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pfam_gap_rates/3H.gap.json

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+{"family": "3H", "n_seqs": 338, "length": 98, "gap_rates": [0.2455621301775148, 0.05621301775147929, 0.029585798816568046, 0.01775147928994083, 0.014792899408284023, 0.9408284023668639, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.005917159763313609, 0.005917159763313609, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.0029585798816568047, 0.008875739644970414, 0.008875739644970414, 0.023668639053254437, 0.029585798816568046, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.01775147928994083, 0.020710059171597635, 0.023668639053254437, 0.09763313609467456], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/3HCDH.gap.json

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+{"family": "3HCDH", "n_seqs": 5000, "length": 107, "gap_rates": [0.2844, 0.1526, 0.0786, 0.063, 0.0494, 0.038, 0.0288, 0.0248, 0.0228, 0.0214, 0.0202, 0.0192, 0.0186, 0.018, 0.0174, 0.0172, 0.016, 0.0138, 0.0138, 0.0134, 0.0138, 0.0126, 0.2754, 0.0142, 0.0062, 0.0056, 0.005, 0.0038, 0.0038, 0.0036, 0.0036, 0.0042, 0.0038, 0.004, 0.0036, 0.2424, 0.0074, 0.0034, 0.003, 0.003, 0.9194, 0.9212, 0.8344, 0.0034, 0.0036, 0.0038, 0.0034, 0.0034, 0.0036, 0.0046, 0.0052, 0.0064, 0.0066, 0.0072, 0.0088, 0.0094, 0.0112, 0.0136, 0.0162, 0.02, 0.0224, 0.0218, 0.0342, 0.9448, 0.948, 0.901, 0.096, 0.0732, 0.0662, 0.066, 0.0662, 0.0866, 0.0808, 0.0814, 0.0832, 0.8546, 0.9268, 0.9022, 0.7396, 0.2014, 0.1126, 0.1282, 0.2392, 0.157, 0.1224, 0.1074, 0.108, 0.1096, 0.1106, 0.118, 0.1264, 0.132, 0.1368, 0.149, 0.1802, 0.2236, 0.2316, 0.2408, 0.2432, 0.2466, 0.249, 0.251, 0.2546, 0.2624, 0.2724, 0.2968, 0.3874], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/3HCDH_N.gap.json

