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pfam_gap_rates/2-oxoacid_dh.gap.json

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pfam_gap_rates/2-oxogl_dehyd_N.gap.json

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+{"family": "2-oxogl_dehyd_N", "n_seqs": 1227, "length": 40, "gap_rates": [0.5859820700896495, 0.33088834555827223, 0.29665851670741644, 0.24938875305623473, 0.10024449877750612, 0.06927465362673187, 0.05460472697636512, 0.039119804400977995, 0.03178484107579462, 0.027709861450692746, 0.026079869600651995, 0.015484922575387123, 0.014669926650366748, 0.013039934800325998, 0.0008149959250203749, 0.0008149959250203749, 0.0008149959250203749, 0.0008149959250203749, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008149959250203749, 0.0016299918500407497, 0.0016299918500407497, 0.0024449877750611247, 0.008149959250203748, 0.010594947025264874, 0.013039934800325998, 0.020374898125509373, 0.03667481662591687, 0.07660961695191525, 0.11491442542787286, 0.2371638141809291, 0.5240423797881011], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/4_1_CTD.gap.json

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pfam_gap_rates/5-nucleotidase.gap.json

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pfam_gap_rates/7TM_GPCR_Srbc.gap.json

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pfam_gap_rates/7TM_GPCR_Srw.gap.json

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pfam_gap_rates/AAA-ATPase_like.gap.json

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pfam_gap_rates/AAA_11.gap.json

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pfam_gap_rates/AAA_12.gap.json

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pfam_gap_rates/AAA_17.gap.json

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pfam_gap_rates/AAL_decarboxy.gap.json

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pfam_gap_rates/AAR2.gap.json

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pfam_gap_rates/ABA_GPCR.gap.json

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pfam_gap_rates/ABC_ATPase.gap.json

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pfam_gap_rates/ABC_tran_Xtn.gap.json

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pfam_gap_rates/ABC_trans_N.gap.json

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pfam_gap_rates/ABC_transp_aux.gap.json

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pfam_gap_rates/ACP.gap.json

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pfam_gap_rates/AC_N.gap.json

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pfam_gap_rates/ADP_ribosyl_GH.gap.json

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pfam_gap_rates/AHSA1.gap.json

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pfam_gap_rates/AI-2E_transport.gap.json

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pfam_gap_rates/ALF.gap.json

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+{"family": "ALF", "n_seqs": 151, "length": 45, "gap_rates": [0.271523178807947, 0.2119205298013245, 0.17880794701986755, 0.13245033112582782, 0.11258278145695365, 0.08609271523178808, 0.0728476821192053, 0.059602649006622516, 0.046357615894039736, 0.8609271523178808, 0.8344370860927153, 0.026490066225165563, 0.026490066225165563, 0.8609271523178808, 0.019867549668874173, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.052980132450331126, 0.5496688741721855, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.006622516556291391, 0.033112582781456956, 0.052980132450331126, 0.07947019867549669, 0.11920529801324503, 0.2251655629139073, 0.32450331125827814], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ANAPC5.gap.json

@@ -0,0 +1 @@
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pfam_gap_rates/ANT.gap.json

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pfam_gap_rates/APP_Cu_bd.gap.json

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pfam_gap_rates/APP_N.gap.json

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pfam_gap_rates/ARF7EP_C.gap.json

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pfam_gap_rates/ARGLU.gap.json

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pfam_gap_rates/ASD2.gap.json

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pfam_gap_rates/ATP-synt_B.gap.json

