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train_data['cont13_cont4_mul'] = train_data['cont13']*train_data['cont4'] train_data['cont13_cont11_mul'] = train_data['cont13']*train_data['cont11'] train_data['cont13_cont7_mul'] = train_data['cont13']*train_data['cont7'] train_data['cont13_cont2_mul'] = train_data['cont13']*train_data['cont2'] train_data['cont13_con...
df_train = pd.read_csv('/kaggle/input/titanic/train.csv') df_train.head()
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num_bins = int(1 + np.log2(len(train_data))) train_data.loc[:,'bins'] = pd.cut(train_data['target'].to_numpy() ,bins=num_bins,labels=False) features = [f'cont{x}' for x in range(1,15)] features += [ 'cont13_cont4_mul', 'cont13_cont11_mul', 'cont13_cont7_mul', 'cont13_cont2_mul', 'cont13_cont10_mul', ] target_feature ...
df_train.isnull().sum()
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def rmse_score(y_true, y_pred): return np.sqrt(mean_squared_error(y_true, y_pred))<init_hyperparams>
df_train['Survived'].value_counts()
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nfolds = 5 seed = 42 lgb_params={'objective':'regression', 'metrics':'rmse', 'boosting':'gbdt', 'min_data_per_group': 5, 'num_leaves': 256, 'max_depth': -1, 'learning_rate': 0.005, 'subsample_for_bin': 200000, 'lambda_l1': 1.074622455507616e-05, 'lambda_l2': 2.0521330798729704e-06, 'n_jobs': -1, 'cat_smooth': 1.0, 'ver...
df_train['Survived'].value_counts() /len(df_train)*100
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final_preds = np.zeros(test_data.shape[0]) kfold = StratifiedKFold(n_splits=nfolds,random_state=seed) for f,(train_idx, valid_idx)in enumerate(kfold.split(X=train_data,y=bins)) : print(f"Fold: {f}") X_train, X_valid, y_train, y_valid = train_data[train_idx],train_data[valid_idx],target[train_idx],target[valid_idx] p...
df_train = df_train.drop(['PassengerId','Ticket','Name','Cabin'],axis=1 )
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sample.target = final_preds.ravel() sample.to_csv("submission.csv",index=False) sample.head()<install_modules>
df_train['Sex'].value_counts() /len(df_train)*100
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!pip install --upgrade xgboost xgb.__version__<load_from_csv>
df_train[df_train['Survived']==0]['Sex'].value_counts() /len(df_train[df_train['Survived']==0])*100
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sub = pd.read_csv("/kaggle/input/tabular-playground-series-jan-2021/sample_submission.csv") data = pd.read_csv("/kaggle/input/tabular-playground-series-jan-2021/train.csv") final_test = pd.read_csv("/kaggle/input/tabular-playground-series-jan-2021/test.csv" )<train_model>
df_train[df_train['Survived']==1]['Sex'].value_counts() /len(df_train[df_train['Survived']==1])*100
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print('Training Data') print(data.isnull().sum()) print() print() print('Testing Data') print(final_test.isnull().sum() )<prepare_x_and_y>
df_train[df_train['Survived']==1]['Pclass'].value_counts() /len(df_train[df_train['Survived']==1])*100
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columns = final_test.columns[1:] train = data[columns] target = data['target']<split>
df_train[df_train['Survived']==0]['Pclass'].value_counts() /len(df_train[df_train['Survived']==0])*100
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x_train, x_test, y_train, y_test =train_test_split( train, target, random_state= 2021, test_size = 0.20) xgb_initial = xgb.XGBRegressor() xgb_initial.fit(x_train, y_train) initial_preds = xgb_initial.predict(x_test )<compute_test_metric>
df_train['Family']=df_train['SibSp']+df_train['Parch']
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mean_squared_error(y_test, initial_preds, squared=False) <split>
df_train['Embarked'].value_counts() /len(df_train )
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def objective(trial, X_data = train, Y_data = target): x_train, x_test, y_train, y_test = train_test_split( X_data, Y_data, random_state= 2021, test_size = 0.20) param = { 'tree_method':'gpu_hist', 'predictor': 'gpu_predictor', 'learning_rate': trial.suggest_discrete_uniform('learning_rate',0.01,0.50,0.05), 'colsampl...
