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model = create_model(input_shape=(IMG_WIDTH, IMG_HEIGHT, CHANNEL), n_out=NUM_CLASSES) for layer in model.layers: layer.trainable = False for i in range(-7, 0): model.layers[i].trainable = True metric_list = ["accuracy"] optimizer = optimizers.Adam(lr=WARMUP_LEARNING_RATE) model.compile(optimizer=optimizer, loss="cate...
train_data['HasCabin'] = train_data['Cabin'].notnull().astype('int') test_data['HasCabin'] = test_data['Cabin'].notnull().astype('int' )
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datagen = ImageDataGenerator( rescale=1./255., validation_split=0.25) train_generator = datagen.flow_from_dataframe( dataframe=TRAIN_DF, directory=TRAIN_DIR, x_col=X_COL, y_col=Y_COL, subset="training", batch_size=BATCH_SIZE, seed=SEED, zoom_range=0.2, horizontal_flip=True, class_mode="categorical", preprocessing_fu...
train_data.drop('Cabin', axis=1, inplace=True) test_data.drop('Cabin', axis=1, inplace=True )
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STEP_SIZE_TRAIN=train_generator.n//train_generator.batch_size STEP_SIZE_VALID=valid_generator.n//valid_generator.batch_size STEP_SIZE_TEST=test_generator.n//test_generator.batch_size print(STEP_SIZE_TRAIN) print(STEP_SIZE_VALID) print(STEP_SIZE_TEST )<set_options>
train_data['Embarked'].value_counts()
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gc.collect()<train_model>
full_data = pd.concat([train_data.drop('Survived', axis=1), test_data], ignore_index=True )
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history_warmup = model.fit_generator(generator=train_generator, steps_per_epoch=STEP_SIZE_TRAIN, validation_data=valid_generator, validation_steps=STEP_SIZE_VALID, epochs=WARMUP_EPOCHS, verbose=1 ).history<set_options>
full_data[['Age', 'Pclass', 'Sex', 'Embarked']].groupby(['Pclass', 'Sex', 'Embarked'])['Age'].mean()
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gc.collect()<choose_model_class>
train_data[['Age', 'Pclass', 'Sex', 'Embarked']].groupby(['Pclass', 'Sex', 'Embarked'])['Age'].mean()
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for layer in model.layers: layer.trainable = True es = EarlyStopping(monitor='val_loss', mode='min', patience=ES_PATIENCE, restore_best_weights=True, verbose=1) rlrop = ReduceLROnPlateau(monitor='val_loss', mode='min', patience=RLROP_PATIENCE, factor=DECAY_DROP, min_lr=1e-6, verbose=1) model_checkpoint = ModelCheckpo...
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collected = gc.collect() print("Garbage collector: collected","%d objects." % collected )<train_model>
def get_age(element): age = element[0] pclass = element[1] sex = element[2] embarked = element[3] if(pd.isnull(age)) : temp_data = full_data[(full_data['Pclass'] == pclass)&(full_data['Sex'] == sex)&(full_data['Embarked'] == embarked)] mean_age = temp_data['Age'].mean() return mean_age return age train_data['Age'] = tr...
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history_finetunning = model.fit_generator(generator=train_generator, steps_per_epoch=STEP_SIZE_TRAIN, validation_data=valid_generator, validation_steps=STEP_SIZE_VALID, epochs=EPOCHS_OLD_DATA, callbacks=callback_list, verbose=1 ).history<set_options>
sex = pd.get_dummies(train_data['Sex'], prefix='Sex', drop_first=True) embarked = pd.get_dummies(train_data['Embarked'], prefix='Embarked', drop_first=True) title = pd.get_dummies(train_data['Title'], prefix='Title', drop_first=True) train_data.drop(['Sex', 'Title', 'Embarked'], axis=1, inplace=True) train_data = p...
Titanic - Machine Learning from Disaster
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gc.collect()<load_pretrained>
sex = pd.get_dummies(test_data['Sex'], prefix='Sex', drop_first=True) embarked = pd.get_dummies(test_data['Embarked'], prefix='Embarked', drop_first=True) title = pd.get_dummies(test_data['Title'], prefix='Title', drop_first=True) test_data.drop(['Sex', 'Title', 'Embarked'], axis=1, inplace=True) test_data = pd.con...
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model = load_model('EfficientNetB5_Best_KV.h5' )<define_variables>
y_train = train_data['Survived'] X_train = train_data.drop(['Survived', 'Fare'], axis=1) test_data = test_data.drop(['Fare'], axis=1)
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if test_generator.n%BATCH_SIZE > 0: PREDICTION_STEPS =(test_generator.n//BATCH_SIZE)+ 1 else: PREDICTION_STEPS =(test_generator.n//BATCH_SIZE) print(PREDICTION_STEPS )<define_variables>
kfold = StratifiedKFold(n_splits=5) random_state = 13
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print(test_generator.n) print(test_generator.batch_size) print(STEP_SIZE_TEST) print(BATCH_SIZE )<predict_on_test>
random_forest_classifier = RandomForestClassifier(random_state=random_state) cv_result = cross_val_score(random_forest_classifier, X_train, y_train, cv=kfold, scoring='accuracy') print("CV result mean: ", cv_result.mean() , "CV result std: ", cv_result.std()) cv_result
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test_generator.reset() preds = model.predict_generator(test_generator, steps=PREDICTION_STEPS, verbose=1) predictions = [np.argmax(pred)for pred in preds]<set_options>
xgbClassifier = XGBClassifier(random_state=random_state) cv_result = cross_val_score(xgbClassifier, X_train, y_train, cv=kfold, scoring='accuracy') print("CV result mean: ", cv_result.mean() , "CV result std: ", cv_result.std()) cv_result
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gc.collect()<define_variables>
rf_param_grid = {'max_depth' :[1, 2, 3, 4, 5, 6], 'max_features' :[2, 4, 6, 8, 10], 'min_samples_split':[2, 4, 6, 8, 10], 'bootstrap' :[False, True], 'n_estimators' :[50, 100, 200, 500], 'criterion' :['gini']} grid_search_random_forest_classifier = GridSearchCV(random_forest_classifier, param_grid=rf_param_grid, cv=kfo...