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+{"family": "ATP-synt_B", "n_seqs": 2260, "length": 132, "gap_rates": [0.7163716814159292, 0.28938053097345134, 0.16769911504424778, 0.09513274336283185, 0.061504424778761065, 0.05, 0.03805309734513274, 0.032300884955752215, 0.030530973451327433, 0.03008849557522124, 0.027876106194690265, 0.026991150442477876, 0.02743362831858407, 0.026991150442477876, 0.02654867256637168, 0.02566371681415929, 0.022123893805309734, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.019469026548672566, 0.01902654867256637, 0.017256637168141593, 0.015486725663716814, 0.01327433628318584, 0.01327433628318584, 0.011061946902654867, 0.011061946902654867, 0.010619469026548672, 0.010619469026548672, 0.010619469026548672, 0.009734513274336283, 0.008407079646017699, 0.008407079646017699, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008407079646017699, 0.007964601769911504, 0.007964601769911504, 0.00752212389380531, 0.00752212389380531, 0.008407079646017699, 0.007964601769911504, 0.007079646017699115, 0.006194690265486726, 0.005752212389380531, 0.006194690265486726, 0.005309734513274336, 0.0035398230088495575, 0.0035398230088495575, 0.002654867256637168, 0.002654867256637168, 0.003097345132743363, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.003982300884955752, 0.003982300884955752, 0.004424778761061947, 0.004424778761061947, 0.0035398230088495575, 0.003097345132743363, 0.003097345132743363, 0.0035398230088495575, 0.003097345132743363, 0.003097345132743363, 0.002654867256637168, 0.002654867256637168, 0.002654867256637168, 0.002654867256637168, 0.003097345132743363, 0.003097345132743363, 0.004424778761061947, 0.0048672566371681415, 0.0048672566371681415, 0.005309734513274336, 0.0048672566371681415, 0.0048672566371681415, 0.005752212389380531, 0.006194690265486726, 0.007079646017699115, 0.007079646017699115, 0.007079646017699115, 0.007964601769911504, 0.007079646017699115, 0.008407079646017699, 0.007964601769911504, 0.007964601769911504, 0.008407079646017699, 0.007964601769911504, 0.009292035398230088, 0.010619469026548672, 0.011946902654867256, 0.012389380530973451, 0.012389380530973451, 0.011946902654867256, 0.011504424778761062, 0.011946902654867256, 0.012389380530973451, 0.012831858407079646, 0.012831858407079646, 0.01415929203539823, 0.014601769911504425, 0.014601769911504425, 0.01592920353982301, 0.016814159292035398, 0.018141592920353982, 0.02079646017699115, 0.023451327433628318, 0.030973451327433628, 0.034070796460176994, 0.036283185840707964, 0.0420353982300885, 0.048230088495575224, 0.050442477876106194, 0.05221238938053097, 0.05619469026548673, 0.0584070796460177, 0.06017699115044248, 0.06504424778761062, 0.06902654867256637, 0.07831858407079646, 0.09070796460176991, 0.11946902654867257, 0.19646017699115045, 0.8376106194690266], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ATP-synt_ab_C.gap.json

@@ -0,0 +1 @@
+{"family": "ATP-synt_ab_C", "n_seqs": 2307, "length": 126, "gap_rates": [0.04247941048981361, 0.03424360641525791, 0.0329432162982228, 0.031209362808842653, 0.026441265713047248, 0.02600780234070221, 0.024273948851322065, 0.021673168617251843, 0.021239705244906804, 0.02080624187256177, 0.01907238838318162, 0.018638925010836586, 0.018205461638491547, 0.018205461638491547, 0.017771998266146512, 0.016905071521456438, 0.016905071521456438, 0.016905071521456438, 0.0164716081491114, 0.016038144776766364, 0.014737754659731253, 0.014737754659731253, 0.014737754659731253, 0.014304291287386216, 0.013870827915041179, 0.014304291287386216, 0.014737754659731253, 0.014737754659731253, 0.014304291287386216, 0.014304291287386216, 0.01517121803207629, 0.014737754659731253, 0.01517121803207629, 0.013870827915041179, 0.018205461638491547, 0.018205461638491547, 0.01907238838318162, 0.013870827915041179, 0.012570437798006068, 0.012570437798006068, 0.012570437798006068, 0.012570437798006068, 0.013003901170351105, 0.012136974425661032, 0.011703511053315995, 0.011270047680970958, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010836584308625921, 0.011270047680970958, 0.011703511053315995, 0.018205461638491547, 0.017338534893801473, 0.012136974425661032, 0.012136974425661032, 0.012136974425661032, 0.011270047680970958, 0.011270047680970958, 0.011703511053315995, 0.012136974425661032, 0.012136974425661032, 0.012136974425661032, 0.012570437798006068, 0.013003901170351105, 0.013437364542696142, 0.014737754659731253, 0.014737754659731253, 0.01517121803207629, 0.01517121803207629, 0.01517121803207629, 0.016038144776766364, 0.015604681404421327, 0.01517121803207629, 0.01517121803207629, 0.015604681404421327, 0.015604681404421327, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.018638925010836586, 0.018205461638491547, 0.017771998266146512, 0.017771998266146512, 0.018205461638491547, 0.018638925010836586, 0.024273948851322065, 0.026441265713047248, 0.027308192457737322, 0.030775899436497615, 0.03034243606415258, 0.035977459904638055, 0.03901170351105332, 0.10403120936280884, 0.05114867793671435, 0.04638058084091894, 0.043779800606848725, 0.044213263979193757, 0.045513654096228866, 0.04768097095795405, 0.04984828781967924, 0.05028175119202427, 0.05158214130905939, 0.05244906805374946, 0.13003901170351106, 0.0611183355006502, 0.05938448201127005, 0.0611183355006502, 0.06285218899003034, 0.06631989596879063, 0.12310359774599046, 0.1352405721716515, 0.08539228435197226, 0.0810576506285219, 0.08625921109666233, 0.0905938448201127, 0.09276116168183789, 0.09839618552232336, 0.11400086692674469, 0.14304291287386217, 0.2093628088426528, 0.42436064152579106], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ATPase_gene1.gap.json