df_train[df_train['Survived']==1]['Embarked'].value_counts() /len(df_train[df_train['Survived']==1])*100
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study = optuna.create_study(direction='minimize') study.optimize(objective, n_trials= 100 )<train_model>
df_train[df_train['Survived']==0]['Embarked'].value_counts() /len(df_train[df_train['Survived']==0])*100
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print('Number of finished trials:', len(study.trials)) print('Best trial:', study.best_trial.params) print('Best objective value:', study.best_value) <find_best_params>
df_train['Sex'] = pd.get_dummies(df_train['Sex']) df_train['Age'] = df_train['Age'].fillna(df_train['Age'].median()) df_train['Embarked'] = df_train['Embarked'].map({'C':0,'Q':1,'S':2} )
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best_trial = study.best_trial.params best_trial['tree_method'] = 'gpu_hist' best_trial['predictor'] = 'gpu_predictor'<init_hyperparams>
df_train.isnull().sum()
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best_trial= {'learning_rate': 0.01, 'colsample_bylevel': 0.6100000000000001, 'colsample_bytree': 0.91, 'max_depth': 10, 'subsample': 0.8, 'min_child_weight': 67, 'lambda': 0.012157425362490908, 'alpha': 7.278941365308569e-08, 'random_state': 3000, 'gamma': 1, 'tree_method': 'gpu_hist', 'predictor': 'gpu_predictor'} <p...
df_train = df_train.dropna()
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final_test = xgb.DMatrix(final_test[columns] )<define_variables>
from sklearn.preprocessing import StandardScaler from sklearn.pipeline import make_pipeline from sklearn.impute import SimpleImputer from sklearn.model_selection import train_test_split, cross_validate, GridSearchCV from sklearn.dummy import DummyClassifier from sklearn.naive_bayes import GaussianNB from sklearn.linear...
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train_oof = np.zeros(( 300000,)) test_preds = 0 train_oof.shape<train_model>
X = df_train.drop(['Survived'],axis=1) y = df_train['Survived'] X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=.2,stratify=y, random_state=42 )
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NUM_FOLDS=10 kf = KFold(n_splits=NUM_FOLDS, shuffle=True, random_state=0) fold_rmse =[] for f,(train_ind, val_ind)in tqdm(enumerate(kf.split(train, target))): train_df, val_df = train.iloc[train_ind][columns], train.iloc[val_ind][columns] train_target, val_target = target[train_ind], target[val_ind] train_df = xgb.DMa...
columns = ['Model Name', 'accuracy','precision','recall','ROC AUC score','run time'] results = pd.DataFrame(columns=columns )
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sub['target'] = test_preds sub.to_csv('submission2_post_competition.csv', index=False )<split>
def metrics(model_name,y_test,y_pred): accuracy = accuracy_score(y_test,y_pred) roc_auc =roc_auc_score(y_test, y_pred) precision = precision_score(y_pred=y_pred, y_true=y_test,zero_division=1) recall = recall_score(y_pred=y_pred, y_true=y_test,zero_division=1) print(classification_report(y_test, y_pred,zero_divisio...
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def objective_2(trial, X_data = train, Y_data = target): x_train, x_test, y_train, y_test = train_test_split( X_data, Y_data, random_state= 2021, test_size = 0.20) param = { 'tree_method':'gpu_hist', 'predictor': 'gpu_predictor', 'learning_rate': 0.01, 'colsample_bylevel': trial.suggest_discrete_uniform('colsample_by...
model_name = 'Dummy' model = DummyClassifier(strategy='most_frequent') pipe_dummy = make_pipeline( SimpleImputer(strategy='median'), StandardScaler() , model) t0 = time.time() pipe_dummy.fit(X_train,y_train) t1 = time.time() - t0 y_pred = pipe_dummy.predict(X_test) print('time to run in seconds: ',format(t1)) resu...
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study_2 = optuna.create_study(direction='minimize') study_2.optimize(objective_2, n_trials= 100 )<train_model>
model_name = 'Naive Bayes' NB = GaussianNB() params_NB = {'var_smoothing': np.logspace(0,-9, num=100)} grid = GridSearchCV(estimator=NB, param_grid=params_NB, cv=5) grid = grid.fit(X_train,y_train) model = grid.best_estimator_ pipe_NB = make_pipeline( SimpleImputer(strategy='median'), StandardScaler() , model) t0 =...
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print('Number of finished trials:', len(study_2.trials)) print('Best trial:', study_2.best_trial.params) print('Best objective value:', study_2.best_value) <find_best_params>
model_name = 'Logistic Regression' param_grid = [{'penalty' : ['l1', 'l2'], 'C' : np.logspace(0, 4, 10), 'solver' : ['liblinear']}] LR = LogisticRegression() grid = GridSearchCV(estimator=LR, param_grid=param_grid, cv=5) grid = grid.fit(X_train,y_train) model = grid.best_estimator_ pipe_LR = make_pipeline( SimpleImp...
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best_trial_2 = study_2.best_trial.params best_trial_2['tree_method'] = 'gpu_hist' best_trial_2['predictor'] = 'gpu_predictor' best_trial_2['learning_rate'] = 0.01<define_variables>
model_name = 'kNN' knn = KNeighborsClassifier() param_grid = {'n_neighbors': [3, 5, 7, 9, 11], 'weights': ['uniform', 'distance'] } grid = GridSearchCV(estimator=knn, param_grid=param_grid, cv=5) grid = grid.fit(X_train,y_train) model = grid.best_estimator_ pipe_kNN = make_pipeline( SimpleImputer(strategy='median'),...
