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pfam_gap_rates/2OG-FeII_Oxy.gap.json

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pfam_gap_rates/2OG-FeII_Oxy_3.gap.json

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pfam_gap_rates/3Beta_HSD.gap.json

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pfam_gap_rates/5-FTHF_cyc-lig.gap.json

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pfam_gap_rates/7TM_GPCR_Sri.gap.json

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pfam_gap_rates/7tm_2.gap.json

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pfam_gap_rates/7tm_6.gap.json

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pfam_gap_rates/AAA.gap.json

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pfam_gap_rates/AAA_13.gap.json

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pfam_gap_rates/AAA_24.gap.json

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pfam_gap_rates/AAA_30.gap.json

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pfam_gap_rates/AAA_34.gap.json

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pfam_gap_rates/AAA_7.gap.json

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pfam_gap_rates/AATF-Che1.gap.json

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pfam_gap_rates/ADH_zinc_N_2.gap.json

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pfam_gap_rates/AIG1.gap.json

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pfam_gap_rates/AKAP7_NLS.gap.json

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pfam_gap_rates/AMIN.gap.json

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pfam_gap_rates/ANAPC1.gap.json

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pfam_gap_rates/ANAPC8.gap.json

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pfam_gap_rates/APG6.gap.json

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pfam_gap_rates/APH_6_hur.gap.json

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pfam_gap_rates/API5.gap.json

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pfam_gap_rates/APP_amyloid.gap.json

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pfam_gap_rates/AP_endonuc_2_N.gap.json

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pfam_gap_rates/ARL2_Bind_BART.gap.json

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pfam_gap_rates/ATG22.gap.json

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pfam_gap_rates/ATG7_N.gap.json

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pfam_gap_rates/ATP-gua_PtransN.gap.json

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pfam_gap_rates/ATP-synt_A.gap.json

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pfam_gap_rates/ATP-synt_G.gap.json

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pfam_gap_rates/ATP-synt_S1.gap.json

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pfam_gap_rates/ATP12.gap.json

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pfam_gap_rates/ATP_bind_2.gap.json

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pfam_gap_rates/A_deaminase.gap.json

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pfam_gap_rates/Acetyltransf_11.gap.json

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+{"family": "Acetyltransf_11", "n_seqs": 1083, "length": 88, "gap_rates": [0.028624192059095107, 0.00554016620498615, 0.00554016620498615, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0332409972299169, 0.00554016620498615, 0.9464450600184672, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0009233610341643582, 0.0, 0.0, 0.023084025854108958, 0.0018467220683287165, 0.0018467220683287165, 0.0018467220683287165, 0.003693444136657433, 0.003693444136657433, 0.00554016620498615, 0.007386888273314866, 0.007386888273314866, 0.007386888273314866, 0.009233610341643583, 0.009233610341643583, 0.009233610341643583, 0.009233610341643583, 0.0110803324099723, 0.012003693444136657, 0.012003693444136657, 0.012927054478301015, 0.014773776546629732, 0.9270544783010157, 0.017543859649122806, 0.020313942751615882, 0.04524469067405355, 0.020313942751615882, 0.019390581717451522, 0.018467220683287166, 0.019390581717451522, 0.018467220683287166, 0.018467220683287166, 0.018467220683287166, 0.019390581717451522, 0.019390581717451522, 0.9242843951985226, 0.9021237303785781, 0.02123730378578024, 0.18005540166204986, 0.06832871652816251, 0.06278855032317636, 0.036011080332409975, 0.03970452446906741, 0.03139427516158818, 0.029547553093259463, 0.027700831024930747, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.024007386888273315, 0.9270544783010157, 0.027700831024930747, 0.8808864265927978, 0.04524469067405355, 0.06832871652816251, 0.07202216066481995, 0.1172668513388735, 0.1837488457987073, 0.46814404432132967], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Acetyltransf_3.gap.json

