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print('RMSE insample', np.sqrt(np.mean(( np.array(y_pred)- np.array(pred[1])) **2)) )<count_unique_values>
train = pd.read_csv('/kaggle/input/titanic/train.csv') test = pd.read_csv('/kaggle/input/titanic/test.csv' )
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np.unique(y_pred, return_counts=True )<save_to_csv>
for col in train.columns: print(col, str(round(100* train[col].isnull().sum() / len(train), 2)) + '%' )
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pred = learn.get_preds(ds_type=DatasetType.Test) y_pred = [int(np.argmax(row)) for row in pred[0]] test_csv['AdoptionSpeed'] = y_pred test_csv[['PetID', 'AdoptionSpeed']].to_csv('submission.csv', index=False )<set_options>
train['LastName'] = train['Name'].str.split(',', expand=True)[0] test['LastName'] = test['Name'].str.split(',', expand=True)[0] ds = pd.concat([train, test]) sur = list() died = list() for index, row in ds.iterrows() : s = ds[(ds['LastName']==row['LastName'])&(ds['Survived']==1)] d = ds[(ds['LastName']==row['LastName'...
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%matplotlib inline pd.options.display.max_rows = 128 pd.options.display.max_columns = 128 plt.rcParams['figure.figsize'] =(12, 9) plt.style.use('ggplot' )<define_variables>
y = train['Survived'] X = train.drop(['Survived', 'Cabin_T'], axis=1) X_test = test.copy() X, X_val, y, y_val = train_test_split(X, y, random_state=0, test_size=0.2, shuffle=False )
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Run_Tabular = True Run_Metadata = False Run_Sentiment = False Run_Metadata_AvgSum = False Run_Sentiment_AvgSum = False Run_Breed_Map = False Run_Rescuer_Cnt = True Run_Text_Features = False<load_from_csv>
class Optimizer: def __init__(self, metric, trials=30): self.metric = metric self.trials = trials self.sampler = TPESampler(seed=666) def objective(self, trial): model = create_model(trial) model.fit(X, y) preds = model.predict(X_val) if self.metric == 'acc': return accuracy_score(y_val, preds) else: return f1_sco...
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train = pd.read_csv('.. /input/train/train.csv') test = pd.read_csv('.. /input/test/test.csv') sample_submission = pd.read_csv('.. /input/test/sample_submission.csv' )<load_from_csv>
rf = RandomForestClassifier(random_state=666) rf.fit(X, y) preds = rf.predict(X_val) print('Random Forest accuracy: ', accuracy_score(y_val, preds)) print('Random Forest f1-score: ', f1_score(y_val, preds)) def create_model(trial): max_depth = trial.suggest_int("max_depth", 2, 6) n_estimators = trial.suggest_int("n...
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labels_breed = pd.read_csv('.. /input/breed_labels.csv') labels_state = pd.read_csv('.. /input/color_labels.csv') labels_color = pd.read_csv('.. /input/state_labels.csv' )<define_variables>
xgb = XGBClassifier(random_state=666) xgb.fit(X, y) preds = xgb.predict(X_val) print('XGBoost accuracy: ', accuracy_score(y_val, preds)) print('XGBoost f1-score: ', f1_score(y_val, preds)) def create_model(trial): max_depth = trial.suggest_int("max_depth", 2, 6) n_estimators = trial.suggest_int("n_estimators", 1, 1...
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train_image_files = sorted(glob.glob('.. /input/train_images/*.jpg')) train_metadata_files = sorted(glob.glob('.. /input/train_metadata/*.json')) train_sentiment_files = sorted(glob.glob('.. /input/train_sentiment/*.json')) print('num of train images files: {}'.format(len(train_image_files))) print('num of train metad...
lgb = LGBMClassifier(random_state=666) lgb.fit(X, y) preds = lgb.predict(X_val) print('LightGBM accuracy: ', accuracy_score(y_val, preds)) print('LightGBM f1-score: ', f1_score(y_val, preds)) def create_model(trial): max_depth = trial.suggest_int("max_depth", 2, 6) n_estimators = trial.suggest_int("n_estimators", 1...
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test_df_ids = test[['PetID']] print(test_df_ids.shape) test_df_imgs = pd.DataFrame(test_image_files) test_df_imgs.columns = ['image_filename'] test_imgs_pets = test_df_imgs['image_filename'].apply(lambda x: x.split('/')[-1].split('-')[0]) test_df_imgs = test_df_imgs.assign(PetID=test_imgs_pets) print(len(test_imgs_...
lr = LogisticRegression(random_state=666) lr.fit(X, y) preds = lr.predict(X_val) print('Logistic Regression: ', accuracy_score(y_val, preds)) print('Logistic Regression f1-score: ', f1_score(y_val, preds))
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class PetFinderParser(object): def __init__(self, debug=False): self.debug = debug self.sentence_sep = ' ' self.extract_sentiment_text = False def open_metadata_file(self, filename): with open(filename, 'r', encoding="utf8")as f: metadata_file = json.load(f) return metadata_file def open_sentiment_file(self, filenam...
dt = DecisionTreeClassifier(random_state=666) dt.fit(X, y) preds = dt.predict(X_val) print('Decision Tree accuracy: ', accuracy_score(y_val, preds)) print('Decision Tree f1-score: ', f1_score(y_val, preds)) def create_model(trial): max_depth = trial.suggest_int("max_depth", 2, 6) min_samples_split = trial.suggest_i...