@@ -0,0 +1 @@
+{"family": "ATPase_gene1", "n_seqs": 939, "length": 55, "gap_rates": [0.6858359957401491, 0.42705005324813633, 0.28434504792332266, 0.17784877529286475, 0.12673056443024494, 0.07987220447284345, 0.06389776357827476, 0.04898828541001065, 0.039403620873269436, 0.03514376996805112, 0.012779552715654952, 0.007454739084132056, 0.005324813631522897, 0.003194888178913738, 0.002129925452609159, 0.002129925452609159, 0.0010649627263045794, 0.004259850905218318, 0.004259850905218318, 0.004259850905218318, 0.003194888178913738, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.0, 0.03301384451544196, 0.8977635782747604, 0.03727369542066028, 0.07454739084132056, 0.007454739084132056, 0.0010649627263045794, 0.0, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.002129925452609159, 0.002129925452609159, 0.007454739084132056, 0.014909478168264111, 0.019169329073482427, 0.023429179978700747, 0.0308839190628328, 0.039403620873269436, 0.054313099041533544, 0.09691160809371673, 0.2939297124600639, 0.8146964856230032], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/AUX_IAA.gap.json

@@ -0,0 +1 @@
+{"family": "AUX_IAA", "n_seqs": 1250, "length": 310, "gap_rates": [0.8208, 0.804, 0.8016, 0.8008, 0.8, 0.7992, 0.7992, 0.7992, 0.8032, 0.8408, 0.8416, 0.8408, 0.8408, 0.84, 0.8408, 0.8416, 0.844, 0.8488, 0.8504, 0.8288, 0.8632, 0.8584, 0.848, 0.8448, 0.8496, 0.8456, 0.8776, 0.8696, 0.8568, 0.8464, 0.8464, 0.848, 0.8416, 0.8312, 0.8296, 0.8272, 0.8296, 0.8352, 0.8392, 0.8504, 0.8592, 0.8744, 0.9448, 0.8856, 0.8976, 0.896, 0.8744, 0.8592, 0.7848, 0.752, 0.7416, 0.7272, 0.7224, 0.7168, 0.716, 0.712, 0.712, 0.7104, 0.7112, 0.7112, 0.8304, 0.8344, 0.8408, 0.8536, 0.8608, 0.8672, 0.8848, 0.892, 0.9032, 0.9104, 0.916, 0.92, 0.9224, 0.9248, 0.9264, 0.9288, 0.9328, 0.9376, 0.944, 0.9488, 0.9472, 0.94, 0.9344, 0.9304, 0.928, 0.9248, 0.924, 0.92, 0.9184, 0.912, 0.908, 0.8976, 0.8888, 0.872, 0.8624, 0.8552, 0.8496, 0.8392, 0.8304, 0.828, 0.736, 0.824, 0.7872, 0.76, 0.7528, 0.7328, 0.724, 0.7216, 0.7184, 0.7064, 0.708, 0.948, 0.7056, 0.708, 0.7016, 0.708, 0.6192, 0.872, 0.9056, 0.9456, 0.9256, 0.8896, 0.8616, 0.5976, 0.592, 0.5832, 0.5816, 0.5784, 0.5744, 0.5696, 0.5664, 0.5592, 0.5656, 0.5656, 0.5408, 0.5344, 0.5328, 0.5328, 0.5328, 0.5312, 0.5288, 0.528, 0.5264, 0.5256, 0.5248, 0.5248, 0.5248, 0.5256, 0.5248, 0.5232, 0.52, 0.5224, 0.528, 0.5288, 0.5312, 0.5328, 0.5576, 0.5472, 0.5424, 0.6448, 0.6384, 0.588, 0.8736, 0.8848, 0.9008, 0.9088, 0.928, 0.9448, 0.948, 0.9344, 0.9232, 0.9048, 0.8928, 0.88, 0.868, 0.6472, 0.6808, 0.6832, 0.6472, 0.6272, 0.5912, 0.5792, 0.5888, 0.7152, 0.608, 0.8544, 0.8936, 0.912, 0.94, 0.9264, 0.9016, 0.868, 0.848, 0.4552, 0.3176, 0.2304, 0.2056, 0.1872, 0.1848, 0.1832, 0.184, 0.1832, 0.1832, 0.168, 0.1688, 0.1672, 0.2032, 0.2752, 0.1688, 0.1632, 0.1624, 0.1632, 0.1632, 0.1632, 0.164, 0.1648, 0.1648, 0.1648, 0.1656, 0.1656, 0.1664, 0.1664, 0.168, 0.1704, 0.168, 0.1672, 0.1672, 0.1672, 0.1672, 0.168, 0.1688, 0.1688, 0.204, 0.364, 0.424, 0.3128, 0.2992, 0.3952, 0.4088, 0.6384, 0.656, 0.6768, 0.6248, 0.6008, 0.6072, 0.8184, 0.7824, 0.7304, 0.6808, 0.6392, 0.5264, 0.516, 0.4568, 0.4904, 0.5552, 0.5976, 0.948, 0.5632, 0.5, 0.4736, 0.436, 0.352, 0.2728, 0.2032, 0.8528, 0.1608, 0.1464, 0.1448, 0.1432, 0.1432, 0.1424, 0.1424, 0.1424, 0.1416, 0.1416, 0.1416, 0.1416, 0.1432, 0.144, 0.144, 0.144, 0.144, 0.144, 0.1448, 0.1448, 0.1448, 0.1464, 0.1744, 0.1752, 0.1768, 0.1776, 0.1784, 0.1784, 0.1784, 0.1784, 0.1792, 0.18, 0.1808, 0.1896, 0.2304, 0.2712, 0.3032, 0.3184, 0.3696, 0.4936, 0.5776, 0.6152, 0.668, 0.7712, 0.7952], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Abhydrolase_4.gap.json

