Tools for running hip-hop model based on lammps GCMD simulation, for generating MD simulation datasets (i.e. the other two datasets of mine) lmps-hhm.tar is the default version of running the simulation, while lammps-2Aug2023_gpu.tar is the gpu acceleration version (not fully supported) 4.3_input_template.zip contains the example MD input files for the project
More information about the MD simulation and the 3D genome project please refer to https://github.com/josecar24/polymer_model.git