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train_proc = train.copy() if Run_Sentiment_AvgSum == True: train_proc = train_proc.merge( train_sentiment_gr, how='left', on='PetID') train_proc = train_proc.merge( train_sentiment_desc, how='left', on='PetID') if Run_Metadata_AvgSum == True: train_proc = train_proc.merge( train_metadata_gr, how='left', on='PetID'...
bc = BaggingClassifier(random_state=666) bc.fit(X, y) preds = bc.predict(X_val) print('Bagging Classifier accuracy: ', accuracy_score(y_val, preds)) print('Bagging Classifier f1-score: ', f1_score(y_val, preds)) def create_model(trial): n_estimators = trial.suggest_int('n_estimators', 2, 200) max_samples = trial.su...
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train_breed_main = train_proc[['Breed1']].merge( labels_breed, how='left', left_on='Breed1', right_on='BreedID', suffixes=('', '_main_breed')) train_breed_main = train_breed_main.iloc[:, 2:] train_breed_main = train_breed_main.add_prefix('main_breed_') train_breed_second = train_proc[['Breed2']].merge( labels_breed,...
knn = KNeighborsClassifier() knn.fit(X, y) preds = knn.predict(X_val) print('KNN accuracy: ', accuracy_score(y_val, preds)) print('KNN f1-score: ', f1_score(y_val, preds)) sampler = TPESampler(seed=0) def create_model(trial): n_neighbors = trial.suggest_int("n_neighbors", 2, 25) model = KNeighborsClassifier(n_neigh...
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X = pd.concat([train_proc, test_proc], ignore_index=True, sort=False) print('NaN structure: {}'.format(np.sum(pd.isnull(X))))<define_variables>
abc = AdaBoostClassifier(random_state=666) abc.fit(X, y) preds = abc.predict(X_val) print('AdaBoost accuracy: ', accuracy_score(y_val, preds)) print('AdaBoost f1-score: ', f1_score(y_val, preds)) def create_model(trial): n_estimators = trial.suggest_int("n_estimators", 2, 150) learning_rate = trial.suggest_uniform(...
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column_types = X.dtypes int_cols = column_types[column_types == 'int'] float_cols = column_types[column_types == 'float'] cat_cols = column_types[column_types == 'object'] print('\tinteger columns: {}'.format(int_cols)) print(' \tfloat columns: {}'.format(float_cols)) print(' \tto encode categorical columns: {}'.format...
et = ExtraTreesClassifier(random_state=666) et.fit(X, y) preds = et.predict(X_val) print('ExtraTreesClassifier accuracy: ', accuracy_score(y_val, preds)) print('ExtraTreesClassifier f1-score: ', f1_score(y_val, preds)) def create_model(trial): n_estimators = trial.suggest_int("n_estimators", 2, 150) max_depth = tri...
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X_temp = X.copy() text_columns = ['Description'] if Run_Metadata_AvgSum==True: text_columns += ['metadata_annots_top_desc'] if Run_Sentiment_AvgSum==True: text_columns += ['sentiment_entities'] categorical_columns = [] if Run_Breed_Map == True: categorical_columns = ['main_breed_BreedName', 'second_breed_BreedName'] to...
model = SuperLearner( folds=5, random_state=666 ) model.add( [ bc, lgb, xgb, rf, dt, knn ] ) model.add_meta( LogisticRegression() ) model.fit(X, y) preds = model.predict(X_val) print('SuperLearner accuracy: ', accuracy_score(y_val, preds)) print('SuperLearner f1-score: ', f1_score(y_val, preds))
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rescuer_count = X.groupby(['RescuerID'])['PetID'].count().reset_index() rescuer_count.columns = ['RescuerID', 'RescuerID_COUNT'] if Run_Rescuer_Cnt == True: X_temp = X_temp.merge(rescuer_count, how='left', on='RescuerID' )<normalization>
mdict = { 'RF': RandomForestClassifier(random_state=666), 'XGB': XGBClassifier(random_state=666), 'LGBM': LGBMClassifier(random_state=666), 'DT': DecisionTreeClassifier(random_state=666), 'KNN': KNeighborsClassifier() , 'BC': BaggingClassifier(random_state=666), 'OARF': RandomForestClassifier(**rf_acc_params), 'OFRF': ...