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+{"family": "3HCDH_N", "n_seqs": 4584, "length": 194, "gap_rates": [0.45200698080279234, 0.11125654450261781, 0.07286212914485166, 0.06762652705061083, 0.06544502617801047, 0.06479057591623037, 0.06348167539267016, 0.062390924956369984, 0.061300174520069806, 0.04537521815008726, 0.045157068062827224, 0.04450261780104712, 0.04384816753926701, 0.04384816753926701, 0.04319371727748691, 0.042975567190226875, 0.04057591623036649, 0.03992146596858639, 0.039485165794066315, 0.04013961605584642, 0.039485165794066315, 0.9077225130890052, 0.03904886561954625, 0.037521815008726006, 0.03643106457242583, 0.036212914485165795, 0.03577661431064572, 0.03512216404886562, 0.03577661431064572, 0.03577661431064572, 0.03577661431064572, 0.03599476439790576, 0.039485165794066315, 0.03926701570680628, 0.03883071553228621, 0.03926701570680628, 0.03817626527050611, 0.037085514834205933, 0.03664921465968586, 0.037303664921465966, 0.03795811518324607, 0.037085514834205933, 0.0368673647469459, 0.03773996509598604, 0.040794066317626526, 0.06631762652705062, 0.060209424083769635, 0.055628272251308904, 0.05737347294938918, 0.0636998254799302, 0.08180628272251309, 0.07351657940663177, 0.07504363001745201, 0.0700261780104712, 0.06871727748691099, 0.08224258289703316, 0.07264397905759162, 0.8992146596858639, 0.9144851657940664, 0.9391361256544503, 0.9493891797556719, 0.9432809773123909, 0.9179755671902269, 0.9118673647469459, 0.8806719022687609, 0.15924956369982549, 0.10929319371727748, 0.08638743455497382, 0.07329842931937172, 0.05868237347294939, 0.04581151832460733, 0.040794066317626526, 0.03664921465968586, 0.03446771378708551, 0.03294066317626527, 0.031631762652705064, 0.03206806282722513, 0.04232111692844677, 0.03904886561954625, 0.029668411867364748, 0.029668411867364748, 0.029232111692844676, 0.029013961605584643, 0.028359511343804537, 0.027705061082024432, 0.03446771378708551, 0.7214223385689355, 0.0274869109947644, 0.026614310645724257, 0.026396160558464225, 0.024869109947643978, 0.024869109947643978, 0.02530541012216405, 0.025523560209424083, 0.02443280977312391, 0.02530541012216405, 0.02443280977312391, 0.024869109947643978, 0.024869109947643978, 0.025087260034904014, 0.025087260034904014, 0.02530541012216405, 0.02530541012216405, 0.025523560209424083, 0.025087260034904014, 0.024869109947643978, 0.024869109947643978, 0.024650959860383945, 0.02443280977312391, 0.02443280977312391, 0.025087260034904014, 0.02530541012216405, 0.025959860383944152, 0.03032286212914485, 0.03577661431064572, 0.0274869109947644, 0.027268760907504363, 0.027050610820244327, 0.026396160558464225, 0.02574171029668412, 0.025523560209424083, 0.025523560209424083, 0.026396160558464225, 0.025523560209424083, 0.02530541012216405, 0.025087260034904014, 0.02530541012216405, 0.025523560209424083, 0.025523560209424083, 0.025523560209424083, 0.025959860383944152, 0.02574171029668412, 0.02617801047120419, 0.026396160558464225, 0.0281413612565445, 0.028577661431064574, 0.030541012216404886, 0.031413612565445025, 0.02988656195462478, 0.0462478184991274, 0.04384816753926701, 0.9112129144851658, 0.9092495636998255, 0.02530541012216405, 0.025959860383944152, 0.026614310645724257, 0.02617801047120419, 0.026832460732984294, 0.026396160558464225, 0.027050610820244327, 0.029013961605584643, 0.028795811518324606, 0.028795811518324606, 0.030541012216404886, 0.03446771378708551, 0.032722513089005235, 0.031631762652705064, 0.030104712041884817, 0.0274869109947644, 0.027050610820244327, 0.027923211169284468, 0.028359511343804537, 0.028359511343804537, 0.02988656195462478, 0.031631762652705064, 0.033595113438045374, 0.033595113438045374, 0.03294066317626527, 0.03315881326352531, 0.0325043630017452, 0.03228621291448516, 0.03228621291448516, 0.0325043630017452, 0.03315881326352531, 0.03315881326352531, 0.034031413612565446, 0.034904013961605584, 0.03534031413612566, 0.03599476439790576, 0.03577661431064572, 0.03599476439790576, 0.037303664921465966, 0.8856893542757417, 0.03861256544502618, 0.039485165794066315, 0.04035776614310646, 0.04253926701570681, 0.0549738219895288, 0.06391797556719023, 0.08202443280977312, 0.9024869109947644, 0.18280977312390925, 0.325043630017452, 0.8414048865619547], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/7TMR-DISM_7TM.gap.json

