hepatic_cleaned / README.md
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metadata
pretty_name: Hepatic Cleaned
tags:
  - chemistry
  - pharmacokinetics
  - tabular

Hepatic Cleaned

This dataset contains 17,637 accepted finite scalar measurement children from the versioned canonical-base pipeline. A parent row with several unambiguous measurements can produce several child rows. Rejected, malformed, ambiguous, bounded, range-only, TDC-overlapping, and endpoint-unassignable records are not published here.

Cleaning

The following source columns are replaced in place with validated canonical or lexical normalizations:

  • smilescanonical_smiles
  • metric_typecanonical_endpoint_key
  • assay_systemassay_system_normalized
  • speciesspecies_normalized
  • molecular_formmolecular_form_normalized
  • reported_unitsunit_normalized
  • enzyme_or_pathwayenzyme_or_pathway_normalized
  • qualifying_conditionsqualifying_conditions_normalized
  • reported_valuescalar_value

The public column names on the left are retained; the names on the right identify the validated internal values used to replace them. Columns omitted from this dataset:

  • extraction_id: internal_identifier
  • global_identifier: internal_identifier
  • direction: all_null_in_dataset
  • auc_window: all_null_in_dataset

canonical_endpoint_key is the endpoint identity field. No condition_key is added. species_exact is populated only for explicit, unambiguous species references. Narrative and other source fields without a validated normalization remain source text.