9371688115064345, 0.8039364118092355, 0.6585919757759273, 0.01514004542013626, 0.010598031794095382, 0.00984102952308857, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.009084027252081756, 0.00984102952308857, 0.010598031794095382, 0.013626040878122634, 0.018925056775170326, 0.03179409538228615, 0.06661619984859955, 0.07040121120363362, 0.0757002271006813, 0.09386828160484481, 0.2036336109008327, 0.8856926570779712, 0.9258137774413323, 0.7903103709311128, 0.17638152914458743, 0.17259651778955337, 0.17183951551854657, 0.17486752460257382, 0.17713853141559424, 0.1794095382286147, 0.1809235427706283, 0.8902346707040121, 0.8516275548826646, 0.48448145344436033, 0.3270249810749432, 0.2331566994700984, 0.22861468584405753, 0.22937168811506434, 0.22558667676003027, 0.23164269492808479, 0.22785768357305072, 0.9492808478425435, 0.2392127176381529, 0.2505677517032551, 0.25208175624526874, 0.25965177895533686, 0.2664647993943982, 0.2687358062074186, 0.279333838001514, 0.2922028766086298, 0.32172596517789553, 0.380772142316427, 0.5026495079485238, 0.631339894019682, 0.7486752460257381, 0.8932626797880394], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/3-dmu-9_3-mt.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "3-dmu-9_3-mt", "n_seqs": 1276, "length": 148, "gap_rates": [0.8275862068965517, 0.4952978056426332, 0.23197492163009403, 0.14576802507836992, 0.09952978056426333, 0.06974921630094044, 0.06583072100313479, 0.04623824451410658, 0.04467084639498432, 0.927115987460815, 0.9443573667711599, 0.9278996865203761, 0.9231974921630094, 0.0384012539184953, 0.9443573667711599, 0.03605015673981191, 0.025078369905956112, 0.023510971786833857, 0.022727272727272728, 0.0219435736677116, 0.0219435736677116, 0.02115987460815047, 0.02115987460815047, 0.02115987460815047, 0.02115987460815047, 0.02037617554858934, 0.02037617554858934, 0.02037617554858934, 0.02037617554858934, 0.02586206896551724, 0.9294670846394985, 0.061128526645768025, 0.9467084639498433, 0.050940438871473356, 0.9216300940438872, 0.0274294670846395, 0.023510971786833857, 0.024294670846394983, 0.023510971786833857, 0.02115987460815047, 0.0219435736677116, 0.03134796238244514, 0.03683385579937304, 0.039968652037617555, 0.0438871473354232, 0.08307210031347963, 0.12695924764890282, 0.8675548589341693, 0.9490595611285266, 0.6912225705329154, 0.11912225705329153, 0.11285266457680251, 0.70141065830721, 0.7852664576802508, 0.9255485893416928, 0.8808777429467085, 0.7241379310344828, 0.4663009404388715, 0.07445141065830721, 0.06191222570532915, 0.041536050156739814, 0.03683385579937304, 0.030564263322884012, 0.0219435736677116, 0.016457680250783698, 0.014890282131661442, 0.011755485893416929, 0.0109717868338558, 0.01018808777429467, 0.0109717868338558, 0.9404388714733543, 0.011755485893416929, 0.0109717868338558, 0.0109717868338558, 0.012539184952978056, 0.012539184952978056, 0.013322884012539185, 0.014106583072100314, 0.013322884012539185, 0.012539184952978056, 0.013322884012539185, 0.014106583072100314, 0.658307210031348, 0.9278996865203761, 0.9020376175548589, 0.579153605015674, 0.014106583072100314, 0.014106583072100314, 0.011755485893416929, 0.0109717868338558, 0.0109717868338558, 0.011755485893416929, 0.01018808777429467, 0.0109717868338558, 0.01018808777429467, 0.01018808777429467, 0.009404388714733543, 0.009404388714733543, 0.009404388714733543, 0.0109717868338558, 0.0109717868338558, 0.009404388714733543, 0.01018808777429467, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.009404388714733543, 0.11050156739811912, 0.11755485893416928, 0.3957680250783699, 0.3957680250783699, 0.39655172413793105, 0.3996865203761755, 0.6661442006269592, 0.39655172413793105, 0.3957680250783699, 0.3957680250783699, 0.3949843260188088, 0.012539184952978056, 0.04310344827586207, 0.0109717868338558, 0.6105015673981191, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.01018808777429467, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.0109717868338558, 0.011755485893416929, 0.011755485893416929, 0.06191222570532915, 0.12695924764890282, 0.5736677115987461], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/4F5.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "4F5", "n_seqs": 459, "length": 41, "gap_rates": [0.08932461873638345, 0.06971677559912855, 0.04793028322440087, 0.010893246187363835, 0.010893246187363835, 0.010893246187363835, 0.002178649237472767, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.030501089324618737, 0.15468409586056645, 0.2549019607843137, 0.3355119825708061, 0.4008714596949891, 0.869281045751634, 0.8910675381263616, 0.775599128540305, 0.017429193899782137, 0.04357298474945534, 0.04139433551198257, 0.0457516339869281, 0.05228758169934641, 0.02178649237472767, 0.030501089324618737, 0.04793028322440087, 0.05664488017429194, 0.07407407407407407, 0.0915032679738562, 0.09586056644880174, 0.10021786492374728, 0.12200435729847495, 0.5381263616557734, 0.8104575163398693], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/4HBT_2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "4HBT_2", "n_seqs": 2134, "length": 150, "gap_rates": [0.5796626054358013, 0.30880974695407687, 0.22586691658856609, 0.1429240862230553, 0.057638238050609185, 0.03608247422680412, 0.031865042174320526, 0.02483598875351453, 0.020618556701030927, 0.019212746016869727, 0.017338331771321464, 0.014526710402999063, 0.014058106841611996, 0.01358950328022493, 0.013120899718837863, 0.01077788191190253, 0.010309278350515464, 0.008903467666354265, 0.011715089034676664, 0.008903467666354265, 0.007497656982193065, 0.007497656982193065, 0.007497656982193065, 0.007029053420805998, 0.007029053420805998, 0.006560449859418931, 0.006560449859418931, 0.006560449859418931, 0.006091846298031865, 0.1204311152764761, 0.9123711340206185, 0.9372071227741331, 0.9465791940018744, 0.9432989690721649, 0.9203373945641987, 0.8842549203373946, 0.15510777881911902, 0.10637300843486411, 0.08388003748828492, 0.07638238050609185, 0.8884723523898782, 0.42970946579194, 0.13261480787253982, 0.06419868791002811, 0.038425492033739454, 0.03327085285848173, 0.03420805998125586, 0.10543580131208997, 0.044048734770384255, 0.9133083411433927, 0.9451733833177132, 0.9273664479850047, 0.8926897844423618, 0.037019681349578254, 0.023430178069353328, 0.006560449859418931, 0.006091846298031865, 0.005154639175257732, 0.005623242736644799, 0.00937207122774133, 0.0037488284910965324, 0.004686035613870665, 0.0028116213683223993, 0.0023430178069353325, 0.0018744142455482662, 0.0018744142455482662, 0.0023430178069353325, 0.0014058106841611997, 0.0028116213683223993, 0.00046860356138706655, 0.00046860356138706655, 0.0009372071227741331, 0.0014058106841611997, 0.0023430178069353325, 0.0018744142455482662, 0.9231490159325211, 0.0014058106841611997, 0.005154639175257732, 0.004217432052483599, 0.0023430178069353325, 0.0023430178069353325, 0.0032802249297094657, 0.004686035613870665, 0.005623242736644799, 0.005154639175257732, 0.9475164011246485, 0.9404873477038426, 0.008434864104967198, 0.01077788191190253, 0.007966260543580132, 0.007966260543580132, 0.029522024367385193, 0.007966260543580132, 0.008903467666354265, 0.008903467666354265, 0.008903467666354265, 0.008903467666354265, 0.009840674789128397, 0.010309278350515464, 0.01640112464854733, 0.014526710402999063, 0.9395501405810684, 0.4259606373008435, 0.331302717900656, 0.06607310215557638, 0.05248359887535145, 0.05951265229615745, 0.04779756326148079, 0.8992502343017807, 0.7685098406747891, 0.05014058106841612, 0.05060918462980318, 0.053420805998125584, 0.05576382380506092, 0.05529522024367385, 0.05810684161199625, 0.06232427366447985, 0.06607310215557638, 0.06841611996251172, 0.07544517338331772, 0.08528584817244611, 0.09137769447047797, 0.09700093720712277, 0.13074039362699155, 0.14104967197750704, 0.23758200562324275, 0.8772258669165885, 0.9334582942830365, 0.9353327085285849, 0.9376757263355201, 0.9386129334582943, 0.9414245548266167, 0.9390815370196813, 0.9386129334582943, 0.9372071227741331, 0.9343955014058107, 0.9329896907216495, 0.274601686972821, 0.2591377694470478, 0.2624179943767573, 0.27647610121836924, 0.28631677600749766, 0.30506091846298033, 0.3406747891283974, 0.36457357075913777, 0.40487347703842547, 0.4746954076850984, 0.5796626054358013, 0.7104029990627929, 0.895032802249297], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/7TMR-DISMED2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "7TMR-DISMED2", "n_seqs": 546, "length": 151, "gap_rates": [0.6648351648351648, 0.41208791208791207, 0.30036630036630035, 0.23992673992673993, 0.21245421245421245, 0.20146520146520147, 0.19413919413919414, 0.19230769230769232, 0.184981684981685, 0.163003663003663, 0.14835164835164835, 0.13736263736263737, 0.13003663003663005, 0.12637362637362637, 0.11538461538461539, 0.11172161172161173, 0.10622710622710622, 0.1043956043956044, 0.7014652014652014, 0.45604395604395603, 0.3717948717948718, 0.2326007326007326, 0.1227106227106227, 0.09523809523809523, 0.09523809523809523, 0.7380952380952381, 0.07875457875457875, 0.08424908424908426, 0.9468864468864469, 0.2600732600732601, 0.13553113553113552, 0.09523809523809523, 0.08608058608058608, 0.07692307692307693, 0.07142857142857142, 0.07326007326007326, 0.0695970695970696, 0.06227106227106227, 0.06776556776556776, 0.0641025641025641, 0.06593406593406594, 0.047619047619047616, 0.03296703296703297, 0.020146520146520148, 0.014652014652014652, 0.007326007326007326, 0.003663003663003663, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.0018315018315018315, 0.9432234432234432, 0.9285714285714286, 0.163003663003663, 0.05860805860805861, 0.02564102564102564, 0.003663003663003663, 0.009157509157509158, 0.01098901098901099, 0.023809523809523808, 0.06227106227106227, 0.06227106227106227, 0.038461538461538464, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.02197802197802198, 0.01098901098901099, 0.007326007326007326, 0.009157509157509158, 0.018315018315018316, 0.014652014652014652, 0.009157509157509158, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.03296703296703297, 0.029304029304029304, 0.029304029304029304, 0.03296703296703297, 0.7271062271062271, 0.9322344322344323, 0.8864468864468864, 0.19963369963369965, 0.038461538461538464, 0.06043956043956044, 0.054945054945054944, 0.04395604395604396, 0.029304029304029304, 0.020146520146520148, 0.018315018315018316, 0.01282051282051282, 0.9084249084249084, 0.9304029304029304, 0.8864468864468864, 0.007326007326007326, 0.005494505494505495, 0.003663003663003663, 0.005494505494505495, 0.009157509157509158, 0.018315018315018316, 0.2893772893772894, 0.20512820512820512, 0.14835164835164835, 0.08058608058608059, 0.056776556776556776, 0.04395604395604396, 0.040293040293040296, 0.8626373626373627, 0.031135531135531136, 0.031135531135531136, 0.018315018315018316, 0.9432234432234432, 0.9212454212454212, 0.020146520146520148, 0.01282051282051282, 0.01098901098901099, 0.056776556776556776, 0.054945054945054944, 0.018315018315018316, 0.018315018315018316, 0.9358974358974359, 0.01282051282051282, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.023809523809523808, 0.15934065934065933, 0.01282051282051282, 0.01098901098901099, 0.009157509157509158, 0.009157509157509158, 0.009157509157509158, 0.018315018315018316, 0.031135531135531136, 0.03663003663003663, 0.05128205128205128, 0.9395604395604396, 0.15384615384615385, 0.16483516483516483, 0.1227106227106227, 0.14102564102564102, 0.1575091575091575, 0.17765567765567766, 0.1978021978021978, 0.22344322344322345, 0.2673992673992674, 0.44505494505494503, 0.7912087912087912], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/7TMR-HDED.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "7TMR-HDED", "n_seqs": 524, "length": 352, "gap_rates": [0.7175572519083969, 0.37213740458015265, 0.31297709923664124, 0.2595419847328244, 0.24427480916030533, 0.22709923664122136, 0.22709923664122136, 0.18702290076335878, 0.1450381679389313, 0.1297709923664122, 0.07251908396946564, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.05725190839694656, 0.383587786259542, 0.383587786259542, 0.8396946564885496, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05152671755725191, 0.05152671755725191, 0.04770992366412214, 0.04770992366412214, 0.04770992366412214, 0.04770992366412214, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04389312977099236, 0.04580152671755725, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04580152671755725, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04198473282442748, 0.04198473282442748, 0.04007633587786259, 0.04198473282442748, 0.04198473282442748, 0.04580152671755725, 0.04389312977099236, 0.04580152671755725, 0.04389312977099236, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04007633587786259, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.2366412213740458, 0.23091603053435114, 0.21183206106870228, 0.16221374045801526, 0.1297709923664122, 0.4770992366412214, 0.5973282442748091, 0.6393129770992366, 0.6622137404580153, 0.6889312977099237, 0.7118320610687023, 0.7251908396946565, 0.7519083969465649, 0.7729007633587787, 0.7843511450381679, 0.816793893129771, 0.8320610687022901, 0.8396946564885496, 0.8473282442748091, 0.8778625954198473, 0.8854961832061069, 0.8893129770992366, 0.9064885496183206, 0.9103053435114504, 0.916030534351145, 0.9179389312977099, 0.9179389312977099, 0.9179389312977099, 0.9179389312977099, 0.9217557251908397, 0.9217557251908397, 0.9217557251908397, 0.9236641221374046, 0.9236641221374046, 0.9236641221374046, 0.9236641221374046, 0.9312977099236641, 0.9389312977099237, 0.9446564885496184, 0.9465648854961832, 0.9484732824427481, 0.9465648854961832, 0.9427480916030534, 0.933206106870229, 0.9293893129770993, 0.9236641221374046, 0.9236641221374046, 0.9236641221374046, 0.9236641221374046, 0.9217557251908397, 0.9217557251908397, 0.9217557251908397, 0.9179389312977099, 0.9179389312977099, 0.9179389312977099, 0.9179389312977099, 0.9141221374045801, 0.9083969465648855, 0.8912213740458015, 0.8854961832061069, 0.8816793893129771, 0.851145038167939, 0.8416030534351145, 0.8377862595419847, 0.8263358778625954, 0.8072519083969466, 0.7786259541984732, 0.7576335877862596, 0.7423664122137404, 0.7194656488549618, 0.6984732824427481, 0.6755725190839694, 0.6545801526717557, 0.6221374045801527, 0.5744274809160306, 0.3969465648854962, 0.30725190839694655, 0.3148854961832061, 0.23473282442748092, 0.1984732824427481, 0.16984732824427481, 0.1431297709923664, 0.1316793893129771, 0.12022900763358779, 0.1183206106870229, 0.11450381679389313, 0.11641221374045801, 0.12022900763358779, 0.12595419847328243, 0.1316793893129771, 0.1431297709923664, 0.16221374045801526, 0.16984732824427481, 0.1736641221374046, 0.09732824427480916, 0.5038167938931297, 0.5896946564885496, 0.7022900763358778, 0.7461832061068703, 0.8015267175572519, 0.8416030534351145, 0.8702290076335878, 0.9217557251908397, 0.9312977099236641, 0.9408396946564885, 0.9370229007633588, 0.9236641221374046, 0.9103053435114504, 0.8549618320610687, 0.833969465648855, 0.7919847328244275, 0.7213740458015268, 0.6698473282442748, 0.5248091603053435, 0.4389312977099237, 0.07442748091603053, 0.07442748091603053, 0.05534351145038168, 0.05152671755725191, 0.05343511450381679, 0.05152671755725191, 0.05343511450381679, 0.8435114503816794, 0.03435114503816794, 0.03244274809160305, 0.04007633587786259, 0.04198473282442748, 0.17748091603053434, 0.2538167938931298, 0.1984732824427481, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.04007633587786259, 0.04198473282442748, 0.04198473282442748, 0.03435114503816794, 0.030534351145038167, 0.03816793893129771, 0.030534351145038167, 0.02862595419847328, 0.022900763358778626, 0.022900763358778626, 0.026717557251908396, 0.026717557251908396, 0.02862595419847328, 0.03435114503816794, 0.03435114503816794, 0.05534351145038168, 0.07824427480916031, 0.8587786259541985, 0.9083969465648855, 0.8874045801526718, 0.8282442748091603, 0.12022900763358779, 0.11641221374045801, 0.11068702290076336, 0.11259541984732824, 0.04580152671755725, 0.3893129770992366, 0.6183206106870229, 0.6507633587786259, 0.7137404580152672, 0.7251908396946565, 0.7461832061068703, 0.7576335877862596, 0.7690839694656488, 0.7748091603053435, 0.7843511450381679, 0.7862595419847328, 0.8034351145038168, 0.8110687022900763, 0.8206106870229007, 0.833969465648855, 0.851145038167939, 0.8797709923664122, 0.9389312977099237, 0.9045801526717557, 0.8664122137404581, 0.8396946564885496, 0.8282442748091603, 0.8110687022900763, 0.8072519083969466, 0.7977099236641222, 0.7862595419847328, 0.7786259541984732, 0.7690839694656488, 0.7614503816793893, 0.7557251908396947, 0.7423664122137404, 0.7175572519083969, 0.6984732824427481, 0.6412213740458015, 0.41603053435114506, 0.33396946564885494, 0.04961832061068702, 0.061068702290076333, 0.05152671755725191, 0.05343511450381679, 0.05343511450381679, 0.04389312977099236, 0.05152671755725191, 0.05725190839694656, 0.8874045801526718, 0.1431297709923664, 0.09541984732824428, 0.2366412213740458, 0.2767175572519084, 0.2824427480916031, 0.9255725190839694, 0.8187022900763359, 0.5248091603053435, 0.28053435114503816, 0.7748091603053435, 0.38740458015267176, 0.11068702290076336, 0.07442748091603053, 0.9427480916030534, 0.9122137404580153, 0.04580152671755725, 0.04007633587786259, 0.03816793893129771, 0.03435114503816794, 0.03625954198473282, 0.03816793893129771, 0.03816793893129771, 0.04007633587786259, 0.07061068702290077, 0.04580152671755725, 0.02480916030534351, 0.026717557251908396, 0.02099236641221374, 0.02099236641221374, 0.019083969465648856, 0.9408396946564885, 0.019083969465648856, 0.019083969465648856, 0.01717557251908397, 0.01717557251908397, 0.02099236641221374, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.02099236641221374, 0.01717557251908397, 0.02862595419847328, 0.022900763358778626, 0.3377862595419847, 0.3377862595419847, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.02480916030534351, 0.026717557251908396, 0.02862595419847328, 0.03244274809160305, 0.05152671755725191, 0.08015267175572519, 0.26908396946564883, 0.4351145038167939, 0.5, 0.8797709923664122], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/7TM_GPCR_Srab.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "7TM_GPCR_Srab", "n_seqs": 218, "length": 341, "gap_rates": [0.8211009174311926, 0.7660550458715596, 0.7064220183486238, 0.7064220183486238, 0.7018348623853211, 0.6926605504587156, 0.6926605504587156, 0.6880733944954128, 0.6743119266055045, 0.6697247706422018, 0.6651376146788991, 0.6651376146788991, 0.6605504587155964, 0.6559633027522935, 0.6422018348623854, 0.6330275229357798, 0.6284403669724771, 0.6009174311926605, 0.5871559633027523, 0.5596330275229358, 0.5458715596330275, 0.5412844036697247, 0.5275229357798165, 0.5229357798165137, 0.5229357798165137, 0.5229357798165137, 0.5229357798165137, 0.5229357798165137, 0.5229357798165137, 0.5229357798165137, 0.5275229357798165, 0.5275229357798165, 0.5275229357798165, 0.5229357798165137, 0.5229357798165137, 0.518348623853211, 0.9036697247706422, 0.9220183486238532, 0.8990825688073395, 0.5137614678899083, 0.5137614678899083, 0.5091743119266054, 0.5137614678899083, 0.5045871559633027, 0.5, 0.4954128440366973, 0.4954128440366973, 0.4954128440366973, 0.481651376146789, 0.48623853211009177, 0.48623853211009177, 0.48623853211009177, 0.48623853211009177, 0.47706422018348627, 0.46788990825688076, 0.46788990825688076, 0.46788990825688076, 0.46788990825688076, 0.463302752293578, 0.463302752293578, 0.463302752293578, 0.463302752293578, 0.45871559633027525, 0.45871559633027525, 0.4541284403669725, 0.4541284403669725, 0.4541284403669725, 0.45871559633027525, 0.463302752293578, 0.4724770642201835, 0.48623853211009177, 0.48623853211009177, 0.481651376146789, 0.5, 0.4954128440366973, 0.5, 0.5091743119266054, 0.5137614678899083, 0.47706422018348627, 0.47706422018348627, 0.481651376146789, 0.48623853211009177, 0.481651376146789, 0.481651376146789, 0.5963302752293578, 0.9357798165137615, 0.7935779816513762, 0.45871559633027525, 0.44954128440366975, 0.44036697247706424, 0.44036697247706424, 0.43577981651376146, 0.43119266055045874, 0.44036697247706424, 0.43119266055045874, 0.42201834862385323, 0.40825688073394495, 0.39908256880733944, 0.38990825688073394, 0.3853211009174312, 0.40825688073394495, 0.38073394495412843, 0.3577981651376147, 0.3486238532110092, 0.3486238532110092, 0.3394495412844037, 0.3394495412844037, 0.3302752293577982, 0.3256880733944954, 0.3256880733944954, 0.3165137614678899, 0.30275229357798167, 0.2981651376146789, 0.30275229357798167, 0.2981651376146789, 0.26605504587155965, 0.26146788990825687, 0.23853211009174313, 0.22935779816513763, 0.22477064220183487, 0.2018348623853211, 0.19724770642201836, 0.1926605504587156, 0.1926605504587156, 0.1926605504587156, 0.2018348623853211, 0.19724770642201836, 0.19724770642201836, 0.19724770642201836, 0.19724770642201836, 0.19724770642201836, 0.19724770642201836, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.20642201834862386, 0.21100917431192662, 0.21559633027522937, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.23853211009174313, 0.21559633027522937, 0.21100917431192662, 0.21100917431192662, 0.21100917431192662, 0.20642201834862386, 0.21559633027522937, 0.25229357798165136, 0.23853211009174313, 0.2706422018348624, 0.27522935779816515, 0.2798165137614679, 0.2798165137614679, 0.27522935779816515, 0.27522935779816515, 0.2798165137614679, 0.29357798165137616, 0.3073394495412844, 0.3119266055045872, 0.3073394495412844, 0.3165137614678899, 0.3119266055045872, 0.3119266055045872, 0.3073394495412844, 0.3119266055045872, 0.9357798165137615, 0.9036697247706422, 0.6651376146788991, 0.3577981651376147, 0.3256880733944954, 0.3073394495412844, 0.30275229357798167, 0.2981651376146789, 0.3119266055045872, 0.30275229357798167, 0.2981651376146789, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.3119266055045872, 0.3119266055045872, 0.9036697247706422, 0.8990825688073395, 0.39908256880733944, 0.3119266055045872, 0.3073394495412844, 0.30275229357798167, 0.30275229357798167, 0.30275229357798167, 0.3073394495412844, 0.2981651376146789, 0.29357798165137616, 0.2889908256880734, 0.29357798165137616, 0.28440366972477066, 0.28440366972477066, 0.28440366972477066, 0.27522935779816515, 0.27522935779816515, 0.27522935779816515, 0.2798165137614679, 0.2798165137614679, 0.2798165137614679, 0.28440366972477066, 0.2798165137614679, 0.27522935779816515, 0.27522935779816515, 0.2706422018348624, 0.26605504587155965, 0.2706422018348624, 0.26605504587155965, 0.2706422018348624, 0.26605504587155965, 0.2706422018348624, 0.27522935779816515, 0.3302752293577982, 0.3302752293577982, 0.3486238532110092, 0.8165137614678899, 0.9128440366972477, 0.8853211009174312, 0.7660550458715596, 0.43577981651376146, 0.3348623853211009, 0.3302752293577982, 0.3165137614678899, 0.3165137614678899, 0.3119266055045872, 0.3119266055045872, 0.3165137614678899, 0.3119266055045872, 0.3119266055045872, 0.3119266055045872, 0.3119266055045872, 0.3165137614678899, 0.3165137614678899, 0.3211009174311927, 0.3211009174311927, 0.3165137614678899, 0.3165137614678899, 0.3165137614678899, 0.3165137614678899, 0.3165137614678899, 0.3165137614678899, 0.3165137614678899, 0.3211009174311927, 0.3211009174311927, 0.3256880733944954, 0.3256880733944954, 0.3348623853211009, 0.3394495412844037, 0.3394495412844037, 0.3302752293577982, 0.3302752293577982, 0.3302752293577982, 0.3302752293577982, 0.3302752293577982, 0.3348623853211009, 0.3394495412844037, 0.3394495412844037, 0.3394495412844037, 0.3302752293577982, 0.3302752293577982, 0.3302752293577982, 0.3348623853211009, 0.3486238532110092, 0.3577981651376147, 0.4036697247706422, 0.40825688073394495, 0.38990825688073394, 0.39908256880733944, 0.40825688073394495, 0.42660550458715596, 0.42201834862385323, 0.43119266055045874, 0.42660550458715596, 0.43119266055045874, 0.43577981651376146, 0.43577981651376146, 0.463302752293578, 0.45871559633027525, 0.4724770642201835, 0.47706422018348627, 0.48623853211009177, 0.4908256880733945, 0.48623853211009177, 0.481651376146789, 0.47706422018348627, 0.4908256880733945, 0.4954128440366973, 0.4908256880733945, 0.4908256880733945, 0.4908256880733945, 0.4908256880733945, 0.4908256880733945, 0.4908256880733945, 0.4954128440366973, 0.4954128440366973, 0.4954128440366973, 0.5, 0.5091743119266054, 0.5091743119266054, 0.5091743119266054, 0.5137614678899083, 0.5137614678899083, 0.5137614678899083, 0.5137614678899083, 0.5229357798165137, 0.5458715596330275, 0.5688073394495413, 0.6055045871559633, 0.6146788990825688, 0.6192660550458715, 0.6192660550458715, 0.6284403669724771, 0.6330275229357798, 0.6376146788990825, 0.6284403669724771, 0.6284403669724771, 0.6284403669724771, 0.6330275229357798, 0.6422018348623854, 0.6467889908256881, 0.6422018348623854, 0.8256880733944955, 0.8761467889908257, 0.9495412844036697, 0.8394495412844036, 0.8165137614678899, 0.6467889908256881, 0.6467889908256881, 0.6559633027522935, 0.6559633027522935, 0.6559633027522935, 0.6605504587155964, 0.6834862385321101, 0.7018348623853211, 0.7064220183486238, 0.8486238532110092], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/7tm_7.