Titanic - Machine Learning from Disaster
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filenames = test_generator.filenames <save_to_csv>
grid_search_random_forest_classifier.best_params_
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results = pd.DataFrame({'id_code':filenames, 'diagnosis':predictions}) results['id_code'] = results['id_code'].map(lambda x: str(x)[:-4]) results.astype({'diagnosis': 'int64'}) results.to_csv('submission.csv',index=False) print(results.head(10))<set_options>
xgb_param_grid={'colsample_bylevel':[0.1, 0.9, 1], 'colsample_bytree' :[0.2, 0.8, 1], 'gamma' :[0.99, 9, 99], 'max_depth' :[2, 4, 6, 8, 10], 'min_child_weight' :[1, 2, 4, 6, 8, 10], 'n_estimators' :[10, 20, 50, 70, 100, 200, 500, 1000]} grid_search_xgboost_classifier = GridSearchCV(xgbClassifier, param_grid=xgb_param_g...
Titanic - Machine Learning from Disaster
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gc.collect()<import_modules>
grid_search_xgboost_classifier.best_params_
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from fastai import * from fastai.vision import * import pandas as pd import matplotlib.pyplot as plt import pandas as pd import os import numpy as np import pandas as pd import glob import matplotlib.pyplot as plt import imagehash import psutil from PIL import Image from joblib import Parallel, delayed import matplotli...
x_tr, x_val, y_tr, y_val = train_test_split(X_train, y_train, test_size=0.3, random_state=random_state )
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base_image_dir = os.path.join('.. ', 'input/aptos2019-blindness-detection/') train_dir = os.path.join(base_image_dir,'train_images/') df = pd.read_csv(os.path.join(base_image_dir, 'train.csv')) df['path'] = df['id_code'].map(lambda x: os.path.join(train_dir,'{}.png'.format(x))) df = df.drop(columns=['id_code']) df ...
random_forest_classifier = RandomForestClassifier(n_estimators=200, max_depth=3, max_features=8, min_samples_split=2, bootstrap=True, random_state=random_state) random_forest_classifier.fit(x_tr, y_tr) predicted_test = random_forest_classifier.predict(x_val) accuracy_random_forest = accuracy_score(y_val, predicted_t...
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bs = 32 sz=140<compute_test_metric>
xgbClassifier = XGBClassifier(max_depth=4,n_estimators=20,gamma=9,colsample_bylevel=0.9,random_state=random_state) xgbClassifier.fit(x_tr, y_tr) predicted_test = xgbClassifier.predict(x_val) accuracy_xgb = accuracy_score(y_val, predicted_test) f1_xgb = f1_score(y_val, predicted_test) print("XGBooster scores: ", ac...
Titanic - Machine Learning from Disaster
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def quadratic_kappa(y_hat, y): return torch.tensor(cohen_kappa_score(torch.argmax(y_hat,1), y, weights='quadratic'),device='cuda:0' )<choose_model_class>
xgbClassifier.fit(X_train, y_train) submission_prediction = xgbClassifier.predict(test_data) submission = pd.DataFrame({ 'PassengerId': test_data['PassengerId'], 'Survived': submission_prediction }) submission_file_path = './titanic_submission.csv' submission.to_csv(submission_file_path, index=False )
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learn= cnn_learner(data, base_arch=models.vgg19_bn, metrics = [accuracy,quadratic_kappa] )<train_model>
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") train_data.head()
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learn.fit_one_cycle(7) learn.lr_find() learn.recorder.plot()<train_model>
test = pd.read_csv("/kaggle/input/titanic/test.csv") test.head()
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learn.data = data =( src.transform(get_transforms(tfms),size=255) .databunch(bs=bs,num_workers=4) .normalize() ) learn.freeze()<train_model>
train_data = train_data.drop(columns = ['Cabin','Name','Ticket','PassengerId'] )
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learn.unfreeze() learn.fit_one_cycle(9,slice(1e-4,1e-3))<load_from_csv>
train_data['Age'].fillna(( train_data['Age'].mean()), inplace=True )
Titanic - Machine Learning from Disaster
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sample_df = pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv') learn.data.add_test(ImageList.from_df(sample_df,'.. /input/aptos2019-blindness-detection/',folder='test_images',suffix='.png')) preds,y = learn.get_preds(DatasetType.Test )<save_to_csv>
train_data[["Parch", "Survived"]].groupby(['Parch'], as_index=False ).mean().sort_values(by='Survived', ascending=False) train_data[["SibSp", "Survived"]].groupby(['SibSp'], as_index=False ).mean().sort_values(by='Survived', ascending=False )