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train_oof = np.zeros(( 300000,)) test_preds_2 = 0 train_oof.shape<init_hyperparams>
model_name = 'Random Forest' rfc=RandomForestClassifier(random_state=1234) param_grid = {'n_estimators': [100,200], 'max_features': ['auto', 'sqrt', 'log2'], 'max_depth' : [5,10,15,20,25,50], 'criterion' :['gini', 'entropy']} grid = GridSearchCV(estimator=rfc, param_grid=param_grid, cv= 5) grid = grid.fit(X_train,y_t...
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best_trial_2 = {'colsample_bylevel': 0.91, 'colsample_bytree': 0.6100000000000001, 'max_depth': 10, 'subsample': 0.5, 'min_child_weight': 21, 'lambda': 2.4118345076896113e-05, 'alpha': 3.234942680594196e-08, 'random_state': 3000, 'gamma': 1.51, 'tree_method': 'gpu_hist', 'predictor': 'gpu_predictor', 'learning_rate': 0...
df_test = pd.read_csv('/kaggle/input/titanic/test.csv') df_test.head()
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NUM_FOLDS=10 kf = KFold(n_splits=NUM_FOLDS, shuffle=True, random_state=0) fold_rmse_2 =[] for f,(train_ind, val_ind)in tqdm(enumerate(kf.split(train, target))): train_df, val_df = train.iloc[train_ind][columns], train.iloc[val_ind][columns] train_target, val_target = target[train_ind], target[val_ind] train_df = xgb.D...
df_test.isnull().sum()
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sub['target'] = test_preds_2 sub.to_csv('submission3_post_competition.csv', index=False )<install_modules>
passengerId = df_test['PassengerId'] df_test['Family'] = df_test['SibSp'] + df_test['Parch'] df_test = df_test.drop(['Cabin','Name','Ticket','PassengerId'],axis=1 )
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!pip install tensorflow_addons==0.9.1<set_options>
df_test['Age'] = df_test['Age'].fillna(df_test['Age'].median()) df_test['Fare'] = df_test['Fare'].fillna(df_test['Fare'].median() )
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warnings.simplefilter('ignore') warnings.filterwarnings('ignore') pd.set_option('display.max_columns', 1000) pd.set_option('display.max_rows', 500 )<define_variables>
df_test['Embarked'] = df_test['Embarked'].map({'C':0,'Q':1,'S':2}) df_test['Sex'] = pd.get_dummies(df_test['Sex'] )
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EPOCHS = 180 NNBATCHSIZE = 16 GROUP_BATCH_SIZE = 4000 SEED = 321 LR = 0.001 SPLITS = 5 def seed_everything(seed): random.seed(seed) np.random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) tf.random.set_seed(seed )<load_from_csv>
prediction = [] for i in range(len(df_test)) : test = pipe_rfc.predict([df_test.loc[i]]) prediction.append(test )
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def read_data() : train_data = pd.read_csv('.. /input/data-without-drift/train_clean.csv') clean_train = pd.read_csv('.. /input/liverpool-noiseremoval/clean_train_signal.csv') train_oofs = pd.read_csv('.. /input/liverpool-lgbm-oofs/oofs_train.csv') test_data = pd.read_csv('.. /input/data-without-drift/test_clean.csv...
prediction = pd.DataFrame(prediction, columns = ['Survived'] )
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train_or = pd.read_csv('/kaggle/input/liverpool-ion-switching/train.csv') sub = pd.read_csv('submission_wavenet.csv') sub[700000:800000]['open_channels']=sub[700000:800000]['open_channels'].values + train_or[4000000:4100000]['open_channels'].values sub.to_csv('final_submission_wavenet.csv', index=False, float_format=...
test_data_predictions = pd.concat([passengerId,prediction],axis=1 )
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for dirname, _, filenames in os.walk('/kaggle/input'): for filename in filenames: print(os.path.join(dirname, filename)) <define_search_space>
test_data_predictions.to_csv('Titanic_survivor_prediction.csv',index=False )
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seed = 42 test_size = 0.2 device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu") workspace = "./unet" backbone = [1, 1, 1, 1] encoder_channels = np.array([64, 128, 256, 512, 1024])*2 decoder_channels = np.array([512, 256, 128, 64])*2 fold = 0 time_step = 4000 time_step_test = 10000 stride = 2 batch_si...