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "7tm_7", "n_seqs": 929, "length": 453, "gap_rates": [0.8514531754574811, 0.6716899892357373, 0.581270182992465, 0.5199138858988159, 0.4983853606027987, 0.48116254036598494, 0.4607104413347686, 0.44994617868675996, 0.4456404736275565, 0.43918191603875134, 0.43487621097954793, 0.4327233584499462, 0.4434876210979548, 0.42734122712594186, 0.42734122712594186, 0.42303552206673845, 0.8159311087190527, 0.8740581270182992, 0.9235737351991389, 0.8977395048439182, 0.8503767491926802, 0.7578040904198062, 0.49623250807319697, 0.48116254036598494, 0.4510226049515608, 0.41980624327233584, 0.4058127018299246, 0.3982777179763186, 0.39181916038751347, 0.3821313240043057, 0.379978471474704, 0.379978471474704, 0.38105489773950485, 0.7728740581270183, 0.41119483315392896, 0.3789020452099031, 0.3606027987082885, 0.3444564047362756, 0.3379978471474704, 0.3293864370290635, 0.3261571582346609, 0.31969860064585576, 0.3110871905274489, 0.3067814854682454, 0.29709364908503766, 0.294940796555436, 0.29278794402583425, 0.28955866523143164, 0.28632938643702904, 0.28417653390742736, 0.28094725511302476, 0.27879440258342303, 0.2798708288482239, 0.2766415500538213, 0.2755651237890204, 0.27879440258342303, 0.2938643702906351, 0.9364908503767492, 0.5748116254036598, 0.5166846071044133, 0.4757804090419806, 0.4381054897739505, 0.38428417653390745, 0.3638320775026911, 0.38105489773950485, 0.35414424111948334, 0.3573735199138859, 0.35091496232508074, 0.310010764262648, 0.30032292787944026, 0.26157158234660927, 0.25511302475780406, 0.2518837459634015, 0.24865446716899892, 0.2465016146393972, 0.2432723358449946, 0.24219590958019377, 0.23896663078579117, 0.232508073196986, 0.232508073196986, 0.23466092572658773, 0.2303552206673843, 0.2303552206673843, 0.22927879440258342, 0.22927879440258342, 0.2271259418729817, 0.2271259418729817, 0.21959095801937567, 0.22066738428417654, 0.2217438105489774, 0.2238966630785791, 0.22066738428417654, 0.2185145317545748, 0.2185145317545748, 0.21528525296017223, 0.24542518837459634, 0.22282023681377824, 0.22066738428417654, 0.21528525296017223, 0.21420882669537136, 0.21205597416576966, 0.2109795479009688, 0.20882669537136705, 0.20667384284176535, 0.20667384284176535, 0.20344456404736275, 0.20021528525296017, 0.20021528525296017, 0.2077502691065662, 0.20344456404736275, 0.23466092572658773, 0.2217438105489774, 0.21420882669537136, 0.2303552206673843, 0.21743810548977396, 0.21420882669537136, 0.2077502691065662, 0.2023681377825619, 0.1991388589881593, 0.21420882669537136, 0.20882669537136705, 0.2109795479009688, 0.22820236813778255, 0.26480086114101187, 0.35091496232508074, 0.4015069967707212, 0.7007534983853606, 0.8622174381054898, 0.946178686759957, 0.9235737351991389, 0.7965554359526372, 0.5866523143164694, 0.23358449946178686, 0.2163616792249731, 0.2023681377825619, 0.193756727664155, 0.18945102260495156, 0.18299246501614638, 0.17653390742734124, 0.17761033369214208, 0.17545748116254037, 0.17330462863293863, 0.1743810548977395, 0.17115177610333693, 0.17007534983853606, 0.16792249730893433, 0.16792249730893433, 0.1689989235737352, 0.17007534983853606, 0.1722282023681378, 0.17330462863293863, 0.17545748116254037, 0.18299246501614638, 0.18622174381054898, 0.17868675995694294, 0.7136706135629709, 0.8148546824542519, 0.8955866523143164, 0.9332615715823466, 0.9451022604951561, 0.9483315392895587, 0.9397201291711518, 0.9171151776103337, 0.8493003229278795, 0.7707212055974165, 0.6221743810548978, 0.49623250807319697, 0.4327233584499462, 0.294940796555436, 0.24219590958019377, 0.2077502691065662, 0.19268030139935413, 0.1743810548977395, 0.1668460710441335, 0.16792249730893433, 0.1668460710441335, 0.16469321851453175, 0.16254036598493002, 0.1969860064585576, 0.18083961248654468, 0.1603875134553283, 0.15931108719052745, 0.1603875134553283, 0.1603875134553283, 0.16361679224973089, 0.17115177610333693, 0.1743810548977395, 0.17761033369214208, 0.18083961248654468, 0.8665231431646933, 0.93756727664155, 0.9095801937567277, 0.8051668460710442, 0.4208826695371367, 0.2604951560818084, 0.2357373519913886, 0.1916038751345533, 0.1668460710441335, 0.15931108719052745, 0.1496232508073197, 0.1496232508073197, 0.14854682454251883, 0.14854682454251883, 0.14854682454251883, 0.15177610333692143, 0.147470398277718, 0.14854682454251883, 0.14639397201291712, 0.1496232508073197, 0.1722282023681378, 0.8482238966630786, 0.16146393972012918, 0.1496232508073197, 0.14208826695371368, 0.14101184068891282, 0.13670613562970937, 0.1356297093649085, 0.1356297093649085, 0.14531754574811626, 0.15285252960172227, 0.147470398277718, 0.18191603875134554, 0.18299246501614638, 0.24004305705059203, 0.2744886975242196, 0.27018299246501615, 0.29709364908503766, 0.4101184068891281, 0.426264800861141, 0.5209903121636168, 0.5629709364908504, 0.5844994617868676, 0.6393972012917115, 0.6490850376749193, 0.6523143164693218, 0.6404736275565124, 0.7233584499461787, 0.7707212055974165, 0.806243272335845, 0.8460710441334769, 0.8772874058127018, 0.8998923573735199, 0.922497308934338, 0.9418729817007535, 0.946178686759957, 0.9354144241119483, 0.9085037674919269, 0.8934337997847147, 0.8654467168998924, 0.8256189451022605, 0.7890204520990313, 0.7459634015069968, 0.6942949407965554, 0.6447793326157158, 0.3832077502691066, 0.34230355220667386, 0.3153928955866523, 0.2938643702906351, 0.27879440258342303, 0.2766415500538213, 0.2798708288482239, 0.15177610333692143, 0.6372443487621098, 0.7610333692142088, 0.8245425188374597, 0.8654467168998924, 0.8955866523143164, 0.9085037674919269, 0.9203444564047363, 0.93756727664155, 0.9451022604951561, 0.9278794402583423, 0.9149623250807319, 0.9041980624327234, 0.8772874058127018, 0.8417653390742734, 0.7976318622174381, 0.7179763186221744, 0.5758880516684607, 0.1916038751345533, 0.12594187298170076, 0.11194833153928956, 0.10871905274488698, 0.10764262648008611, 0.1054897739504844, 0.1054897739504844, 0.10441334768568353, 0.10333692142088267, 0.10010764262648009, 0.10010764262648009, 0.10441334768568353, 0.10226049515608181, 0.09903121636167922, 0.0968783638320775, 0.09580193756727665, 0.09472551130247578, 0.09364908503767493, 0.09364908503767493, 0.09364908503767493, 0.09580193756727665, 0.09257265877287406, 0.09364908503767493, 0.09364908503767493, 0.09257265877287406, 0.09364908503767493, 0.09580193756727665, 0.09472551130247578, 0.09580193756727665, 0.09472551130247578, 0.09580193756727665, 0.09472551130247578, 0.09580193756727665, 0.10333692142088267, 0.09903121636167922, 0.0968783638320775, 0.09472551130247578, 0.09472551130247578, 0.09795479009687837, 0.10979547900968784, 0.10871905274488698, 0.10118406889128095, 0.8514531754574811, 0.9235737351991389, 0.7405812701829925, 0.12271259418729817, 0.1216361679224973, 0.116254036598493, 0.11302475780409042, 0.10871905274488698, 0.11517761033369214, 0.1216361679224973, 0.38428417653390745, 0.5941872981700753, 0.7707212055974165, 0.883745963401507, 0.9343379978471474, 0.8342303552206674, 0.6781485468245425, 0.5102260495156081, 0.2960172228202368, 0.22066738428417654, 0.1668460710441335, 0.14208826695371368, 0.116254036598493, 0.10656620021528525, 0.10333692142088267, 0.11302475780409042, 0.10441334768568353, 0.10764262648008611, 0.10871905274488698, 0.10118406889128095, 0.9494079655543596, 0.10118406889128095, 0.09580193756727665, 0.09364908503767493, 0.09257265877287406, 0.09041980624327234, 0.08719052744886975, 0.08934337997847147, 0.09149623250807319, 0.09795479009687837, 0.10010764262648009, 0.7976318622174381, 0.15285252960172227, 0.11517761033369214, 0.11410118406889128, 0.1054897739504844, 0.1054897739504844, 0.10333692142088267, 0.1054897739504844, 0.11840688912809473, 0.10764262648008611, 0.10871905274488698, 0.10979547900968784, 0.11410118406889128, 0.1216361679224973, 0.12701829924650163, 0.12809472551130247, 0.1302475780409042, 0.13240043057050593, 0.13455328310010764, 0.13455328310010764, 0.13347685683530677, 0.93756727664155, 0.2077502691065662, 0.20990312163616792, 0.19806243272335844, 0.852529601722282, 0.9203444564047363, 0.7179763186221744, 0.3326157158234661, 0.2906350914962325, 0.2077502691065662, 0.17868675995694294, 0.15392895586652314, 0.15177610333692143, 0.19052744886975242, 0.1603875134553283, 0.15931108719052745, 0.15392895586652314, 0.15715823466092574, 0.17007534983853606, 0.9235737351991389, 0.8815931108719053, 0.14854682454251883, 0.1496232508073197, 0.1496232508073197, 0.14639397201291712, 0.14854682454251883, 0.14639397201291712, 0.14639397201291712, 0.14639397201291712, 0.14531754574811626, 0.9397201291711518, 0.147470398277718, 0.147470398277718, 0.14639397201291712, 0.14101184068891282, 0.17761033369214208, 0.15177610333692143, 0.1442411194833154, 0.15392895586652314, 0.14639397201291712, 0.1442411194833154, 0.15392895586652314, 0.16469321851453175, 0.1496232508073197, 0.147470398277718, 0.147470398277718, 0.14854682454251883, 0.14854682454251883, 0.1496232508073197, 0.147470398277718, 0.15715823466092574, 0.16576964477933262, 0.17545748116254037, 0.1916038751345533, 0.20129171151776104, 0.20882669537136705, 0.2077502691065662, 0.20990312163616792, 0.20990312163616792, 0.2131324004305705, 0.21528525296017223, 0.22497308934337998, 0.23358449946178686, 0.23681377825618946, 0.2518837459634015, 0.26157158234660927, 0.35091496232508074, 0.4757804090419806, 0.6318622174381054, 0.7696447793326158], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/A1_Propeptide.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "A1_Propeptide", "n_seqs": 144, "length": 30, "gap_rates": [0.4444444444444444, 0.2708333333333333, 0.08333333333333333, 0.034722222222222224, 0.027777777777777776, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7430555555555556, 0.041666666666666664, 0.05555555555555555, 0.13194444444444445, 0.1597222222222222, 0.1597222222222222, 0.1736111111111111, 0.2152777777777778, 0.2916666666666667, 0.3611111111111111, 0.4027777777777778, 0.4791666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/A2M_N.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "A2M_N", "n_seqs": 1027, "length": 110, "gap_rates": [0.8052580331061344, 0.1733203505355404, 0.08471275559883155, 0.04089581304771178, 0.024342745861733205, 0.014605647517039922, 0.012658227848101266, 0.008763388510223954, 0.007789678675754625, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0029211295034079843, 0.0019474196689386564, 0.0009737098344693282, 0.0, 0.0, 0.0, 0.0, 0.0009737098344693282, 0.0029211295034079843, 0.0038948393378773127, 0.7692307692307693, 0.9221032132424537, 0.7896786757546251, 0.7312560856864654, 0.0, 0.009737098344693282, 0.010710808179162609, 0.010710808179162609, 0.012658227848101266, 0.01557935735150925, 0.01557935735150925, 0.0029211295034079843, 0.8636806231742941, 0.9240506329113924, 0.9367088607594937, 0.8841285296981499, 0.7653359298928919, 0.19279454722492698, 0.011684518013631937, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.009737098344693282, 0.011684518013631937, 0.0009737098344693282, 0.0009737098344693282, 0.0009737098344693282, 0.0019474196689386564, 0.0019474196689386564, 0.0038948393378773127, 0.0019474196689386564, 0.0019474196689386564, 0.0009737098344693282, 0.0009737098344693282, 0.0029211295034079843, 0.0029211295034079843, 0.06329113924050633, 0.8997078870496592, 0.007789678675754625, 0.005842259006815969, 0.004868549172346641, 0.010710808179162609, 0.005842259006815969, 0.019474196689386564, 0.007789678675754625, 0.005842259006815969, 0.004868549172346641, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.0038948393378773127, 0.005842259006815969, 0.005842259006815969, 0.007789678675754625, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.010710808179162609, 0.011684518013631937, 0.011684518013631937, 0.012658227848101266, 0.01557935735150925, 0.018500486854917234, 0.9016553067185978, 0.937682570593963, 0.9123661148977604, 0.8792599805258033, 0.5277507302823758, 0.5306718597857838, 0.3777994157740993, 0.18111002921129504, 0.1966893865628043, 0.2112950340798442, 0.2453748782862707, 0.2726387536514119, 0.2911392405063291, 0.31061343719571566, 0.32619279454722494, 0.34371957156767285, 0.37000973709834467, 0.38656280428432327, 0.42745861733203505, 0.4800389483933788], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_18.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_18", "n_seqs": 1238, "length": 187, "gap_rates": [0.19143780290791598, 0.06865912762520193, 0.04361873990306947, 0.03877221324717286, 0.035541195476575124, 0.03150242326332795, 0.027463651050080775, 0.0210016155088853, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.020193861066235864, 0.01938610662358643, 0.017770597738287562, 0.017770597738287562, 0.021809369951534735, 0.025040387722132473, 0.14378029079159935, 0.7891760904684976, 0.27140549273021003, 0.22859450726978997, 0.6445880452342488, 0.7148626817447497, 0.8683360258481422, 0.8925686591276252, 0.925686591276252, 0.944264943457189, 0.9491114701130856, 0.9361873990306947, 0.9168012924071083, 0.8796445880452343, 0.747172859450727, 0.6704361873990307, 0.32148626817447495, 0.11631663974151858, 0.1147011308562197, 0.0864297253634895, 0.036348949919224556, 0.03231017770597738, 0.02988691437802908, 0.027463651050080775, 0.024232633279483037, 0.022617124394184167, 0.021809369951534735, 0.0420032310177706, 0.02988691437802908, 0.025848142164781908, 0.024232633279483037, 0.024232633279483037, 0.027463651050080775, 0.029079159935379646, 0.030694668820678513, 0.033925686591276254, 0.02665589660743134, 0.7924071082390953, 0.8707592891760905, 0.925686591276252, 0.9483037156704361, 0.9361873990306947, 0.8949919224555735, 0.8247172859450727, 0.691437802907916, 0.5864297253634895, 0.5161550888529887, 0.1381260096930533, 0.10339256865912763, 0.06785137318255251, 0.05492730210016155, 0.046849757673667204, 0.0420032310177706, 0.04281098546042003, 0.03796445880452343, 0.03796445880452343, 0.034733441033925685, 0.3053311793214863, 0.2827140549273021, 0.2665589660743134, 0.03877221324717286, 0.03796445880452343, 0.036348949919224556, 0.035541195476575124, 0.03715670436187399, 0.04281098546042003, 0.049273021001615507, 0.11873990306946688, 0.2988691437802908, 0.3974151857835218, 0.7011308562197092, 0.7277867528271406, 0.7423263327948304, 0.7819063004846527, 0.8126009693053312, 0.8610662358642972, 0.901453957996769, 0.9119547657512116, 0.9297253634894992, 0.9394184168012925, 0.9491114701130856, 0.9434571890145396, 0.9345718901453958, 0.9159935379644588, 0.9087237479806138, 0.8877221324717286, 0.8521809369951535, 0.8037156704361874, 0.7762520193861067, 0.7334410339256866, 0.7172859450726979, 0.6768982229402262, 0.6066235864297254, 0.4903069466882068, 0.3974151857835218, 0.3287560581583199, 0.19547657512116318, 0.07189014539579967, 0.05411954765751212, 0.14054927302100162, 0.9466882067851373, 0.02827140549273021, 0.025040387722132473, 0.0210016155088853, 0.021809369951534735, 0.022617124394184167, 0.023424878836833602, 0.025040387722132473, 0.025848142164781908, 0.023424878836833602, 0.02665589660743134, 0.02988691437802908, 0.029079159935379646, 0.0395799676898223, 0.03877221324717286, 0.04361873990306947, 0.08966074313408724, 0.12277867528271405, 0.11873990306946688, 0.5290791599353797, 0.7075928917609047, 0.808562197092084, 0.8820678513731826, 0.9248788368336026, 0.9474959612277868, 0.9402261712439418, 0.9103392568659128, 0.8424878836833603, 0.7560581583198708, 0.5912762520193862, 0.048465266558966075, 0.049273021001615507, 0.049273021001615507, 0.051696284329563816, 0.051696284329563816, 0.05250403877221325, 0.05331179321486268, 0.05411954765751212, 0.05411954765751212, 0.05654281098546042, 0.05815831987075929, 0.05815831987075929, 0.061389337641357025, 0.0630048465266559, 0.06946688206785137, 0.07027463651050081, 0.07996768982229402, 0.10096930533117932, 0.1801292407108239, 0.21567043618739903, 0.2520193861066236, 0.29806138933764137, 0.33521809369951533, 0.40064620355411956, 0.44345718901453957, 0.9483037156704361, 0.9337641357027464, 0.4911147011308562, 0.5323101777059773, 0.561389337641357, 0.5807754442649434, 0.6009693053311793, 0.6114701130856219, 0.6308562197092084, 0.6526655896607432, 0.8303715670436187], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_21.