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for i in categorical_columns: X_temp.loc[:, i] = pd.factorize(X_temp.loc[:, i])[0]<data_type_conversions>
def create_model(trial): model_names = list() models_list = [ 'RF', 'XGB', 'LGBM', 'DT', 'KNN', 'BC', 'OARF', 'OFRF', 'OAXGB', 'OFXGB', 'OALGBM', 'OFLGBM', 'OADT', 'OFDT', 'OAKNN', 'OFKNN', 'OABC', 'OFBC', 'OAABC', 'OFABC', 'OAET', 'OFET', 'LR', 'ABC', 'SGD', 'ET', 'MLP', 'GB', 'RDG', 'PCP', 'PAC' ] head_list = [ 'RF',...
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X_text = X_temp[text_columns] for i in X_text.columns: X_text.loc[:, i] = X_text.loc[:, i].fillna('<MISSING>' )<feature_engineering>
model = SuperLearner( folds=folds, random_state=666 ) models = [ mdict[item] for item in result ] model.add(models) model.add_meta(mdict[head]) model.fit(X, y) preds = model.predict(X_val) print('Optimized SuperLearner accuracy: ', accuracy_score(y_val, preds)) print('Optimized SuperLearner f1-score: ', f1_score...
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n_components = 7 text_features = [] for i in X_text.columns: print('generating features from: {}'.format(i)) svd_ = TruncatedSVD( n_components=n_components, random_state=1337) nmf_ = NMF( n_components=n_components, random_state=1337) tfidf_col = TfidfVectorizer().fit_transform(X_text.loc[:, i].values) svd_col = sv...
preds = model.predict(X_test) preds = preds.astype(np.int16 )
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np.sum(pd.isnull(X_train))<count_missing_values>
submission = pd.read_csv('.. /input/titanic/gender_submission.csv') submission['Survived'] = preds submission.to_csv('submission.csv', index=False )
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np.sum(pd.isnull(X_test))<import_modules>
sns.set() train = pd.read_csv('/kaggle/input/titanic/train.csv') test = pd.read_csv('/kaggle/input/titanic/test.csv' )
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def confusion_matrix(rater_a, rater_b, min_rating=None, max_rating=None): assert(len(rater_a)== len(rater_b)) if min_rating is None: min_rating = min(rater_a + rater_b) if max_rating is None: max_rating = max(rater_a + rater_b) num_ratings = int(max_rating - min_rating + 1) conf_mat = [[0 for i in range(num_rating...
print('Out of 891 entries, cabin is missing 687 so I'm droping it, also droping ticket and embarked because it isnt relevant') train.isna().sum()
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params = {'application': 'regression', 'boosting': 'gbdt', 'metric': 'rmse', 'num_leaves': 70, 'max_depth': 9, 'learning_rate': 0.01, 'bagging_fraction': 0.85, 'feature_fraction': 0.8, 'min_split_gain': 0.02, 'min_child_samples': 150, 'min_child_weight': 0.02, 'lambda_l2': 0.0475, 'verbosity': -1, 'data_random_seed': 1...
train = train.drop(['Cabin', 'Ticket', 'Embarked'], axis=1) test = test.drop(['Cabin', 'Ticket', 'Embarked'], axis=1 )
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kfold = StratifiedKFold(n_splits=n_splits, random_state=1337) oof_train = np.zeros(( X_train.shape[0])) oof_test = np.zeros(( X_test.shape[0], n_splits)) i = 0 for train_index, valid_index in kfold.split(X_train, X_train['AdoptionSpeed'].values): X_tr = X_train.iloc[train_index, :] X_val = X_train.iloc[valid_index, :]...
print('filling age with age mean') train.isna().sum()
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optR = OptimizedRounder() optR.fit(oof_train, X_train['AdoptionSpeed'].values) coefficients = optR.coefficients() pred_test_y_k = optR.predict(oof_train, coefficients) print(" Valid Counts = ", Counter(X_train['AdoptionSpeed'].values)) print("Predicted Counts = ", Counter(pred_test_y_k)) print("Coefficients = ", coef...
train['Age'] = train['Age'].fillna(np.mean(train['Age']))
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coefficients_ = coefficients.copy() coefficients_[0] = 1.645 coefficients_[1] = 2.115 coefficients_[3] = 2.84 train_predictions = optR.predict(oof_train, coefficients_ ).astype(int) print('train pred distribution: {}'.format(Counter(train_predictions))) test_predictions = optR.predict(oof_test.mean(axis=1), coefficie...
print('age and fare filling with mean') test.isna().sum()
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print("True Distribution:") print(pd.value_counts(X_train['AdoptionSpeed'], normalize=True ).sort_index()) print(" Train Predicted Distribution:") print(pd.value_counts(train_predictions, normalize=True ).sort_index()) print(" Test Predicted Distribution:") print(pd.value_counts(test_predictions, normalize=True )....