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+{"family": "7TMR-DISM_7TM", "n_seqs": 896, "length": 224, "gap_rates": [0.8962053571428571, 0.6573660714285714, 0.42745535714285715, 0.27455357142857145, 0.1875, 0.11160714285714286, 0.06808035714285714, 0.05580357142857143, 0.041294642857142856, 0.033482142857142856, 0.020089285714285716, 0.017857142857142856, 0.015625, 0.013392857142857142, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.6930803571428571, 0.010044642857142858, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.05580357142857143, 0.022321428571428572, 0.017857142857142856, 0.012276785714285714, 0.012276785714285714, 0.011160714285714286, 0.008928571428571428, 0.011160714285714286, 0.012276785714285714, 0.014508928571428572, 0.30245535714285715, 0.19977678571428573, 0.19308035714285715, 0.078125, 0.07142857142857142, 0.53125, 0.03794642857142857, 0.021205357142857144, 0.016741071428571428, 0.016741071428571428, 0.011160714285714286, 0.008928571428571428, 0.010044642857142858, 0.013392857142857142, 0.011160714285714286, 0.008928571428571428, 0.011160714285714286, 0.010044642857142858, 0.011160714285714286, 0.012276785714285714, 0.017857142857142856, 0.20758928571428573, 0.018973214285714284, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.7276785714285714, 0.008928571428571428, 0.010044642857142858, 0.008928571428571428, 0.012276785714285714, 0.017857142857142856, 0.012276785714285714, 0.010044642857142858, 0.013392857142857142, 0.14955357142857142, 0.04017857142857143, 0.4877232142857143, 0.08482142857142858, 0.12053571428571429, 0.8649553571428571, 0.9386160714285714, 0.8895089285714286, 0.7544642857142857, 0.012276785714285714, 0.016741071428571428, 0.015625, 0.014508928571428572, 0.010044642857142858, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.012276785714285714, 0.013392857142857142, 0.10602678571428571, 0.08147321428571429, 0.025669642857142856, 0.013392857142857142, 0.011160714285714286, 0.012276785714285714, 0.015625, 0.12165178571428571, 0.0546875, 0.029017857142857144, 0.018973214285714284, 0.8950892857142857, 0.9475446428571429, 0.8091517857142857, 0.027901785714285716, 0.020089285714285716, 0.012276785714285714, 0.008928571428571428, 0.010044642857142858, 0.014508928571428572, 0.014508928571428572, 0.014508928571428572, 0.022321428571428572, 0.025669642857142856, 0.9296875, 0.9464285714285714, 0.8928571428571429, 0.012276785714285714, 0.010044642857142858, 0.010044642857142858, 0.011160714285714286, 0.010044642857142858, 0.008928571428571428, 0.011160714285714286, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.008928571428571428, 0.011160714285714286, 0.012276785714285714, 0.012276785714285714, 0.014508928571428572, 0.029017857142857144, 0.9352678571428571, 0.875, 0.020089285714285716, 0.015625, 0.016741071428571428, 0.017857142857142856, 0.017857142857142856, 0.018973214285714284, 0.020089285714285716, 0.020089285714285716, 0.021205357142857144, 0.020089285714285716, 0.021205357142857144, 0.022321428571428572, 0.022321428571428572, 0.0234375, 0.022321428571428572, 0.021205357142857144, 0.021205357142857144, 0.0234375, 0.0234375, 0.022321428571428572, 0.022321428571428572, 0.0234375, 0.024553571428571428, 0.05803571428571429, 0.060267857142857144, 0.14285714285714285, 0.14732142857142858, 0.10825892857142858, 0.09821428571428571, 0.07477678571428571, 0.9263392857142857, 0.8727678571428571, 0.052455357142857144, 0.044642857142857144, 0.04799107142857143, 0.04799107142857143, 0.056919642857142856, 0.8303571428571429, 0.20758928571428573, 0.20089285714285715, 0.17857142857142858, 0.20424107142857142, 0.8984375, 0.07477678571428571, 0.06473214285714286, 0.06584821428571429, 0.07366071428571429, 0.07142857142857142, 0.08482142857142858, 0.08147321428571429, 0.08147321428571429, 0.08258928571428571, 0.0859375, 0.08928571428571429, 0.09375, 0.1015625, 0.12165178571428571, 0.14620535714285715, 0.16294642857142858, 0.18638392857142858, 0.20870535714285715, 0.27232142857142855, 0.47879464285714285, 0.6361607142857143], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/7TM_GPCR_Srx.gap.json

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pfam_gap_rates/7TM_transglut.gap.json

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pfam_gap_rates/AAA_10.gap.json

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pfam_gap_rates/AAA_14.gap.json

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pfam_gap_rates/AAA_2.gap.json

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pfam_gap_rates/AAA_28.gap.json

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pfam_gap_rates/AAA_5.gap.json