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_21", "n_seqs": 2657, "length": 385, "gap_rates": [0.7414377117049303, 0.641701166729394, 0.5502446368084306, 0.5344373353406097, 0.5325555137372977, 0.5302973278133233, 0.5295445991719985, 0.5284155062100113, 0.5284155062100113, 0.5284155062100113, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5280391418893489, 0.5276627775686865, 0.5276627775686865, 0.5276627775686865, 0.5494919081671058, 0.5491155438464433, 0.554384644335717, 0.6157320286036884, 0.6665412118931126, 0.7342867896123447, 0.8517124576590139, 0.8878434324426044, 0.9153180278509597, 0.9363944298080542, 0.9439217162213023, 0.9251035001881822, 0.8998870907038012, 0.8754234098607452, 0.8155814828754234, 0.7004140007527286, 0.7158449378998871, 0.7060594655626646, 0.6902521640948438, 0.6699284907790741, 0.6541211893112533, 0.6462175385773429, 0.6383138878434325, 0.6300338727888596, 0.6176138502070003, 0.6123447497177268, 0.6612721114038389, 0.6529920963492661, 0.6465939028980052, 0.63793752352277, 0.5641701166729394, 0.5577719232216786, 0.550621001129093, 0.5461046292811441, 0.5404591644712081, 0.5378246142265714, 0.5344373353406097, 0.5344373353406097, 0.53293187805796, 0.53293187805796, 0.5318027850959729, 0.5333082423786225, 0.5344373353406097, 0.53293187805796, 0.5333082423786225, 0.5325555137372977, 0.5318027850959729, 0.5318027850959729, 0.5318027850959729, 0.5318027850959729, 0.5325555137372977, 0.53293187805796, 0.5325555137372977, 0.8351524275498683, 0.561911930748965, 0.5540082800150545, 0.5442228076778322, 0.5385773428678962, 0.5355664283025969, 0.5355664283025969, 0.5351900639819345, 0.5340609710199473, 0.5348136996612721, 0.5340609710199473, 0.5348136996612721, 0.5348136996612721, 0.5355664283025969, 0.5355664283025969, 0.5363191569439217, 0.5366955212645841, 0.5366955212645841, 0.5382009785472337, 0.539330071509221, 0.8916070756492285, 0.933383515242755, 0.9495671810312383, 0.9104252916823485, 0.7824614226571321, 0.7666541211893112, 0.7606322920587129, 0.7463304478735416, 0.7252540459164472, 0.7143394806172375, 0.7086940158073015, 0.693263078660143, 0.6864885208882198, 0.678208505833647, 0.6518630033872789, 0.6447120812946933, 0.6375611592021077, 0.6300338727888596, 0.6194956718103124, 0.615355664283026, 0.6112156567557395, 0.6082047421904403, 0.6018065487391795, 0.5984192698532179, 0.6006774557771923, 0.5987956341738803, 0.596537448249906, 0.5954083552879187, 0.5969138125705683, 0.5976665412118931, 0.5984192698532179, 0.5972901768912308, 0.5935265336846067, 0.5912683477606323, 0.5886337975159955, 0.584493789988709, 0.5814828754234098, 0.580730146782085, 0.5777192322167859, 0.5769665035754611, 0.5758374106134738, 0.5769665035754611, 0.5765901392547986, 0.5758374106134738, 0.575084681972149, 0.5728264960481746, 0.5698155814828755, 0.569439217162213, 0.5679337598795634, 0.5686864885208882, 0.565675573955589, 0.5645464809936018, 0.5630410237109522, 0.5607828377869778, 0.558148287542341, 0.556266465939029, 0.5558901016183666, 0.5555137372977041, 0.5558901016183666, 0.5532555513737297, 0.5502446368084306, 0.5494919081671058, 0.550621001129093, 0.5483628152051185, 0.5491155438464433, 0.5476100865637937, 0.5468573579224689, 0.5461046292811441, 0.5457282649604818, 0.5453519006398193, 0.5419646217538577, 0.5430937147158449, 0.5400828001505458, 0.5397064358298833, 0.548739179525781, 0.5683101242002259, 0.5679337598795634, 0.5671810312382386, 0.5762137749341363, 0.5720737674068498, 0.6040647346631539, 0.6127211140383891, 0.636055701919458, 0.6541211893112533, 0.6962739932254423, 0.7011667293940534, 0.7922468949943545, 0.8607452013549115, 0.9085434700790365, 0.940910801656003, 0.9258562288295069, 0.8833270605946556, 0.8306360557019195, 0.74294316898758, 0.5118554761008657, 0.5133609333835153, 0.5099736544975536, 0.5050809183289424, 0.5016936394429808, 0.499059089198344, 0.4994354535190064, 0.4998118178396688, 0.5024463680843057, 0.49303726006774556, 0.4881445238991344, 0.48438088069251034, 0.49115543846443355, 0.48400451637184794, 0.4761008656379375, 0.4723372224313135, 0.47120812946932633, 0.4681972149040271, 0.4663153933007151, 0.4621753857734287, 0.4591644712081295, 0.45765901392547986, 0.47120812946932633, 0.4659390289800527, 0.45765901392547986, 0.45615355664283025, 0.4531426420775311, 0.45088445615355666, 0.4467444486262702, 0.4459917199849454, 0.4463680843056078, 0.45126082047421906, 0.4697026721866767, 0.4651863003387279, 0.4655626646593903, 0.47196085811065114, 0.4708317651486639, 0.4708317651486639, 0.5163718479488144, 0.5577719232216786, 0.558148287542341, 0.5570191945803538, 0.556266465939029, 0.5540082800150545, 0.563793752352277, 0.5709446744448626, 0.5773428678961234, 0.584493789988709, 0.5837410613473842, 0.5931501693639443, 0.6048174633044787, 0.6337975159954836, 0.6447120812946933, 0.6462175385773429, 0.5261573202860369, 0.5649228453142642, 0.5856228829506963, 0.6089574708317651, 0.6386902521640948, 0.6627775686864885, 0.6879939781708694, 0.7101994730899511, 0.7320286036883703, 0.7564922845314265, 0.7884832517877305, 0.8099360180654874, 0.8291305984192698, 0.8468197214904027, 0.8645088445615355, 0.8814452389913436, 0.9096725630410237, 0.9232216785848701, 0.9303726006774558, 0.9363944298080542, 0.9439217162213023, 0.9491908167105758, 0.946556266465939, 0.939028980052691, 0.9330071509220926, 0.9258562288295069, 0.9164471208129469, 0.8870907038012796, 0.8720361309747836, 0.8558524651863003, 0.8374106134738427, 0.8174633044787354, 0.7997741814076026, 0.7753105005645465, 0.7433195333082424, 0.7211140383891607, 0.6992849077907415, 0.6767030485509974, 0.6499811817839669, 0.6213774934136244, 0.5991719984945427, 0.5747083176514867, 0.5502446368084306, 0.4102371095220173, 0.40647346631539333, 0.3951825366955213, 0.3805043281896876, 0.37147158449379, 0.35867519759126837, 0.3470079036507339, 0.3368460669928491, 0.3248024087316522, 0.312382386149793, 0.29883327060594655, 0.2830259691381257, 0.2657132103876553, 0.2510350018818216, 0.23146405720737673, 0.2179149416635303, 0.20474219044034625, 0.1893112532931878, 0.9138125705683101, 0.16748212269476853, 0.16672939405344372, 0.16409484380880693, 0.16258938652615731, 0.16070756492284533, 0.15957847196085811, 0.1569439217162213, 0.2544222807677832, 0.15205118554761007, 0.13662024840045164, 0.13097478359051562, 0.12269476853594279, 0.12118931125329319, 0.11667293940534437, 0.11328566051938277, 0.11253293187805796, 0.10613473842679715, 0.0929619872036131, 0.15205118554761007, 0.21151674821226948, 0.46405720737674067, 0.8121942039894618, 0.872412495295446, 0.8874670681219421, 0.9032743695897629, 0.9141889348889726, 0.9190816710575838, 0.9108016560030109, 0.8961234474971773, 0.8833270605946556, 0.8596161083929243, 0.7779450508091833, 0.05118554761008656, 0.04779826872412495, 0.03838916070756492, 0.03763643206624012, 0.03650733910425292, 0.036130974783590515, 0.03650733910425292, 0.03650733910425292, 0.036883703424915315, 0.03650733910425292, 0.03650733910425292, 0.03650733910425292, 0.036130974783590515, 0.03650733910425292, 0.042152803914188935, 0.042152803914188935, 0.042152803914188935, 0.03801279638690252, 0.03801279638690252, 0.03801279638690252, 0.03838916070756492, 0.9074143771170493, 0.044787354158825746, 0.04516371847948814, 0.04441098983816334, 0.9055325555137373, 0.7459540835528792, 0.048174633044787356, 0.06624012043658262, 0.06812194203989462, 0.08242378622506587, 0.08769288671433947, 0.8821979676326684, 0.9499435453519006, 0.7745577719232217, 0.434324426044411, 0.17011667293940536, 0.0632292058712834, 0.04591644712081295, 0.04252916823485134, 0.04252916823485134, 0.04328189687617614, 0.04403462551750094, 0.04591644712081295, 0.04779826872412495, 0.06925103500188182, 0.10839292435077155, 0.14565299209634927, 0.18103123823861497, 0.2739932254422281, 0.5837410613473842], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_26.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_26", "n_seqs": 1981, "length": 274, "gap_rates": [0.696113074204947, 0.34124179707218577, 0.14941948510853104, 0.10600706713780919, 0.07168096920747097, 0.07016658253407371, 0.0696617869762746, 0.07016658253407371, 0.07168096920747097, 0.06814740030287733, 0.06612821807168097, 0.06612821807168097, 0.06511862695608278, 0.06511862695608278, 0.06410903584048461, 0.06208985360928824, 0.06208985360928824, 0.06057546693589096, 0.05805148914689551, 0.057041898031297326, 0.057041898031297326, 0.057041898031297326, 0.057041898031297326, 0.05552751135790005, 0.05552751135790005, 0.1519434628975265, 0.1463907117617365, 0.9318525996971226, 0.9232710752145381, 0.14235234729934376, 0.13679959616355375, 0.1337708228167592, 0.05401312468450278, 0.0636042402826855, 0.05805148914689551, 0.05805148914689551, 0.05148914689550732, 0.04946996466431095, 0.048965169106511865, 0.04946996466431095, 0.04846037354871277, 0.048965169106511865, 0.048965169106511865, 0.049974760222110046, 0.09843513377082282, 0.5991923271075215, 0.6446239273094396, 0.6900555275113579, 0.8430085815244825, 0.8213023725391216, 0.6723876829883897, 0.6219081272084805, 0.5976779404341241, 0.14336193841494194, 0.8803634528016153, 0.12115093387178193, 0.0636042402826855, 0.8576476527006562, 0.8944977284199899, 0.9257950530035336, 0.906108026249369, 0.8773346794548208, 0.8536092882382635, 0.05502271580010096, 0.05401312468450278, 0.05047955577990914, 0.05199394245330641, 0.05350832912670368, 0.9131751640585563, 0.05047955577990914, 0.05047955577990914, 0.049974760222110046, 0.04946996466431095, 0.07824331145885917, 0.0873296314992428, 0.07420494699646643, 0.08531044926804644, 0.06713780918727916, 0.06865219586067643, 0.0706713780918728, 0.17364967188288744, 0.11206461383139828, 0.9313478041393236, 0.9348813730439172, 0.9328621908127208, 0.9298334174659263, 0.09237758707723372, 0.07925290257445734, 0.06259464916708733, 0.05401312468450278, 0.05199394245330641, 0.0524987380111055, 0.11812216052498738, 0.10045431600201918, 0.16456335184250379, 0.1458859162039374, 0.11963654719838465, 0.08581524482584553, 0.07016658253407371, 0.06612821807168097, 0.0646138313982837, 0.09237758707723372, 0.09641595153962645, 0.10853104492680464, 0.09843513377082282, 0.12468450277637556, 0.09389197375063099, 0.08531044926804644, 0.08884401817264008, 0.8243311458859162, 0.9146895507319536, 0.8611812216052499, 0.7359919232710752, 0.06612821807168097, 0.10651186269560828, 0.10954063604240283, 0.10752145381120647, 0.16658253407370016, 0.7253912165572943, 0.7940434124179707, 0.8197879858657244, 0.8303886925795053, 0.8430085815244825, 0.8475517415446744, 0.8854114083796063, 0.9257950530035336, 0.8773346794548208, 0.8460373548712772, 0.8349318525996972, 0.823321554770318, 0.8036345280161534, 0.7814235234729935, 0.2604745078243311, 0.20040383644623927, 0.17566885411408378, 0.11509338717819283, 0.06814740030287733, 0.07269056032306916, 0.04543160020191822, 0.04240282685512368, 0.038869257950530034, 0.016153457849570924, 0.9464916708732963, 0.9379101463907118, 0.015648662291771833, 0.01514386673397274, 0.013124684502776375, 0.013124684502776375, 0.011610297829379102, 0.011610297829379102, 0.01060070671378092, 0.01110550227158001, 0.011610297829379102, 0.012115093387178193, 0.011610297829379102, 0.01110550227158001, 0.9419485108531045, 0.012115093387178193, 0.012619888944977285, 0.9369005552751136, 0.013124684502776375, 0.013629480060575468, 0.013629480060575468, 0.013629480060575468, 0.8682483594144371, 0.6784452296819788, 0.013629480060575468, 0.013629480060575468, 0.01463907117617365, 0.013124684502776375, 0.012619888944977285, 0.011610297829379102, 0.01110550227158001, 0.01110550227158001, 0.012115093387178193, 0.01514386673397274, 0.012115093387178193, 0.016153457849570924, 0.012115093387178193, 0.012115093387178193, 0.012115093387178193, 0.012115093387178193, 0.012115093387178193, 0.012619888944977285, 0.012115093387178193, 0.012115093387178193, 0.012619888944977285, 0.013629480060575468, 0.93336698637052, 0.013629480060575468, 0.9454820797576982, 0.013124684502776375, 0.839475012619889, 0.013629480060575468, 0.013629480060575468, 0.013124684502776375, 0.014134275618374558, 0.012619888944977285, 0.012115093387178193, 0.012115093387178193, 0.012115093387178193, 0.012619888944977285, 0.023725391216557295, 0.02271580010095911, 0.01463907117617365, 0.9353861686017163, 0.9429581019687027, 0.9404341241797072, 0.8520949015648662, 0.017163048965169108, 0.06865219586067643, 0.0585562847046946, 0.04795557799091368, 0.01817264008076729, 0.02120141342756184, 0.02624936900555275, 0.02170620898536093, 0.02120141342756184, 0.02170620898536093, 0.024230186774356385, 0.02523977788995457, 0.02574457344775366, 0.9257950530035336, 0.9384149419485108, 0.9162039374053509, 0.11004543160020192, 0.08632004038364463, 0.05098435133770823, 0.04946996466431095, 0.5239777889954569, 0.5971731448763251, 0.8798586572438163, 0.629984856133266, 0.5562847046945987, 0.5148914689550732, 0.05552751135790005, 0.7617364967188289, 0.7824331145885917, 0.834427057041898, 0.9348813730439172, 0.9459868753154972, 0.9141847551741544, 0.7920242301867744, 0.7647652700656234, 0.7587077233720343, 0.07319535588086824, 0.07874810701665826, 0.07925290257445734, 0.08278647147905098, 0.08278647147905098, 0.09237758707723372, 0.10146390711761737, 0.1110550227158001, 0.13225643614336194, 0.13427561837455831, 0.9268046441191318, 0.9369005552751136, 0.9187279151943463, 0.16304896516910652, 0.17213528520949015, 0.17819283190307925, 0.19081272084805653, 0.21403331650681473, 0.2115093387178193, 0.21403331650681473, 0.23271075214538112, 0.2579505300353357, 0.3321554770318021, 0.39424533064109035, 0.48359414437152953, 0.5820292781423524, 0.6491670873296315, 0.7476022211004543, 0.8409893992932862], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_29.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_29", "n_seqs": 310, "length": 65, "gap_rates": [0.4258064516129032, 0.31290322580645163, 0.25806451612903225, 0.2161290322580645, 0.2064516129032258, 0.1967741935483871, 0.1967741935483871, 0.1967741935483871, 0.1935483870967742, 0.18064516129032257, 0.16774193548387098, 0.14516129032258066, 0.13548387096774195, 0.13225806451612904, 0.7129032258064516, 0.11935483870967742, 0.11612903225806452, 0.1032258064516129, 0.07096774193548387, 0.041935483870967745, 0.03870967741935484, 0.2806451612903226, 0.2645161290322581, 0.18387096774193548, 0.932258064516129, 0.6838709677419355, 0.22258064516129034, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0032258064516129032, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.01935483870967742, 0.041935483870967745, 0.04838709677419355, 0.054838709677419356, 0.07419354838709677, 0.8387096774193549, 0.6870967741935484, 0.34838709677419355, 0.24838709677419354, 0.16774193548387098, 0.17419354838709677, 0.18064516129032257, 0.2, 0.22580645161290322, 0.24838709677419354, 0.2838709677419355, 0.4032258064516129], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_32.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_32", "n_seqs": 513, "length": 535, "gap_rates": [0.5536062378167641, 0.50682261208577, 0.47368421052631576, 0.47173489278752434, 0.45419103313840153, 0.4191033138401559, 0.40545808966861596, 0.3567251461988304, 0.3333333333333333, 0.32748538011695905, 0.3235867446393762, 0.30994152046783624, 0.29434697855750486, 0.2884990253411306, 0.28654970760233917, 0.2826510721247563, 0.26900584795321636, 0.2631578947368421, 0.26120857699805067, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.2573099415204678, 0.2573099415204678, 0.2553606237816764, 0.2573099415204678, 0.2573099415204678, 0.2573099415204678, 0.2573099415204678, 0.2553606237816764, 0.2553606237816764, 0.2553606237816764, 0.2553606237816764, 0.253411306042885, 0.253411306042885, 0.253411306042885, 0.253411306042885, 0.253411306042885, 0.2553606237816764, 0.2573099415204678, 0.2573099415204678, 0.2553606237816764, 0.2553606237816764, 0.2553606237816764, 0.2553606237816764, 0.253411306042885, 0.253411306042885, 0.253411306042885, 0.253411306042885, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.2573099415204678, 0.253411306042885, 0.25146198830409355, 0.2573099415204678, 0.2631578947368421, 0.2553606237816764, 0.25146198830409355, 0.253411306042885, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.2651072124756335, 0.2729044834307992, 0.2709551656920078, 0.2553606237816764, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.25146198830409355, 0.2573099415204678, 0.253411306042885, 0.253411306042885, 0.2553606237816764, 0.2573099415204678, 0.25925925925925924, 0.26900584795321636, 0.26900584795321636, 0.26705653021442494, 0.2651072124756335, 0.290448343079922, 0.2651072124756335, 0.26705653021442494, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.27680311890838205, 0.2709551656920078, 0.26900584795321636, 0.26705653021442494, 0.26705653021442494, 0.26705653021442494, 0.26705653021442494, 0.26705653021442494, 0.26705653021442494, 0.26900584795321636, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2729044834307992, 0.2709551656920078, 0.2709551656920078, 0.27485380116959063, 0.27485380116959063, 0.2787524366471735, 0.27485380116959063, 0.27485380116959063, 0.27680311890838205, 0.27680311890838205, 0.27680311890838205, 0.9278752436647173, 0.9395711500974658, 0.9317738791423001, 0.8791423001949318, 0.2787524366471735, 0.27680311890838205, 0.27680311890838205, 0.27680311890838205, 0.2787524366471735, 0.2787524366471735, 0.2787524366471735, 0.884990253411306, 0.2807017543859649, 0.2807017543859649, 0.28460038986354774, 0.28460038986354774, 0.2884990253411306, 0.29239766081871343, 0.2884990253411306, 0.2884990253411306, 0.2884990253411306, 0.28654970760233917, 0.2826510721247563, 0.28460038986354774, 0.2884990253411306, 0.9317738791423001, 0.9317738791423001, 0.9317738791423001, 0.9317738791423001, 0.9317738791423001, 0.9317738791423001, 0.2807017543859649, 0.2826510721247563, 0.2807017543859649, 0.2826510721247563, 0.28460038986354774, 0.2826510721247563, 0.2826510721247563, 0.2826510721247563, 0.2826510721247563, 0.2826510721247563, 0.2787524366471735, 0.2787524366471735, 0.27680311890838205, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2729044834307992, 0.2729044834307992, 0.2729044834307992, 0.2709551656920078, 0.2709551656920078, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.26900584795321636, 0.2709551656920078, 0.2709551656920078, 0.2709551656920078, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.2709551656920078, 0.26900584795321636, 0.26900584795321636, 0.2709551656920078, 0.3489278752436647, 0.27680311890838205, 0.27485380116959063, 0.2709551656920078, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26705653021442494, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.26705653021442494, 0.26900584795321636, 0.26900584795321636, 0.26900584795321636, 0.26705653021442494, 0.2651072124756335, 0.26705653021442494, 0.26705653021442494, 0.26705653021442494, 0.28654970760233917, 0.3079922027290448, 0.35477582846003897, 0.3898635477582846, 0.6296296296296297, 0.7602339181286549, 0.8576998050682261, 0.9278752436647173, 0.8927875243664717, 0.8050682261208577, 0.6900584795321637, 0.5224171539961013, 0.46393762183235865, 0.42300194931773877, 0.3645224171539961, 0.30409356725146197, 0.2826510721247563, 0.26900584795321636, 0.2573099415204678, 0.2553606237816764, 0.24951267056530213, 0.24561403508771928, 0.23976608187134502, 0.23976608187134502, 0.1949317738791423, 0.15204678362573099, 0.14814814814814814, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.19103313840155944, 0.16764132553606237, 0.14035087719298245, 0.1364522417153996, 0.13060428849902533, 0.13060428849902533, 0.1286549707602339, 0.1286549707602339, 0.1286549707602339, 0.1267056530214425, 0.12475633528265107, 0.12475633528265107, 0.12475633528265107, 0.12475633528265107, 0.1267056530214425, 0.1267056530214425, 0.12475633528265107, 0.12475633528265107, 0.12280701754385964, 0.12280701754385964, 0.1189083820662768, 0.11695906432748537, 0.1189083820662768, 0.11500974658869395, 0.11500974658869395, 0.11306042884990253, 0.11306042884990253, 0.1364522417153996, 0.9259259259259259, 0.8187134502923976, 0.1364522417153996, 0.12280701754385964, 0.1111111111111111, 0.11695906432748537, 0.11500974658869395, 0.11500974658869395, 0.10721247563352826, 0.09551656920077972, 0.0935672514619883, 0.07992202729044834, 0.07407407407407407, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07212475633528265, 0.07407407407407407, 0.07017543859649122, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.07017543859649122, 0.07017543859649122, 0.0682261208576998, 0.07017543859649122, 0.0682261208576998, 0.07407407407407407, 0.11306042884990253, 0.08771929824561403, 0.0935672514619883, 0.07017543859649122, 0.07212475633528265, 0.07407407407407407, 0.07017543859649122, 0.0682261208576998, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.06627680311890838, 0.06627680311890838, 0.08576998050682261, 0.10526315789473684, 0.17738791423001948, 0.17543859649122806, 0.32748538011695905, 0.18908382066276802, 0.16374269005847952, 0.15984405458089668, 0.1189083820662768, 0.08771929824561403, 0.08576998050682261, 0.08576998050682261, 0.08382066276803118, 0.07797270955165692, 0.07212475633528265, 0.07212475633528265, 0.07407407407407407, 0.07602339181286549, 0.07407407407407407, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.07602339181286549, 0.07602339181286549, 0.06627680311890838, 0.06627680311890838, 0.06627680311890838, 0.06627680311890838, 0.06627680311890838, 0.07017543859649122, 0.07212475633528265, 0.07602339181286549, 0.07992202729044834, 0.07602339181286549, 0.07212475633528265, 0.0682261208576998, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.0682261208576998, 0.0682261208576998, 0.0682261208576998, 0.07212475633528265, 0.07212475633528265, 0.07407407407407407, 0.07017543859649122, 0.10331384015594541, 0.07212475633528265, 0.07017543859649122, 0.07017543859649122, 0.0682261208576998, 0.07017543859649122, 0.06627680311890838, 0.06237816764132553, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.07407407407407407, 0.06042884990253411, 0.0682261208576998, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06627680311890838, 0.06432748538011696, 0.06237816764132553, 0.06627680311890838, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06042884990253411, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06042884990253411, 0.06432748538011696, 0.06237816764132553, 0.06042884990253411, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06237816764132553, 0.06432748538011696, 0.06432748538011696, 0.06627680311890838, 0.06627680311890838, 0.0682261208576998, 0.0682261208576998, 0.07017543859649122, 0.07017543859649122, 0.07212475633528265, 0.07212475633528265, 0.07602339181286549, 0.08187134502923976, 0.1267056530214425, 0.1539961013645224, 0.14230019493177387, 0.10331384015594541, 0.07797270955165692, 0.07602339181286549, 0.07602339181286549, 0.07407407407407407, 0.07602339181286549, 0.07797270955165692, 0.07797270955165692, 0.07797270955165692, 0.08771929824561403, 0.10136452241715399, 0.13060428849902533, 0.1695906432748538, 0.21442495126705652, 0.23391812865497075, 0.2651072124756335, 0.2962962962962963, 0.31189083820662766], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AAA_35.