test['Age'] = test['Age'].fillna(np.mean(test['Age'])) test['Fare'] = test['Fare'].fillna(np.mean(test['Fare']))
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submission = pd.DataFrame({'PetID': test['PetID'].values, 'AdoptionSpeed': test_predictions.astype(np.int32)}) submission.head() submission.to_csv('submission.csv', index=False )<set_options>
selected_features = ['Pclass', 'Sex', 'Age', 'SibSp', 'Parch', 'Fare']
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%matplotlib inline plt.rc('figure', figsize=(20.0, 10.0))<load_from_csv>
X_train = train[selected_features] X_test = test[selected_features] X_train = pd.get_dummies(X_train) X_test = pd.get_dummies(X_test) y_train = train['Survived']
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train_df = pd.read_csv(os.path.join(INPUT_DIR, 'train', 'train.csv')) X_test = pd.read_csv(os.path.join(INPUT_DIR, 'test', 'test.csv'))<categorify>
model = svm.LinearSVC() model.fit(X_train, y_train )
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class DataFrameColumnMapper(BaseEstimator, TransformerMixin): def __init__(self, column_name, mapping_func, new_column_name=None, drop_original=True): self.column_name = column_name self.mapping_func = mapping_func self.new_column_name = new_column_name if new_column_name is not None else self.column_name self.drop...
model = svm.SVC() model.fit(X_train, y_train )
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class CategoricalToOneHotEncoder(BaseEstimator, TransformerMixin): def __init__(self, columns=None): self.columns = columns self.mappings_ = None def fit(self, X, y=None): if self.columns is None: self.columns = X.select_dtypes(exclude='number') mappings = {} for col in self.columns: labels, uniques = X.loc[:, col]....
model = svm.NuSVC() model.fit(X_train, y_train )
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class CategoricalTruncator(BaseEstimator, TransformerMixin): def __init__(self, column_name, n_values_to_keep=5): self.column_name = column_name self.n_values_to_keep = n_values_to_keep self.values_ = None def fit(self, X, y=None): self.values_ = list(X[self.column_name].value_counts() [:self.n_values_to_keep].keys()...
model = neighbors.KNeighborsClassifier() model.fit(X_train, y_train )
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class DataFrameColumnDropper(BaseEstimator, TransformerMixin): def __init__(self, column_names): self.column_names = column_names def fit(self, X, y=None): return self def transform(self, X): return X.copy().drop(self.column_names, axis=1 )<train_model>
model = GradientBoostingClassifier(n_estimators=130, learning_rate=0.05) model.fit(X_train, y_train )
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class ColumnByFeatureImportancePicker(BaseEstimator, TransformerMixin): def __init__(self, n_features: int = 20, classifier=RandomForestClassifier(n_estimators=100, random_state=42)) : self.n_features = n_features self.classifier = classifier self.attributes_ = None def fit_and_compute_importances(self, X_df, y): X...
predictions = model.predict(X_test )
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<split><EOS>
output = pd.DataFrame({'PassengerId': test.PassengerId, 'Survived': predictions}) output.to_csv('my_submission.csv', index=False) print("Your submission was successfully saved!") output
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<categorify>
%matplotlib inline warnings.filterwarnings('ignore' )
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def has_field_transformer(column_name, new_column_name=None, is_missing_func=pd.notna)-> TransformerMixin: return DataFrameColumnMapper(column_name=column_name, mapping_func=lambda name: np.int(is_missing_func(name)) , drop_original=True, new_column_name=new_column_name if new_column_name is not None else column_name) ...
train = pd.read_csv(".. /input/titanic/train.csv") test = pd.read_csv(".. /input/titanic/test.csv") train.describe(include="all" )
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print("Number of features:", len(list(X_train_preprocessed))) print("") print("Numerical columns:", list(X_train_preprocessed.select_dtypes(include="number"))) print("") print("Non-numerical columns:", list(X_train_preprocessed.select_dtypes(exclude="number")) )<categorify>
ids = test['PassengerId']
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def build_preparation_pipeline() : return Pipeline([ ('to_numpy', DataFrameToValuesTransformer()), ('scaler', StandardScaler()) ]) def build_full_pipeline(classifier=None): preprocessing_pipeline = build_preprocessing_pipeline() preparation_pipeline = build_preparation_pipeline() return Pipeline([ ('preprocessing'...
print(pd.isnull(train ).sum() )
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rf_classifier = RandomForestClassifier(n_estimators=100) rf_pipeline = build_full_pipeline(classifier=rf_classifier) cross_val_score(rf_pipeline, X_train, y_train, cv=5, scoring=make_scorer(cohen_kappa_score))<train_on_grid>
all_data['Embarked'].fillna(all_data['Embarked'].mode() [0], inplace = True) all_data['Fare'].fillna(all_data['Fare'].median() , inplace = True)
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def build_search(pipeline, param_distributions, n_iter=10): return RandomizedSearchCV(pipeline, param_distributions=param_distributions, cv=5, return_train_score=True, refit='cohen_kappa', n_iter=n_iter, scoring={ 'accuracy': make_scorer(accuracy_score), 'cohen_kappa': make_scorer(cohen_kappa_score) }, verbose=1, rand...
all_data['Title'] = all_data.Name.str.extract('([A-Za-z]+)\.', expand=False) all_data['Title'].value_counts()
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None, 50], 'classifier': [RandomForestClassifier(n_estimators=250, random_state=42, max_depth=10)], 'classifier__max_depth': [10, None] } rf_feature_search = build_search(build_full_pipeline() , param_distributions=param_distributions, n_...
