Hugging Face's logo

Datasets:
jzshared
/
orca32m_cmp

Modalities:
Tabular
Text
Time-series
Formats:
parquet
Size:
10K - 100K
Libraries:
Datasets
Dask
Polars
Dataset card Data Studio Files
xet
Community
1
orca32m_cmp
File size: 2,131 Bytes 
fbcd79b
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
c4ae175
fbcd79b
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
 
{
  "reference_id": "hg38",
  "reference_fasta": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa",
  "reference_memmap": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa.mmap",
  "blacklist_regions": "hg38",
  "num_bins": 250,
  "bin_size": 128000,
  "upper_offset": 2,
  "sequence_length": 32000000,
  "resolution": 128000,
  "position_resolution": 128000,
  "random_shift": 0,
  "random_strand": true,
  "cg": true,
  "validation_holdout": [
    "chr8"
  ],
  "test_holdout": [
    "chr9",
    "chr10"
  ],
  "label_mode": "log_oe",
  "expected_log_path": "data/orca/resources/4DNFI9GMP2J8.rebinned.mcool.expected.res32000.mono.npy",
  "expected_log_resolution": 32000,
  "log_oe_eps": 1e-06,
  "seed": 42,
  "splits": [
    "train",
    "validation",
    "test"
  ],
  "counts": {
    "train": 10000,
    "validation": 883,
    "test": 1022
  },
  "build_stats": {
    "train": {
      "max_samples": 10000,
      "max_attempts": 500000,
      "attempts": 20582,
      "accepted": 10000,
      "skipped_nan": 533,
      "skipped_duplicate_region": 10049,
      "unique_regions_seen": 10533
    },
    "validation": {
      "max_samples": 883,
      "max_attempts": 44150,
      "attempts": 4875,
      "accepted": 883,
      "skipped_nan": 0,
      "skipped_duplicate_region": 3992,
      "unique_regions_seen": 883
    },
    "test": {
      "max_samples": 1022,
      "max_attempts": 51100,
      "attempts": 8374,
      "accepted": 1022,
      "skipped_nan": 327,
      "skipped_duplicate_region": 7025,
      "unique_regions_seen": 1349
    }
  },
  "unique_region_stats": {
    "train": {
      "unique": 10000,
      "duplicates": 0
    },
    "validation": {
      "unique": 883,
      "duplicates": 0
    },
    "test": {
      "unique": 1022,
      "duplicates": 0
    }
  },
  "max_attempts_multiplier": 50,
  "cmp_seq": {
    "sequence_key": "sequence",
    "sequence_format": "string",
    "sequence_encoding": "string",
    "label_mask_key": "mask_ut",
    "reference_fasta": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa",
    "created_at_unix": 1768605467
  }
}