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AAA_35", "n_seqs": 670, "length": 397, "gap_rates": [0.8776119402985074, 0.7970149253731343, 0.735820895522388, 0.508955223880597, 0.48656716417910445, 0.4701492537313433, 0.4597014925373134, 0.44925373134328356, 0.4373134328358209, 0.42835820895522386, 0.4164179104477612, 0.4014925373134328, 0.36716417910447763, 0.3656716417910448, 0.3597014925373134, 0.3567164179104478, 0.3074626865671642, 0.5671641791044776, 0.29850746268656714, 0.2746268656716418, 0.26417910447761195, 0.25671641791044775, 0.24328358208955222, 0.22686567164179106, 0.208955223880597, 0.191044776119403, 0.191044776119403, 0.32985074626865674, 0.21194029850746268, 0.18208955223880596, 0.16865671641791044, 0.15074626865671642, 0.1417910447761194, 0.1253731343283582, 0.09402985074626866, 0.06716417910447761, 0.06865671641791045, 0.06716417910447761, 0.06567164179104477, 0.06417910447761194, 0.06417910447761194, 0.06119402985074627, 0.06119402985074627, 0.06119402985074627, 0.06119402985074627, 0.06119402985074627, 0.06119402985074627, 0.06119402985074627, 0.07611940298507462, 0.07313432835820896, 0.06417910447761194, 0.07014925373134329, 0.06567164179104477, 0.0626865671641791, 0.06716417910447761, 0.06716417910447761, 0.07164179104477612, 0.06716417910447761, 0.7044776119402985, 0.06119402985074627, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.06716417910447761, 0.06567164179104477, 0.06865671641791045, 0.06865671641791045, 0.2044776119402985, 0.16119402985074627, 0.1537313432835821, 0.12985074626865672, 0.16865671641791044, 0.935820895522388, 0.935820895522388, 0.9298507462686567, 0.09402985074626866, 0.08358208955223881, 0.06865671641791045, 0.0626865671641791, 0.0626865671641791, 0.0626865671641791, 0.0626865671641791, 0.06119402985074627, 0.0626865671641791, 0.0626865671641791, 0.06567164179104477, 0.06119402985074627, 0.0626865671641791, 0.06417910447761194, 0.06716417910447761, 0.06716417910447761, 0.08955223880597014, 0.09104477611940298, 0.09253731343283582, 0.11194029850746269, 0.8761194029850746, 0.8328358208955224, 0.11940298507462686, 0.1701492537313433, 0.9223880597014925, 0.9134328358208955, 0.15223880597014924, 0.08208955223880597, 0.09850746268656717, 0.10149253731343283, 0.0880597014925373, 0.746268656716418, 0.6567164179104478, 0.10298507462686567, 0.09253731343283582, 0.0791044776119403, 0.07462686567164178, 0.07611940298507462, 0.07462686567164178, 0.07611940298507462, 0.06567164179104477, 0.058208955223880594, 0.058208955223880594, 0.05223880597014925, 0.05373134328358209, 0.05970149253731343, 0.07014925373134329, 0.10746268656716418, 0.11343283582089553, 0.12388059701492538, 0.11044776119402985, 0.09701492537313433, 0.13134328358208955, 0.0791044776119403, 0.9059701492537313, 0.9253731343283582, 0.8716417910447761, 0.12686567164179105, 0.03283582089552239, 0.029850746268656716, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.028358208955223882, 0.028358208955223882, 0.029850746268656716, 0.04776119402985075, 0.3970149253731343, 0.2417910447761194, 0.04029850746268657, 0.03880597014925373, 0.12985074626865672, 0.11194029850746269, 0.04477611940298507, 0.03582089552238806, 0.034328358208955224, 0.034328358208955224, 0.03582089552238806, 0.03731343283582089, 0.03582089552238806, 0.034328358208955224, 0.03582089552238806, 0.03582089552238806, 0.04626865671641791, 0.049253731343283584, 0.058208955223880594, 0.06716417910447761, 0.7805970149253731, 0.8283582089552238, 0.8238805970149253, 0.7731343283582089, 0.09701492537313433, 0.09104477611940298, 0.07014925373134329, 0.06417910447761194, 0.0626865671641791, 0.056716417910447764, 0.049253731343283584, 0.04776119402985075, 0.04626865671641791, 0.04328358208955224, 0.041791044776119404, 0.03880597014925373, 0.041791044776119404, 0.8134328358208955, 0.04477611940298507, 0.05522388059701493, 0.9313432835820895, 0.0880597014925373, 0.08059701492537313, 0.04477611940298507, 0.041791044776119404, 0.041791044776119404, 0.05223880597014925, 0.8970149253731343, 0.9283582089552239, 0.9388059701492537, 0.9119402985074627, 0.7492537313432835, 0.04328358208955224, 0.04328358208955224, 0.03582089552238806, 0.8373134328358209, 0.03582089552238806, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.8208955223880597, 0.034328358208955224, 0.03582089552238806, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.034328358208955224, 0.9328358208955224, 0.034328358208955224, 0.034328358208955224, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.034328358208955224, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03582089552238806, 0.9134328358208955, 0.9194029850746268, 0.9164179104477612, 0.9059701492537313, 0.04776119402985075, 0.04328358208955224, 0.04477611940298507, 0.04776119402985075, 0.04776119402985075, 0.45223880597014926, 0.6850746268656717, 0.9283582089552239, 0.6761194029850747, 0.36716417910447763, 0.049253731343283584, 0.050746268656716415, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.058208955223880594, 0.08208955223880597, 0.10895522388059702, 0.13582089552238805, 0.13134328358208955, 0.1417910447761194, 0.14328358208955225, 0.14328358208955225, 0.15074626865671642, 0.15671641791044777, 0.17313432835820897, 0.8223880597014925, 0.8597014925373134, 0.8432835820895522, 0.7686567164179104, 0.20298507462686566, 0.21044776119402986, 0.21343283582089553, 0.755223880597015, 0.7776119402985074, 0.7970149253731343, 0.826865671641791, 0.9014925373134328, 0.9164179104477612, 0.9298507462686567, 0.9477611940298507, 0.9208955223880597, 0.9104477611940298, 0.8492537313432836, 0.808955223880597, 0.7835820895522388, 0.7656716417910447, 0.7477611940298508, 0.21940298507462686, 0.22835820895522388, 0.2253731343283582, 0.22835820895522388, 0.23134328358208955, 0.23134328358208955, 0.23134328358208955, 0.23880597014925373, 0.2373134328358209, 0.2373134328358209, 0.2417910447761194, 0.2462686567164179, 0.24477611940298508, 0.8880597014925373, 0.8537313432835821, 0.2656716417910448, 0.28507462686567164, 0.9104477611940298, 0.9059701492537313, 0.2626865671641791, 0.8925373134328358, 0.8716417910447761, 0.2417910447761194, 0.24029850746268658, 0.24029850746268658, 0.24328358208955222, 0.2417910447761194, 0.2417910447761194, 0.24328358208955222, 0.2462686567164179, 0.24925373134328357, 0.24925373134328357, 0.8850746268656716, 0.9014925373134328, 0.8880597014925373, 0.8492537313432836, 0.4417910447761194, 0.25970149253731345, 0.25522388059701495, 0.25522388059701495, 0.25522388059701495, 0.25671641791044775, 0.2582089552238806, 0.2582089552238806, 0.2582089552238806, 0.2582089552238806, 0.2582089552238806, 0.25970149253731345, 0.2582089552238806, 0.25970149253731345, 0.2582089552238806, 0.2835820895522388, 0.28507462686567164, 0.35074626865671643, 0.29253731343283584, 0.28955223880597014, 0.28955223880597014, 0.29850746268656714, 0.9223880597014925, 0.291044776119403, 0.29253731343283584, 0.2955223880597015, 0.29402985074626864, 0.29701492537313434, 0.2955223880597015, 0.29701492537313434, 0.2955223880597015, 0.33432835820895523, 0.32686567164179103, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.32985074626865674, 0.3402985074626866, 0.34626865671641793, 0.34776119402985073, 0.3447761194029851, 0.34626865671641793, 0.3492537313432836, 0.3522388059701492, 0.3522388059701492, 0.3537313432835821, 0.35522388059701493, 0.35522388059701493, 0.35522388059701493, 0.3582089552238806, 0.3701492537313433, 0.4164179104477612, 0.5223880597014925, 0.5283582089552239, 0.6149253731343284, 0.9492537313432836], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ABC_membrane_2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ABC_membrane_2", "n_seqs": 1202, "length": 299, "gap_rates": [0.9034941763727121, 0.5973377703826955, 0.5524126455906821, 0.49417637271214643, 0.42845257903494177, 0.38352745424292845, 0.3502495840266223, 0.33277870216306155, 0.3086522462562396, 0.2895174708818636, 0.27870216306156403, 0.27287853577371046, 0.26622296173044924, 0.26622296173044924, 0.2637271214642263, 0.26039933444259566, 0.2545757071547421, 0.24958402662229617, 0.7745424292845258, 0.25707154742096505, 0.240432612312812, 0.22878535773710482, 0.21880199667221298, 0.20881863560732114, 0.20133111480865223, 0.1896838602329451, 0.18469217970049917, 0.17970049916805325, 0.17304492512479203, 0.1713810316139767, 0.1605657237936772, 0.15973377703826955, 0.15806988352745424, 0.15391014975041598, 0.15307820299500832, 0.14891846921797006, 0.1497504159733777, 0.14725457570715475, 0.1447587354409318, 0.14309484193011648, 0.14309484193011648, 0.1405990016638935, 0.13976705490848584, 0.1389351081530782, 0.1389351081530782, 0.13810316139767054, 0.13727121464226288, 0.13643926788685523, 0.13560732113144758, 0.13227953410981697, 0.13061564059900166, 0.129783693843594, 0.12895174708818635, 0.1281198003327787, 0.1281198003327787, 0.1281198003327787, 0.12895174708818635, 0.12562396006655574, 0.1264559068219634, 0.12562396006655574, 0.12562396006655574, 0.12562396006655574, 0.12562396006655574, 0.12396006655574043, 0.12396006655574043, 0.12396006655574043, 0.12396006655574043, 0.12312811980033278, 0.12146422628951747, 0.11980033277870217, 0.12063227953410982, 0.12063227953410982, 0.11980033277870217, 0.11896838602329451, 0.11896838602329451, 0.11813643926788686, 0.11813643926788686, 0.11896838602329451, 0.12146422628951747, 0.12146422628951747, 0.11896838602329451, 0.11896838602329451, 0.11813643926788686, 0.11813643926788686, 0.11647254575707154, 0.11564059900166389, 0.11397670549084858, 0.11647254575707154, 0.11730449251247921, 0.11730449251247921, 0.11896838602329451, 0.11730449251247921, 0.11730449251247921, 0.11647254575707154, 0.11397670549084858, 0.11397670549084858, 0.11397670549084858, 0.11397670549084858, 0.11397670549084858, 0.11564059900166389, 0.11647254575707154, 0.11647254575707154, 0.11231281198003328, 0.11231281198003328, 0.11314475873544093, 0.11314475873544093, 0.11314475873544093, 0.11397670549084858, 0.11564059900166389, 0.11397670549084858, 0.11564059900166389, 0.11730449251247921, 0.11813643926788686, 0.11564059900166389, 0.8718801996672213, 0.11896838602329451, 0.11813643926788686, 0.11896838602329451, 0.11896838602329451, 0.13227953410981697, 0.12229617304492513, 0.1281198003327787, 0.13061564059900166, 0.12146422628951747, 0.11980033277870217, 0.9292845257903494, 0.8369384359400999, 0.24459234608985025, 0.11314475873544093, 0.11148086522462562, 0.1064891846921797, 0.10565723793677205, 0.1064891846921797, 0.10565723793677205, 0.1048252911813644, 0.10565723793677205, 0.10316139767054909, 0.10316139767054909, 0.10149750415973377, 0.10149750415973377, 0.10232945091514144, 0.10232945091514144, 0.10232945091514144, 0.10316139767054909, 0.10399334442595674, 0.10565723793677205, 0.1048252911813644, 0.10316139767054909, 0.10316139767054909, 0.10149750415973377, 0.10149750415973377, 0.10232945091514144, 0.10066555740432612, 0.09900166389351081, 0.09900166389351081, 0.09983361064891846, 0.09900166389351081, 0.09900166389351081, 0.09900166389351081, 0.09983361064891846, 0.09816971713810316, 0.09816971713810316, 0.0973377703826955, 0.0973377703826955, 0.0973377703826955, 0.09816971713810316, 0.09900166389351081, 0.09650582362728785, 0.0973377703826955, 0.09900166389351081, 0.09983361064891846, 0.09650582362728785, 0.09650582362728785, 0.0956738768718802, 0.0973377703826955, 0.0973377703826955, 0.0973377703826955, 0.7371048252911814, 0.742928452579035, 0.7462562396006656, 0.7961730449251248, 0.8036605657237936, 0.8535773710482529, 0.8660565723793677, 0.8643926788685524, 0.8502495840266223, 0.8019966722129783, 0.7945091514143094, 0.7445923460898503, 0.740432612312812, 0.7321131447587355, 0.19966722129783693, 0.09816971713810316, 0.09650582362728785, 0.09650582362728785, 0.09650582362728785, 0.0956738768718802, 0.09650582362728785, 0.09650582362728785, 0.0956738768718802, 0.0956738768718802, 0.0956738768718802, 0.09484193011647254, 0.09484193011647254, 0.09400998336106489, 0.09484193011647254, 0.0956738768718802, 0.0956738768718802, 0.0956738768718802, 0.09484193011647254, 0.09650582362728785, 0.09650582362728785, 0.09650582362728785, 0.09650582362728785, 0.09484193011647254, 0.09484193011647254, 0.0956738768718802, 0.09650582362728785, 0.09650582362728785, 0.0956738768718802, 0.0956738768718802, 0.09400998336106489, 0.09234608985024959, 0.09234608985024959, 0.09400998336106489, 0.09317803660565724, 0.09234608985024959, 0.09234608985024959, 0.09317803660565724, 0.09317803660565724, 0.09317803660565724, 0.09317803660565724, 0.09234608985024959, 0.09317803660565724, 0.09400998336106489, 0.09317803660565724, 0.09317803660565724, 0.09234608985024959, 0.09234608985024959, 0.09234608985024959, 0.09234608985024959, 0.09317803660565724, 0.09400998336106489, 0.09484193011647254, 0.09650582362728785, 0.09650582362728785, 0.0973377703826955, 0.09650582362728785, 0.09900166389351081, 0.09983361064891846, 0.09983361064891846, 0.09983361064891846, 0.09983361064891846, 0.10066555740432612, 0.10149750415973377, 0.10149750415973377, 0.10232945091514144, 0.10232945091514144, 0.10232945091514144, 0.10316139767054909, 0.10232945091514144, 0.1048252911813644, 0.1048252911813644, 0.10399334442595674, 0.1048252911813644, 0.10565723793677205, 0.10981697171381032, 0.11064891846921797, 0.11148086522462562, 0.11480865224625623, 0.11314475873544093, 0.11397670549084858, 0.11730449251247921, 0.11730449251247921, 0.11896838602329451, 0.11813643926788686, 0.11813643926788686, 0.11980033277870217, 0.12146422628951747, 0.12229617304492513, 0.12396006655574043, 0.5183028286189684, 0.13227953410981697, 0.13477537437603992, 0.13477537437603992, 0.13560732113144758, 0.13727121464226288, 0.13727121464226288, 0.13727121464226288, 0.13810316139767054, 0.1389351081530782, 0.1405990016638935, 0.14725457570715475, 0.15474209650582363, 0.1589018302828619, 0.17470881863560733, 0.21797004991680533, 0.2529118136439268, 0.3452579034941764], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ACT_4.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ACT_4", "n_seqs": 2400, "length": 80, "gap_rates": [0.7641666666666667, 0.34041666666666665, 0.19166666666666668, 0.1425, 0.08625, 0.03916666666666667, 0.01625, 0.0075, 0.005416666666666667, 0.005, 0.004166666666666667, 0.00375, 0.00375, 0.00375, 0.0033333333333333335, 0.004166666666666667, 0.00375, 0.0020833333333333333, 0.0020833333333333333, 0.0016666666666666668, 0.00125, 0.0016666666666666668, 0.00125, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0008333333333333334, 0.91, 0.0008333333333333334, 0.0008333333333333334, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0004166666666666667, 0.0008333333333333334, 0.0008333333333333334, 0.0008333333333333334, 0.0004166666666666667, 0.11916666666666667, 0.20375, 0.5820833333333333, 0.0175, 0.08166666666666667, 0.006666666666666667, 0.00375, 0.0016666666666666668, 0.00125, 0.00125, 0.00125, 0.00125, 0.00125, 0.0016666666666666668, 0.0016666666666666668, 0.0020833333333333333, 0.0020833333333333333, 0.0033333333333333335, 0.0033333333333333335, 0.00375, 0.00375, 0.00375, 0.00375, 0.004583333333333333, 0.004583333333333333, 0.004583333333333333, 0.005, 0.00625, 0.009166666666666667, 0.014166666666666666, 0.0225, 0.0275, 0.029583333333333333, 0.032916666666666664, 0.03666666666666667, 0.05333333333333334, 0.06208333333333333, 0.09875, 0.13791666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ACT_5.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ACT_5", "n_seqs": 1228, "length": 64, "gap_rates": [0.8070032573289903, 0.247557003257329, 0.09609120521172639, 0.015472312703583062, 0.008957654723127036, 0.004071661237785016, 0.003257328990228013, 0.0024429967426710096, 0.0024429967426710096, 0.0024429967426710096, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0008143322475570033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9014657980456026, 0.04071661237785016, 0.03257328990228013, 0.0008143322475570033, 0.0008143322475570033, 0.003257328990228013, 0.004071661237785016, 0.003257328990228013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10179153094462541, 0.0, 0.0024429967426710096, 0.0008143322475570033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004071661237785016, 0.006514657980456026, 0.008143322475570033, 0.009771986970684038, 0.028501628664495113, 0.15716612377850162], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AD.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AD", "n_seqs": 231, "length": 94, "gap_rates": [0.4069264069264069, 0.2077922077922078, 0.18614718614718614, 0.18614718614718614, 0.15584415584415584, 0.13852813852813853, 0.11255411255411256, 0.09956709956709957, 0.09523809523809523, 0.09090909090909091, 0.08658008658008658, 0.06926406926406926, 0.06060606060606061, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06060606060606061, 0.06060606060606061, 0.06060606060606061, 0.05627705627705628, 0.05194805194805195, 0.05627705627705628, 0.03896103896103896, 0.03463203463203463, 0.030303030303030304, 0.09090909090909091, 0.07792207792207792, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.021645021645021644, 0.9134199134199135, 0.017316017316017316, 0.48917748917748916, 0.025974025974025976, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.03463203463203463, 0.935064935064935, 0.08225108225108226, 0.03463203463203463, 0.03463203463203463, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.04329004329004329, 0.04329004329004329, 0.047619047619047616, 0.05627705627705628, 0.37662337662337664, 0.5670995670995671, 0.6233766233766234, 0.8051948051948052, 0.9090909090909091, 0.8831168831168831, 0.7835497835497836, 0.22510822510822512, 0.12987012987012986, 0.12554112554112554, 0.11688311688311688, 0.10822510822510822, 0.11688311688311688, 0.12121212121212122, 0.1341991341991342, 0.1341991341991342, 0.13852813852813853, 0.14285714285714285, 0.1645021645021645, 0.19913419913419914, 0.2727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ADH_zinc_N.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ADH_zinc_N", "n_seqs": 5000, "length": 149, "gap_rates": [0.2072, 0.0716, 0.0362, 0.0292, 0.0248, 0.0224, 0.0204, 0.0186, 0.0168, 0.0166, 0.0156, 0.0148, 0.0132, 0.0124, 0.5714, 0.0114, 0.012, 0.0114, 0.0118, 0.011, 0.0114, 0.01, 0.0098, 0.0644, 0.0114, 0.0198, 0.0118, 0.0112, 0.0098, 0.0086, 0.0084, 0.0082, 0.9274, 0.0078, 0.008, 0.009, 0.9302, 0.0096, 0.0098, 0.0276, 0.013, 0.0102, 0.0096, 0.009, 0.019, 0.0186, 0.0328, 0.1978, 0.8282, 0.9298, 0.9474, 0.8916, 0.7124, 0.1352, 0.1106, 0.0496, 0.0422, 0.0344, 0.028, 0.0244, 0.0242, 0.1054, 0.0924, 0.0696, 0.945, 0.9058, 0.4282, 0.0976, 0.009, 0.0088, 0.009, 0.0088, 0.0088, 0.009, 0.0094, 0.0106, 0.0122, 0.4386, 0.0378, 0.0408, 0.0416, 0.0448, 0.0468, 0.048, 0.0494, 0.0508, 0.0526, 0.0536, 0.056, 0.059, 0.0626, 0.0654, 0.9362, 0.0672, 0.0718, 0.0728, 0.0738, 0.0762, 0.0798, 0.0856, 0.0892, 0.0906, 0.1046, 0.863, 0.911, 0.9466, 0.92, 0.8958, 0.7594, 0.393, 0.1562, 0.1382, 0.1348, 0.1366, 0.1402, 0.1436, 0.1484, 0.1518, 0.1552, 0.1576, 0.1626, 0.1756, 0.1704, 0.1752, 0.1846, 0.1904, 0.1932, 0.1988, 0.205, 0.2152, 0.2254, 0.2346, 0.246, 0.26, 0.8972, 0.9298, 0.8268, 0.447, 0.3838, 0.4064, 0.4306, 0.454, 0.4736, 0.4976, 0.521, 0.5594, 0.6108, 0.6762, 0.8284], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ADPrib_exo_Tox.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ADPrib_exo_Tox", "n_seqs": 124, "length": 240, "gap_rates": [0.8870967741935484, 0.8306451612903226, 0.782258064516129, 0.7419354838709677, 0.7258064516129032, 0.7016129032258065, 0.6693548387096774, 0.6370967741935484, 0.6048387096774194, 0.5725806451612904, 0.5403225806451613, 0.49193548387096775, 0.46774193548387094, 0.4435483870967742, 0.41935483870967744, 0.3387096774193548, 0.9193548387096774, 0.9193548387096774, 0.9354838709677419, 0.9435483870967742, 0.9354838709677419, 0.9193548387096774, 0.9193548387096774, 0.27419354838709675, 0.25, 0.25, 0.23387096774193547, 0.23387096774193547, 0.23387096774193547, 0.21774193548387097, 0.21774193548387097, 0.18548387096774194, 0.18548387096774194, 0.1693548387096774, 0.1693548387096774, 0.1693548387096774, 0.3387096774193548, 0.9435483870967742, 0.1774193548387097, 0.16129032258064516, 0.1532258064516129, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.9435483870967742, 0.13709677419354838, 0.13709677419354838, 0.14516129032258066, 0.14516129032258066, 0.5806451612903226, 0.532258064516129, 0.5, 0.4435483870967742, 0.3064516129032258, 0.25, 0.3790322580645161, 0.5241935483870968, 0.8064516129032258, 0.21774193548387097, 0.20161290322580644, 0.1532258064516129, 0.12903225806451613, 0.11290322580645161, 0.12096774193548387, 0.8709677419354839, 0.8709677419354839, 0.8870967741935484, 0.9193548387096774, 0.9274193548387096, 0.9354838709677419, 0.9354838709677419, 0.9274193548387096, 0.9193548387096774, 0.9032258064516129, 0.8870967741935484, 0.8709677419354839, 0.8709677419354839, 0.20161290322580644, 0.1935483870967742, 0.12903225806451613, 0.10483870967741936, 0.10483870967741936, 0.11290322580645161, 0.12096774193548387, 0.12096774193548387, 0.11290322580645161, 0.12096774193548387, 0.11290322580645161, 0.6854838709677419, 0.10483870967741936, 0.11290322580645161, 0.0967741935483871, 0.08870967741935484, 0.0967741935483871, 0.1532258064516129, 0.12096774193548387, 0.11290322580645161, 0.08870967741935484, 0.08064516129032258, 0.08064516129032258, 0.10483870967741936, 0.49193548387096775, 0.46774193548387094, 0.4596774193548387, 0.41935483870967744, 0.4112903225806452, 0.5080645161290323, 0.5241935483870968, 0.6612903225806451, 0.6370967741935484, 0.6129032258064516, 0.6129032258064516, 0.6612903225806451, 0.8467741935483871, 0.8709677419354839, 0.8951612903225806, 0.9435483870967742, 0.8951612903225806, 0.8790322580645161, 0.8548387096774194, 0.8225806451612904, 0.5645161290322581, 0.3709677419354839, 0.2903225806451613, 0.1693548387096774, 0.13709677419354838, 0.16129032258064516, 0.1774193548387097, 0.1693548387096774, 0.16129032258064516, 0.25, 0.1532258064516129, 0.0967741935483871, 0.07258064516129033, 0.056451612903225805, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.016129032258064516, 0.8225806451612904, 0.8709677419354839, 0.9274193548387096, 0.8951612903225806, 0.8467741935483871, 0.7903225806451613, 0.3629032258064516, 0.31451612903225806, 0.10483870967741936, 0.07258064516129033, 0.07258064516129033, 0.056451612903225805, 0.056451612903225805, 0.04838709677419355, 0.7096774193548387, 0.8709677419354839, 0.9354838709677419, 0.9274193548387096, 0.7983870967741935, 0.6370967741935484, 0.22580645161290322, 0.08064516129032258, 0.06451612903225806, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.03225806451612903, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.024193548387096774, 0.04032258064516129, 0.04032258064516129, 0.04838709677419355, 0.056451612903225805, 0.06451612903225806, 0.04838709677419355, 0.07258064516129033, 0.9354838709677419, 0.08064516129032258, 0.07258064516129033, 0.08870967741935484, 0.06451612903225806, 0.782258064516129, 0.07258064516129033, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.06451612903225806, 0.13709677419354838, 0.14516129032258066, 0.16129032258064516, 0.1693548387096774, 0.1774193548387097, 0.20161290322580644, 0.21774193548387097, 0.28225806451612906, 0.29838709677419356, 0.33064516129032256, 0.3951612903225806, 0.4596774193548387, 0.6370967741935484, 0.717741935483871, 0.8709677419354839, 0.8790322580645161, 0.8951612903225806, 0.8790322580645161, 0.8790322580645161, 0.8709677419354839, 0.8629032258064516, 0.8548387096774194, 0.8548387096774194, 0.8709677419354839, 0.8709677419354839, 0.8870967741935484, 0.8951612903225806, 0.9032258064516129, 0.9112903225806451, 0.9112903225806451, 0.9274193548387096, 0.9354838709677419], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ADSL_C.