pd.read_csv('Titanic_survivor_prediction.csv' )
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train = pd.read_csv('/kaggle/input/liverpool-ion-switching/train.csv') test = pd.read_csv('/kaggle/input/liverpool-ion-switching/test.csv') sample = pd.read_csv('/kaggle/input/liverpool-ion-switching/sample_submission.csv' )<define_variables>
train_data = pd.read_csv('/kaggle/input/titanic/train.csv') train_data.head()
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def make_batch(df, batchsize=500000): batches = df.shape[0] // batchsize df['batch'] = 0 for i in range(batches): idx = np.arange(i*batchsize,(i+1)*batchsize) df.loc[idx, 'batch'] = i + 1 return df<define_variables>
test_data = pd.read_csv("/kaggle/input/titanic/test.csv") test_data.head()
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train = make_batch(train) test = make_batch(test, batchsize=500000) train.groupby('batch')['signal'].describe()<define_variables>
data = [train_data, test_data] for dataset in data: mean = train_data['Age'].mean() dataset['Age'].fillna(mean, inplace = True) dataset["Age"] = dataset["Age"].astype(int)
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<split>
for dataset in data: dataset['relatives'] = dataset['SibSp'] + dataset['Parch'] dataset.loc[dataset['relatives'] > 0, 'relatives'] = 1 dataset.loc[dataset['relatives'] == 0, 'relatives'] = 0
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train_segm_separators = np.concatenate([[0,500000,600000], np.arange(1000000,5000000+1,500000)]) train_segm_signal_groups = [0,0,0,1,2,4,3,1,2,3,4] train_segm_is_shifted = [False, True, False, False, False, False, False, True, True, True, True] train_signal = np.split(train['signal'].values, train_segm_separators[1:-1...
for dataset in data: dataset['Embarked'].fillna("S", inplace = True )
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test_segm_separators = np.concatenate([np.arange(0,1000000+1,100000), [1500000,2000000]]) test_segm_signal_groups = [0,2,3,0,1,4,3,4,0,2,0,0] test_segm_is_shifted = [True, True, False, False, True, False, True, True, True, False, True, False] test_signal = np.split(test['signal'].values, test_segm_separators[1:-1] )<t...
women = train_data.loc[train_data.Sex == 'female']["Survived"] rate_women = sum(women)/len(women) print("女性生还率:", rate_women) men = train_data.loc[train_data.Sex == 'male']["Survived"] rate_men = sum(men)/len(men) print("男性生还率:", rate_men )
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<concatenate><EOS>
y = train_data["Survived"] features = ["Pclass", "Sex", "Age", "Embarked", "relatives"] X = pd.get_dummies(train_data[features]) X_test = pd.get_dummies(test_data[features]) model = RandomForestClassifier(n_estimators=100, max_depth=5, random_state=1) model.fit(X, y) predictions = model.predict(X_test) output = pd...
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<train_model>
pip install -U lightautoml
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test_signal_shift_clean = [] test_signal_detrend = [] test_remove_shift = [True, True, False, False, True, False, True, True, True, False, True, False] for data, use_fit, signal in zip(test_signal_shift, test_segm_is_shifted, test_signal): if use_fit: data_x = np.arange(len(data), dtype=float)* window_size + window_siz...
import os import time import re import numpy as np import pandas as pd from sklearn.metrics import accuracy_score from sklearn.model_selection import train_test_split import torch from lightautoml.automl.presets.tabular_presets import TabularAutoML, TabularUtilizedAutoML from lightautoml.dataset.roles import DatetimeRo...
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test_signal = np.ndarray(0) for arr in test_signal_detrend: test_signal = np.append(test_signal, arr )<split>
N_THREADS = 4 N_FOLDS = 5 RANDOM_STATE = 42 TEST_SIZE = 0.2 TIMEOUT = 600
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train_time = train['time'][:].values test_time = test['time'][:].values<drop_column>
np.random.seed(RANDOM_STATE) torch.set_num_threads(N_THREADS )
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train = train.drop(['signal'], axis=1) test = test.drop(['signal'], axis=1 )<groupby>
%%time train_data = pd.read_csv('.. /input/titanic/train.csv') train_data.head()
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def data_filter(data, time, signal, sigm=6, batchsize=500000): mean_std, cut_off, lower, upper, filtered_signal, filtered_time = [], [], [], [], [], [] for x, y in zip(data.groupby('batch')['signal'].agg('mean'), data.groupby('batch')['signal'].agg('std')) : mean_std.append(( x, y)) for i in range(len(mean_std)) : lowe...
test_data = pd.read_csv('.. /input/titanic/test.csv') test_data.head()
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train['signal'] = train_signal test['signal'] = test_signal<split>
submission = pd.read_csv('.. /input/titanic/gender_submission.csv') submission.head()
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train_time, train_signal = data_filter(train, train_time, train_signal) test_time, test_signal = data_filter(test, test_time, test_signal, sigm=6, batchsize=500000 )<prepare_x_and_y>
def get_title(name): title_search = re.search('([A-Za-z]+)\.', name) if title_search: return title_search.group(1) return "" def create_extra_features(data): data['Ticket_type'] = data['Ticket'].map(lambda x: x[0:3]) data['Name_Words_Count'] = data['Name'].map(lambda x: len(x.split())) data['Has_Cabin'] = data["Cabi...