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+{"family": "AAA_5", "n_seqs": 5000, "length": 198, "gap_rates": [0.6492, 0.249, 0.1956, 0.1684, 0.1586, 0.1574, 0.156, 0.1544, 0.1534, 0.1518, 0.1512, 0.1504, 0.1484, 0.1468, 0.1456, 0.145, 0.1446, 0.1442, 0.1436, 0.1432, 0.1446, 0.146, 0.144, 0.7422, 0.7874, 0.932, 0.9416, 0.947, 0.94, 0.8708, 0.7648, 0.662, 0.1408, 0.1374, 0.1364, 0.1352, 0.134, 0.1328, 0.1304, 0.13, 0.129, 0.1266, 0.126, 0.1468, 0.1272, 0.1222, 0.1264, 0.1248, 0.1212, 0.118, 0.1168, 0.1142, 0.1124, 0.1116, 0.1114, 0.2638, 0.3898, 0.6788, 0.7684, 0.891, 0.9488, 0.939, 0.8744, 0.7422, 0.591, 0.2496, 0.1858, 0.15, 0.1162, 0.1086, 0.105, 0.104, 0.1026, 0.1014, 0.102, 0.1046, 0.1078, 0.142, 0.124, 0.1244, 0.1004, 0.6328, 0.645, 0.6724, 0.7068, 0.8272, 0.848, 0.9006, 0.91, 0.9156, 0.9226, 0.9318, 0.939, 0.9476, 0.9424, 0.9344, 0.9276, 0.9182, 0.9154, 0.9056, 0.8934, 0.8406, 0.7286, 0.6776, 0.6668, 0.641, 0.6166, 0.0928, 0.0918, 0.09, 0.0936, 0.09, 0.0904, 0.0906, 0.091, 0.0914, 0.0934, 0.0938, 0.285, 0.281, 0.2648, 0.933, 0.0988, 0.0986, 0.0988, 0.099, 0.099, 0.1, 0.1008, 0.1022, 0.1028, 0.1032, 0.1026, 0.1032, 0.1076, 0.1108, 0.1132, 0.1158, 0.118, 0.2076, 0.1988, 0.1528, 0.1496, 0.145, 0.1392, 0.135, 0.1362, 0.1426, 0.1414, 0.147, 0.1548, 0.3038, 0.7152, 0.8954, 0.8142, 0.785, 0.7786, 0.739, 0.8552, 0.8988, 0.9072, 0.9248, 0.9374, 0.9436, 0.9464, 0.942, 0.9326, 0.916, 0.9058, 0.8696, 0.8336, 0.1746, 0.154, 0.1526, 0.153, 0.155, 0.1564, 0.1602, 0.1662, 0.1732, 0.1808, 0.1876, 0.8604, 0.6744, 0.5448, 0.5368, 0.5332, 0.5142, 0.2894, 0.318, 0.3102, 0.3132, 0.313, 0.331, 0.34, 0.3496, 0.356, 0.505], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AAA_6.gap.json

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pfam_gap_rates/AAA_assoc_2.gap.json

@@ -0,0 +1 @@
+{"family": "AAA_assoc_2", "n_seqs": 2264, "length": 90, "gap_rates": [0.8816254416961131, 0.6634275618374559, 0.30874558303886923, 0.18374558303886926, 0.13692579505300354, 0.06890459363957598, 0.06051236749116608, 0.0534452296819788, 0.04063604240282685, 0.03268551236749117, 0.01987632508833922, 0.009717314487632508, 0.009275618374558304, 0.009275618374558304, 0.009275618374558304, 0.0088339222614841, 0.008392226148409895, 0.008392226148409895, 0.0088339222614841, 0.0088339222614841, 0.008392226148409895, 0.008392226148409895, 0.007950530035335688, 0.007950530035335688, 0.007508833922261484, 0.007508833922261484, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.015017667844522967, 0.01060070671378092, 0.0066254416961130744, 0.012809187279151944, 0.10556537102473498, 0.3365724381625442, 0.5225265017667845, 0.855565371024735, 0.8864840989399293, 0.9103356890459364, 0.9377208480565371, 0.9496466431095406, 0.9447879858657244, 0.9275618374558304, 0.8935512367491166, 0.8776501766784452, 0.6294169611307421, 0.3997349823321555, 0.25309187279151946, 0.07818021201413428, 0.0088339222614841, 0.0035335689045936395, 0.0030918727915194345, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.0030918727915194345, 0.00265017667844523, 0.00530035335689046, 0.0017667844522968198, 0.0017667844522968198, 0.005742049469964664, 0.022084805653710248, 0.006183745583038869, 0.007067137809187279, 0.00265017667844523, 0.002208480565371025, 0.002208480565371025, 0.002208480565371025, 0.001325088339222615, 0.04196113074204947, 0.03489399293286219, 0.002208480565371025, 0.00265017667844523, 0.00265017667844523, 0.001325088339222615, 0.0017667844522968198, 0.002208480565371025, 0.002208480565371025, 0.002208480565371025, 0.00265017667844523, 0.00265017667844523, 0.00265017667844523, 0.0030918727915194345, 0.0030918727915194345, 0.0030918727915194345, 0.006183745583038869], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AARP2CN.gap.json