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sample_df.diagnosis = preds.argmax(1) sample_df.head() sample_df.to_csv('submission.csv',index=False )<set_options>
yf = train_data.Survived base_features = ['Parch','SibSp','Age', 'Fare','Pclass'] Xf = train_data[base_features] train_X, val_X, train_y, val_y = train_test_split(Xf, yf, random_state=1) first_model = RandomForestRegressor(n_estimators=21, random_state=1 ).fit(train_X, train_y )
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%reload_ext autoreload %autoreload 2 %matplotlib inline warnings.filterwarnings("ignore") %matplotlib inline <load_pretrained>
train_data['FamilySize'] = train_data['SibSp'] + train_data['Parch'] train_data[['FamilySize', 'Survived']].groupby(['FamilySize'], as_index=False ).agg('mean' )
Titanic - Machine Learning from Disaster
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md_ef = EfficientNet.from_pretrained('efficientnet-b5', num_classes=1) !mkdir models !cp '.. /input/kaggle-public/abcdef.pth' 'models'<feature_engineering>
train_data['IsAlone'] = 0 train_data.loc[train_data['FamilySize'] == 0, 'IsAlone'] = 1 train_data[['IsAlone', 'Survived']].groupby(['IsAlone'], as_index=False ).mean()
Titanic - Machine Learning from Disaster
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bs = 64 tfms = get_transforms(do_flip=True,flip_vert=True )<choose_model_class>
train_data[["Fare", "Survived"]].groupby(['Survived'], as_index=False ).mean().sort_values(by='Survived', ascending=False) train_data.groupby(['Sex','Survived'])[['Fare']].agg(['min','mean','max'] )
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learn.load('abcdef'); opt = OptimizedRounder()<predict_on_test>
y2 = train_data.Survived base_features2 = ['Parch','SibSp','Age', 'Fare','Pclass','Age*Class','FamilySize','IsAlone'] X2 = train_data[base_features2] train_X2, val_X2, train_y2, val_y2 = train_test_split(X2, y2, random_state=1) second_model = RandomForestRegressor(n_estimators=21, random_state=1 ).fit(train_X2, train_...
Titanic - Machine Learning from Disaster
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preds0,y = learn.get_preds(DatasetType.Test )<compute_test_metric>
dummies_Sex = pd.get_dummies(train_data.Sex) dummies_Embarked = pd.get_dummies(train_data.Embarked) train_ready = pd.concat([train_data, dummies_Sex,dummies_Embarked], axis=1) train_ready.head() train_ready = train_ready.drop(columns = ['Sex','Embarked']) train_ready.info()
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preds =(preds0 + preds1 + preds2 + preds3 + preds4)/5<save_to_csv>
train_ready = train_ready.drop(columns = ['Age*Class']) train_ready = train_ready.drop(columns = ['FamilySize'] )
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tst_pred = opt.predict(preds, coef=[0.5, 1.5, 2.5, 3.5]) test_df.diagnosis = tst_pred.astype(int) test_df.to_csv('submission.csv',index=False) print('done' )<import_modules>
for name in train_ready: print(name, "column entropy :", round(stats.entropy(train_ready[name].value_counts(normalize=True), base=2),2))
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import tensorflow import numpy as np import matplotlib.pyplot as plt import pandas as pd import cv2 import os<load_from_csv>
test = test.drop(columns = ['Cabin','Name','Ticket','PassengerId']) test.head()
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train_df = pd.read_csv('.. /input/aptos2019-blindness-detection/train.csv') train_df['id_code'] = train_df['id_code'].apply(lambda x:x+'.png') train_df['diagnosis'] = train_df['diagnosis'].astype(str) test_df = pd.read_csv('.. /input/aptos2019-blindness-detection/test.csv') test_df['id_code'] = test_df['id_code'].a...
test['Age'].fillna(( test['Age'].mean()), inplace=True) test['Fare'].fillna(( test['Fare'].mean()), inplace=True) test.loc[ test['Fare'] <= 7.22, 'Fare'] = 0 test.loc[(test['Fare'] > 7.22)&(test['Fare'] <= 21.96), 'Fare'] = 1 test.loc[(test['Fare'] > 21.96)&(test['Fare'] <= 40.82), 'Fare'] = 2 test.loc[ test['Fare'] ...
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num_classes = train_df['diagnosis'].nunique() TRAIN_DATA_ROOT = './train_images_preprocessed/' TEST_DATA_ROOT = './test_images_preprocessed/' BATCH_SIZE = 16 train_datagen = ImageDataGenerator( rescale = 1/255, rotation_range = 360, horizontal_flip = True, vertical_flip = True, zoom_range = [0.98, 1.02], width_shift_r...
test_dummies_Sex = pd.get_dummies(test.Sex) test_dummies_Embarked = pd.get_dummies(test.Embarked) test_ready = pd.concat([test, test_dummies_Sex,test_dummies_Embarked], axis=1) test_ready.head() test_ready = test_ready.drop(columns = ['Sex','Embarked']) test_ready = test_ready.drop(columns = ['Age*Class']) test_re...