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def interpol(time, signal): if len(time)> 2000000: LENA =(0.0001, 500.0001, 0.0001) elif(len(time)> 500000)and(len(time)< 2000000): LENA =(500.0001, 700.0001, 0.0001) else: LENA =(350.0001, 400.0001, 0.0001) y = np.array(signal[:]) x = np.array(time[:]) f = interpolate.interp1d(x, y) new_time = np.arange(*LENA) ...
tr_data, te_data = train_test_split(train_data, test_size=TEST_SIZE, stratify=train_data['Survived'], random_state=RANDOM_STATE) print('Data splitted.Parts sizes: tr_data = {}, te_data = {}'.format(tr_data.shape, te_data.shape))
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train = train.drop(['signal', 'time'], axis=1) test = test.drop(['signal', 'time'], axis=1) train['time'], train_signal = interpol(train_time, train_signal) test['time'], test_signal = interpol(test_time, test_signal) train['signal'] = train_signal test['signal'] = test_signal<import_modules>
%%time def acc_score(y_true, y_pred, **kwargs): return accuracy_score(y_true,(y_pred > 0.5 ).astype(int), **kwargs) task = Task('binary', metric = acc_score )
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from scipy.signal import butter,filtfilt<init_hyperparams>
%%time roles = { 'target': 'Survived', 'drop': ['PassengerId', 'Name','Ticket'], }
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T = 5.0 fs = 30.0 cutoff = 2 nyq = 0.5 * fs order = 2 n = int(T * fs )<split>
%%time automl = TabularAutoML(task = task, timeout = TIMEOUT, cpu_limit = N_THREADS, general_params = {'use_algos': [['linear_l2', 'lgb', 'lgb_tuned']]}, reader_params = {'n_jobs': N_THREADS}) oof_pred = automl.fit_predict(tr_data, roles = roles) print('oof_pred: {} Shape = {}'.format(oof_pred[:10], oof_pred.shape))
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def butter_lowpass_filter(data, cutoff, fs, order): normal_cutoff = cutoff / nyq b, a = butter(order, normal_cutoff, btype='low', analog=False) y = filtfilt(b, a, data) return y<define_variables>
%%time test_pred = automl.predict(te_data) print('Prediction for test data: {} Shape = {}'.format(test_pred[:10], test_pred.shape)) print('Check scores...') print('OOF score: {}'.format(acc_score(tr_data['Survived'].values, oof_pred.data[:, 0]))) print('TEST score: {}'.format(acc_score(te_data['Survived'].values, te...
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seventh_batch_time, seventh_batch_signal = [x/10000 for x in range(3500001, 4000001, 1)], list(train_signal[3500000:4000000] )<define_variables>
%%time automl = TabularUtilizedAutoML(task = task, timeout = TIMEOUT, cpu_limit = N_THREADS, general_params = {'use_algos': [['linear_l2', 'lgb', 'lgb_tuned']]}, reader_params = {'n_jobs': N_THREADS}) oof_pred = automl.fit_predict(tr_data, roles = roles) print('oof_pred: {} Shape = {}'.format(oof_pred[:10], oof_pred....
Titanic - Machine Learning from Disaster
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poper = 0 for i in range(1, 499999): if(train_signal[i+3500000] > 2.2)or(train_signal[i+3500000] < -3.8): seventh_batch_time.pop(i-poper) seventh_batch_signal.pop(i-poper) poper += 1<feature_engineering>
%%time test_pred = automl.predict(te_data) print('Prediction for test data: {} Shape = {}'.format(test_pred[:10], test_pred.shape)) print('Check scores...') print('OOF score: {}'.format(acc_score(tr_data['Survived'].values, oof_pred.data[:, 0]))) print('TEST score: {}'.format(acc_score(te_data['Survived'].values, te...
Titanic - Machine Learning from Disaster
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_, seventh_batch_signal = interpol(seventh_batch_time, seventh_batch_signal )<feature_engineering>
%%time automl = TabularUtilizedAutoML(task = task, timeout = TIMEOUT, cpu_limit = N_THREADS, general_params = {'use_algos': [['linear_l2', 'lgb', 'lgb_tuned']]}, reader_params = {'n_jobs': N_THREADS}) oof_pred = automl.fit_predict(train_data, roles = roles) print('oof_pred: {} Shape = {}'.format(oof_pred[:10], oof_pr...