frequent_titles = all_data['Title'].value_counts() [:5].index.tolist() frequent_titles
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None], 'classifier': [RandomForestClassifier(n_estimators=500, random_state=42)], 'classifier__n_estimators': [500], 'classifier__max_features': ['auto', 'log2'], 'classifier__max_depth': [None, 10], 'classifier__bootstrap': [False, True]...
all_data['Title'] = all_data['Title'].apply(lambda x: x if x in frequent_titles else 'Other')
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None], 'classifier': [ExtraTreesClassifier(n_estimators=500, random_state=42)], 'classifier__n_estimators': [500], 'classifier__max_features': ['auto', 'log2'], 'classifier__max_depth': [None], 'classifier__min_samples_split': [2, 5, 10],...
median_ages = {} for title in frequent_titles: median_ages[title] = all_data.loc[all_data['Title'] == title]['Age'].median() median_ages['Other'] = all_data['Age'].median() all_data.loc[all_data['Age'].isnull() , 'Age'] = all_data[all_data['Age'].isnull() ]['Title'].map(median_ages )
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None, 50], 'classifier': [LogisticRegression(solver='lbfgs', random_state=42)], 'classifier__multi_class': ['ovr', 'multinomial'], 'classifier__C': np.logspace(-3, 0, 4), } logistic_search = build_search(build_full_pipeline() , param_dist...
Cat_Features = ['Sex', 'Embarked', 'Title'] for feature in Cat_Features: label = LabelEncoder() all_data[feature] = label.fit_transform(all_data[feature] )
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None, 50], 'preparation__scaler': [MinMaxScaler() ], 'classifier': [MLPClassifier(hidden_layer_sizes=(100,), random_state=42)], 'classifier__hidden_layer_sizes': [[10], [10, 10,], [10, 10, 10]], 'classifier__alpha': np.logspace(-4, -2, 3)...
Cont_Features = ['Age', 'Fare'] num_bins = 5 for feature in Cont_Features: bin_feature = feature + 'Bin' all_data[bin_feature] = pd.qcut(all_data[feature], num_bins) label = LabelEncoder() all_data[bin_feature] = label.fit_transform(all_data[bin_feature] )
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<define_search_space>
all_data['Surname'] = all_data.Name.str.extract(r'([A-Za-z]+),', expand=False) all_data['TicketPrefix'] = all_data.Ticket.str.extract(r' (.*\d)', expand=False) all_data['Surname_Ticket'] = all_data['Surname'] + all_data['TicketPrefix'] all_data['IsFamily'] = all_data.Surname_Ticket.duplicated(keep=False ).astype(int ...
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None], 'classifier': [ GradientBoostingClassifier(random_state=42)], 'classifier__loss': ['deviance'], 'classifier__n_estimators': [100, 300], 'classifier__max_features': ['log2', None], 'classifier__max_depth': [5, 10], 'classifier__min_...
all_data['Child'] = all_data.Age.map(lambda x: 1 if x <=16 else 0) FamilyWithChild = all_data[(all_data.IsFamily==1)&(all_data.Child==1)]['Surname_Ticket'].unique() len(FamilyWithChild )
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param_distributions = { 'preprocessing__pick_columns_by_importance__n_features': [None], 'classifier': [ lgb.sklearn.LGBMClassifier(random_state=42, objective='multiclass')], 'classifier__boosting_type': ['gbdt', 'dart'], 'classifier__num_leaves': [20, 31, 50], 'classifier__max_depth': [-1], 'classifier__learning_rate'...
all_data['FamilyId'] = 0 for ind, identifier in enumerate(FamilyWithChild): all_data.loc[all_data.Surname_Ticket==identifier, ['FamilyId']] = ind + 1
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def cross_val_predictions(classifiers, X, y): return np.hstack([cross_val_predict(classifier, X, y, cv=5, method='predict_proba')for classifier in classifiers]) def first_level_predictions(classifiers, X): return np.hstack([classifier.predict_proba(X)for classifier in classifiers]) best_estimators = [ rf_search.b...
X_train = train[['Pclass', 'Sex', 'Parch', 'Embarked', 'CabinBool', 'Title', 'AgeBin', 'FareBin', 'FamilySurvival']] y_train = train['Survived']
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for estimator in best_estimators: estimator.fit(X_train, y_train) X_val_second_level = first_level_predictions(best_estimators, X_val) y_val_pred = stacking_classifier.predict(X_val_second_level) print("Performance of stacking classifier on the hold-out set:", cohen_kappa_score(y_val, y_val_pred))<find_best_model_cl...
model = CatBoostClassifier(verbose=False )
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X_train_val_second_level = cross_val_predictions(best_estimators, X=X_train_val, y=y_train_val) stacking_classifier.fit(X_train_val_second_level, y_train_val) for estimator in best_estimators: estimator.fit(X_train_val, y_train_val) X_test_second_level = first_level_predictions(best_estimators, X=X_test )<predict_on...