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sklearn_class_weights = class_weight.compute_class_weight( 'balanced', np.unique(train_generator.classes), train_generator.classes) print(sklearn_class_weights )<choose_model_class>
y = train_ready['Survived'].values X = train_ready.drop('Survived',axis=1 ).values X_train, X_test, y_train, y_test = train_test_split(X, y, test_size = 0.3, random_state=21, stratify=y) warnings.filterwarnings("ignore")
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def create_resnet50_model(input_shape, n_out): base_model = ResNet50(weights = None, include_top = False, input_shape = input_shape) base_model.load_weights('.. /input/resnet50/resnet50_weights_tf_dim_ordering_tf_kernels_notop.h5') model = Sequential() model.add(base_model) model.add(GlobalAveragePooling2D()) model...
clfs = [] seed = 3 clfs.append(( "LogReg", Pipeline([("Scaler", StandardScaler()),("LogReg", LogisticRegression())]))) clfs.append(( "XGBClassifier",Pipeline([("Scaler", StandardScaler()),("XGB", XGBClassifier())]))) clfs.append(( "KNN",Pipeline([("Scaler", StandardScaler()),("KNN", KNeighborsClassifier(n_neighbors=8...
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PRETRAINED_MODEL = '.. /input/pretrained_blindness_detector/blindness_detector.h5' if(os.path.exists(PRETRAINED_MODEL)) : print('Restoring model from ' + PRETRAINED_MODEL) model.load_weights(PRETRAINED_MODEL) else: print('No pretrained model found.Using fresh model.') current_epoch = 0<train_model>
scaler = StandardScaler() scaler.fit(X) scaled_features = scaler.transform(X) train_sc = pd.DataFrame(scaled_features) X_csv_test = test_ready.values scaler.fit(X_csv_test) scaled_features_test = scaler.transform(X_csv_test) test_sc = pd.DataFrame(scaled_features_test) scaled_features_test.shape
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<choose_model_class><EOS>
clf = xgb.XGBClassifier(n_estimators=250, random_state=4,bagging_fraction= 0.791787170136272, colsample_bytree= 0.7150126733821065,feature_fraction= 0.6929758008695552,gamma= 0.6716290491053838,learning_rate= 0.030240003246947006,max_depth= 2,min_child_samples= 5,num_leaves= 15,reg_alpha= 0.05822089056228967,reg_lambda...
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<define_variables>
train = pd.read_csv('.. /input/titanic/train.csv') test = pd.read_csv('.. /input/titanic/test.csv') gender_submission = pd.read_csv('.. /input/titanic/gender_submission.csv') data = pd.concat([train, test], sort=False) data['Sex'].replace(['male', 'female'], [0, 1], inplace=True) data['Embarked'].fillna(( 'S'), in...
Titanic - Machine Learning from Disaster
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!rm -rf /kaggle/working/train_images_preprocessed/ print("Preprocessing test images...") !mkdir -p 'test_images_preprocessed' for i, image_id in enumerate(tqdm(test_df['id_code'])) : image = preprocess_image(f'.. /input/aptos2019-blindness-detection/test_images/{image_id}') cv2.imwrite(f'./test_images_preprocessed/{i...
delete_columns = ['Name', 'PassengerId', 'Ticket', 'Cabin'] data.drop(delete_columns, axis=1, inplace=True) train = data[:len(train)] test = data[len(train):] y_train = train['Survived'] X_train = train.drop('Survived', axis=1) X_test = test.drop('Survived', axis=1 )
Titanic - Machine Learning from Disaster
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t_start = time.time()<set_options>
clf = LogisticRegression(penalty='l2', solver='sag', random_state=0 )
Titanic - Machine Learning from Disaster
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%reload_ext autoreload %autoreload 2 %matplotlib inline<import_modules>
clf = RandomForestClassifier(n_estimators=100, max_depth=2, random_state=0 )
Titanic - Machine Learning from Disaster
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from fastai.vision import * from fastai.metrics import error_rate from fastai.callbacks import *<import_modules>
clf.fit(X_train, y_train) y_pred = clf.predict(X_test )
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from functools import partial from sklearn import metrics from collections import Counter<import_modules>
sub = pd.read_csv('.. /input/titanic/gender_submission.csv' )
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import os import PIL import cv2<define_variables>
sub['Survived'] = list(map(int, y_pred)) sub.to_csv('submission_randomforest.csv', index=False) sub.head()
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dat_path = Path('.. /input/aptos2019-blindness-detection') trn_path = Path('.. /input/aptos2019-blindness-detection/train_images') (dat_path,trn_path )<load_from_csv>
X_train, X_valid, y_train, y_valid = \ train_test_split(X_train, y_train, test_size=0.3, random_state=0, stratify=y_train )
Titanic - Machine Learning from Disaster
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train_df = pd.read_csv(dat_path/'train.csv') train_df.shape<train_on_grid>
categorical_features = ['Embarked', 'Pclass', 'Sex']
Titanic - Machine Learning from Disaster
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IMG_SIZE = 512 def _load_format(path, convert_mode, after_open)->Image: image = cv2.imread(path) image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB) image = crop_image_from_gray(image) image = cv2.resize(image,(IMG_SIZE, IMG_SIZE)) image=cv2.addWeighted(image,4, cv2.GaussianBlur(image ,(0,0), 10),-4 ,128) return Image(p...
lgb_train = lgb.Dataset(X_train, y_train, categorical_feature=categorical_features) lgb_eval = lgb.Dataset(X_valid, y_valid, reference=lgb_train, categorical_feature=categorical_features) params = { 'objective': 'binary' } model = lgb.train(params, lgb_train, valid_sets=[lgb_train, lgb_eval], verbose_eval=10, num_boo...