Titanic - Machine Learning from Disaster
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train_signal[3500000:4000000] = seventh_batch_signal[:]<drop_column>
%%time test_pred = automl.predict(test_data) print('Prediction for test data: {} Shape = {}'.format(test_pred[:10], test_pred.shape)) print('Check scores...') print('OOF score: {}'.format(acc_score(train_data['Survived'].values, oof_pred.data[:, 0])) )
Titanic - Machine Learning from Disaster
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<normalization><EOS>
submission['Survived'] =(test_pred.data[:, 0] > 0.5 ).astype(int) submission.to_csv('automl_utilized_600.csv', index = False )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<data_type_conversions>
import numpy as np import pandas as pd import matplotlib.pyplot as plt import seaborn as sns import random from keras.models import Sequential from keras.layers.core import Dense from keras.optimizers import adam from keras.wrappers.scikit_learn import KerasClassifier from sklearn.model_selection import GridSearchCV fr...
Titanic - Machine Learning from Disaster
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class IonDataset(Dataset): def __init__(self, data, labels=None, type='train', transform=None): self.data = data self.labels = labels self.type = type self.transform = transform def __getitem__(self, i): signal = self.data[i].astype(np.float32) if self.type == 'train': label = self.labels[i].astype(np.int64) if self....
train_titanic = pd.read_csv(".. /input/titanic/train.csv") real_test_titanic = pd.read_csv(".. /input/titanic/test.csv")
Titanic - Machine Learning from Disaster
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class SEModule(nn.Module): def __init__(self, in_channels, reduction=4): super().__init__() self.conv1 = nn.Conv1d(in_channels, in_channels//reduction, kernel_size=1, padding=0) self.conv2 = nn.Conv1d(in_channels//reduction, in_channels, kernel_size=1, padding=0) def forward(self, x): s = F.adaptive_avg_pool1d(x, 1) ...
train_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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class ClassificationMeter: def __init__(self, nCls, eps=1e-5, names=None): self.nCls = nCls self.names = names self.eps = eps self.N = 0 self.table = np.zeros(( self.nCls, 4), dtype=np.int32) self._measure = None def clear(self): self.N = 0 self.table = np.zeros(( self.nCls, 4), dtype=np.int32) def prepare_inputs(s...
randomvalue = [i for i in range(age_sd,age_mean)] for _ in range(train_titanic.isnull().sum().Age): number_to_insert = choice(randomvalue) train_titanic['Age'].fillna(number_to_insert, inplace = True )
Titanic - Machine Learning from Disaster
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if TRAIN: batch = 1; a = 500000*(batch-1); b = 500000*batch batch = 2; c = 500000*(batch-1); d = 500000*batch X_train_1s = np.concatenate([train.signal.values[a:b],train.signal.values[c:d]] ).reshape(( -1,1)) y_train_1s = np.concatenate([train.open_channels.values[a:b],train.open_channels.values[c:d]] ).reshape(( -1,1)...
train_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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if PREDICT: sub = pd.read_csv(".. /input/liverpool-ion-switching/sample_submission.csv", dtype={'time':str}) predictors = {} for num_classes, model_name in zip( np.array([1, 1, 3, 5, 10])+1, ['1s', '1f', '3', '5', '10'] ): if not ENSEMBLE: models = [Unet(num_classes=num_classes),] predictor = Predictor(device, model...
print("The most frequent value in 'Embarked' column is :", train_titanic['Embarked'].value_counts().idxmax() )
Titanic - Machine Learning from Disaster
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import pandas as pd import numpy as np from cuml.ensemble import RandomForestRegressor from sklearn.pipeline import make_pipeline from sklearn.base import BaseEstimator, TransformerMixin import cudf<prepare_x_and_y>
train_titanic['Embarked'] = train_titanic['Embarked'].fillna(train_titanic['Embarked'].value_counts().idxmax()) train_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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class ShiftedFeatureMaker(BaseEstimator, TransformerMixin): def __init__(self, periods=[1], column="signal", add_minus=False, fill_value=None, copy=True): self.periods = periods self.column = column self.add_minus = add_minus self.fill_value = fill_value self.copy = copy def fit(self, X, y): return self def transform...
real_test_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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%%time shifted_rfc = make_pipeline( ShiftedFeatureMaker( periods=range(1, 20), add_minus=True, fill_value=0 ), ColumnDropper( columns=["open_channels", "time" ] ), RandomForestRegressor( n_estimators=150, max_depth=19, max_features=10, split_algo=0, bootstrap=False ) ) train, test = read_input() train, test = a...
age_mean_test = int(( round(real_test_titanic['Age'].mean() ,2))) age_sd_test = int(round(real_test_titanic['Age'].std() ,2)) randomvalue = [i for i in range(age_sd_test,age_mean_test)] for _ in range(real_test_titanic.isnull().sum().Age): number_to_insert = choice(randomvalue) real_test_titanic['Age'].fillna(number_...