@@ -0,0 +1 @@
+{"family": "Acetyltransf_3", "n_seqs": 5000, "length": 172, "gap_rates": [0.5692, 0.3636, 0.2422, 0.1816, 0.171, 0.1634, 0.1552, 0.1518, 0.144, 0.1382, 0.1328, 0.1564, 0.128, 0.1234, 0.1232, 0.9466, 0.1246, 0.9456, 0.1354, 0.9306, 0.1372, 0.1154, 0.1102, 0.1188, 0.1082, 0.1074, 0.8636, 0.117, 0.112, 0.1456, 0.9384, 0.126, 0.7032, 0.8648, 0.5022, 0.1158, 0.1458, 0.1104, 0.7652, 0.9492, 0.884, 0.6544, 0.1022, 0.09, 0.0876, 0.0802, 0.0726, 0.0694, 0.0678, 0.0662, 0.0634, 0.0626, 0.0626, 0.0626, 0.154, 0.2356, 0.8076, 0.9248, 0.852, 0.764, 0.1392, 0.1556, 0.17, 0.3602, 0.3718, 0.317, 0.205, 0.0624, 0.047, 0.935, 0.8806, 0.0686, 0.0536, 0.7876, 0.0268, 0.0248, 0.0234, 0.1218, 0.0658, 0.9096, 0.9394, 0.8484, 0.0314, 0.0452, 0.0442, 0.1896, 0.9166, 0.9396, 0.8476, 0.0154, 0.4616, 0.0122, 0.0108, 0.0106, 0.0108, 0.013, 0.0114, 0.011, 0.0362, 0.0234, 0.0226, 0.0224, 0.028, 0.0804, 0.1518, 0.2242, 0.8328, 0.9112, 0.9282, 0.8596, 0.6766, 0.0096, 0.008, 0.0072, 0.0074, 0.0074, 0.0072, 0.0072, 0.007, 0.931, 0.006, 0.006, 0.894, 0.0094, 0.0136, 0.0086, 0.0074, 0.0066, 0.0066, 0.0064, 0.0068, 0.0068, 0.007, 0.0074, 0.0082, 0.0082, 0.009, 0.0096, 0.01, 0.0104, 0.0114, 0.1196, 0.0332, 0.024, 0.0224, 0.9444, 0.065, 0.0252, 0.019, 0.0236, 0.015, 0.0162, 0.0162, 0.0164, 0.0172, 0.018, 0.0184, 0.0186, 0.019, 0.0192, 0.02, 0.021, 0.0208, 0.0228, 0.0236, 0.0246, 0.027, 0.0302, 0.0366, 0.051, 0.0964, 0.4478], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Ada3.gap.json

@@ -0,0 +1 @@
+{"family": "Ada3", "n_seqs": 235, "length": 174, "gap_rates": [0.774468085106383, 0.37872340425531914, 0.3404255319148936, 0.23829787234042554, 0.15319148936170213, 0.1148936170212766, 0.10212765957446808, 0.09787234042553192, 0.09787234042553192, 0.08936170212765958, 0.08936170212765958, 0.0851063829787234, 0.0851063829787234, 0.08085106382978724, 0.08085106382978724, 0.08085106382978724, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.8127659574468085, 0.8170212765957446, 0.8170212765957446, 0.825531914893617, 0.8595744680851064, 0.8638297872340426, 0.8893617021276595, 0.8978723404255319, 0.902127659574468, 0.9063829787234042, 0.9148936170212766, 0.9234042553191489, 0.9361702127659575, 0.948936170212766, 0.9276595744680851, 0.9191489361702128, 0.9106382978723404, 0.9063829787234042, 0.8978723404255319, 0.8936170212765957, 0.8808510638297873, 0.8638297872340426, 0.8468085106382979, 0.8170212765957446, 0.8170212765957446, 0.8127659574468085, 0.8127659574468085, 0.2170212765957447, 0.20425531914893616, 0.09361702127659574, 0.09361702127659574, 0.0851063829787234, 0.10638297872340426, 0.1702127659574468, 0.8893617021276595, 0.7617021276595745, 0.30638297872340425, 0.225531914893617, 0.06808510638297872, 0.03404255319148936, 0.02553191489361702, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01702127659574468, 0.01276595744680851, 0.00851063829787234, 0.00851063829787234, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.00425531914893617, 0.01702127659574468, 0.02553191489361702, 0.02553191489361702, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.02553191489361702, 0.029787234042553193, 0.029787234042553193, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02553191489361702, 0.02553191489361702, 0.03404255319148936, 0.029787234042553193, 0.03404255319148936, 0.6595744680851063, 0.7276595744680852, 0.7659574468085106, 0.7574468085106383, 0.723404255319149, 0.6468085106382979, 0.03404255319148936, 0.05531914893617021, 0.059574468085106386, 0.06382978723404255, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.07234042553191489, 0.0851063829787234, 0.11063829787234042, 0.17446808510638298, 0.225531914893617, 0.3276595744680851, 0.39148936170212767, 0.44680851063829785, 0.625531914893617, 0.6723404255319149, 0.7404255319148936, 0.8553191489361702, 0.8978723404255319, 0.8340425531914893, 0.7148936170212766, 0.6382978723404256, 0.6127659574468085, 0.5234042553191489, 0.5574468085106383, 0.5446808510638298, 0.5531914893617021, 0.5531914893617021, 0.5574468085106383, 0.574468085106383, 0.5702127659574469, 0.5829787234042553, 0.5872340425531914, 0.6, 0.6042553191489362, 0.6127659574468085, 0.6212765957446809, 0.6297872340425532, 0.6297872340425532, 0.6297872340425532, 0.6425531914893617, 0.6425531914893617, 0.6425531914893617, 0.6425531914893617, 0.6468085106382979, 0.6595744680851063], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AdenylateSensor.gap.json