Titanic - Machine Learning from Disaster
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tfms = get_transforms(do_flip=True, flip_vert=True, max_rotate=0.10, max_zoom=1.3, max_warp=0.0, max_lighting=0.2 )<define_variables>
y_pred =(y_pred > 0.5 ).astype(int) y_pred[:10]
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<create_dataframe><EOS>
sub['Survived'] = y_pred sub.to_csv('submission_lightgbm.csv', index=False) sub.head()
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<choose_model_class>
warnings.filterwarnings('ignore') pd.options.display.max_columns = 40
Titanic - Machine Learning from Disaster
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kappa = KappaScore() kappa.weights = "quadratic"<choose_model_class>
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") test_data = pd.read_csv("/kaggle/input/titanic/test.csv" )
Titanic - Machine Learning from Disaster
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learn = cnn_learner(data, models.resnet50, metrics=[error_rate, kappa] )<train_model>
full_dataset = pd.concat([train_data, test_data]) full_dataset.head()
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learn.fit_one_cycle(1 )<train_model>
class KnownCabinTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- KnownCabin transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.Cabin.fillna(0, inplace=True) X["KnownCabin"] = 0 X.loc[X.Cabin != 0, 'KnownCabin'] = 1 print("- KnownCabin transfor...
Titanic - Machine Learning from Disaster
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learn.fit_one_cycle(1) <train_model>
class TitleTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- Title transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X['Title'] = X.Name.str.extract('([A-Za-z]+)\.', expand=False) X['Title'] = X['Title'].replace(['Lady', 'Countess','Capt', 'Col'...
Titanic - Machine Learning from Disaster
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learn.unfreeze() learn.fit_one_cycle(9, max_lr=slice(1e-4,1e-3))<define_variables>
class MissingFareTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- MissingFare transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.loc[(X.Pclass == 1)&(X.Fare.isnull()), 'Fare'] = X.loc[X.Pclass == 1]["Fare"].median() X.loc[(X.Pclass == 2)&(X.Far...
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learn.model_dir = Path('/kaggle/working/' )<save_model>
class AgeStatusTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeStatus transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X["AgeStatus"] = "known" X.loc[(X["Age"] > 1)&(( X["Age"]*2)%2 != 0), "AgeStatus"] = "estimated" X.loc[X["Age"].isnull() ...
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learn.save('/kaggle/working/FastAI_APTOS_epoch_11') learn.export('/kaggle/working/FastAI_APTOS_epoch_11.pkl' )<load_from_csv>
class TicketGroupingTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- TicketGrouping transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): cat_feature = ['Ticket'] count_enc = ce.CountEncoder(cols=cat_feature) count_enc.fit(X[cat_feature]) grouping...
Titanic - Machine Learning from Disaster
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test_df = pd.read_csv(dat_path/'sample_submission.csv' )<create_dataframe>
class AgeGuessingTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeGuessing transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.loc[(X.Age.isnull() == True)&(X.Title_Master == 1), "Age"] = X.loc[X.Title_Master == 1]["Age"].median() X.loc[(X.Ag...
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learn.data.add_test(ImageList.from_df(test_df,dat_path,folder='test_images',suffix='.png'))<init_hyperparams>
class AgeBinningTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeBinning transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): self.bins = [0, 2, 16, 25, 40, 50, np.inf] self.age_cat = ["0_2", "2_16", "16_25", "25_40", "30_50", "50+"] X["AgeBins"...
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tta_params = {'beta':0.12, 'scale':1.0}<predict_on_test>
custom_pipeline = Pipeline([ ("cabin_trans", KnownCabinTransformer()), ("title_trans", TitleTransformer()), ("hypo_missing_trans", HypotheticalMissingsTransformer()), ("missing_fare_trans", MissingFareTransformer()), ("embarked_trans", EmbarkedTransformer()), ("gender_trans", GenderTransformer()), ("class_trans"...
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preds,y = learn.get_preds(DatasetType.Test) preds,y = learn.TTA(ds_type=DatasetType.Test, **tta_params )<prepare_output>
full_dataset["TS_Tragedy"] = "null" i = 0 unique_tickets_subset = full_dataset.loc[full_dataset["Ticket_grouping"] > 2]["Ticket"].unique() while i < len(unique_tickets_subset): subset = full_dataset.loc[full_dataset.Ticket == unique_tickets_subset[i]] try: ratio = len(subset.loc[subset["Survived"] == 0])/ len(subset.lo...
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test_df.diagnosis = preds.argmax(1) test_df.head()<save_to_csv>
full_dataset.set_index(full_dataset.PassengerId, verify_integrity = True, inplace=True) full_dataset.tail()
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test_df.to_csv('submission.csv',index=False )<import_modules>
X_train = full_dataset.loc[full_dataset.Survived.isnull() == False] y_train = X_train["Survived"].astype(int) X_test = full_dataset.loc[full_dataset.Survived.isnull() ] useless_features = ["PassengerId", "Survived", "Name", "Age", "Ticket", "Fare", "Cabin", "AgeBins"] X_train.drop(useless_features, axis=1, inplace=Tru...