Titanic - Machine Learning from Disaster
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!pip install tensorflow_addons==0.9.1<import_modules>
real_test_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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Add, AveragePooling1D, Multiply, GRU, GRUCell, LSTMCell, SimpleRNNCell, SimpleRNN, TimeDistributed, RNN, RepeatVector, Conv1D, MaxPooling1D, Concatenate, GlobalAveragePooling1D, UpSampling1D) warnings.simplefilter('ignore') warnings.filterwarnings('ignore') pd.set_option('display.max_columns', 1000) pd.set_option('...
real_test_titanic['Fare'] = real_test_titanic['Fare'].fillna(int(real_test_titanic['Fare'].mean()))
Titanic - Machine Learning from Disaster
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def plot_cm(y_true, y_pred, title): figsize=(14,14) y_pred = y_pred.astype(int) cm = confusion_matrix(y_true, y_pred, labels=np.unique(y_true)) cm_sum = np.sum(cm, axis=1, keepdims=True) cm_perc = cm / cm_sum.astype(float)* 100 annot = np.empty_like(cm ).astype(str) nrows, ncols = cm.shape for i in range(nrows): fo...
real_test_titanic.isnull().sum()
Titanic - Machine Learning from Disaster
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def Classifier(shape_): def wave_block(x, filters, kernel_size, n): dilation_rates = [2**i for i in range(n)] x = Conv1D(filters = filters, kernel_size = 1, padding = 'same' )(x) res_x = x for dilation_rate in dilation_rates: tanh_out = Conv1D(filters = filters, kernel_size = kernel_size, padding = 'same', activation ...
total_passengers = train_titanic['Sex'].count() total_males = train_titanic['Sex'].value_counts() ['male'] total_females = train_titanic['Sex'].value_counts() ['female'] survived_males = train_titanic.query('Survived==1')['Sex'].value_counts() ['male'] survived_females = train_titanic.query('Survived==1')['Sex'].value_...
Titanic - Machine Learning from Disaster
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EPOCHS = 70 NNBATCHSIZE = 16 GROUP_BATCH_SIZE = 4000 SEED = 321 LR = 0.001 SPLITS = 5 SLIDE = 800 seed_everything(SEED )<load_from_csv>
train_titanic = train_titanic.drop(['Ticket', 'Cabin','Name'], axis=1) real_test_titanic = real_test_titanic.drop(['Ticket', 'Cabin','Name'], axis=1 )
Titanic - Machine Learning from Disaster
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train = pd.read_csv("/kaggle/input/remove-trends-giba/train_clean_giba.csv", usecols=["signal","open_channels"], dtype={'signal': np.float32, 'open_channels':np.int32}) test = pd.read_csv("/kaggle/input/remove-trends-giba/test_clean_giba.csv", usecols=["signal"], dtype={'signal': np.float32}) train['group'] = np.aran...
train_survived = train_titanic['Survived']
Titanic - Machine Learning from Disaster
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train["mlp"] = np.load("/kaggle/input/into-the-wild-mlp-regression/mlp_reg.npz")['valid'] test["mlp"] = np.load("/kaggle/input/into-the-wild-mlp-regression/mlp_reg.npz")['test'] train["lgb"] = np.load("/kaggle/input/into-the-wild-lgb-regression/lgb_reg.npz")['valid'] test["lgb"] = np.load("/kaggle/input/into-the-wild-l...
train_titanic['Sex'] = train_titanic['Sex'].map({'female': 0, 'male': 1} ).astype(int) train_titanic['Embarked'] = train_titanic['Embarked'].map({'S': 0, 'C': 1, 'Q': 2} ).astype(int )
Titanic - Machine Learning from Disaster
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for item in ['signal','mlp','lgb']: if item in train.columns: print(item) train_input_mean = train[item].mean() train_input_sigma = train[item].std() train[item]=(train[item] - train_input_mean)/ train_input_sigma test[item] =(test[item] - train_input_mean)/ train_input_sigma train['batch'] = train.groupby(train.index...
real_test_titanic['Sex'] = real_test_titanic['Sex'].map({'female': 0, 'male': 1} ).astype(int) real_test_titanic['Embarked'] = real_test_titanic['Embarked'].map({'S': 0, 'C': 1, 'Q': 2} ).astype(int )
Titanic - Machine Learning from Disaster
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def run_cv_model_by_batch(train, test, n_splits, feats, nn_epochs, nn_batch_size): seed_everything(SEED) K.clear_session() config = tf.compat.v1.ConfigProto(intra_op_parallelism_threads=1,inter_op_parallelism_threads=1) sess = tf.compat.v1.Session(graph=tf.compat.v1.get_default_graph() , config=config) tf.compat.v1....