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+{"family": "AdenylateSensor", "n_seqs": 273, "length": 154, "gap_rates": [0.19047619047619047, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18681318681318682, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.18315018315018314, 0.19413919413919414, 0.21611721611721613, 0.28205128205128205, 0.4358974358974359, 0.9010989010989011, 0.9010989010989011, 0.9084249084249084, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9304029304029304, 0.9377289377289377, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9157509157509157, 0.9084249084249084, 0.9010989010989011, 0.9010989010989011, 0.6886446886446886, 0.7545787545787546, 0.6373626373626373, 0.42124542124542125, 0.32967032967032966, 0.326007326007326, 0.31135531135531136, 0.315018315018315, 0.315018315018315, 0.32234432234432236, 0.3443223443223443, 0.37362637362637363, 0.3956043956043956, 0.3956043956043956, 0.4358974358974359, 0.4432234432234432, 0.5824175824175825, 0.63003663003663, 0.9487179487179487, 0.9413919413919414, 0.5787545787545788, 0.5787545787545788, 0.5311355311355311, 0.3076923076923077, 0.9377289377289377, 0.9194139194139194, 0.22344322344322345, 0.9267399267399268, 0.9340659340659341, 0.9413919413919414, 0.9413919413919414, 0.9340659340659341, 0.9230769230769231, 0.20146520146520147, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.18315018315018314, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.19413919413919414, 0.2857142857142857, 0.304029304029304, 0.3333333333333333, 0.3443223443223443, 0.3882783882783883, 0.43956043956043955, 0.4652014652014652, 0.4835164835164835, 0.5238095238095238, 0.6666666666666666, 0.8827838827838828, 0.9120879120879121, 0.9413919413919414, 0.9487179487179487, 0.9487179487179487, 0.9304029304029304, 0.8974358974358975, 0.8608058608058609, 0.6923076923076923, 0.706959706959707, 0.7216117216117216, 0.717948717948718, 0.608058608058608, 0.608058608058608, 0.6117216117216118, 0.6117216117216118, 0.6227106227106227, 0.6336996336996337, 0.63003663003663, 0.6227106227106227, 0.9487179487179487, 0.945054945054945, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6227106227106227, 0.6263736263736264, 0.63003663003663, 0.6336996336996337, 0.6336996336996337, 0.6336996336996337, 0.6336996336996337, 0.6373626373626373, 0.673992673992674], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AhpC-TSA_2.gap.json