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+{"family": "AARP2CN", "n_seqs": 634, "length": 89, "gap_rates": [0.2917981072555205, 0.18454258675078863, 0.10883280757097792, 0.06309148264984227, 0.04258675078864353, 0.031545741324921134, 0.031545741324921134, 0.02996845425867508, 0.02996845425867508, 0.02996845425867508, 0.028391167192429023, 0.026813880126182965, 0.026813880126182965, 0.03627760252365931, 0.9006309148264984, 0.026813880126182965, 0.01892744479495268, 0.02050473186119874, 0.01892744479495268, 0.01892744479495268, 0.017350157728706624, 0.015772870662460567, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.011041009463722398, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.01892744479495268, 0.022082018927444796, 0.028391167192429023, 0.052050473186119876, 0.0694006309148265, 0.07728706624605679, 0.08990536277602523, 0.10883280757097792, 0.12618296529968454, 0.4794952681388013, 0.9211356466876972, 0.46529968454258674, 0.44637223974763407, 0.4384858044164038, 0.42586750788643535, 0.32018927444794953, 0.23817034700315456, 0.1498422712933754, 0.12460567823343849, 0.04100946372239748, 0.017350157728706624, 0.012618296529968454, 0.011041009463722398, 0.011041009463722398, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.8438485804416404, 0.017350157728706624, 0.017350157728706624, 0.017350157728706624, 0.02050473186119874, 0.017350157728706624, 0.01892744479495268, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.0473186119873817, 0.07728706624605679, 0.167192429022082, 0.25236593059936907, 0.27129337539432175], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ABC1.gap.json

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+{"family": "ABC1", "n_seqs": 3980, "length": 135, "gap_rates": [0.8155778894472362, 0.31532663316582915, 0.2379396984924623, 0.1984924623115578, 0.18693467336683417, 0.15175879396984926, 0.13693467336683418, 0.12487437185929648, 0.11105527638190955, 0.10276381909547738, 0.09949748743718594, 0.0949748743718593, 0.08618090452261307, 0.08065326633165829, 0.06633165829145729, 0.06281407035175879, 0.08919597989949749, 0.05577889447236181, 0.05402010050251256, 0.053768844221105526, 0.053266331658291456, 0.05301507537688442, 0.05251256281407035, 0.05150753768844221, 0.05100502512562814, 0.04924623115577889, 0.04924623115577889, 0.05050251256281407, 0.05025125628140704, 0.05075376884422111, 0.05251256281407035, 0.057035175879396986, 0.07261306532663317, 0.770854271356784, 0.06959798994974874, 0.9278894472361809, 0.9394472361809045, 0.9221105527638191, 0.06482412060301508, 0.05, 0.9133165829145728, 0.9396984924623115, 0.949748743718593, 0.9304020100502512, 0.9082914572864321, 0.04170854271356784, 0.04020100502512563, 0.04020100502512563, 0.039447236180904524, 0.039447236180904524, 0.03969849246231156, 0.04095477386934673, 0.040452261306532664, 0.039949748743718594, 0.040452261306532664, 0.04095477386934673, 0.0407035175879397, 0.04170854271356784, 0.04246231155778894, 0.04120603015075377, 0.04195979899497487, 0.04195979899497487, 0.04221105527638191, 0.04221105527638191, 0.04195979899497487, 0.04221105527638191, 0.04246231155778894, 0.04246231155778894, 0.04296482412060301, 0.04321608040201005, 0.043718592964824124, 0.0449748743718593, 0.08190954773869347, 0.06407035175879397, 0.059547738693467335, 0.05577889447236181, 0.05226130653266332, 0.05552763819095478, 0.05879396984924623, 0.06432160804020101, 0.05628140703517588, 0.05979899497487437, 0.9442211055276382, 0.5972361809045226, 0.4482412060301508, 0.38894472361809046, 0.06658291457286432, 0.06105527638190955, 0.05452261306532663, 0.05351758793969849, 0.05301507537688442, 0.05251256281407035, 0.05226130653266332, 0.05201005025125628, 0.05226130653266332, 0.05301507537688442, 0.052763819095477386, 0.05301507537688442, 0.053266331658291456, 0.054271356783919596, 0.054271356783919596, 0.05402010050251256, 0.05452261306532663, 0.05452261306532663, 0.0550251256281407, 0.05527638190954774, 0.05577889447236181, 0.05603015075376885, 0.05603015075376885, 0.056532663316582916, 0.05778894472361809, 0.05778894472361809, 0.058542713567839195, 0.058542713567839195, 0.060552763819095475, 0.061809045226130656, 0.06683417085427136, 0.07035175879396985, 0.07814070351758794, 0.0899497487437186, 0.10050251256281408, 0.11080402010050251, 0.8806532663316583, 0.9402010050251256, 0.9027638190954774, 0.8620603015075377, 0.12562814070351758, 0.9489949748743719, 0.1306532663316583, 0.13517587939698492, 0.14246231155778893, 0.14773869346733667, 0.17160804020100504, 0.26532663316582916, 0.6587939698492462], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ABC_membrane.gap.json