Titanic - Machine Learning from Disaster
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from random import randint import tensorflow as tf import json import os from PIL import Image from glob import glob from zipfile import ZipFile import pandas as pd from keras.optimizers import Adam from keras.preprocessing.image import ImageDataGenerator from keras.callbacks import ModelCheckpoint, Callback, EarlyStop...
scaler = StandardScaler() X_train_scaled = pd.DataFrame(scaler.fit_transform(X_train[["SibSp","Parch","FamilySize","Ticket_grouping"]]), columns=["sc_SibSp","sc_Parch","sc_FamilySize","sc_Ticket_grouping"], index=X_train.index) X_test_scaled = pd.DataFrame(scaler.fit_transform(X_test[["SibSp","Parch","FamilySize","Tic...
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def process_csv(dataframe: pd.DataFrame, image_column_name: str, label_column_name: str, folder_with_images: str)-> pd.DataFrame: dataframe[image_column_name] = dataframe[image_column_name].apply( lambda x: f"{folder_with_images}{x}.png") dataframe[label_column_name] = dataframe[label_column_name].astype('str') re...
from sklearn.ensemble import GradientBoostingClassifier from sklearn.ensemble import RandomForestClassifier from sklearn.neighbors import KNeighborsClassifier from sklearn.svm import SVC import xgboost as xgb import lightgbm as lgb from sklearn.linear_model import LogisticRegression from sklearn.ensemble import VotingC...
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train_datagen = ImageDataGenerator(rescale=1./ 255, rotation_range=15, width_shift_range=0.1, height_shift_range=0.1, shear_range=0.01, zoom_range=[0.9, 1.25], horizontal_flip=True, vertical_flip=True, fill_mode='reflect', data_format='channels_last', brightness_range=[0.5, 1.5], validation_split=0.3 )<load_from_csv>
param_grid = [ {'n_neighbors':[2,3,4,5,6,7,8], 'weights':['uniform', 'distance'], 'n_jobs':[-1] } ] neigh = KNeighborsClassifier() grid_search = GridSearchCV(neigh, param_grid, cv=5, scoring='accuracy') grid_search.fit(X_train, y_train) grid_search.best_params_
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train_csv = pd.read_csv("/kaggle/input/aptos2019-blindness-detection/train.csv") train_csv = process_csv( dataframe=train_csv, image_column_name="id_code", label_column_name="diagnosis", folder_with_images="/kaggle/dataset_with_ben/" )<create_dataframe>
neigh = KNeighborsClassifier(n_neighbors = 5, weights = 'uniform') neigh.fit(X_train, y_train) scores = cross_val_score(neigh, X_train, y_train, scoring="accuracy", cv=10) print(scores.mean() )
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train_generator = train_datagen.flow_from_dataframe( dataframe=train_csv, x_col="id_code", y_col="diagnosis", subset="training", batch_size=32, target_size=(299, 299)) val_generator = train_datagen.flow_from_dataframe( dataframe=train_csv, x_col="id_code", y_col="diagnosis", subset="validation", batch_size=32, target...
log_reg = LogisticRegression(C = 0.001, penalty='none') log_reg.fit(X_train, y_train) scores = cross_val_score(log_reg, X_train, y_train, scoring="accuracy", cv=10) print("Logistic Regression mean score : ", scores.mean()) forest_clf = RandomForestClassifier(max_depth = 6, min_samples_leaf=1, min_samples_split=2,...
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class RAdam(Optimizer): def __init__(self, lr, beta1=0.9, beta2=0.99, decay=0, **kwargs): super(RAdam, self ).__init__(**kwargs) with K.name_scope(self.__class__.__name__): self.lr = K.variable(lr) self._beta1 = K.variable(beta1, dtype="float32") self._beta2 = K.variable(beta2, dtype="float32") self._max_sma_length...
voting_clf = VotingClassifier(estimators=[('gbc', gbc),('xgb', xgb_clf),('forest', forest_clf),('svc', svc),('lrc', log_reg),('knc', neigh)], voting='hard') voting_clf.fit(X_train, y_train) scores = cross_val_score(voting_clf, X_train, y_train, scoring="accuracy", cv=10) print(scores.mean() )
Titanic - Machine Learning from Disaster
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sys.path.append(os.path.abspath('.. /input/kerasefficientnetsmaster/keras-efficientnets-master/keras-efficientnets-master/')) def create_model() : input_tensor = Input(( 299, 299, 3)) outputs = [] effnet = EfficientNetB7(input_shape=(299,299,3), weights=sys.path.append(os.path.abspath('/kaggle/input/efficientnetb0b7-ke...
preds = voting_clf.predict(X_test) output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': preds}) output.to_csv("submission.csv", index=False) output.head()
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start_lr = 1e-10 end_lr = 1<compute_train_metric>
warnings.filterwarnings('ignore') pd.options.display.max_columns = 40
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def kappa_loss(y_pred, y_true, y_pow=2, eps=1e-10, N=5, bsize=256, name='kappa'): with tf.name_scope(name): y_true = tf.to_float(y_true) repeat_op = tf.to_float(tf.tile(tf.reshape(tf.range(0, N), [N, 1]), [1, N])) repeat_op_sq = tf.square(( repeat_op - tf.transpose(repeat_op))) weights = repeat_op_sq / tf.to_float(...