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ADSL_C", "n_seqs": 1699, "length": 89, "gap_rates": [0.06003531489111242, 0.03649205414949971, 0.018246027074749854, 0.012360211889346674, 0.00824014125956445, 0.004120070629782225, 0.004120070629782225, 0.004120070629782225, 0.003531489111241907, 0.003531489111241907, 0.003531489111241907, 0.002942907592701589, 0.002942907592701589, 0.34196586227192466, 0.003531489111241907, 0.7633902295467923, 0.00529723366686286, 0.004120070629782225, 0.0017657445556209534, 0.0017657445556209534, 0.0011771630370806356, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0005885815185403178, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005885815185403178, 0.00529723366686286, 0.003531489111241907, 0.007651559741024131, 0.4891112419070041, 0.5544437904649794, 0.5679811653914068, 0.9399646851088875, 0.6003531489111242, 0.5615067686874632, 0.5361977633902295, 0.014125956444967627, 0.00529723366686286, 0.002942907592701589, 0.004708652148322542, 0.004120070629782225, 0.002354326074161271, 0.002354326074161271, 0.002942907592701589, 0.004120070629782225, 0.003531489111241907, 0.007062978222483814, 0.008828722778104767, 0.005885815185403178, 0.007651559741024131, 0.5344320188346086, 0.009417304296645085, 0.8787522071806946, 0.3937610359034726, 0.015303119482048263, 0.02413184226015303, 0.053560918187168925, 0.007062978222483814, 0.006474396703943496, 0.007651559741024131, 0.007062978222483814, 0.006474396703943496, 0.006474396703943496, 0.9234844025897587, 0.006474396703943496, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.007062978222483814, 0.00824014125956445, 0.009417304296645085, 0.009417304296645085, 0.011771630370806356, 0.015891701000588582, 0.02707474985285462, 0.03590347263095939, 0.0659211300765156, 0.12654502648616833, 0.43437316068275456], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AIG2_2.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AIG2_2", "n_seqs": 356, "length": 106, "gap_rates": [0.4157303370786517, 0.13202247191011235, 0.05898876404494382, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.047752808988764044, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.19101123595505617, 0.15730337078651685, 0.15730337078651685, 0.28651685393258425, 0.033707865168539325, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.019662921348314606, 0.025280898876404494, 0.019662921348314606, 0.016853932584269662, 0.016853932584269662, 0.9353932584269663, 0.9382022471910112, 0.949438202247191, 0.9353932584269663, 0.9353932584269663, 0.016853932584269662, 0.02247191011235955, 0.9438202247191011, 0.8539325842696629, 0.10674157303370786, 0.014044943820224719, 0.016853932584269662, 0.2556179775280899, 0.019662921348314606, 0.014044943820224719, 0.008426966292134831, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.0056179775280898875, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.008426966292134831, 0.9382022471910112, 0.0056179775280898875, 0.8848314606741573, 0.8089887640449438, 0.0056179775280898875, 0.0028089887640449437, 0.8960674157303371, 0.7893258426966292, 0.0056179775280898875, 0.0, 0.8455056179775281, 0.8595505617977528, 0.8820224719101124, 0.8904494382022472, 0.9073033707865169, 0.9241573033707865, 0.9073033707865169, 0.8848314606741573, 0.8792134831460674, 0.8455056179775281, 0.8426966292134831, 0.0, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.0056179775280898875, 0.011235955056179775, 0.011235955056179775, 0.014044943820224719, 0.016853932584269662, 0.042134831460674156, 0.06460674157303371, 0.025280898876404494, 0.02247191011235955, 0.025280898876404494, 0.025280898876404494, 0.025280898876404494, 0.028089887640449437, 0.033707865168539325, 0.033707865168539325, 0.05056179775280899, 0.13764044943820225, 0.25280898876404495], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AIM24.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AIM24", "n_seqs": 1310, "length": 277, "gap_rates": [0.517557251908397, 0.42824427480916033, 0.3893129770992366, 0.36259541984732824, 0.3320610687022901, 0.3137404580152672, 0.8183206106870229, 0.2786259541984733, 0.22366412213740458, 0.15877862595419848, 0.13206106870229006, 0.12366412213740458, 0.11450381679389313, 0.10458015267175573, 0.10076335877862595, 0.09923664122137404, 0.14427480916030536, 0.16717557251908396, 0.10534351145038168, 0.1251908396946565, 0.05877862595419847, 0.05267175572519084, 0.04885496183206107, 0.048091603053435114, 0.048091603053435114, 0.04732824427480916, 0.04732824427480916, 0.04732824427480916, 0.04351145038167939, 0.04351145038167939, 0.04351145038167939, 0.044274809160305344, 0.04732824427480916, 0.0450381679389313, 0.0450381679389313, 0.0450381679389313, 0.0450381679389313, 0.09465648854961832, 0.09541984732824428, 0.08702290076335878, 0.17709923664122137, 0.34961832061068704, 0.6587786259541984, 0.766412213740458, 0.7992366412213741, 0.8274809160305343, 0.8519083969465648, 0.9305343511450381, 0.8381679389312977, 0.8076335877862595, 0.7893129770992366, 0.7290076335877863, 0.6358778625954199, 0.18396946564885497, 0.1633587786259542, 0.08473282442748091, 0.09541984732824428, 0.08931297709923663, 0.08473282442748091, 0.08091603053435115, 0.08244274809160305, 0.08244274809160305, 0.08091603053435115, 0.8587786259541985, 0.07862595419847328, 0.9496183206106871, 0.0450381679389313, 0.04198473282442748, 0.04122137404580153, 0.04198473282442748, 0.05114503816793893, 0.04580152671755725, 0.04351145038167939, 0.04122137404580153, 0.04122137404580153, 0.04122137404580153, 0.04198473282442748, 0.04045801526717557, 0.9320610687022901, 0.9435114503816794, 0.8885496183206106, 0.10687022900763359, 0.27022900763358776, 0.40534351145038167, 0.32595419847328244, 0.1763358778625954, 0.783206106870229, 0.03358778625954199, 0.03282442748091603, 0.031297709923664124, 0.031297709923664124, 0.031297709923664124, 0.03206106870229008, 0.03358778625954199, 0.04122137404580153, 0.03282442748091603, 0.035114503816793895, 0.051908396946564885, 0.7267175572519083, 0.06717557251908397, 0.025954198473282442, 0.028244274809160305, 0.02748091603053435, 0.025954198473282442, 0.025954198473282442, 0.20916030534351146, 0.7282442748091603, 0.36870229007633587, 0.16030534351145037, 0.04122137404580153, 0.08625954198473282, 0.025954198473282442, 0.025954198473282442, 0.025954198473282442, 0.025954198473282442, 0.026717557251908396, 0.026717557251908396, 0.025954198473282442, 0.025190839694656488, 0.025190839694656488, 0.025190839694656488, 0.02366412213740458, 0.02366412213740458, 0.025190839694656488, 0.026717557251908396, 0.02748091603053435, 0.025954198473282442, 0.06870229007633588, 0.04198473282442748, 0.04045801526717557, 0.03206106870229008, 0.028244274809160305, 0.02900763358778626, 0.031297709923664124, 0.17862595419847327, 0.9381679389312977, 0.20763358778625954, 0.23053435114503817, 0.2816793893129771, 0.11068702290076336, 0.11984732824427481, 0.11908396946564885, 0.083206106870229, 0.12290076335877863, 0.09312977099236641, 0.15648854961832062, 0.08549618320610687, 0.07786259541984733, 0.06564885496183206, 0.04198473282442748, 0.019083969465648856, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.016793893129770993, 0.9442748091603054, 0.9442748091603054, 0.9427480916030534, 0.022900763358778626, 0.0183206106870229, 0.017557251908396947, 0.017557251908396947, 0.017557251908396947, 0.01603053435114504, 0.016793893129770993, 0.01603053435114504, 0.016793893129770993, 0.24961832061068703, 0.14274809160305343, 0.07022900763358779, 0.06870229007633588, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.019083969465648856, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.0183206106870229, 0.04580152671755725, 0.04580152671755725, 0.8946564885496183, 0.9, 0.9213740458015267, 0.9274809160305344, 0.9312977099236641, 0.933587786259542, 0.934351145038168, 0.9320610687022901, 0.9305343511450381, 0.9244274809160306, 0.9198473282442748, 0.8954198473282443, 0.8923664122137405, 0.021374045801526718, 0.035114503816793895, 0.035114503816793895, 0.03435114503816794, 0.03435114503816794, 0.031297709923664124, 0.030534351145038167, 0.046564885496183206, 0.7259541984732825, 0.9183206106870229, 0.7778625954198474, 0.5816793893129771, 0.030534351145038167, 0.8938931297709923, 0.8946564885496183, 0.9122137404580153, 0.9152671755725191, 0.9213740458015267, 0.9236641221374046, 0.9236641221374046, 0.9244274809160306, 0.9251908396946565, 0.9259541984732824, 0.9267175572519084, 0.9274809160305344, 0.9305343511450381, 0.932824427480916, 0.9389312977099237, 0.932824427480916, 0.9290076335877863, 0.9274809160305344, 0.9267175572519084, 0.9251908396946565, 0.9251908396946565, 0.9244274809160306, 0.9236641221374046, 0.9229007633587786, 0.916793893129771, 0.9122137404580153, 0.8954198473282443, 0.8938931297709923, 0.8916030534351145, 0.04122137404580153, 0.038931297709923665, 0.03740458015267176, 0.025190839694656488, 0.03206106870229008, 0.03206106870229008, 0.22442748091603054, 0.02900763358778626, 0.026717557251908396, 0.02366412213740458, 0.022900763358778626, 0.031297709923664124, 0.6534351145038167, 0.024427480916030534, 0.025954198473282442, 0.026717557251908396, 0.026717557251908396, 0.02748091603053435, 0.030534351145038167, 0.030534351145038167, 0.031297709923664124, 0.03206106870229008, 0.03282442748091603, 0.03282442748091603, 0.03358778625954199, 0.04961832061068702, 0.07709923664122137, 0.5916030534351145], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ALAD.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ALAD", "n_seqs": 1818, "length": 336, "gap_rates": [0.3047304730473047, 0.21012101210121012, 0.19086908690869087, 0.1639163916391639, 0.15841584158415842, 0.13806380638063806, 0.09900990099009901, 0.09570957095709572, 0.09185918591859187, 0.0891089108910891, 0.10066006600660066, 0.07535753575357536, 0.0748074807480748, 0.07425742574257425, 0.06545654565456546, 0.0627062706270627, 0.06215621562156216, 0.06435643564356436, 0.06105610561056106, 0.06105610561056106, 0.0594059405940594, 0.05885588558855886, 0.058305830583058306, 0.058305830583058306, 0.058305830583058306, 0.05720572057205721, 0.05720572057205721, 0.05720572057205721, 0.05720572057205721, 0.05500550055005501, 0.05500550055005501, 0.054455445544554455, 0.054455445544554455, 0.05500550055005501, 0.07425742574257425, 0.09570957095709572, 0.06490649064906491, 0.058305830583058306, 0.05500550055005501, 0.05555555555555555, 0.05500550055005501, 0.054455445544554455, 0.054455445544554455, 0.05335533553355336, 0.048954895489548955, 0.048954895489548955, 0.04950495049504951, 0.04950495049504951, 0.048954895489548955, 0.048954895489548955, 0.048954895489548955, 0.04950495049504951, 0.048954895489548955, 0.048954895489548955, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.048954895489548955, 0.048954895489548955, 0.05005500550055005, 0.05005500550055005, 0.04950495049504951, 0.0484048404840484, 0.0484048404840484, 0.0484048404840484, 0.048954895489548955, 0.048954895489548955, 0.048954895489548955, 0.0484048404840484, 0.047304730473047306, 0.047304730473047306, 0.06105610561056106, 0.05005500550055005, 0.048954895489548955, 0.8184818481848185, 0.7376237623762376, 0.04950495049504951, 0.04785478547854786, 0.7414741474147415, 0.6551155115511551, 0.046754675467546754, 0.04785478547854786, 0.04785478547854786, 0.04785478547854786, 0.04785478547854786, 0.04785478547854786, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.05005500550055005, 0.0484048404840484, 0.0484048404840484, 0.048954895489548955, 0.048954895489548955, 0.04785478547854786, 0.0484048404840484, 0.048954895489548955, 0.048954895489548955, 0.04950495049504951, 0.048954895489548955, 0.048954895489548955, 0.0484048404840484, 0.0484048404840484, 0.0484048404840484, 0.05005500550055005, 0.06325632563256325, 0.8503850385038504, 0.0484048404840484, 0.047304730473047306, 0.0462046204620462, 0.04565456545654566, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.046754675467546754, 0.046754675467546754, 0.046754675467546754, 0.046754675467546754, 0.0462046204620462, 0.0462046204620462, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.9323432343234324, 0.04565456545654566, 0.742024202420242, 0.045104510451045104, 0.046754675467546754, 0.0462046204620462, 0.8652365236523653, 0.8998899889988999, 0.9416941694169417, 0.8960396039603961, 0.7447744774477447, 0.0462046204620462, 0.04565456545654566, 0.045104510451045104, 0.04565456545654566, 0.0462046204620462, 0.0462046204620462, 0.04565456545654566, 0.04565456545654566, 0.045104510451045104, 0.04455445544554455, 0.04455445544554455, 0.043454345434543455, 0.0429042904290429, 0.043454345434543455, 0.04400440044004401, 0.045104510451045104, 0.045104510451045104, 0.04455445544554455, 0.045104510451045104, 0.04455445544554455, 0.04400440044004401, 0.045104510451045104, 0.04565456545654566, 0.045104510451045104, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.04565456545654566, 0.0429042904290429, 0.04235423542354235, 0.04235423542354235, 0.041804180418041806, 0.041254125412541254, 0.041254125412541254, 0.041254125412541254, 0.041254125412541254, 0.041254125412541254, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041254125412541254, 0.041254125412541254, 0.8932893289328933, 0.04455445544554455, 0.0429042904290429, 0.043454345434543455, 0.043454345434543455, 0.043454345434543455, 0.04235423542354235, 0.04235423542354235, 0.04235423542354235, 0.04235423542354235, 0.0429042904290429, 0.041804180418041806, 0.04235423542354235, 0.04235423542354235, 0.04235423542354235, 0.0429042904290429, 0.04235423542354235, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.04235423542354235, 0.04235423542354235, 0.0429042904290429, 0.04235423542354235, 0.04235423542354235, 0.0429042904290429, 0.0429042904290429, 0.04235423542354235, 0.933993399339934, 0.8916391639163916, 0.0429042904290429, 0.17271727172717272, 0.9477447744774478, 0.8872387238723872, 0.05115511551155116, 0.041804180418041806, 0.9202420242024203, 0.918041804180418, 0.04235423542354235, 0.04235423542354235, 0.041804180418041806, 0.04235423542354235, 0.043454345434543455, 0.043454345434543455, 0.04235423542354235, 0.04235423542354235, 0.04235423542354235, 0.04235423542354235, 0.041804180418041806, 0.041804180418041806, 0.041804180418041806, 0.041254125412541254, 0.043454345434543455, 0.041254125412541254, 0.041254125412541254, 0.041254125412541254, 0.0407040704070407, 0.04235423542354235, 0.0407040704070407, 0.041254125412541254, 0.0407040704070407, 0.039603960396039604, 0.03905390539053905, 0.03905390539053905, 0.040154015401540157, 0.040154015401540157, 0.039603960396039604, 0.039603960396039604, 0.03850385038503851, 0.03850385038503851, 0.03850385038503851, 0.0374037403740374, 0.037953795379537955, 0.037953795379537955, 0.037953795379537955, 0.0374037403740374, 0.03685368536853685, 0.037953795379537955, 0.0374037403740374, 0.0374037403740374, 0.0374037403740374, 0.0374037403740374, 0.03685368536853685, 0.036303630363036306, 0.040154015401540157, 0.036303630363036306, 0.036303630363036306, 0.8734873487348734, 0.0352035203520352, 0.035753575357535754, 0.035753575357535754, 0.035753575357535754, 0.035753575357535754, 0.035753575357535754, 0.035753575357535754, 0.035753575357535754, 0.03685368536853685, 0.03905390539053905, 0.039603960396039604, 0.040154015401540157, 0.040154015401540157, 0.040154015401540157, 0.040154015401540157, 0.040154015401540157, 0.040154015401540157, 0.040154015401540157, 0.039603960396039604, 0.040154015401540157, 0.0407040704070407, 0.041804180418041806, 0.041804180418041806, 0.040154015401540157, 0.04455445544554455, 0.05555555555555555, 0.054455445544554455, 0.046754675467546754, 0.04455445544554455, 0.040154015401540157, 0.040154015401540157, 0.0407040704070407, 0.0407040704070407, 0.0407040704070407, 0.0407040704070407, 0.0407040704070407, 0.0407040704070407, 0.0407040704070407, 0.041804180418041806, 0.041804180418041806, 0.04235423542354235, 0.043454345434543455, 0.04455445544554455, 0.04565456545654566, 0.047304730473047306, 0.047304730473047306, 0.047304730473047306, 0.047304730473047306, 0.0484048404840484, 0.0484048404840484, 0.0484048404840484, 0.05005500550055005, 0.05005500550055005, 0.052255225522552254, 0.06325632563256325, 0.14466446644664466, 0.5852585258525853], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ALG3.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ALG3", "n_seqs": 336, "length": 411, "gap_rates": [0.41964285714285715, 0.34523809523809523, 0.31845238095238093, 0.3125, 0.30952380952380953, 0.30952380952380953, 0.30654761904761907, 0.30654761904761907, 0.30654761904761907, 0.30357142857142855, 0.3005952380952381, 0.3005952380952381, 0.3005952380952381, 0.3005952380952381, 0.3005952380952381, 0.29464285714285715, 0.28869047619047616, 0.2767857142857143, 0.26785714285714285, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.18452380952380953, 0.17559523809523808, 0.18154761904761904, 0.18154761904761904, 0.18154761904761904, 0.18154761904761904, 0.17857142857142858, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16666666666666666, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.15178571428571427, 0.15178571428571427, 0.15476190476190477, 0.15476190476190477, 0.15476190476190477, 0.23511904761904762, 0.23511904761904762, 0.17559523809523808, 0.18154761904761904, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.16666666666666666, 0.16964285714285715, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.16964285714285715, 0.16964285714285715, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.16964285714285715, 0.46130952380952384, 0.1875, 0.17559523809523808, 0.17559523809523808, 0.17261904761904762, 0.17857142857142858, 0.17559523809523808, 0.18154761904761904, 0.18154761904761904, 0.18452380952380953, 0.18452380952380953, 0.18452380952380953, 0.18452380952380953, 0.18154761904761904, 0.7619047619047619, 0.17857142857142858, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.16964285714285715, 0.16964285714285715, 0.17261904761904762, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.14583333333333334, 0.14583333333333334, 0.1488095238095238, 0.1488095238095238, 0.15476190476190477, 0.15178571428571427, 0.15178571428571427, 0.15178571428571427, 0.15178571428571427, 0.15773809523809523, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16666666666666666, 0.1636904761904762, 0.9375, 0.9375, 0.9404761904761905, 0.9464285714285714, 0.9434523809523809, 0.9375, 0.9375, 0.9375, 0.1636904761904762, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16964285714285715, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17559523809523808, 0.17559523809523808, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.1636904761904762, 0.15773809523809523, 0.15773809523809523, 0.15773809523809523, 0.15773809523809523, 0.15773809523809523, 0.15773809523809523, 0.15773809523809523, 0.16071428571428573, 0.16071428571428573, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.9226190476190477, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.16666666666666666, 0.16666666666666666, 0.16964285714285715, 0.16964285714285715, 0.17261904761904762, 0.17559523809523808, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.16964285714285715, 0.17261904761904762, 0.17261904761904762, 0.16964285714285715, 0.16666666666666666, 0.16964285714285715, 0.17261904761904762, 0.16964285714285715, 0.16964285714285715, 0.16964285714285715, 0.17261904761904762, 0.17857142857142858, 0.18154761904761904, 0.17261904761904762, 0.9494047619047619, 0.9494047619047619, 0.9494047619047619, 0.17857142857142858, 0.17559523809523808, 0.17559523809523808, 0.17559523809523808, 0.17559523809523808, 0.17559523809523808, 0.18154761904761904, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17559523809523808, 0.17559523809523808, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17261904761904762, 0.17559523809523808, 0.17559523809523808, 0.17857142857142858, 0.18154761904761904, 0.18154761904761904, 0.18154761904761904, 0.18154761904761904, 0.18452380952380953, 0.18452380952380953, 0.18154761904761904, 0.18452380952380953, 0.1875, 0.19047619047619047, 0.1875, 0.18452380952380953, 0.18154761904761904, 0.18154761904761904, 0.18452380952380953, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19345238095238096, 0.19345238095238096, 0.19940476190476192, 0.19345238095238096, 0.19642857142857142, 0.9434523809523809, 0.9404761904761905, 0.2708333333333333, 0.19345238095238096, 0.19047619047619047, 0.19047619047619047, 0.19345238095238096, 0.19345238095238096, 0.20238095238095238, 0.19642857142857142, 0.25, 0.24702380952380953, 0.7351190476190477, 0.7380952380952381, 0.7738095238095238, 0.7827380952380952, 0.8035714285714286, 0.8422619047619048, 0.8660714285714286, 0.8898809523809523, 0.8601190476190477, 0.8244047619047619, 0.7886904761904762, 0.7767857142857143, 0.7380952380952381, 0.7351190476190477, 0.7172619047619048, 0.24107142857142858, 0.40773809523809523, 0.39880952380952384, 0.375, 0.9494047619047619, 0.3958333333333333, 0.35714285714285715, 0.35714285714285715, 0.3630952380952381, 0.36904761904761907, 0.36607142857142855, 0.3630952380952381, 0.36607142857142855, 0.3630952380952381, 0.36607142857142855, 0.36607142857142855, 0.38095238095238093, 0.9345238095238095, 0.9434523809523809, 0.8988095238095238, 0.2113095238095238, 0.5327380952380952, 0.5327380952380952, 0.5505952380952381, 0.5982142857142857, 0.7232142857142857, 0.7738095238095238, 0.8035714285714286, 0.8779761904761905, 0.9047619047619048, 0.9285714285714286, 0.9404761904761905, 0.9494047619047619, 0.9315476190476191, 0.9196428571428571, 0.8839285714285714, 0.8214285714285714, 0.7857142857142857, 0.7380952380952381, 0.6755952380952381, 0.5654761904761905, 0.5416666666666666, 0.5327380952380952, 0.5327380952380952, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20535714285714285, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.20535714285714285, 0.20535714285714285, 0.2113095238095238, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.2113095238095238, 0.9077380952380952, 0.9494047619047619, 0.9166666666666666, 0.8839285714285714, 0.23511904761904762, 0.23511904761904762, 0.23511904761904762, 0.24107142857142858, 0.24107142857142858, 0.23809523809523808, 0.24107142857142858, 0.24107142857142858, 0.24107142857142858, 0.24702380952380953, 0.24702380952380953, 0.24702380952380953, 0.24702380952380953, 0.24702380952380953, 0.24702380952380953, 0.24702380952380953, 0.25297619047619047, 0.25297619047619047, 0.25297619047619047, 0.25595238095238093, 0.25892857142857145, 0.26785714285714285, 0.2708333333333333, 0.27380952380952384, 0.27380952380952384, 0.27380952380952384, 0.2767857142857143, 0.28273809523809523], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ALS_ss_C.