@@ -0,0 +1 @@
+{"family": "Abhydrolase_4", "n_seqs": 896, "length": 118, "gap_rates": [0.9285714285714286, 0.7924107142857143, 0.7220982142857143, 0.6082589285714286, 0.5703125, 0.5479910714285714, 0.5267857142857143, 0.4921875, 0.45535714285714285, 0.41964285714285715, 0.37276785714285715, 0.33705357142857145, 0.38950892857142855, 0.35825892857142855, 0.9118303571428571, 0.2533482142857143, 0.24330357142857142, 0.21540178571428573, 0.20535714285714285, 0.9352678571428571, 0.9397321428571429, 0.9375, 0.9207589285714286, 0.20089285714285715, 0.203125, 0.19977678571428573, 0.19419642857142858, 0.18861607142857142, 0.18861607142857142, 0.18973214285714285, 0.1875, 0.18303571428571427, 0.17410714285714285, 0.1875, 0.15736607142857142, 0.9464285714285714, 0.140625, 0.8895089285714286, 0.25892857142857145, 0.19642857142857142, 0.9140625, 0.9441964285714286, 0.8191964285714286, 0.10714285714285714, 0.9107142857142857, 0.03794642857142857, 0.03571428571428571, 0.03571428571428571, 0.033482142857142856, 0.030133928571428572, 0.027901785714285716, 0.024553571428571428, 0.0234375, 0.021205357142857144, 0.020089285714285716, 0.017857142857142856, 0.021205357142857144, 0.018973214285714284, 0.017857142857142856, 0.016741071428571428, 0.014508928571428572, 0.016741071428571428, 0.011160714285714286, 0.013392857142857142, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.06138392857142857, 0.9397321428571429, 0.7700892857142857, 0.018973214285714284, 0.011160714285714286, 0.012276785714285714, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.008928571428571428, 0.012276785714285714, 0.013392857142857142, 0.9017857142857143, 0.013392857142857142, 0.017857142857142856, 0.0234375, 0.03236607142857143, 0.056919642857142856, 0.2265625, 0.7890625, 0.14397321428571427, 0.10044642857142858, 0.08482142857142858, 0.08705357142857142, 0.08816964285714286, 0.08705357142857142, 0.09709821428571429, 0.08928571428571429, 0.08928571428571429, 0.09375, 0.09933035714285714, 0.09821428571428571, 0.10379464285714286, 0.10602678571428571, 0.12834821428571427, 0.1484375, 0.15513392857142858, 0.1640625, 0.17857142857142858, 0.19977678571428573, 0.21986607142857142, 0.27566964285714285, 0.29575892857142855, 0.32142857142857145, 0.3515625, 0.3794642857142857], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/Abhydrolase_6.gap.json

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pfam_gap_rates/Abhydrolase_9.gap.json

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pfam_gap_rates/AbiH.gap.json

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pfam_gap_rates/Acetyltransf_16.gap.json

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pfam_gap_rates/Acetyltransf_4.gap.json

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pfam_gap_rates/Acyl-CoA_dh_2.gap.json

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pfam_gap_rates/Adenine_deam_C.gap.json

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pfam_gap_rates/Adenine_glyco.gap.json

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pfam_gap_rates/AdoHcyase.gap.json

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pfam_gap_rates/Agglutinin.gap.json

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pfam_gap_rates/AhpC-TSA.gap.json

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pfam_gap_rates/Ala_racemase_N.gap.json

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pfam_gap_rates/Aldo_ket_red.gap.json

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pfam_gap_rates/Alg6_Alg8.gap.json

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pfam_gap_rates/Alginate_exp.gap.json

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