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+{"family": "AhpC-TSA_2", "n_seqs": 490, "length": 230, "gap_rates": [0.8714285714285714, 0.5489795918367347, 0.5306122448979592, 0.48367346938775513, 0.45102040816326533, 0.39387755102040817, 0.336734693877551, 0.31020408163265306, 0.2714285714285714, 0.28775510204081634, 0.2653061224489796, 0.22040816326530613, 0.1836734693877551, 0.10204081632653061, 0.06326530612244897, 0.05918367346938776, 0.05510204081632653, 0.053061224489795916, 0.03877551020408163, 0.03877551020408163, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.5693877551020409, 0.03469387755102041, 0.5040816326530613, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.02857142857142857, 0.024489795918367346, 0.16122448979591836, 0.08163265306122448, 0.9204081632653062, 0.8857142857142857, 0.02040816326530612, 0.018367346938775512, 0.0163265306122449, 0.014285714285714285, 0.012244897959183673, 0.01020408163265306, 0.7448979591836735, 0.01020408163265306, 0.01020408163265306, 0.00816326530612245, 0.00816326530612245, 0.01020408163265306, 0.00816326530612245, 0.00816326530612245, 0.006122448979591836, 0.00816326530612245, 0.006122448979591836, 0.006122448979591836, 0.004081632653061225, 0.004081632653061225, 0.004081632653061225, 0.00816326530612245, 0.00816326530612245, 0.889795918367347, 0.8938775510204081, 0.9020408163265307, 0.9102040816326531, 0.926530612244898, 0.9448979591836735, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9489795918367347, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9469387755102041, 0.9448979591836735, 0.936734693877551, 0.9204081632653062, 0.9040816326530612, 0.8979591836734694, 0.8918367346938776, 0.8795918367346939, 0.012244897959183673, 0.044897959183673466, 0.044897959183673466, 0.05102040816326531, 0.03877551020408163, 0.03877551020408163, 0.02857142857142857, 0.9204081632653062, 0.030612244897959183, 0.9326530612244898, 0.024489795918367346, 0.036734693877551024, 0.05102040816326531, 0.9020408163265307, 0.9428571428571428, 0.9346938775510204, 0.7795918367346939, 0.04897959183673469, 0.04693877551020408, 0.05102040816326531, 0.04693877551020408, 0.753061224489796, 0.8448979591836735, 0.8775510204081632, 0.7816326530612245, 0.6836734693877551, 0.05510204081632653, 0.07551020408163266, 0.9285714285714286, 0.9326530612244898, 0.8816326530612245, 0.1326530612244898, 0.08979591836734693, 0.0653061224489796, 0.04285714285714286, 0.0326530612244898, 0.0326530612244898, 0.036734693877551024, 0.03877551020408163, 0.09387755102040816, 0.8448979591836735, 0.9489795918367347, 0.7142857142857143, 0.15306122448979592, 0.09387755102040816, 0.06938775510204082, 0.05510204081632653, 0.0673469387755102, 0.030612244897959183, 0.8, 0.8224489795918367, 0.8469387755102041, 0.863265306122449, 0.8734693877551021, 0.8816326530612245, 0.889795918367347, 0.8959183673469387, 0.9, 0.9040816326530612, 0.9061224489795918, 0.9061224489795918, 0.9061224489795918, 0.9081632653061225, 0.9081632653061225, 0.9102040816326531, 0.9142857142857143, 0.9163265306122449, 0.9183673469387755, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9224489795918367, 0.9224489795918367, 0.9244897959183673, 0.926530612244898, 0.926530612244898, 0.9285714285714286, 0.9306122448979591, 0.9306122448979591, 0.9326530612244898, 0.9346938775510204, 0.9326530612244898, 0.9306122448979591, 0.9285714285714286, 0.926530612244898, 0.926530612244898, 0.926530612244898, 0.9244897959183673, 0.9224489795918367, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9204081632653062, 0.9163265306122449, 0.9142857142857143, 0.9122448979591836, 0.9102040816326531, 0.9081632653061225, 0.9081632653061225, 0.9061224489795918, 0.9061224489795918, 0.9061224489795918, 0.9020408163265307, 0.8959183673469387, 0.8938775510204081, 0.8877551020408163, 0.8775510204081632, 0.8693877551020408, 0.8489795918367347, 0.8346938775510204, 0.8142857142857143, 0.7204081632653061, 0.022448979591836733, 0.024489795918367346, 0.030612244897959183, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.026530612244897958, 0.026530612244897958, 0.02857142857142857, 0.02857142857142857, 0.17142857142857143, 0.07346938775510205, 0.18775510204081633, 0.1346938775510204, 0.7653061224489796, 0.14489795918367346, 0.14081632653061224, 0.1469387755102041, 0.15918367346938775, 0.1816326530612245, 0.21020408163265306, 0.22040816326530613, 0.2673469387755102, 0.37142857142857144, 0.6775510204081633], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Ald_Xan_dh_C.gap.json