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ALS_ss_C", "n_seqs": 1858, "length": 75, "gap_rates": [0.11463939720129171, 0.08073196986006459, 0.07588805166846072, 0.07427341227125941, 0.073735199138859, 0.073735199138859, 0.073735199138859, 0.07265877287405813, 0.07265877287405813, 0.07265877287405813, 0.07158234660925726, 0.06942949407965554, 0.08665231431646932, 0.8858988159311088, 0.038751345532831, 0.0193756727664155, 0.01022604951560818, 0.003767491926803014, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.0016146393972012918, 0.001076426264800861, 0.001076426264800861, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.001076426264800861, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.0005382131324004305, 0.0016146393972012918, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.002152852529601722, 0.0032292787944025836, 0.004305705059203444, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.002691065662002153, 0.003767491926803014, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.004843918191603875, 0.005920344456404736, 0.008611410118406888, 0.01883745963401507, 0.07534983853606028, 0.40204520990312165], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AMOP.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AMOP", "n_seqs": 209, "length": 214, "gap_rates": [0.42105263157894735, 0.22009569377990432, 0.16267942583732056, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.7464114832535885, 0.14354066985645933, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.7416267942583732, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.13875598086124402, 0.1339712918660287, 0.12440191387559808, 0.11961722488038277, 0.1291866028708134, 0.13875598086124402, 0.45933014354066987, 0.4354066985645933, 0.42105263157894735, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.7511961722488039, 0.7559808612440191, 0.7655502392344498, 0.7703349282296651, 0.7703349282296651, 0.8181818181818182, 0.7703349282296651, 0.7703349282296651, 0.7655502392344498, 0.7655502392344498, 0.7511961722488039, 0.7511961722488039, 0.11483253588516747, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.11004784688995216, 0.10526315789473684, 0.11004784688995216, 0.10047846889952153, 0.10047846889952153, 0.10047846889952153, 0.35406698564593303, 0.3588516746411483, 0.37320574162679426, 0.3684210526315789, 0.3684210526315789, 0.8277511961722488, 0.1339712918660287, 0.14354066985645933, 0.13875598086124402, 0.14832535885167464, 0.12440191387559808, 0.12440191387559808, 0.1291866028708134, 0.6124401913875598, 0.6889952153110048, 0.13875598086124402, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.13875598086124402, 0.13875598086124402, 0.13875598086124402, 0.1339712918660287, 0.1339712918660287, 0.13875598086124402, 0.14354066985645933, 0.14354066985645933, 0.14832535885167464, 0.14354066985645933, 0.14354066985645933, 0.7320574162679426, 0.631578947368421, 0.13875598086124402, 0.13875598086124402, 0.11961722488038277, 0.8516746411483254, 0.8516746411483254, 0.8564593301435407, 0.861244019138756, 0.8660287081339713, 0.8660287081339713, 0.8660287081339713, 0.8708133971291866, 0.8851674641148325, 0.8947368421052632, 0.8708133971291866, 0.8660287081339713, 0.8660287081339713, 0.8660287081339713, 0.861244019138756, 0.8564593301435407, 0.8564593301435407, 0.8516746411483254, 0.8516746411483254, 0.11961722488038277, 0.11961722488038277, 0.11961722488038277, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11004784688995216, 0.11004784688995216, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11483253588516747, 0.11004784688995216, 0.35406698564593303, 0.35406698564593303, 0.4449760765550239, 0.41626794258373206, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.861244019138756, 0.7559808612440191, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.722488038277512, 0.37799043062200954, 0.37799043062200954, 0.3827751196172249, 0.3827751196172249, 0.3827751196172249, 0.3875598086124402, 0.3875598086124402, 0.14832535885167464, 0.15311004784688995, 0.13875598086124402, 0.1339712918660287, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.12440191387559808, 0.1291866028708134, 0.13875598086124402, 0.13875598086124402, 0.14832535885167464, 0.16267942583732056, 0.1339712918660287, 0.12440191387559808, 0.12440191387559808, 0.11961722488038277, 0.11961722488038277, 0.3588516746411483, 0.12440191387559808, 0.1339712918660287, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1291866028708134, 0.1339712918660287, 0.1339712918660287, 0.1339712918660287, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7703349282296651, 0.7703349282296651, 0.7703349282296651, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7655502392344498, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.7607655502392344, 0.1339712918660287, 0.14354066985645933, 0.14354066985645933, 0.15311004784688995, 0.16267942583732056, 0.39712918660287083, 0.430622009569378, 0.861244019138756, 0.8564593301435407, 0.5980861244019139, 0.40669856459330145, 0.3349282296650718, 0.3444976076555024, 0.36363636363636365, 0.4258373205741627, 0.7511961722488039], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ANAPC4.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ANAPC4", "n_seqs": 264, "length": 216, "gap_rates": [0.7878787878787878, 0.5606060606060606, 0.4393939393939394, 0.38636363636363635, 0.3143939393939394, 0.2916666666666667, 0.2727272727272727, 0.26515151515151514, 0.25757575757575757, 0.24621212121212122, 0.2727272727272727, 0.2727272727272727, 0.3409090909090909, 0.29924242424242425, 0.20075757575757575, 0.17803030303030304, 0.1590909090909091, 0.1553030303030303, 0.15151515151515152, 0.14015151515151514, 0.13257575757575757, 0.13636363636363635, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10984848484848485, 0.10984848484848485, 0.10606060606060606, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.10227272727272728, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.10227272727272728, 0.10984848484848485, 0.9242424242424242, 0.928030303030303, 0.9356060606060606, 0.928030303030303, 0.9242424242424242, 0.9242424242424242, 0.10984848484848485, 0.10984848484848485, 0.09848484848484848, 0.09848484848484848, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.10227272727272728, 0.10227272727272728, 0.0946969696969697, 0.0946969696969697, 0.0946969696969697, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.1590909090909091, 0.17803030303030304, 0.16666666666666666, 0.17424242424242425, 0.19318181818181818, 0.9166666666666666, 0.946969696969697, 0.9356060606060606, 0.8371212121212122, 0.696969696969697, 0.4734848484848485, 0.19318181818181818, 0.13636363636363635, 0.10227272727272728, 0.0946969696969697, 0.09090909090909091, 0.07196969696969698, 0.08333333333333333, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.07196969696969698, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.07196969696969698, 0.07575757575757576, 0.07575757575757576, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.08712121212121213, 0.9356060606060606, 0.9242424242424242, 0.0946969696969697, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07575757575757576, 0.07575757575757576, 0.08712121212121213, 0.08712121212121213, 0.09090909090909091, 0.09090909090909091, 0.08712121212121213, 0.08712121212121213, 0.07196969696969698, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06439393939393939, 0.06818181818181818, 0.07196969696969698, 0.06818181818181818, 0.06818181818181818, 0.07196969696969698, 0.06818181818181818, 0.07196969696969698, 0.07575757575757576, 0.07196969696969698, 0.07575757575757576, 0.07954545454545454, 0.07575757575757576, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.07954545454545454, 0.08333333333333333, 0.08712121212121213, 0.09090909090909091, 0.08712121212121213, 0.0946969696969697, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.12878787878787878, 0.125, 0.12121212121212122, 0.12121212121212122, 0.13257575757575757, 0.1553030303030303, 0.19318181818181818, 0.1553030303030303, 0.1590909090909091, 0.1590909090909091, 0.125, 0.11742424242424243, 0.11742424242424243, 0.11363636363636363, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10984848484848485, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.10984848484848485, 0.12121212121212122, 0.13257575757575757, 0.13636363636363635, 0.14015151515151514, 0.14015151515151514, 0.14393939393939395, 0.14393939393939395, 0.14393939393939395, 0.14772727272727273, 0.14772727272727273, 0.14772727272727273, 0.1590909090909091, 0.16287878787878787, 0.16287878787878787, 0.16287878787878787, 0.20075757575757575, 0.22727272727272727, 0.25757575757575757, 0.2727272727272727, 0.29924242424242425, 0.3446969696969697, 0.4166666666666667, 0.5189393939393939, 0.7878787878787878], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ANF_receptor.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ANF_receptor", "n_seqs": 4276, "length": 488, "gap_rates": [0.8166510757717493, 0.6461646398503275, 0.5161365762394762, 0.4471468662301216, 0.40177736202058, 0.3844714686623012, 0.3685687558465856, 0.3615528531337699, 0.35547240411599623, 0.35640785781103834, 0.3540692235734331, 0.3498596819457437, 0.34822263797942, 0.3498596819457437, 0.3479887745556595, 0.4342843779232928, 0.3697380729653882, 0.3648269410664172, 0.3423760523854069, 0.3437792329279701, 0.35968194574368567, 0.3437792329279701, 0.3222637979420019, 0.31735266604303086, 0.31641721234798875, 0.31127221702525726, 0.3098690364826941, 0.3058933582787652, 0.9127689429373246, 0.8858746492048644, 0.30144995322731527, 0.3009822263797942, 0.2977081384471469, 0.29256314312441534, 0.2902245088868101, 0.30121608980355474, 0.2909260991580917, 0.2876520112254443, 0.2832086061739944, 0.2778297474275023, 0.27502338634237605, 0.27268475210477083, 0.2635640785781104, 0.25654817586529466, 0.2537418147801684, 0.2507015902712816, 0.24789522918615528, 0.2460243217960711, 0.2432179607109448, 0.2404115996258185, 0.8082319925163705, 0.3540692235734331, 0.6192703461178671, 0.6555191768007483, 0.676800748362956, 0.6868568755846586, 0.695509822263798, 0.7015902712815716, 0.7537418147801683, 0.8790926099158092, 0.9080916744621141, 0.9251637043966323, 0.9354536950420954, 0.9429373246024322, 0.9298409728718429, 0.9158091674462114, 0.8996725912067353, 0.8615528531337698, 0.711178671655753, 0.6978484565014031, 0.6924695977549111, 0.6826473339569691, 0.6688493919550982, 0.6447614593077643, 0.5958840037418148, 0.22988774555659494, 0.22637979420018708, 0.22310570626753976, 0.22029934518241348, 0.21913002806361084, 0.2177268475210477, 0.21725912067352665, 0.21608980355472404, 0.21398503274087932, 0.21117867165575305, 0.23877455565949485, 0.23105706267539758, 0.20650140318054255, 0.20416276894293733, 0.19761459307764265, 0.19738072965388212, 0.19527595884003743, 0.19270346117867165, 0.18826005612722171, 0.1873246024321796, 0.186155285313377, 0.18849391955098221, 0.1854536950420954, 0.18194574368568756, 0.18194574368568756, 0.18381665107577175, 0.1772684752104771, 0.17282507015902712, 0.20673526660430308, 0.2266136576239476, 0.2411131898971001, 0.2343311506080449, 0.24134705332086062, 0.2184284377923293, 0.20065481758652948, 0.19738072965388212, 0.8882132834424696, 0.19153414405986904, 0.18638914873713752, 0.18638914873713752, 0.21538821328344246, 0.19457436856875585, 0.191066417212348, 0.33652946679139384, 0.20813844714686622, 0.20322731524789522, 0.1854536950420954, 0.9331150608044901, 0.16393826005612722, 0.16323666978484566, 0.1618334892422825, 0.16089803554724041, 0.16043030869971936, 0.16043030869971936, 0.2266136576239476, 0.21679139382600562, 0.21351730589335827, 0.15902712815715622, 0.15739008419083256, 0.1557530402245089, 0.15458372310570626, 0.15177736202057998, 0.15130963517305893, 0.1510757717492984, 0.15037418147801684, 0.1499064546304958, 0.15060804490177737, 0.1492048643592142, 0.14710009354536951, 0.14756782039289054, 0.14826941066417212, 0.1492048643592142, 0.1508419083255379, 0.15060804490177737, 0.15130963517305893, 0.15037418147801684, 0.15037418147801684, 0.1520112254443405, 0.15341440598690365, 0.15481758652946678, 0.1569223573433115, 0.9403648269410664, 0.9118334892422825, 0.2871842843779233, 0.18358278765201122, 0.17563143124415342, 0.17797006548175864, 0.17680074836295603, 0.17820392890551917, 0.17797006548175864, 0.17773620205799812, 0.17773620205799812, 0.17750233863423762, 0.18007483629560336, 0.1796071094480823, 0.9335827876520112, 0.9197848456501403, 0.19246959775491113, 0.18872778297474274, 0.18662301216089802, 0.18662301216089802, 0.19480823199251637, 0.1891955098222638, 0.936155285313377, 0.1922357343311506, 0.18685687558465855, 0.18451824134705333, 0.18709073900841908, 0.20837231057062675, 0.20205799812909261, 0.19574368568755846, 0.1922357343311506, 0.1962114125350795, 0.19550982226379796, 0.5507483629560337, 0.7448550046772685, 0.8823666978484564, 0.9478484565014031, 0.9155753040224509, 0.7841440598690365, 0.6849859681945744, 0.44363891487371376, 0.36576239476145933, 0.33278765201122545, 0.2666043030869972, 0.25, 0.21304957904583724, 0.1969130028063611, 0.19761459307764265, 0.19738072965388212, 0.19855004677268476, 0.19550982226379796, 0.2315247895229186, 0.4106641721234799, 0.3854069223573433, 0.36131898971000936, 0.20743685687558466, 0.19831618334892423, 0.8999064546304958, 0.5860617399438728, 0.19550982226379796, 0.210710944808232, 0.19387277829747426, 0.1891955098222638, 0.18685687558465855, 0.18568755846585594, 0.18592142188961647, 0.1873246024321796, 0.18896164639850327, 0.18989710009354538, 0.20626753975678203, 0.8966323666978484, 0.2018241347053321, 0.19550982226379796, 0.19130028063610852, 0.19059869036482693, 0.20673526660430308, 0.1969130028063611, 0.1941066417212348, 0.19270346117867165, 0.19059869036482693, 0.18826005612722171, 0.18942937324602432, 0.191066417212348, 0.18989710009354538, 0.18942937324602432, 0.1891955098222638, 0.1903648269410664, 0.205799812909261, 0.9480823199251637, 0.40341440598690365, 0.4639850327408793, 0.22497661365762395, 0.20042095416276895, 0.19550982226379796, 0.19270346117867165, 0.8912535079513564, 0.896398503274088, 0.9232927970065482, 0.9275023386342376, 0.9328811973807296, 0.9457436856875585, 0.9398971000935453, 0.9305425631431244, 0.9251637043966323, 0.9050514499532273, 0.8926566884939195, 0.8882132834424696, 0.353133769878391, 0.41510757717492985, 0.40177736202058, 0.38119738072965387, 0.3479887745556595, 0.2993451824134705, 0.2883536014967259, 0.28344246959775493, 0.27876520112254444, 0.2792329279700655, 0.279466791393826, 0.2792329279700655, 0.3075304022450889, 0.3196913002806361, 0.43732460243217963, 0.828578110383536, 0.8863423760523854, 0.9190832553788587, 0.9298409728718429, 0.9048175865294668, 0.8645930776426567, 0.7492984097287184, 0.632132834424696, 0.671889616463985, 0.3400374181478017, 0.32974742750233865, 0.3091674462114125, 0.2502338634237605, 0.8954630495790459, 0.9338166510757717, 0.9462114125350796, 0.9080916744621141, 0.8783910196445276, 0.2373713751169317, 0.23199251637043966, 0.22801683816651075, 0.22871842843779233, 0.23386342376052385, 0.23105706267539758, 0.22825070159027128, 0.22871842843779233, 0.2380729653882133, 0.9398971000935453, 0.9202525724976613, 0.2747895229186155, 0.2507015902712816, 0.2469597754911132, 0.24532273152478953, 0.24087932647333957, 0.2373713751169317, 0.23783910196445276, 0.23877455565949485, 0.24064546304957904, 0.23971000935453696, 0.23994387277829748, 0.2411131898971001, 0.5177736202057999, 0.6190364826941066, 0.6356407857811038, 0.647801683816651, 0.6599625818521984, 0.6676800748362957, 0.6751637043966323, 0.6784377923292797, 0.6833489242282507, 0.6877923292797007, 0.691534144059869, 0.6973807296538821, 0.7043966323666978, 0.7146866230121609, 0.7263797942001871, 0.7425163704396632, 0.7556127221702525, 0.7752572497661365, 0.7963049579045838, 0.8295135640785781, 0.8718428437792329, 0.9137043966323667, 0.9396632366697848, 0.9476145930776426, 0.9300748362956034, 0.89733395696913, 0.8484565014031805, 0.8152478952291862, 0.7909260991580916, 0.7644995322731525, 0.7481290926099158, 0.7364359214218896, 0.7191300280636108, 0.7090739008419084, 0.6999532273152479, 0.6943405051449953, 0.6891955098222639, 0.6870907390084191, 0.6819457436856876, 0.676800748362956, 0.6711880261927035, 0.6641721234798877, 0.6524789522918616, 0.6405519176800748, 0.6300280636108513, 0.5965855940130963, 0.3982694106641721, 0.45182413470533206, 0.39967259120673526, 0.37979420018709076, 0.3589803554724041, 0.4099625818521983, 0.41323666978484563, 0.45182413470533206, 0.3510289990645463, 0.32483629560336763, 0.3269410664172123, 0.29911131898971, 0.2815715622076707, 0.2752572497661366, 0.264733395696913, 0.2640318054256314, 0.2609915809167446, 0.26800748362956034, 0.3302151543498597, 0.9305425631431244, 0.9473807296538821, 0.9137043966323667, 0.387511693171188, 0.26262862488306826, 0.323199251637044, 0.30799812909260993, 0.3023854069223573, 0.509822263797942, 0.49368568755846587, 0.5963517305893359, 0.23246024321796072, 0.2273152478952292, 0.22591206735266603, 0.22567820392890553, 0.22801683816651075, 0.2273152478952292, 0.22708138447146867, 0.2273152478952292, 0.2266136576239476, 0.22754911131898972, 0.22778297474275022, 0.22778297474275022, 0.2291861552853134, 0.23175865294667913, 0.23479887745556596, 0.3863423760523854, 0.4148737137511693, 0.4256314312441534, 0.6920018709073901, 0.7972404115996258, 0.8355940130963517, 0.8854069223573433, 0.9148737137511693, 0.9246959775491114, 0.9317118802619271, 0.9216557530402245, 0.9078578110383536, 0.8500935453695042, 0.8227315247895229, 0.724508886810103, 0.6265201122544434, 0.44270346117867165, 0.4628157156220767, 0.44855004677268473, 0.43872778297474274, 0.4922825070159027, 0.465622076707203, 0.4246959775491113, 0.411599625818522, 0.3893826005612722, 0.3606173994387278, 0.37020579981290924, 0.31267539756782037, 0.8552385406922357, 0.9275023386342376, 0.9069223573433115, 0.789756782039289, 0.289289055191768, 0.27970065481758655, 0.274555659494855, 0.27268475210477083, 0.2715154349859682, 0.27268475210477083, 0.274555659494855, 0.2724508886810103, 0.2731524789522919, 0.45743685687558466, 0.2813376987839102, 0.2801683816651076, 0.2890551917680075, 0.279466791393826, 0.2785313376987839, 0.2782974742750234, 0.2799345182413471, 0.28086997193638913, 0.30191768007483627, 0.3000467726847521, 0.293732460243218, 0.2906922357343312, 0.2913938260056127, 0.7308231992516371, 0.2939663236669785, 0.2951356407857811, 0.2963049579045837, 0.38657623947614594, 0.304022450888681, 0.3049579045837231, 0.3075304022450889, 0.3101028999064546, 0.3131431244153414, 0.31594948550046775, 0.7378391019644528, 0.32179607109448083, 0.32413470533208605, 0.32787652011225443, 0.33652946679139384, 0.3437792329279701, 0.35664172123479887, 0.38423760523854067, 0.41510757717492985, 0.4855004677268475, 0.6057062675397568, 0.7556127221702525], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ANTAR.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ANTAR", "n_seqs": 1458, "length": 54, "gap_rates": [0.8209876543209876, 0.35459533607681754, 0.20233196159122085, 0.13786008230452676, 0.1056241426611797, 0.0877914951989026, 0.06858710562414266, 0.04252400548696845, 0.024691358024691357, 0.0205761316872428, 0.013717421124828532, 0.008916323731138546, 0.0054869684499314125, 0.00411522633744856, 0.003429355281207133, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0013717421124828531, 0.0, 0.0, 0.00411522633744856, 0.006172839506172839, 0.0, 0.0013717421124828531, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.0006858710562414266, 0.00205761316872428, 0.0027434842249657062, 0.004801097393689987, 0.0054869684499314125, 0.009602194787379973, 0.02263374485596708, 0.043209876543209874, 0.1419753086419753], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ANTH.