main_features = ['Sex', 'FamilySurvival', 'FareBin', 'Pclass', 'Title'] X_test = test[main_features] X_train = train[main_features]
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def get_predictions(estimator, X): predictions = estimator.predict(X) indices = X_test.loc[:, 'PetID'] as_dict = [{'PetID': index, 'AdoptionSpeed': prediction} for index, prediction in zip(indices, predictions)] df = pd.DataFrame.from_dict(as_dict) df = df.reindex(['PetID', 'AdoptionSpeed'], axis=1) return df predic...
cross_val_score(estimator=model, X=X_train, y=y_train, cv=5 ).mean()
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def write_submission(predictions): submission_folder = '.' dest_file = os.path.join(submission_folder, 'submission.csv') predictions.to_csv(dest_file, index=False) print("Wrote to {}".format(dest_file)) write_submission(predictions )<set_options>
ensemble = [CatBoostClassifier(verbose=False), RandomForestClassifier() , svm.NuSVC(probability=True), neighbors.KNeighborsClassifier() ] classifiers_with_names = [] _ = [classifiers_with_names.append(( clf.__class__.__name__, clf)) for clf in ensemble] voting = VotingClassifier(classifiers_with_names, voting='hard') ...
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<install_modules><EOS>
output = pd.DataFrame({'PassengerId': test.PassengerId, 'Survived': predictions.astype(int)}) output.to_csv('submission_new_session.csv', index=False )
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<set_options>
warnings.filterwarnings("ignore") %matplotlib inline
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shap.initjs()<load_from_csv>
train = pd.read_csv(".. /input/titanic/train.csv") test = pd.read_csv(".. /input/titanic/test.csv") submission = pd.read_csv(".. /input/titanic/gender_submission.csv" )
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train = pd.read_csv('.. /input/tabular-playground-series-jan-2021/train.csv') test = pd.read_csv('.. /input/tabular-playground-series-jan-2021/test.csv') sub = pd.read_csv('.. /input/tabular-playground-series-jan-2021/sample_submission.csv' )<define_variables>
train.isnull().sum()
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train_oof = np.zeros(( 300000,)) test_preds = 0 train_oof.shape<init_hyperparams>
train.isnull().sum()
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Best_trial= {'lambda': 0.0030282073258141168, 'alpha': 0.01563845128469084, 'colsample_bytree': 0.55, 'subsample': 0.7, 'learning_rate': 0.01, 'max_depth': 15, 'random_state': 2020, 'min_child_weight': 257, 'tree_method':'gpu_hist', 'predictor': 'gpu_predictor'}<prepare_x_and_y>
train.groupby('Pclass' ).Survived.value_counts()
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test = xgb.DMatrix(test[columns] )<train_model>
train['Name'] = train.Name.str.extract('([A-Za-z]+)\.',expand = False )
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NUM_FOLDS = 8 kf = KFold(n_splits=NUM_FOLDS, shuffle=True, random_state=0) for f,(train_ind, val_ind)in tqdm(enumerate(kf.split(train, target))): train_df, val_df = train.iloc[train_ind][columns], train.iloc[val_ind][columns] train_target, val_target = target[train_ind], target[val_ind] train_df = xgb.DMatrix(train_df...
top6 = train['Name'].value_counts() [:6].index.to_list() top6
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mean_squared_error(train_oof, target, squared=False) <save_model>
train['Name'] = train['Name'].apply(lambda x: x if x in top6 else 'Other' )
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np.save('train_oof', train_oof) np.save('test_preds', test_preds )<predict_on_test>
train.groupby('Name' ).Survived.value_counts()
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%%time shap_preds = model.predict(test, pred_contribs=True )<load_from_csv>
train['family'] = train['SibSp'] + train['Parch'] + 1
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test = pd.read_csv('.. /input/tabular-playground-series-jan-2021/test.csv') <prepare_x_and_y>
train.groupby('family' ).Survived.value_counts()
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test = xgb.DMatrix(test[columns] )<predict_on_test>
for i in range(len(train)) : if(train['family'][i] > 1): train['family'][i] = 1 else: train['family'][i] = 0
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%%time shap_interactions = model.predict(test, pred_interactions=True )<set_options>
train.groupby('Cabin' ).Survived.value_counts()
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del shap_interactions, shap_preds gc.collect() gc.collect()<load_from_csv>
train['Cabin'].fillna('S',inplace=True )
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train = pd.read_csv('.. /input/tabular-playground-series-jan-2021/train.csv') test = pd.read_csv('.. /input/tabular-playground-series-jan-2021/test.csv') sub = pd.read_csv('.. /input/tabular-playground-series-jan-2021/sample_submission.csv' )<feature_engineering>
for i in range(len(train)) : train['Cabin'][i] = train['Cabin'][i][0]
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train['cont13_cont4'] = train['cont13']*train['cont4'] train['cont13_cont11'] = train['cont13']*train['cont11'] train['cont13_cont7'] = train['cont13']*train['cont7'] train['cont13_cont2'] = train['cont13']*train['cont2'] train['cont13_cont10'] = train['cont13']*train['cont10'] test['cont13_cont4'] = test['cont13']*tes...