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") test_data = pd.read_csv("/kaggle/input/titanic/test.csv" )
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reduce_lr = ReduceLROnPlateau(monitor='val_acc', factor=0.2, patience=5, min_lr=1e-5 )<choose_model_class>
full_dataset = pd.concat([train_data, test_data]) full_dataset.head()
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callbacks = [ ModelCheckpoint( "best_weights.hdf5", monitor='val_acc', verbose=1, save_best_only=True, save_weights_only=True), EarlyStopping(monitor='val_acc', patience=5), reduce_lr ]<train_model>
class KnownCabinTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- KnownCabin transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.Cabin.fillna(0, inplace=True) X["KnownCabin"] = 0 X.loc[X.Cabin != 0, 'KnownCabin'] = 1 print("- KnownCabin transfor...
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model = create_model() model.compile(optimizer=Adam(1e-4), loss="categorical_crossentropy", metrics=["accuracy"]) model.fit_generator(generator=train_generator, steps_per_epoch=len(train_generator), validation_data=val_generator, validation_steps=len(val_generator), epochs=10, callbacks=callbacks )<normalization>
class TitleTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- Title transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X['Title'] = X.Name.str.extract('([A-Za-z]+)\.', expand=False) X['Title'] = X['Title'].replace(['Lady', 'Countess','Capt', 'Col'...
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def test_time_augmentation(image, network_model): datagen = ImageDataGenerator() all_images = np.expand_dims(image, axis=0) flip_horizontal_image = np.expand_dims(datagen.apply_transform( x=image, transform_parameters={"flip_horizontal": True}), axis=0) all_images = np.append(all_images, flip_horizontal_image, axis=...
class MissingFareTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- MissingFare transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.loc[(X.Pclass == 1)&(X.Fare.isnull()), 'Fare'] = X.loc[X.Pclass == 1]["Fare"].median() X.loc[(X.Pclass == 2)&(X.Far...
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model.load_weights("best_weights.hdf5" )<save_to_csv>
class AgeStatusTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeStatus transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X["AgeStatus"] = "known" X.loc[(X["Age"] > 1)&(( X["Age"]*2)%2 != 0), "AgeStatus"] = "estimated" X.loc[X["Age"].isnull() ...
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test_csv = pd.read_csv("/kaggle/input/aptos2019-blindness-detection/test.csv") predicted_csv = pd.DataFrame(columns=["id_code", "diagnosis"]) for id_code in test_csv["id_code"]: filename = f"/kaggle/input/aptos2019-blindness-detection/test_images/{id_code}.png" img = imread(filename) img = cv2.resize(img, dsize=(299...
class TicketGroupingTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- TicketGrouping transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): cat_feature = ['Ticket'] count_enc = ce.CountEncoder(cols=cat_feature) count_enc.fit(X[cat_feature]) grouping...
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sys.path.append(os.path.abspath('.. /input/efficientnet/efficientnet-master/efficientnet-master/')) def create_effnetB5_model(input_shape, n_out): model = Sequential() base_model = EfficientNetB5(weights = None, include_top = False, input_shape = input_shape) base_model.name = 'base_model' model.add(base_model) model...
class AgeGuessingTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeGuessing transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): X.loc[(X.Age.isnull() == True)&(X.Title_Master == 1), "Age"] = X.loc[X.Title_Master == 1]["Age"].median() X.loc[(X.Ag...
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PRETRAINED_MODEL = '.. /input/efficientnetb5-blindness-detector/blindness_detector_best_qwk.h5' IMAGE_HEIGHT = 340 IMAGE_WIDTH = 340 num_classes = 5 class_text = ['Normal', 'Mild', 'Moderate', 'Severe', 'Proliferative'] print('Creating model...') model = create_effnetB5_model(input_shape =(IMAGE_HEIGHT, IMAGE_WIDTH, 3...
class AgeBinningTransformer(BaseEstimator, TransformerMixin): def __init__(self): print("- AgeBinning transformer initiated -") def fit(self, X, y=None): return self def transform(self, X, y=None): self.bins = [0, 2, 16, 25, 40, 50, np.inf] self.age_cat = ["0_2", "2_16", "16_25", "25_40", "30_50", "50+"] X["AgeBins"...
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submit = pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv') predicted = [] print("Making predictions...") for i, name in tqdm(enumerate(submit['id_code'])) : path = os.path.join('.. /input/aptos2019-blindness-detection/test_images/', name + '.png') image = cv2.imread(path) image = process_...
custom_pipeline = Pipeline([ ("cabin_trans", KnownCabinTransformer()), ("title_trans", TitleTransformer()), ("hypo_missing_trans", HypotheticalMissingsTransformer()), ("missing_fare_trans", MissingFareTransformer()), ("embarked_trans", EmbarkedTransformer()), ("gender_trans", GenderTransformer()), ("class_trans"...