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ANTH", "n_seqs": 1055, "length": 319, "gap_rates": [0.6606635071090048, 0.3924170616113744, 0.3109004739336493, 0.2729857819905213, 0.25308056872037915, 0.24265402843601896, 0.23317535545023696, 0.23127962085308057, 0.23127962085308057, 0.23127962085308057, 0.23033175355450236, 0.23033175355450236, 0.8947867298578199, 0.22654028436018958, 0.22369668246445498, 0.22085308056872038, 0.22180094786729856, 0.21800947867298578, 0.21137440758293838, 0.2104265402843602, 0.209478672985782, 0.209478672985782, 0.209478672985782, 0.2018957345971564, 0.1971563981042654, 0.1895734597156398, 0.18862559241706162, 0.1895734597156398, 0.18862559241706162, 0.18862559241706162, 0.18578199052132702, 0.18388625592417063, 0.8218009478672986, 0.8398104265402844, 0.5071090047393365, 0.3933649289099526, 0.18578199052132702, 0.1848341232227488, 0.18104265402843603, 0.1791469194312796, 0.17725118483412322, 0.1734597156398104, 0.17251184834123223, 0.17440758293838862, 0.17251184834123223, 0.16777251184834124, 0.16682464454976303, 0.16872037914691942, 0.16398104265402844, 0.16682464454976303, 0.16303317535545023, 0.16113744075829384, 0.16303317535545023, 0.4199052132701422, 0.15924170616113745, 0.15734597156398103, 0.15639810426540285, 0.15450236966824646, 0.15545023696682464, 0.15450236966824646, 0.15355450236966825, 0.15260663507109004, 0.15260663507109004, 0.14976303317535544, 0.15071090047393365, 0.15071090047393365, 0.15071090047393365, 0.15071090047393365, 0.14786729857819905, 0.14786729857819905, 0.14691943127962084, 0.14691943127962084, 0.14786729857819905, 0.14881516587677726, 0.14976303317535544, 0.14786729857819905, 0.14691943127962084, 0.15071090047393365, 0.1895734597156398, 0.15639810426540285, 0.15734597156398103, 0.16018957345971563, 0.16018957345971563, 0.16018957345971563, 0.16208530805687205, 0.16587677725118483, 0.22843601895734597, 0.1990521327014218, 0.18862559241706162, 0.16966824644549763, 0.16018957345971563, 0.16398104265402844, 0.16018957345971563, 0.16208530805687205, 0.16303317535545023, 0.16492890995260664, 0.6199052132701421, 0.9440758293838862, 0.6587677725118484, 0.6161137440758294, 0.6028436018957346, 0.46255924170616114, 0.3251184834123223, 0.23791469194312795, 0.2132701421800948, 0.15924170616113745, 0.15734597156398103, 0.15450236966824646, 0.14691943127962084, 0.14502369668246445, 0.14407582938388624, 0.14218009478672985, 0.14028436018957346, 0.14028436018957346, 0.15734597156398103, 0.14407582938388624, 0.14502369668246445, 0.14597156398104266, 0.14691943127962084, 0.14597156398104266, 0.14407582938388624, 0.14786729857819905, 0.14786729857819905, 0.14691943127962084, 0.14691943127962084, 0.14786729857819905, 0.15260663507109004, 0.15355450236966825, 0.15639810426540285, 0.15545023696682464, 0.15450236966824646, 0.15734597156398103, 0.15734597156398103, 0.6123222748815166, 0.9241706161137441, 0.9355450236966825, 0.9478672985781991, 0.9308056872037914, 0.9118483412322275, 0.5137440758293839, 0.5364928909952607, 0.23033175355450236, 0.21706161137440758, 0.2037914691943128, 0.2, 0.2, 0.2123222748815166, 0.1876777251184834, 0.8710900473933649, 0.8843601895734597, 0.9014218009478673, 0.9080568720379147, 0.9175355450236967, 0.9251184834123223, 0.9298578199052133, 0.9317535545023696, 0.9355450236966825, 0.9412322274881516, 0.9450236966824644, 0.9469194312796209, 0.9497630331753555, 0.9459715639810427, 0.943127962085308, 0.9383886255924171, 0.9327014218009478, 0.9308056872037914, 0.9298578199052133, 0.9203791469194312, 0.9109004739336493, 0.9033175355450237, 0.8909952606635071, 0.8777251184834123, 0.8398104265402844, 0.38957345971563984, 0.5781990521327014, 0.5364928909952607, 0.5165876777251185, 0.4786729857819905, 0.35165876777251187, 0.33649289099526064, 0.3014218009478673, 0.24928909952606634, 0.2682464454976303, 0.3071090047393365, 0.6890995260663507, 0.9374407582938389, 0.8530805687203792, 0.604739336492891, 0.43412322274881515, 0.16113744075829384, 0.15260663507109004, 0.14976303317535544, 0.14597156398104266, 0.14312796208530806, 0.14218009478672985, 0.14123222748815165, 0.14123222748815165, 0.14218009478672985, 0.14218009478672985, 0.14312796208530806, 0.14123222748815165, 0.14123222748815165, 0.14028436018957346, 0.13838862559241707, 0.13933649289099526, 0.14218009478672985, 0.14218009478672985, 0.14218009478672985, 0.14123222748815165, 0.14218009478672985, 0.14407582938388624, 0.14407582938388624, 0.3109004739336493, 0.2682464454976303, 0.26540284360189575, 0.26255924170616113, 0.2616113744075829, 0.15260663507109004, 0.14691943127962084, 0.14597156398104266, 0.14786729857819905, 0.8796208530805687, 0.14502369668246445, 0.14502369668246445, 0.14407582938388624, 0.14407582938388624, 0.14407582938388624, 0.14312796208530806, 0.14502369668246445, 0.14502369668246445, 0.14502369668246445, 0.14502369668246445, 0.14407582938388624, 0.14312796208530806, 0.14312796208530806, 0.14312796208530806, 0.14312796208530806, 0.14312796208530806, 0.14407582938388624, 0.14407582938388624, 0.14502369668246445, 0.14502369668246445, 0.14502369668246445, 0.14502369668246445, 0.14597156398104266, 0.14597156398104266, 0.14786729857819905, 0.14881516587677726, 0.14881516587677726, 0.14786729857819905, 0.14881516587677726, 0.14786729857819905, 0.15734597156398103, 0.15450236966824646, 0.15355450236966825, 0.15355450236966825, 0.15450236966824646, 0.35450236966824644, 0.37725118483412323, 0.376303317535545, 0.3753554502369668, 0.36777251184834125, 0.26919431279620853, 0.15165876777251186, 0.15071090047393365, 0.15165876777251186, 0.14881516587677726, 0.14881516587677726, 0.14881516587677726, 0.14881516587677726, 0.14881516587677726, 0.14881516587677726, 0.14786729857819905, 0.15165876777251186, 0.15165876777251186, 0.14881516587677726, 0.14881516587677726, 0.15355450236966825, 0.15450236966824646, 0.15734597156398103, 0.16113744075829384, 0.16208530805687205, 0.16303317535545023, 0.16303317535545023, 0.16682464454976303, 0.16682464454976303, 0.16872037914691942, 0.17061611374407584, 0.17535545023696683, 0.176303317535545, 0.17819905213270143, 0.18009478672985782, 0.18009478672985782, 0.195260663507109, 0.1962085308056872, 0.195260663507109, 0.2985781990521327, 0.7582938388625592, 0.18862559241706162, 0.1876777251184834, 0.18672985781990523, 0.1876777251184834, 0.1895734597156398, 0.1943127962085308, 0.2066350710900474, 0.209478672985782, 0.2104265402843602, 0.2123222748815166, 0.21706161137440758, 0.22464454976303316, 0.23222748815165878, 0.25213270142180094, 0.2720379146919431, 0.2824644549763033, 0.32796208530805687, 0.409478672985782, 0.45308056872037916, 0.5289099526066351, 0.7004739336492891], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AP3B1_C.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AP3B1_C", "n_seqs": 124, "length": 157, "gap_rates": [0.8306451612903226, 0.6290322580645161, 0.5080645161290323, 0.47580645161290325, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.46774193548387094, 0.4596774193548387, 0.4274193548387097, 0.4274193548387097, 0.782258064516129, 0.4596774193548387, 0.41935483870967744, 0.3951612903225806, 0.3951612903225806, 0.3951612903225806, 0.3951612903225806, 0.4032258064516129, 0.3951612903225806, 0.3951612903225806, 0.8951612903225806, 0.9354838709677419, 0.9193548387096774, 0.8790322580645161, 0.6451612903225806, 0.4435483870967742, 0.3790322580645161, 0.3709677419354839, 0.3709677419354839, 0.3870967741935484, 0.3870967741935484, 0.3790322580645161, 0.3790322580645161, 0.3629032258064516, 0.3548387096774194, 0.3790322580645161, 0.3790322580645161, 0.4274193548387097, 0.4274193548387097, 0.4435483870967742, 0.43548387096774194, 0.43548387096774194, 0.5, 0.9354838709677419, 0.3951612903225806, 0.3467741935483871, 0.3064516129032258, 0.27419354838709675, 0.21774193548387097, 0.20161290322580644, 0.9435483870967742, 0.1693548387096774, 0.1693548387096774, 0.1774193548387097, 0.12903225806451613, 0.14516129032258066, 0.1935483870967742, 0.06451612903225806, 0.056451612903225805, 0.04032258064516129, 0.03225806451612903, 0.04032258064516129, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.9274193548387096, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.008064516129032258, 0.008064516129032258, 0.024193548387096774, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0967741935483871, 0.20967741935483872, 0.1532258064516129, 0.13709677419354838, 0.12096774193548387, 0.9354838709677419, 0.16129032258064516, 0.1532258064516129, 0.1532258064516129, 0.16129032258064516, 0.1693548387096774, 0.1693548387096774, 0.1774193548387097, 0.1935483870967742, 0.1935483870967742, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20161290322580644, 0.20967741935483872, 0.20967741935483872, 0.20967741935483872, 0.20967741935483872, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.25, 0.2903225806451613, 0.29838709677419356, 0.3951612903225806, 0.3951612903225806], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/APOBEC_N.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "APOBEC_N", "n_seqs": 123, "length": 241, "gap_rates": [0.6178861788617886, 0.5447154471544715, 0.45528455284552843, 0.3983739837398374, 0.3902439024390244, 0.37398373983739835, 0.37398373983739835, 0.36585365853658536, 0.45528455284552843, 0.3089430894308943, 0.2926829268292683, 0.2845528455284553, 0.2764227642276423, 0.21138211382113822, 0.1951219512195122, 0.18699186991869918, 0.18699186991869918, 0.1951219512195122, 0.7560975609756098, 0.7398373983739838, 0.17073170731707318, 0.16260162601626016, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.17886178861788618, 0.16260162601626016, 0.16260162601626016, 0.16260162601626016, 0.2032520325203252, 0.3821138211382114, 0.42276422764227645, 0.43902439024390244, 0.943089430894309, 0.943089430894309, 0.17073170731707318, 0.18699186991869918, 0.17886178861788618, 0.2032520325203252, 0.3983739837398374, 0.3170731707317073, 0.2032520325203252, 0.16260162601626016, 0.16260162601626016, 0.18699186991869918, 0.056910569105691054, 0.6910569105691057, 0.7560975609756098, 0.9105691056910569, 0.9349593495934959, 0.8861788617886179, 0.7479674796747967, 0.4878048780487805, 0.04065040650406504, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.06504065040650407, 0.06504065040650407, 0.18699186991869918, 0.21138211382113822, 0.7235772357723578, 0.12195121951219512, 0.12195121951219512, 0.08943089430894309, 0.5365853658536586, 0.8943089430894309, 0.8048780487804879, 0.08943089430894309, 0.926829268292683, 0.926829268292683, 0.926829268292683, 0.943089430894309, 0.926829268292683, 0.926829268292683, 0.926829268292683, 0.07317073170731707, 0.07317073170731707, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.6178861788617886, 0.6178861788617886, 0.6178861788617886, 0.6178861788617886, 0.7398373983739838, 0.7398373983739838, 0.7398373983739838, 0.7560975609756098, 0.7804878048780488, 0.7886178861788617, 0.7886178861788617, 0.7886178861788617, 0.7804878048780488, 0.7642276422764228, 0.7560975609756098, 0.7398373983739838, 0.7398373983739838, 0.7398373983739838, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.7560975609756098, 0.8048780487804879, 0.7560975609756098, 0.7398373983739838, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.5203252032520326, 0.7886178861788617, 0.8699186991869918, 0.8861788617886179, 0.8861788617886179, 0.9105691056910569, 0.9105691056910569, 0.926829268292683, 0.926829268292683, 0.9186991869918699, 0.9105691056910569, 0.9105691056910569, 0.8861788617886179, 0.8699186991869918, 0.8048780487804879, 0.7886178861788617, 0.04065040650406504, 0.3252032520325203, 0.14634146341463414, 0.08943089430894309, 0.14634146341463414, 0.08943089430894309, 0.11382113821138211, 0.04065040650406504, 0.04065040650406504, 0.3008130081300813, 0.2764227642276423, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.8699186991869918, 0.8130081300813008, 0.016260162601626018, 0.024390243902439025, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04878048780487805, 0.07317073170731707, 0.08943089430894309, 0.12195121951219512, 0.13008130081300814, 0.13821138211382114, 0.16260162601626016, 0.9024390243902439, 0.9024390243902439, 0.14634146341463414, 0.15447154471544716, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.21138211382113822, 0.7723577235772358, 0.8617886178861789, 0.8943089430894309, 0.943089430894309, 0.943089430894309, 0.8861788617886179, 0.7967479674796748, 0.7560975609756098, 0.22764227642276422, 0.2601626016260163, 0.25203252032520324, 0.2601626016260163, 0.2926829268292683, 0.3008130081300813, 0.3170731707317073, 0.3170731707317073, 0.3170731707317073, 0.3333333333333333, 0.3333333333333333, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.36585365853658536, 0.36585365853658536, 0.37398373983739835, 0.37398373983739835, 0.3983739837398374, 0.3983739837398374, 0.4146341463414634, 0.5121951219512195, 0.5609756097560976, 0.8780487804878049], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/APO_RNA-bind.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "APO_RNA-bind", "n_seqs": 249, "length": 202, "gap_rates": [0.8755020080321285, 0.8554216867469879, 0.8313253012048193, 0.7951807228915663, 0.7831325301204819, 0.7751004016064257, 0.7469879518072289, 0.7228915662650602, 0.7028112449799196, 0.6867469879518072, 0.6706827309236948, 0.6666666666666666, 0.6666666666666666, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6586345381526104, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6465863453815262, 0.6465863453815262, 0.6465863453815262, 0.6465863453815262, 0.642570281124498, 0.642570281124498, 0.6305220883534136, 0.5983935742971888, 0.5823293172690763, 0.5662650602409639, 0.5582329317269076, 0.5542168674698795, 0.5542168674698795, 0.5502008032128514, 0.5582329317269076, 0.5662650602409639, 0.5662650602409639, 0.5381526104417671, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.5261044176706827, 0.9116465863453815, 0.5220883534136547, 0.5220883534136547, 0.5180722891566265, 0.5180722891566265, 0.5140562248995983, 0.4979919678714859, 0.4979919678714859, 0.4899598393574297, 0.44176706827309237, 0.3534136546184739, 0.321285140562249, 0.3092369477911647, 0.2570281124497992, 0.12048192771084337, 0.10040160642570281, 0.0963855421686747, 0.07228915662650602, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.07228915662650602, 0.07228915662650602, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.0642570281124498, 0.0642570281124498, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.05220883534136546, 0.05220883534136546, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.040160642570281124, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.03614457831325301, 0.0321285140562249, 0.040160642570281124, 0.04417670682730924, 0.04819277108433735, 0.060240963855421686, 0.0321285140562249, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.028112449799196786, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.0321285140562249, 0.04819277108433735, 0.03614457831325301, 0.0321285140562249, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.040160642570281124, 0.04417670682730924, 0.04417670682730924, 0.04819277108433735, 0.05622489959839357, 0.06827309236947791, 0.06827309236947791, 0.060240963855421686, 0.04417670682730924, 0.9397590361445783, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.04417670682730924, 0.0642570281124498, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.05220883534136546, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05220883534136546, 0.060240963855421686, 0.08032128514056225, 0.08433734939759036, 0.10843373493975904, 0.9357429718875502, 0.21285140562248997, 0.9156626506024096, 0.39759036144578314, 0.4497991967871486, 0.5060240963855421, 0.5582329317269076, 0.5622489959839357, 0.5863453815261044, 0.6104417670682731, 0.6345381526104418, 0.6385542168674698, 0.6385542168674698, 0.6385542168674698, 0.642570281124498, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.6506024096385542, 0.891566265060241, 0.6506024096385542, 0.6546184738955824, 0.6706827309236948], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ARPC4.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ARPC4", "n_seqs": 306, "length": 168, "gap_rates": [0.3627450980392157, 0.2549019607843137, 0.19607843137254902, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.1568627450980392, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.1111111111111111, 0.1111111111111111, 0.11437908496732026, 0.9379084967320261, 0.11437908496732026, 0.11437908496732026, 0.1111111111111111, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10457516339869281, 0.10130718954248366, 0.10457516339869281, 0.10457516339869281, 0.09477124183006536, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.0915032679738562, 0.0915032679738562, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08496732026143791, 0.08496732026143791, 0.08496732026143791, 0.08496732026143791, 0.08169934640522876, 0.08169934640522876, 0.08169934640522876, 0.0784313725490196, 0.07516339869281045, 0.07516339869281045, 0.0718954248366013, 0.06862745098039216, 0.06862745098039216, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.0718954248366013, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06535947712418301, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05228758169934641, 0.049019607843137254, 0.05555555555555555, 0.06535947712418301, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.06535947712418301, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.058823529411764705, 0.058823529411764705, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.06209150326797386, 0.06535947712418301, 0.06535947712418301, 0.06862745098039216, 0.0718954248366013, 0.07516339869281045, 0.0718954248366013, 0.07516339869281045, 0.07516339869281045, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.10130718954248366, 0.10457516339869281, 0.10784313725490197, 0.10784313725490197, 0.11764705882352941, 0.12091503267973856, 0.12091503267973856, 0.13398692810457516, 0.21568627450980393, 0.9084967320261438], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ASL_C.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ASL_C", "n_seqs": 782, "length": 123, "gap_rates": [0.02557544757033248, 0.016624040920716114, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.015345268542199489, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.016624040920716114, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.011508951406649617, 0.011508951406649617, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.8797953964194374, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.01278772378516624, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.015345268542199489, 0.015345268542199489, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.014066496163682864, 0.7455242966751918, 0.014066496163682864, 0.016624040920716114, 0.017902813299232736, 0.017902813299232736, 0.017902813299232736, 0.01918158567774936, 0.01918158567774936, 0.020460358056265986, 0.020460358056265986, 0.020460358056265986, 0.01918158567774936, 0.020460358056265986, 0.024296675191815855, 0.029411764705882353, 0.0370843989769821, 0.9462915601023018, 0.04092071611253197, 0.04219948849104859, 0.04219948849104859, 0.03964194373401535, 0.04219948849104859, 0.04219948849104859, 0.043478260869565216, 0.04219948849104859, 0.04219948849104859, 0.04475703324808184, 0.04731457800511509, 0.04859335038363171, 0.054987212276214836, 0.06010230179028133, 0.0639386189258312, 0.06521739130434782, 0.06649616368286446, 0.0907928388746803], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ATC_hydrolase.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ATC_hydrolase", "n_seqs": 329, "length": 174, "gap_rates": [0.6960486322188449, 0.6048632218844985, 0.5440729483282675, 0.46504559270516715, 0.3860182370820669, 0.303951367781155, 0.2674772036474164, 0.24620060790273557, 0.7933130699088146, 0.7537993920972644, 0.2006079027355623, 0.19148936170212766, 0.1702127659574468, 0.1702127659574468, 0.1702127659574468, 0.16717325227963525, 0.16717325227963525, 0.16717325227963525, 0.16717325227963525, 0.1641337386018237, 0.2066869300911854, 0.9270516717325228, 0.7507598784194529, 0.22492401215805471, 0.2066869300911854, 0.1580547112462006, 0.15501519756838905, 0.1580547112462006, 0.13677811550151975, 0.12462006079027356, 0.12462006079027356, 0.12158054711246201, 0.12158054711246201, 0.12462006079027356, 0.12462006079027356, 0.12462006079027356, 0.9179331306990881, 0.9300911854103343, 0.9331306990881459, 0.9270516717325228, 0.8753799392097265, 0.19756838905775076, 0.2006079027355623, 0.1580547112462006, 0.1580547112462006, 0.9057750759878419, 0.14893617021276595, 0.14285714285714285, 0.13677811550151975, 0.13677811550151975, 0.1276595744680851, 0.12158054711246201, 0.12158054711246201, 0.1094224924012158, 0.1094224924012158, 0.1033434650455927, 0.1094224924012158, 0.1276595744680851, 0.547112462006079, 0.47720364741641336, 0.425531914893617, 0.3343465045592705, 0.23404255319148937, 0.21580547112462006, 0.1884498480243161, 0.11246200607902736, 0.0972644376899696, 0.08206686930091185, 0.08206686930091185, 0.09422492401215805, 0.0851063829787234, 0.11246200607902736, 0.3525835866261398, 0.8145896656534954, 0.8844984802431611, 0.8571428571428571, 0.7477203647416414, 0.3252279635258359, 0.3100303951367781, 0.2674772036474164, 0.25835866261398177, 0.3221884498480243, 0.17933130699088146, 0.5653495440729484, 0.7750759878419453, 0.8480243161094225, 0.8966565349544073, 0.8237082066869301, 0.662613981762918, 0.5197568389057751, 0.2188449848024316, 0.1884498480243161, 0.15501519756838905, 0.14285714285714285, 0.10638297872340426, 0.10030395136778116, 0.9331306990881459, 0.9118541033434651, 0.0243161094224924, 0.015197568389057751, 0.015197568389057751, 0.02127659574468085, 0.02735562310030395, 0.6382978723404256, 0.04559270516717325, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.8389057750759878, 0.015197568389057751, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.8389057750759878, 0.00303951367781155, 0.8844984802431611, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.00303951367781155, 0.0060790273556231, 0.0060790273556231, 0.057750759878419454, 0.02735562310030395, 0.1094224924012158, 0.8297872340425532, 0.9179331306990881, 0.8145896656534954, 0.3161094224924012, 0.2765957446808511, 0.0121580547112462, 0.00911854103343465, 0.0364741641337386, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.0182370820668693, 0.0182370820668693, 0.0243161094224924, 0.030395136778115502, 0.03343465045592705, 0.0729483282674772, 0.0364741641337386, 0.05167173252279635, 0.08814589665653495, 0.23100303951367782, 0.3677811550151976], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ATP_transf.