train.groupby('Cabin' ).Survived.value_counts()
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test = xgb.DMatrix(test[columns] )<init_hyperparams>
train['fare_val'] = 0 for i in range(len(train)) : if(train['Fare'][i] > 32.0): train['fare_val'][i] = 1
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Best_trial= {'lambda': 0.0030282073258141168, 'alpha': 0.01563845128469084, 'colsample_bytree': 0.55, 'subsample': 0.7, 'learning_rate': 0.01, 'max_depth': 15, 'random_state': 2020, 'min_child_weight': 257, 'tree_method':'gpu_hist', 'predictor': 'gpu_predictor'}<train_model>
train.groupby('fare_val' ).Survived.value_counts()
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kf = KFold(n_splits=NUM_FOLDS, shuffle=True, random_state=0) for f,(train_ind, val_ind)in tqdm(enumerate(kf.split(train, target))): train_df, val_df = train.iloc[train_ind][columns], train.iloc[val_ind][columns] train_target, val_target = target[train_ind], target[val_ind] train_df = xgb.DMatrix(train_df, label=train_...
test['family'] = test['SibSp'] + test['Parch'] + 1 for i in range(len(test)) : if(test['family'][i] > 1): test['family'][i] = 1 else: test['family'][i] = 0 test['Name'] = test['Name'].apply(lambda x: x if x in top6 else 'Other') test['Cabin'].fillna('S',inplace=True) for i in range(len(test)) : test['Cabin'][i] = tes...
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mean_squared_error(train_oof_2, target, squared=False) <compute_test_metric>
features = [ 'Pclass', 'Sex', 'Age', 'family', 'fare_val', 'Embarked' ] target = 'Survived'
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mean_squared_error(0.6*train_oof+0.4*train_oof_2, target, squared=False) <save_model>
train[features].isnull().sum()
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np.save('train_oof_2', train_oof_2) np.save('test_preds_2', test_preds_2 )<save_to_csv>
test[features].isnull().sum()
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sub['target'] = test_preds sub.to_csv('submission.csv', index=False )<save_to_csv>
;
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sub['target'] = test_preds_2 sub.to_csv('submission_2.csv', index=False )<save_to_csv>
Age_std = train['Age'].std() train['Age'] = train['Age'].fillna(value = Age_std) Age_std_t = test['Age'].std() test['Age'] = test['Age'].fillna(value = Age_std_t) f"'train',{Age_std}, 'test',{Age_std_t}"
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sub['target'] = 0.6*test_preds+0.4*test_preds_2 sub.to_csv('submission_average.csv', index=False )<set_options>
lbl = LabelEncoder() train['Sex'] = lbl.fit_transform(train[['Sex']].values.ravel()) test['Sex'] = lbl.fit_transform(test[['Sex']].values.ravel() )
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warnings.filterwarnings('ignore') pd.set_option('display.max_rows', 50) pd.set_option('display.max_columns', 50) <load_from_csv>
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df_train = pd.read_csv('.. /input/tabular-playground-series-jan-2021/train.csv') df_test = pd.read_csv('.. /input/tabular-playground-series-jan-2021/test.csv') continuous_features = [feature for feature in df_train.columns if feature.startswith('cont')] target = 'target' print(f'Training Set Shape = {df_train.shape}'...
train['Embarked'] = train['Embarked'].fillna(value=train['Embarked'].mode() [0]) test['Embarked'] = test['Embarked'].fillna(value=test['Embarked'].mode() [0])
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class Preprocessor: def __init__(self, train, test, n_splits, shuffle, random_state, scaler, discretize_features, create_features): self.train = train.copy(deep=True) self.test = test.copy(deep=True) self.n_splits = n_splits self.shuffle = shuffle self.random_state = random_state self.scaler = scaler() if scaler else...
train_ds = train[features] test_ds = test[features]
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cross_validation_seed = 0 preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_processed, df_test_processed = preprocessor.transform() print(f' Preprocessed Training Set Shape = {d...
train_ds = pd.get_dummies(columns = ['Embarked','Pclass'],data=train_ds,drop_first = True) test_ds = pd.get_dummies(columns = ['Embarked','Pclass'],data=test_ds,drop_first = True )
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class TreeModels: def __init__(self, predictors, target, model, model_parameters, boosting_rounds, early_stopping_rounds, seeds): self.predictors = predictors self.target = target self.model = model self.model_parameters = model_parameters self.boosting_rounds = boosting_rounds self.early_stopping_rounds = early_stoppi...
y_train = train[target]
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TRAIN_LGB = False if TRAIN_LGB: model = 'LGB' lgb_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_lgb, df_test_lgb = lgb_preprocessor.transform() print(f' {model} Training Set...