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pfam_gap_rates/ABC_tran_CTD.gap.json

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pfam_gap_rates/AIF_C.gap.json

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pfam_gap_rates/AIP3.gap.json

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pfam_gap_rates/AIRS.gap.json

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pfam_gap_rates/AMMECR1.gap.json

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pfam_gap_rates/ANAPC_CDC26.gap.json

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pfam_gap_rates/ANATO.gap.json

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pfam_gap_rates/APG12.gap.json

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pfam_gap_rates/ARS2.gap.json

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pfam_gap_rates/ASCH.gap.json

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pfam_gap_rates/ASH.gap.json

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pfam_gap_rates/ATG16.gap.json

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pfam_gap_rates/ATP-grasp_2.gap.json

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pfam_gap_rates/ATP-synt.gap.json

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pfam_gap_rates/ATP-synt_DE.gap.json

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pfam_gap_rates/ATP-synt_I.gap.json

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pfam_gap_rates/ATP-synt_ab_Xtn.gap.json

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+{"family": "ATP-synt_ab_Xtn", "n_seqs": 856, "length": 128, "gap_rates": [0.06074766355140187, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02336448598130841, 0.02570093457943925, 0.029205607476635514, 0.028037383177570093, 0.07476635514018691, 0.07476635514018691, 0.07126168224299065, 0.02570093457943925, 0.02102803738317757, 0.47079439252336447, 0.01985981308411215, 0.02102803738317757, 0.02102803738317757, 0.02102803738317757, 0.02102803738317757, 0.01985981308411215, 0.01985981308411215, 0.018691588785046728, 0.01985981308411215, 0.01985981308411215, 0.02102803738317757, 0.01985981308411215, 0.01985981308411215, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.8177570093457944, 0.610981308411215, 0.016355140186915886, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.017523364485981307, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.16238317757009346, 0.780373831775701, 0.018691588785046728, 0.016355140186915886, 0.016355140186915886, 0.016355140186915886, 0.014018691588785047, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.02102803738317757, 0.01985981308411215, 0.015186915887850467, 0.014018691588785047, 0.014018691588785047, 0.8901869158878505, 0.8714953271028038, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.016355140186915886, 0.2757009345794392, 0.017523364485981307, 0.016355140186915886, 0.016355140186915886, 0.015186915887850467, 0.015186915887850467, 0.015186915887850467, 0.016355140186915886, 0.017523364485981307, 0.017523364485981307, 0.017523364485981307, 0.017523364485981307, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.029205607476635514, 0.038551401869158876, 0.04322429906542056, 0.6740654205607477, 0.10864485981308411, 0.09462616822429906, 0.08644859813084112, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02453271028037383, 0.02453271028037383, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.02570093457943925, 0.026869158878504672, 0.9310747663551402, 0.05023364485981308, 0.052570093457943924, 0.06775700934579439, 0.07126168224299065, 0.07710280373831775, 0.08878504672897196, 0.37616822429906543], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ATP_sub_h.gap.json

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+{"family": "ATP_sub_h", "n_seqs": 128, "length": 72, "gap_rates": [0.1875, 0.1875, 0.1171875, 0.109375, 0.2265625, 0.6328125, 0.1015625, 0.09375, 0.078125, 0.046875, 0.0390625, 0.03125, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0234375, 0.0859375, 0.0234375, 0.015625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0078125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015625, 0.015625, 0.5, 0.8984375, 0.859375, 0.015625, 0.015625, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.03125, 0.140625, 0.4765625], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AZUL.gap.json