@@ -0,0 +1 @@
+{"family": "Ald_Xan_dh_C", "n_seqs": 2902, "length": 125, "gap_rates": [0.3173673328738801, 0.08132322536181943, 0.07133011716057891, 0.055823569951757405, 0.04962095106822881, 0.04410751206064783, 0.042384562370778776, 0.04169538249483115, 0.04066161268090972, 0.03997243280496209, 0.0368711233631978, 0.03445899379738112, 0.03239145416953825, 0.028945554789800137, 0.028256374913852515, 0.025155065472088216, 0.7060647829083391, 0.02308752584424535, 0.021709166092350102, 0.02101998621640248, 0.02067539627842867, 0.02067539627842867, 0.02101998621640248, 0.02067539627842867, 0.02033080634045486, 0.019986216402481046, 0.02033080634045486, 0.018607856650585803, 0.01826326671261199, 0.01826326671261199, 0.018952446588559616, 0.02308752584424535, 0.021709166092350102, 0.01826326671261199, 0.018607856650585803, 0.018952446588559616, 0.018952446588559616, 0.02101998621640248, 0.02653342522398346, 0.027911784975878703, 0.02446588559614059, 0.02033080634045486, 0.021364576154376293, 0.027567195037904894, 0.026878015161957272, 0.021709166092350102, 0.022742935906271536, 0.01722949689869056, 0.019641626464507237, 0.025499655410062026, 0.03239145416953825, 0.0368711233631978, 0.03893866299104066, 0.042384562370778776, 0.04410751206064783, 0.04514128187456926, 0.04686423156443832, 0.0709855272226051, 0.07167470709855273, 0.06719503790489317, 0.06064782908339077, 0.23983459682977257, 0.6574776016540317, 0.7915230875258442, 0.8807718814610613, 0.9152308752584425, 0.8421778084079945, 0.7291523087525844, 0.5827015851137147, 0.26361130254996556, 0.26636802205375604, 0.2064093728463129, 0.19848380427291523, 0.1702274293590627, 0.20847691247415576, 0.2656788421778084, 0.8177119228118539, 0.8680220537560304, 0.9276361130254996, 0.945210199862164, 0.8893866299104066, 0.8270158511371468, 0.770158511371468, 0.39352170916609236, 0.27015851137146796, 0.057891109579600274, 0.05478980013783598, 0.052033080634045485, 0.052377670572019294, 0.04996554100620262, 0.04893177119228118, 0.04789800137835975, 0.04686423156443832, 0.046519641626464506, 0.046519641626464506, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.04720882150241213, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.04686423156443832, 0.048242591316333565, 0.04962095106822881, 0.05134390075809786, 0.052377670572019294, 0.05306685044796692, 0.05478980013783598, 0.05478980013783598, 0.055478980013783596, 0.055478980013783596, 0.05685733976567884, 0.057546519641626465, 0.057546519641626465, 0.05892487939352171, 0.06202618883528601, 0.06547208821502412, 0.0740868366643694, 0.07753273604410751, 0.08924879393521709, 0.09476223294279806, 0.12508614748449345, 0.24328049620951067, 0.5654720882150241], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Alg14.gap.json

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pfam_gap_rates/Alph_Pro_TM.gap.json

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+{"family": "Alph_Pro_TM", "n_seqs": 174, "length": 241, "gap_rates": [0.8908045977011494, 0.06321839080459771, 0.05172413793103448, 0.034482758620689655, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.21839080459770116, 0.22413793103448276, 0.22988505747126436, 0.21839080459770116, 0.29310344827586204, 0.3850574712643678, 0.9367816091954023, 0.6609195402298851, 0.3103448275862069, 0.27586206896551724, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.022988505747126436, 0.022988505747126436, 0.011494252873563218, 0.06321839080459771, 0.011494252873563218, 0.005747126436781609, 0.0, 0.0, 0.0, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.017241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005747126436781609, 0.7988505747126436, 0.896551724137931, 0.9080459770114943, 0.9195402298850575, 0.9195402298850575, 0.9080459770114943, 0.867816091954023, 0.7241379310344828, 0.6149425287356322, 0.16666666666666666, 0.13793103448275862, 0.08045977011494253, 0.05747126436781609, 0.05172413793103448, 0.04597701149425287, 0.028735632183908046, 0.022988505747126436, 0.022988505747126436, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011494252873563218, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.040229885057471264, 0.005747126436781609, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.017241379310344827, 0.017241379310344827, 0.10919540229885058, 0.40804597701149425], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AmiS_UreI.gap.json

@@ -0,0 +1 @@
+{"family": "AmiS_UreI", "n_seqs": 100, "length": 182, "gap_rates": [0.32, 0.11, 0.1, 0.08, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.89, 0.94, 0.89, 0.89, 0.38, 0.33, 0.3, 0.29, 0.25, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.93, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.04, 0.07, 0.23, 0.15, 0.56, 0.82, 0.83, 0.95, 0.95, 0.95, 0.95, 0.84, 0.83, 0.59, 0.53, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.01, 0.75, 0.16, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.03, 0.03, 0.03, 0.03, 0.03, 0.04, 0.05, 0.07, 0.16, 0.94], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Amidase_2.gap.json

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pfam_gap_rates/Amidase_6.gap.json

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pfam_gap_rates/Aminotran_MocR.gap.json

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pfam_gap_rates/Ammonium_transp.gap.json

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pfam_gap_rates/Anillin.gap.json

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pfam_gap_rates/Anp1.gap.json

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