X_train, X_valid, y_train, y_valid = train_test_split(train_ds, y_train, test_size=0.30 )
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TRAIN_CB = False if TRAIN_CB: model = 'CB' cb_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_cb, df_test_cb = cb_preprocessor.transform() print(f' {model} Training Set Shape ...
from sklearn.model_selection import train_test_split,cross_val_score,RandomizedSearchCV,GridSearchCV from sklearn.metrics import confusion_matrix, accuracy_score, classification_report from sklearn.metrics import roc_auc_score, roc_curve from sklearn.ensemble import RandomForestClassifier from xgboost import XGBClassif...
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TRAIN_XGB = False if TRAIN_XGB: model = 'XGB' xgb_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_xgb, df_test_xgb = xgb_preprocessor.transform() print(f' {model} Training Set...
;
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TRAIN_RF = False if TRAIN_RF: model = 'RF' rf_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_rf, df_test_rf = rf_preprocessor.transform() print(f' {model} Training Set Shape ...
rfc = XGBClassifier() params = {'n_estimators': [200,500,800,1000,1200], 'max_depth': [3,5,7], 'objective' : ['binary:logistic'], 'min_samples_leaf' : [1, 2, 3, 4, 5], 'max_leaf_nodes':[2,3,5,7], 'min_child_weight': [1, 5, 10], 'gamma': [0.5, 1, 1.5, 2, 5], } rfc_cv = RandomizedSearchCV(rfc, params, cv = 10, n_jobs=-1,...
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class LinearModels: def __init__(self, predictors, target, model, model_parameters): self.predictors = predictors self.target = target self.model = model self.model_parameters = model_parameters def _train_and_predict_ridge_regression(self, X_train, y_train, X_test): X = pd.concat([X_train[continuous_features], X_test[...
rfc_cv.best_params_ best_model = rfc_cv.best_estimator_ print(best_model) print(rfc_cv.best_score_ )
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FIT_RR = False if FIT_RR: model = 'Ridge' ridge_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=None, create_features=False, discretize_features=False) df_train_ridge, df_test_ridge = ridge_preprocessor.transform() print(f' {model} Training...
rfc_pred = best_model.predict(X_valid) print("Accuracy: ", accuracy_score(y_valid, rfc_pred)) print(" Confusion Matrix ") print(confusion_matrix(y_valid, rfc_pred))
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FIT_SVM = False if FIT_SVM: model = 'SVM' svm_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=StandardScaler, create_features=False, discretize_features=True) df_train_svm, df_test_svm = svm_preprocessor.transform() print(f' {model} Trainin...
filename = 'Titanic_model.sav' pickle.dump(best_model, open(filename, 'wb'))
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class NeuralNetworks: def __init__(self, predictors, target, model, model_parameters, seeds): self.predictors = predictors self.target = target self.model = model self.model_parameters = model_parameters self.seeds = seeds def _set_seed(self, seed): random.seed(seed) np.random.seed(seed) tf.random.set_seed(seed) os....
loaded_model = pickle.load(open(filename, 'rb')) result = loaded_model.score(X_valid, y_valid) print(result )
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TRAIN_TMLP = False if TRAIN_TMLP: model = 'TMLP' tmlp_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=StandardScaler, create_features=False, discretize_features=True) df_train_tmlp, df_test_tmlp = tmlp_preprocessor.transform() print(f' {mod...
passId = test[['PassengerId']].values
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TRAIN_RMLP = False if TRAIN_RMLP: model = 'RMLP' rmlp_preprocessor = Preprocessor(train=df_train, test=df_test, n_splits=5, shuffle=True, random_state=cross_validation_seed, scaler=StandardScaler, create_features=False, discretize_features=False) df_train_rmlp, df_test_rmlp = rmlp_preprocessor.transform() for feature ...
final_pred = best_model.predict(test_ds )
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class SubmissionPipeline: def __init__(self, train, test, blend, prediction_columns, add_public_best): self.train = train self.test = test self.blend = blend self.prediction_columns = prediction_columns self.add_public_best = add_public_best def weighted_average(self): self.train['FinalPredictions'] =(0.77 * self.train...
sub = {'PassengerId':passId.ravel() , 'Survived':final_pred}
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df_test_processed['target'] = df_test_submission['FinalPredictions'] df_test_processed[['id', 'target']].to_csv('submission.csv', index=False) df_test_processed[['id', 'target']].describe()<set_options>
submission_csv = pd.DataFrame(sub )
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plt.style.use('fivethirtyeight') y_ = Fore.YELLOW r_ = Fore.RED g_ = Fore.GREEN b_ = Fore.BLUE m_ = Fore.MAGENTA c_ = Fore.CYAN sr_ = Style.RESET_ALL warnings.filterwarnings('ignore') <load_from_csv>
submission_csv.to_csv('final_sub_titanic_xgb_cv_10.csv',index = False )
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path = '.. /input/tabular-playground-series-jan-2021/' train_data = pd.read_csv(path + 'train.csv') test_data = pd.read_csv(path + 'test.csv') sample = pd.read_csv(path + 'sample_submission.csv' )<feature_engineering>
x = pd.read_csv("./final_sub_titanic_xgb_cv_10.csv" )
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