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ATP_transf", "n_seqs": 252, "length": 77, "gap_rates": [0.11904761904761904, 0.023809523809523808, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023809523809523808, 0.023809523809523808, 0.011904761904761904, 0.027777777777777776, 0.031746031746031744, 0.5992063492063492, 0.6150793650793651, 0.7301587301587301, 0.7619047619047619, 0.873015873015873, 0.9246031746031746, 0.9404761904761905, 0.9365079365079365, 0.8968253968253969, 0.7777777777777778, 0.7341269841269841, 0.6468253968253969, 0.6111111111111112, 0.5357142857142857, 0.4444444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003968253968253968, 0.007936507936507936, 0.007936507936507936, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.011904761904761904, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027777777777777776, 0.031746031746031744, 0.7142857142857143, 0.051587301587301584, 0.03571428571428571, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.753968253968254, 0.04365079365079365, 0.047619047619047616, 0.047619047619047616, 0.051587301587301584, 0.05952380952380952, 0.07142857142857142, 0.18253968253968253, 0.44047619047619047], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/ATPase-cat_bd.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "ATPase-cat_bd", "n_seqs": 293, "length": 86, "gap_rates": [0.32764505119453924, 0.06825938566552901, 0.06484641638225255, 0.06484641638225255, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.08191126279863481, 0.08191126279863481, 0.20819112627986347, 0.42662116040955633, 0.40273037542662116, 0.378839590443686, 0.3651877133105802, 0.24914675767918087, 0.12627986348122866, 0.11262798634812286, 0.09897610921501707, 0.06143344709897611, 0.051194539249146756, 0.03754266211604096, 0.034129692832764506, 0.030716723549488054, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034129692832764505, 0.0034129692832764505, 0.013651877133105802, 0.017064846416382253, 0.017064846416382253, 0.020477815699658702, 0.020477815699658702, 0.09897610921501707, 0.08873720136518772, 0.08873720136518772, 0.09215017064846416, 0.06484641638225255, 0.07167235494880546, 0.08532423208191127, 0.09897610921501707, 0.20477815699658702, 0.21160409556313994, 0.24573378839590443, 0.44368600682593856, 0.89419795221843, 0.4402730375426621, 0.35494880546075086, 0.2832764505119454, 0.2593856655290102, 0.21160409556313994, 0.20819112627986347, 0.45051194539249145, 0.1945392491467577, 0.18088737201365188, 0.18088737201365188, 0.18088737201365188, 0.18088737201365188, 0.18430034129692832, 0.19112627986348124, 0.19112627986348124, 0.19795221843003413, 0.20477815699658702, 0.2150170648464164, 0.2354948805460751, 0.2354948805460751, 0.23890784982935154, 0.27303754266211605, 0.3037542662116041, 0.3583617747440273, 0.5187713310580204, 0.7303754266211604], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/AbfB.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "AbfB", "n_seqs": 240, "length": 153, "gap_rates": [0.8416666666666667, 0.5625, 0.5458333333333333, 0.5458333333333333, 0.5291666666666667, 0.5208333333333334, 0.5083333333333333, 0.4875, 0.4791666666666667, 0.4708333333333333, 0.4666666666666667, 0.4625, 0.4583333333333333, 0.4583333333333333, 0.45416666666666666, 0.45416666666666666, 0.45416666666666666, 0.7416666666666667, 0.45416666666666666, 0.45416666666666666, 0.45416666666666666, 0.44583333333333336, 0.44166666666666665, 0.44583333333333336, 0.6625, 0.6083333333333333, 0.625, 0.5916666666666667, 0.5541666666666667, 0.49166666666666664, 0.36666666666666664, 0.3541666666666667, 0.3333333333333333, 0.3125, 0.275, 0.25, 0.23333333333333334, 0.21666666666666667, 0.175, 0.14583333333333334, 0.12916666666666668, 0.125, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.11666666666666667, 0.08333333333333333, 0.9083333333333333, 0.9458333333333333, 0.8666666666666667, 0.07916666666666666, 0.07083333333333333, 0.8833333333333333, 0.95, 0.9208333333333333, 0.8375, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.0875, 0.0875, 0.041666666666666664, 0.041666666666666664, 0.0375, 0.0375, 0.041666666666666664, 0.8625, 0.041666666666666664, 0.04583333333333333, 0.04583333333333333, 0.058333333333333334, 0.0625, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.058333333333333334, 0.07083333333333333, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07083333333333333, 0.0625, 0.0625, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.05416666666666667, 0.07083333333333333, 0.1, 0.8541666666666666, 0.15, 0.2875, 0.15833333333333333, 0.12916666666666668, 0.125, 0.2833333333333333, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.1125, 0.12916666666666668, 0.12916666666666668, 0.1375, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14583333333333334, 0.14583333333333334, 0.15416666666666667, 0.15833333333333333, 0.1625, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17083333333333334, 0.18333333333333332, 0.1875, 0.20833333333333334, 0.43333333333333335, 0.725, 0.7416666666666667, 0.7291666666666666, 0.7083333333333334, 0.6375, 0.5916666666666667, 0.2833333333333333, 0.26666666666666666, 0.2625, 0.26666666666666666, 0.2791666666666667, 0.29583333333333334, 0.30833333333333335, 0.3125, 0.32083333333333336, 0.325, 0.3875, 0.6291666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/Abhydrolase_1.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "Abhydrolase_1", "n_seqs": 5000, "length": 375, "gap_rates": [0.6142, 0.2404, 0.1612, 0.1278, 0.1188, 0.114, 0.1114, 0.1094, 0.1078, 0.1062, 0.1044, 0.946, 0.9184, 0.1056, 0.105, 0.107, 0.1162, 0.9004, 0.931, 0.948, 0.94, 0.9234, 0.873, 0.1088, 0.1016, 0.0984, 0.7146, 0.6732, 0.1054, 0.091, 0.121, 0.0966, 0.0808, 0.0794, 0.1054, 0.4466, 0.841, 0.9222, 0.7764, 0.0474, 0.0428, 0.0396, 0.0388, 0.0376, 0.038, 0.0374, 0.0374, 0.0372, 0.0372, 0.037, 0.0362, 0.0356, 0.0348, 0.035, 0.046, 0.041, 0.039, 0.0372, 0.1, 0.2846, 0.618, 0.6448, 0.7818, 0.8144, 0.846, 0.8674, 0.9162, 0.9468, 0.9396, 0.911, 0.853, 0.834, 0.7956, 0.7524, 0.263, 0.2364, 0.1236, 0.9276, 0.9358, 0.9388, 0.9396, 0.9404, 0.9408, 0.9414, 0.9428, 0.944, 0.945, 0.9458, 0.9468, 0.95, 0.9478, 0.9462, 0.9454, 0.9444, 0.9432, 0.942, 0.9408, 0.9404, 0.9398, 0.939, 0.9376, 0.9306, 0.9152, 0.0568, 0.0552, 0.1142, 0.119, 0.026, 0.0228, 0.0212, 0.019, 0.0174, 0.0174, 0.9198, 0.9354, 0.878, 0.017, 0.0176, 0.948, 0.9038, 0.0162, 0.0166, 0.0162, 0.0164, 0.0168, 0.0154, 0.0136, 0.0122, 0.0114, 0.0198, 0.8498, 0.0128, 0.0118, 0.0126, 0.0118, 0.0122, 0.0122, 0.0128, 0.0134, 0.0138, 0.0146, 0.0148, 0.0158, 0.0166, 0.0176, 0.018, 0.019, 0.0224, 0.0308, 0.9122, 0.9488, 0.8518, 0.0278, 0.0286, 0.04, 0.0328, 0.033, 0.0336, 0.0348, 0.0382, 0.0418, 0.0452, 0.0484, 0.0524, 0.6514, 0.7858, 0.9206, 0.939, 0.8882, 0.7166, 0.5704, 0.42, 0.4522, 0.3786, 0.3474, 0.3412, 0.3236, 0.3134, 0.3154, 0.3206, 0.3312, 0.326, 0.335, 0.3406, 0.3476, 0.3584, 0.3668, 0.3762, 0.3828, 0.3874, 0.3944, 0.4004, 0.407, 0.4124, 0.4198, 0.424, 0.4292, 0.4358, 0.4406, 0.447, 0.451, 0.4564, 0.458, 0.4592, 0.4608, 0.4636, 0.4654, 0.4678, 0.4686, 0.4692, 0.4718, 0.4726, 0.473, 0.4738, 0.4752, 0.4766, 0.4774, 0.4806, 0.4814, 0.538, 0.5468, 0.6218, 0.679, 0.71, 0.7298, 0.734, 0.791, 0.7574, 0.816, 0.8394, 0.8638, 0.8818, 0.9004, 0.917, 0.9266, 0.9336, 0.9398, 0.9454, 0.9482, 0.943, 0.9364, 0.93, 0.9228, 0.9076, 0.892, 0.8732, 0.8548, 0.8258, 0.8002, 0.5114, 0.52, 0.5124, 0.5084, 0.5048, 0.5046, 0.5036, 0.5046, 0.5064, 0.5386, 0.526, 0.5422, 0.5176, 0.5104, 0.505, 0.4996, 0.5004, 0.4996, 0.502, 0.501, 0.5, 0.4994, 0.539, 0.5192, 0.5102, 0.5034, 0.501, 0.501, 0.4996, 0.5002, 0.5004, 0.5, 0.5002, 0.5018, 0.515, 0.5134, 0.5254, 0.5184, 0.527, 0.5268, 0.5654, 0.5644, 0.5474, 0.7658, 0.7856, 0.806, 0.8218, 0.8398, 0.8536, 0.8676, 0.885, 0.8952, 0.9096, 0.9202, 0.9324, 0.9402, 0.9494, 0.9374, 0.927, 0.9172, 0.902, 0.89, 0.8804, 0.8594, 0.8476, 0.8292, 0.8164, 0.7942, 0.7782, 0.756, 0.7368, 0.7322, 0.6846, 0.6764, 0.6434, 0.9248, 0.9416, 0.9018, 0.4882, 0.488, 0.4878, 0.488, 0.4882, 0.4892, 0.4888, 0.4938, 0.4922, 0.4906, 0.4912, 0.494, 0.4934, 0.4986, 0.5092, 0.908, 0.5012, 0.5018, 0.5024, 0.5038, 0.5062, 0.5064, 0.5114, 0.5216, 0.5144, 0.5246, 0.5222, 0.5192, 0.9412, 0.8938, 0.5892, 0.5236, 0.5226, 0.5222, 0.523, 0.5238, 0.5246, 0.5262, 0.5292, 0.5322, 0.5356, 0.553, 0.5836, 0.6248, 0.6746, 0.7246, 0.8062, 0.9306], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/Abhydrolase_3.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "Abhydrolase_3", "n_seqs": 5000, "length": 256, "gap_rates": [0.3904, 0.2372, 0.2114, 0.2012, 0.1926, 0.1582, 0.1576, 0.1558, 0.1568, 0.1562, 0.156, 0.1554, 0.1552, 0.1554, 0.1546, 0.1524, 0.1514, 0.817, 0.9454, 0.7722, 0.149, 0.1476, 0.1452, 0.147, 0.1466, 0.1626, 0.149, 0.1506, 0.1844, 0.2058, 0.1516, 0.127, 0.1238, 0.122, 0.121, 0.1198, 0.1198, 0.1188, 0.1176, 0.1168, 0.1164, 0.1158, 0.1194, 0.1166, 0.122, 0.1192, 0.1098, 0.108, 0.1098, 0.107, 0.1054, 0.1028, 0.1006, 0.1004, 0.0996, 0.0992, 0.0984, 0.0984, 0.099, 0.099, 0.0992, 0.0994, 0.1, 0.1002, 0.102, 0.3, 0.8542, 0.8882, 0.912, 0.9496, 0.921, 0.9042, 0.8758, 0.8528, 0.3204, 0.8274, 0.3102, 0.2462, 0.1848, 0.129, 0.1112, 0.104, 0.1024, 0.1008, 0.1002, 0.0982, 0.098, 0.0968, 0.0974, 0.0982, 0.0982, 0.0982, 0.0984, 0.099, 0.1002, 0.1012, 0.1018, 0.103, 0.104, 0.105, 0.1094, 0.1208, 0.1308, 0.1364, 0.1396, 0.143, 0.16, 0.3004, 0.909, 0.2802, 0.2414, 0.1754, 0.6546, 0.7318, 0.8008, 0.8356, 0.8802, 0.9402, 0.9182, 0.854, 0.8142, 0.767, 0.6916, 0.6466, 0.16, 0.16, 0.1592, 0.1594, 0.16, 0.1612, 0.1602, 0.16, 0.1596, 0.8716, 0.8998, 0.8582, 0.1688, 0.2108, 0.3098, 0.2842, 0.914, 0.9398, 0.8602, 0.6444, 0.2932, 0.2634, 0.345, 0.3076, 0.2478, 0.2428, 0.2546, 0.6562, 0.7318, 0.7006, 0.4942, 0.4272, 0.3848, 0.9024, 0.3306, 0.3004, 0.3328, 0.2974, 0.2902, 0.2906, 0.3114, 0.2944, 0.2842, 0.2758, 0.264, 0.2572, 0.2728, 0.2706, 0.2564, 0.2518, 0.2472, 0.2444, 0.2536, 0.9222, 0.2882, 0.8538, 0.9378, 0.564, 0.287, 0.275, 0.2634, 0.259, 0.2586, 0.26, 0.2552, 0.9418, 0.2562, 0.2536, 0.2522, 0.2836, 0.264, 0.2942, 0.2826, 0.9064, 0.8244, 0.4716, 0.9184, 0.2756, 0.8368, 0.9482, 0.918, 0.7832, 0.2704, 0.2716, 0.2856, 0.2634, 0.2612, 0.259, 0.2588, 0.2584, 0.2584, 0.2588, 0.2588, 0.2594, 0.2594, 0.26, 0.267, 0.2612, 0.2628, 0.2636, 0.2638, 0.2646, 0.2656, 0.2664, 0.2672, 0.2676, 0.2682, 0.2688, 0.2694, 0.2706, 0.276, 0.2876, 0.949, 0.9328, 0.2908, 0.2924, 0.297, 0.3026, 0.3106, 0.3138, 0.3168, 0.32, 0.3222, 0.3256, 0.3294, 0.336, 0.342, 0.3468, 0.3472, 0.3772, 0.4418, 0.6154], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/Abhydrolase_5.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "Abhydrolase_5", "n_seqs": 242, "length": 192, "gap_rates": [0.6818181818181818, 0.2231404958677686, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.21074380165289255, 0.2066115702479339, 0.2066115702479339, 0.2066115702479339, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.9173553719008265, 0.19834710743801653, 0.2066115702479339, 0.2024793388429752, 0.19421487603305784, 0.9421487603305785, 0.9338842975206612, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19421487603305784, 0.19008264462809918, 0.19421487603305784, 0.2024793388429752, 0.2066115702479339, 0.1859504132231405, 0.1859504132231405, 0.9380165289256198, 0.9132231404958677, 0.1859504132231405, 0.18181818181818182, 0.9173553719008265, 0.9297520661157025, 0.9090909090909091, 0.17768595041322313, 0.17355371900826447, 0.1652892561983471, 0.15289256198347106, 0.11983471074380166, 0.10330578512396695, 0.09090909090909091, 0.08677685950413223, 0.08264462809917356, 0.07024793388429752, 0.07851239669421488, 0.06198347107438017, 0.08677685950413223, 0.8760330578512396, 0.1652892561983471, 0.19008264462809918, 0.05785123966942149, 0.1115702479338843, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.012396694214876033, 0.012396694214876033, 0.008264462809917356, 0.012396694214876033, 0.9338842975206612, 0.9256198347107438, 0.02066115702479339, 0.01652892561983471, 0.8884297520661157, 0.028925619834710745, 0.6322314049586777, 0.05785123966942149, 0.7975206611570248, 0.05785123966942149, 0.03305785123966942, 0.02066115702479339, 0.012396694214876033, 0.01652892561983471, 0.012396694214876033, 0.012396694214876033, 0.02066115702479339, 0.03305785123966942, 0.02066115702479339, 0.01652892561983471, 0.024793388429752067, 0.9338842975206612, 0.5867768595041323, 0.10330578512396695, 0.04132231404958678, 0.21074380165289255, 0.05785123966942149, 0.8553719008264463, 0.05371900826446281, 0.028925619834710745, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.03305785123966942, 0.049586776859504134, 0.049586776859504134, 0.045454545454545456, 0.04132231404958678, 0.0371900826446281, 0.03305785123966942, 0.04132231404958678, 0.049586776859504134, 0.05371900826446281, 0.0743801652892562, 0.8966942148760331, 0.9049586776859504, 0.9132231404958677, 0.9173553719008265, 0.9421487603305785, 0.9173553719008265, 0.9132231404958677, 0.8966942148760331, 0.8842975206611571, 0.0743801652892562, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.08677685950413223, 0.0743801652892562, 0.0743801652892562, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.0743801652892562, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.1115702479338843, 0.21074380165289255, 0.21487603305785125, 0.2231404958677686, 0.23140495867768596, 0.9462809917355371, 0.9421487603305785, 0.24380165289256198, 0.256198347107438, 0.256198347107438, 0.256198347107438, 0.256198347107438, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.2644628099173554, 0.26859504132231404, 0.26859504132231404, 0.28512396694214875, 0.29338842975206614, 0.30165289256198347, 0.30991735537190085, 0.3305785123966942, 0.4297520661157025, 0.9256198347107438], "gap_symbol": "-", "mismatch_seqs": 0}
|
pfam_gap_rates/Acetate_kinase.gap.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"family": "Acetate_kinase", "n_seqs": 1989, "length": 398, "gap_rates": [0.6465560583207642, 0.11664152840623429, 0.09803921568627451, 0.09401709401709402, 0.09250879839115134, 0.09250879839115134, 0.09250879839115134, 0.09250879839115134, 0.09250879839115134, 0.09250879839115134, 0.09200603318250378, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.09100050276520864, 0.24937154348919055, 0.8903971845148315, 0.9406737053795877, 0.9467068878833584, 0.9286073403720463, 0.8677727501256913, 0.6837606837606838, 0.2604323780794369, 0.2368024132730015, 0.2071392659627954, 0.19205630970336854, 0.19054801407742583, 0.1885369532428356, 0.15786827551533433, 0.13122171945701358, 0.11463046757164404, 0.09954751131221719, 0.09451985922574158, 0.0930115635997989, 0.09200603318250378, 0.09502262443438914, 0.09100050276520864, 0.09100050276520864, 0.09049773755656108, 0.0930115635997989, 0.09502262443438914, 0.09803921568627451, 0.09954751131221719, 0.12468577174459528, 0.138763197586727, 0.4906988436400201, 0.29663147310206134, 0.2644544997486174, 0.25339366515837103, 0.2538964303670186, 0.298139768728004, 0.24283559577677225, 0.2197083961789844, 0.11010558069381599, 0.09803921568627451, 0.09049773755656108, 0.08396178984414278, 0.07893413775766717, 0.07692307692307693, 0.07390648567119155, 0.07440925087983911, 0.07390648567119155, 0.07390648567119155, 0.07239819004524888, 0.07139265962795374, 0.07088989441930618, 0.07088989441930618, 0.07038712921065862, 0.07038712921065862, 0.06887883358471594, 0.06887883358471594, 0.0693815987933635, 0.07038712921065862, 0.07088989441930618, 0.6797385620915033, 0.6631473102061337, 0.35545500251382606, 0.3564605329311212, 0.240824534942182, 0.11664152840623429, 0.10005027652086476, 0.09100050276520864, 0.0784313725490196, 0.06485671191553545, 0.0563097033685269, 0.05228758169934641, 0.04725992961287079, 0.04625439919557567, 0.04625439919557567, 0.04625439919557567, 0.04625439919557567, 0.0457516339869281, 0.0457516339869281, 0.04524886877828054, 0.04524886877828054, 0.04625439919557567, 0.04675716440422323, 0.05279034690799397, 0.0784313725490196, 0.059326294620412265, 0.05228758169934641, 0.048768225238813474, 0.04474610356963298, 0.04474610356963298, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.04424333836098542, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.043237807943690296, 0.042735042735042736, 0.043740573152337855, 0.04776269482151835, 0.04625439919557567, 0.043740573152337855, 0.0457516339869281, 0.042735042735042736, 0.04474610356963298, 0.043740573152337855, 0.043237807943690296, 0.04474610356963298, 0.04424333836098542, 0.04424333836098542, 0.043740573152337855, 0.04474610356963298, 0.04474610356963298, 0.04474610356963298, 0.04474610356963298, 0.04424333836098542, 0.04474610356963298, 0.04474610356963298, 0.04725992961287079, 0.04524886877828054, 0.04524886877828054, 0.05077928607340372, 0.05429864253393665, 0.04524886877828054, 0.04524886877828054, 0.0457516339869281, 0.18803418803418803, 0.1714429361488185, 0.16943187531422826, 0.04424333836098542, 0.043237807943690296, 0.043740573152337855, 0.043740573152337855, 0.04474610356963298, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043237807943690296, 0.042735042735042736, 0.042735042735042736, 0.042232277526395176, 0.04172951231774761, 0.042735042735042736, 0.043237807943690296, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.043740573152337855, 0.04524886877828054, 0.048768225238813474, 0.04776269482151835, 0.04675716440422323, 0.25289089994972347, 0.20864756158873807, 0.2629462041226747, 0.19859225741578682, 0.19557566616390146, 0.19557566616390146, 0.04725992961287079, 0.0457516339869281, 0.043237807943690296, 0.043237807943690296, 0.042232277526395176, 0.04172951231774761, 0.04172951231774761, 0.04172951231774761, 0.04122674710910005, 0.04172951231774761, 0.04172951231774761, 0.04172951231774761, 0.04072398190045249, 0.04022121669180493, 0.04022121669180493, 0.04072398190045249, 0.04072398190045249, 0.042735042735042736, 0.04524886877828054, 0.04625439919557567, 0.05279034690799397, 0.04776269482151835, 0.0563097033685269, 0.0718954248366013, 0.07692307692307693, 0.1649069884364002, 0.1035696329813977, 0.05279034690799397, 0.042232277526395176, 0.038210155857214684, 0.038210155857214684, 0.038210155857214684, 0.0392156862745098, 0.0392156862745098, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.0392156862745098, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.038210155857214684, 0.038210155857214684, 0.038210155857214684, 0.038210155857214684, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.038712921065862244, 0.04172951231774761, 0.04172951231774761, 0.04474610356963298, 0.04625439919557567, 0.04122674710910005, 0.042735042735042736, 0.18803418803418803, 0.06234288587229764, 0.03619909502262444, 0.03519356460532931, 0.03519356460532931, 0.03418803418803419, 0.03418803418803419, 0.03469079939668175, 0.03469079939668175, 0.03418803418803419, 0.033685268979386625, 0.033685268979386625, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.033182503770739065, 0.03418803418803419, 0.03469079939668175, 0.03519356460532931, 0.03569632981397687, 0.03569632981397687, 0.03569632981397687, 0.04022121669180493, 0.06686777275012569, 0.04725992961287079, 0.042232277526395176, 0.03971845148315736, 0.043237807943690296, 0.04072398190045249, 0.036701860231272, 0.03619909502262444, 0.03519356460532931, 0.03418803418803419, 0.03469079939668175, 0.03469079939668175, 0.033182503770739065, 0.032679738562091505, 0.03217697335344394, 0.03217697335344394, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.033685268979386625, 0.03418803418803419, 0.033685268979386625, 0.3549522373051785, 0.058320764203117145, 0.05178481649069885, 0.033685268979386625, 0.033685268979386625, 0.03418803418803419, 0.033685268979386625, 0.03418803418803419, 0.033685268979386625, 0.033685268979386625, 0.0392156862745098, 0.048265460030165915, 0.17345399698340874, 0.13071895424836602, 0.12619406737053795, 0.042232277526395176, 0.06334841628959276, 0.043237807943690296, 0.04022121669180493, 0.033685268979386625, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.032679738562091505, 0.032679738562091505, 0.03217697335344394, 0.03117144293614882, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03117144293614882, 0.03117144293614882, 0.03117144293614882, 0.03117144293614882, 0.03117144293614882, 0.03117144293614882, 0.03117144293614882, 0.03167420814479638, 0.03217697335344394, 0.032679738562091505, 0.6877828054298643, 0.08547008547008547, 0.030165912518853696, 0.030165912518853696, 0.030668677727501256, 0.030668677727501256, 0.030668677727501256, 0.030668677727501256, 0.030668677727501256, 0.030668677727501256, 0.030668677727501256, 0.03117144293614882, 0.03167420814479638, 0.03217697335344394, 0.033182503770739065, 0.03418803418803419, 0.03619909502262444, 0.04172951231774761, 0.042735042735042736, 0.043740573152337855, 0.04776269482151835, 0.049773755656108594, 0.05178481649069885, 0.05379587732528909, 0.05530417295123177, 0.05530417295123177, 0.05681246857717446, 0.058823529411764705, 0.06033182503770739, 0.06385118149824032, 0.06737053795877325, 0.07541478129713423, 0.08345902463549522, 0.08697838109602815, 0.08949220713926596, 0.09451985922574158, 0.16440422322775264, 0.17596782302664657, 0.1820010055304173, 0.18401206636500755, 0.22071392659627953, 0.7963800904977375, 0.5520361990950227, 0.27953745600804425, 0.1870286576168929, 0.14731020613373555, 0.14881850175967823, 0.1533433886375063, 0.2629462041226747, 0.17345399698340874, 0.146807440925088, 0.15133232780291603, 0.15284062342885874, 0.15233785822021115, 0.15485168426344897, 0.1558572146807441, 0.1583710407239819, 0.2604323780794369, 0.21518350930115637, 0.21216691804927099, 0.16591251885369532, 0.16591251885369532, 0.16691804927099044, 0.16641528406234288, 0.167420814479638, 0.16792357968828556, 0.16842634489693314, 0.17345399698340874, 0.17998994469582705, 0.19155354449472098, 0.2071392659627954, 0.25289089994972347, 0.4419306184012066], "gap_symbol": "-", "mismatch_seqs": 0}
|