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submit['diagnosis'] = predicted submit.to_csv('submission.csv', index = False) submit.head(10 )<set_options>
full_dataset["TS_Tragedy"] = "null" i = 0 unique_tickets_subset = full_dataset.loc[full_dataset["Ticket_grouping"] > 2]["Ticket"].unique() while i < len(unique_tickets_subset): subset = full_dataset.loc[full_dataset.Ticket == unique_tickets_subset[i]] try: ratio = len(subset.loc[subset["Survived"] == 0])/ len(subset.lo...
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%reload_ext autoreload %autoreload 2 %matplotlib inline<import_modules>
full_dataset.set_index(full_dataset.PassengerId, verify_integrity = True, inplace=True) full_dataset.tail()
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from fastai import * from fastai.vision import * import pandas as pd import matplotlib.pyplot as plt import numpy as np import os import scipy as sp from functools import partial from sklearn import metrics from collections import Counter from fastai.callbacks import * import PIL import cv2<set_options>
X_train = full_dataset.loc[full_dataset.Survived.isnull() == False] y_train = X_train["Survived"].astype(int) X_test = full_dataset.loc[full_dataset.Survived.isnull() ] useless_features = ["PassengerId", "Survived", "Name", "Age", "Ticket", "Fare", "Cabin", "AgeBins"] X_train.drop(useless_features, axis=1, inplace=Tru...
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def seed_everything(seed=1358): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True seed_everything()<define_variables>
scaler = StandardScaler() X_train_scaled = pd.DataFrame(scaler.fit_transform(X_train[["SibSp","Parch","FamilySize","Ticket_grouping"]]), columns=["sc_SibSp","sc_Parch","sc_FamilySize","sc_Ticket_grouping"], index=X_train.index) X_test_scaled = pd.DataFrame(scaler.fit_transform(X_test[["SibSp","Parch","FamilySize","Tic...
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PATH = Path('.. /input/aptos2019-blindness-detection' )<load_from_csv>
from sklearn.ensemble import GradientBoostingClassifier from sklearn.ensemble import RandomForestClassifier from sklearn.neighbors import KNeighborsClassifier from sklearn.svm import SVC import xgboost as xgb import lightgbm as lgb from sklearn.linear_model import LogisticRegression from sklearn.ensemble import VotingC...
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df = pd.read_csv(PATH/'train.csv') df.head()<count_values>
param_grid = [ {'n_neighbors':[2,3,4,5,6,7,8], 'weights':['uniform', 'distance'], 'n_jobs':[-1] } ] neigh = KNeighborsClassifier() grid_search = GridSearchCV(neigh, param_grid, cv=5, scoring='accuracy') grid_search.fit(X_train, y_train) grid_search.best_params_
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df.diagnosis.value_counts()<feature_engineering>
neigh = KNeighborsClassifier(n_neighbors = 5, weights = 'uniform') neigh.fit(X_train, y_train) scores = cross_val_score(neigh, X_train, y_train, scoring="accuracy", cv=10) print(scores.mean() )
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tfms = get_transforms(do_flip=True, flip_vert=True, max_rotate=0.10, max_zoom=1.3, max_warp=0.0, max_lighting=0.2 )<normalization>
log_reg = LogisticRegression(C = 0.001, penalty='none') log_reg.fit(X_train, y_train) scores = cross_val_score(log_reg, X_train, y_train, scoring="accuracy", cv=10) print("Logistic Regression mean score : ", scores.mean()) forest_clf = RandomForestClassifier(max_depth = 6, min_samples_leaf=1, min_samples_split=2,...
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data =( src.transform(tfms,size=128) .databunch() .normalize(imagenet_stats) ) data<compute_train_metric>
voting_clf = VotingClassifier(estimators=[('gbc', gbc),('xgb', xgb_clf),('forest', forest_clf),('svc', svc),('lrc', log_reg),('knc', neigh)], voting='hard') voting_clf.fit(X_train, y_train) scores = cross_val_score(voting_clf, X_train, y_train, scoring="accuracy", cv=10) print(scores.mean() )
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def quadratic_kappa(y_hat, y): return torch.tensor(cohen_kappa_score(torch.round(y_hat), y, weights='quadratic'),device='cuda:0') learn = cnn_learner(data, base_arch=models.resnet50 ,metrics=[quadratic_kappa],model_dir='/kaggle',pretrained=True )<find_best_params>
preds = voting_clf.predict(X_test) output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': preds}) output.to_csv("submission.csv", index=False) output.head()
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learn.lr_find() learn.recorder.plot()<train_model>
%matplotlib inline
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lr = 1e-2 learn.fit_one_cycle(3, lr )<normalization>
train=pd.read_csv(".. /input/train.csv") test=pd.read_csv(".. /input/test.csv" )
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learn.data = data =( src.transform(tfms,size=224) .databunch() .normalize(imagenet_stats) ) learn.lr_find() learn.recorder.plot()<train_model>
data = [["Variable","Definition","Datatype","Key"], ["Passenger ID","Index for the observational unit","Int", "1-1309"], ["Pclass","boarding class of the observational unit","Int", "1-3"], ["Name","Name of observational unit, including the title","String","Multiple"], ["Sex","Gender of the observational unit","String",...
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lr = 1e-2 learn.fit_one_cycle(20, lr )<find_best_params>
train.isnull().any()
Titanic - Machine Learning from Disaster