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pfam_gap_rates/A_deamin.gap.json

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pfam_gap_rates/AbLIM_anchor.gap.json

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pfam_gap_rates/AcetDehyd-dimer.gap.json

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pfam_gap_rates/Acyl-ACP_TE.gap.json

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pfam_gap_rates/Acyl_transf_1.gap.json

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pfam_gap_rates/Adaptin_binding.gap.json

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pfam_gap_rates/Adenyl_transf.gap.json

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pfam_gap_rates/Agenet.gap.json

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pfam_gap_rates/AlbA_2.gap.json

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pfam_gap_rates/Aldolase.gap.json

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pfam_gap_rates/Alpha-amylase_N.gap.json

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+{"family": "Alpha-amylase_N", "n_seqs": 350, "length": 131, "gap_rates": [0.32857142857142857, 0.32571428571428573, 0.3, 0.2857142857142857, 0.26857142857142857, 0.24, 0.22857142857142856, 0.22, 0.2257142857142857, 0.22, 0.21428571428571427, 0.21714285714285714, 0.21714285714285714, 0.21142857142857144, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.2257142857142857, 0.1742857142857143, 0.10571428571428572, 0.06, 0.04, 0.025714285714285714, 0.025714285714285714, 0.025714285714285714, 0.02, 0.017142857142857144, 0.017142857142857144, 0.014285714285714285, 0.017142857142857144, 0.08571428571428572, 0.02857142857142857, 0.02, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.011428571428571429, 0.022857142857142857, 0.022857142857142857, 0.02, 0.022857142857142857, 0.045714285714285714, 0.12571428571428572, 0.14285714285714285, 0.7685714285714286, 0.7885714285714286, 0.88, 0.9457142857142857, 0.7942857142857143, 0.7714285714285715, 0.5914285714285714, 0.52, 0.5057142857142857, 0.34285714285714286, 0.30857142857142855, 0.2857142857142857, 0.26285714285714284, 0.2257142857142857, 0.19428571428571428, 0.1, 0.06285714285714286, 0.008571428571428572, 0.008571428571428572, 0.005714285714285714, 0.005714285714285714, 0.002857142857142857, 0.005714285714285714, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.008571428571428572, 0.002857142857142857, 0.002857142857142857, 0.0, 0.002857142857142857, 0.002857142857142857, 0.0, 0.002857142857142857, 0.005714285714285714, 0.002857142857142857, 0.014285714285714285, 0.002857142857142857, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.017142857142857144, 0.6942857142857143, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.008571428571428572, 0.008571428571428572, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.8257142857142857, 0.9428571428571428, 0.7771428571428571, 0.045714285714285714, 0.07142857142857142, 0.07714285714285714, 0.08, 0.12, 0.1457142857142857, 0.19428571428571428, 0.23714285714285716, 0.5885714285714285, 0.38, 0.36, 0.30857142857142855, 0.3171428571428571, 0.32571428571428573, 0.3457142857142857, 0.3514285714285714, 0.38285714285714284, 0.4114285714285714, 0.44, 0.5628571428571428], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Ank_4.gap.json

@@ -0,0 +1 @@
+{"family": "Ank_4", "n_seqs": 5000, "length": 56, "gap_rates": [0.8908, 0.5642, 0.2994, 0.2154, 0.1666, 0.1528, 0.1366, 0.1216, 0.1128, 0.1076, 0.0896, 0.0704, 0.0616, 0.0498, 0.036, 0.0234, 0.018, 0.0158, 0.0138, 0.0116, 0.0112, 0.0172, 0.02, 0.9044, 0.0224, 0.0196, 0.0172, 0.0192, 0.0136, 0.0094, 0.0206, 0.868, 0.0286, 0.0158, 0.0282, 0.0086, 0.0074, 0.0052, 0.0034, 0.004, 0.0068, 0.0102, 0.0134, 0.022, 0.0418, 0.0634, 0.076, 0.0962, 0.1192, 0.1358, 0.1484, 0.159, 0.1802, 0.2082, 0.2316, 0.354], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Apocytochr_F_N.gap.json

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pfam_gap_rates/ArabFuran-catal.gap.json

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pfam_gap_rates/Arc.gap.json

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