train_titanic = train_titanic.set_index('PassengerId') real_test_titanic = real_test_titanic.set_index('PassengerId' )
Titanic - Machine Learning from Disaster
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preds, oof, oof_tta = run_cv_model_by_batch(train, test, n_splits=5, feats=feats, nn_epochs=EPOCHS, nn_batch_size=NNBATCHSIZE )<compute_test_metric>
X = train_titanic.drop(['Survived'], axis = 1) y = train_titanic["Survived"] x_train, x_test, y_train, y_test = train_test_split(X, y, test_size = 0.10) print("Dimension of Train data :", x_train.shape) print("Dimension of Test data :", x_test.shape )
Titanic - Machine Learning from Disaster
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oof_df = train[['signal','open_channels']].copy() oof_df["oof"] = np.argmax(oof+oof_tta, axis=1) oof_df = oof_df.head(5000_000) gc.collect() oof_f1 = f1_score(oof_df['open_channels'],oof_df['oof'],average = 'macro') oof_recall = recall_score(oof_df['open_channels'],oof_df['oof'],average = 'macro') oof_precision = p...
scaler = MinMaxScaler() x_train_scaled = scaler.fit_transform(x_train) x_test_scaled = scaler.transform(x_test )
Titanic - Machine Learning from Disaster
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np.savez_compressed(f'wavenet.npz',valid=oof, test=preds,tta=oof_tta )<save_to_csv>
mlp_model = MLPClassifier(hidden_layer_sizes=(150,150,150),activation ='relu', max_iter=500, alpha=0.0001, solver='sgd', verbose=10, learning_rate = 'adaptive', momentum=0.9) mlp_model.fit(x_train_scaled, y_train) y_pred = mlp_model.predict(x_test_scaled)
Titanic - Machine Learning from Disaster
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sample_submission = pd.read_csv('/kaggle/input/liverpool-ion-switching/sample_submission.csv', dtype={'time': np.float32}) sample_submission['open_channels'] = np.argmax(preds, axis=1 ).astype(int) sample_submission.to_csv(f'submission.csv', index=False, float_format='%.4f') print(sample_submission.open_channels.mea...
confusion = confusion_matrix(y_test, y_pred) print('Confusion Matrix ', confusion) print('Accuracy: {:.2f}'.format(accuracy_score(y_test, y_pred)) )
Titanic - Machine Learning from Disaster
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df = pd.read_csv("/kaggle/input/remove-trends-giba/train_clean_giba.csv", usecols=["signal","open_channels"], dtype={'signal': np.float32, 'open_channels':np.int32}) test_df = pd.read_csv("/kaggle/input/remove-trends-giba/test_clean_giba.csv", usecols=["signal"], dtype={'signal': np.float32}) df.shape, test_df.shape<...
classifier = MLPClassifier() parameter_space = { 'hidden_layer_sizes': [(50,50,50),(100,100,100),(150,150,150),(200,200,200)], 'activation': ['tanh', 'relu', 'logistic'], 'solver': ['sgd', 'adam'], 'alpha': [0.0001, 0.05], 'learning_rate': ['constant','adaptive'], }
Titanic - Machine Learning from Disaster
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df['group'] = np.arange(df.shape[0])//500_000 aug_df = df[df["group"] == 5].copy() aug_df["group"] = 10 for col in ["signal", "open_channels"]: aug_df[col] += df[df["group"] == 8][col].values df = df.append(aug_df, sort=False ).reset_index(drop=True) df.shape del aug_df gc.collect()<feature_engineering>
model = GridSearchCV(classifier, parameter_space, n_jobs=-1, cv=3) model.fit(x_train_scaled, y_train )
Titanic - Machine Learning from Disaster
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wavenet_oof =(np.load("/kaggle/input/into-the-wild-wavenet/wavenet.npz")["valid"] + np.load("/kaggle/input/into-the-wild-wavenet/wavenet.npz")["tta"])/2 wavenet_test = np.load("/kaggle/input/into-the-wild-wavenet/wavenet.npz")["test"] for i in range(wavenet_oof.shape[1]): df["prob_{}".format(i)] = wavenet_oof[:, i] tes...
print('Best parameters calculated :', model.best_params_ )
Titanic - Machine Learning from Disaster
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def get_margin(x): return np.log(x) M = get_margin(wavenet_oof) M_test = get_margin(wavenet_test )<import_modules>
predicted_y = model.predict(x_test_scaled)
Titanic - Machine Learning from Disaster
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f1_score(df["open_channels"], df["wave_pred"], average="macro" )<compute_test_metric>
confusion = confusion_matrix(y_test, predicted_y) print('Confusion Matrix after hyperparameter optimization ', confusion) print('Accuracy after hyperparameter optimization: {:.2f}'.format(accuracy_score(y_test, predicted_y)) )
Titanic - Machine Learning from Disaster
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log_loss(df["open_channels"], wavenet_oof )<feature_engineering>
layer1 = Dense(units = 10,activation = 'relu', input_dim = 7) layer2 = Dense(units = 15, activation = 'relu') layer3 = Dense(units = 2, activation = 'sigmoid') model = Sequential([layer1, layer2, layer3]) model.compile(optimizer = 'adam', loss = 'sparse_categorical_crossentropy', metrics = ['accuracy']) clf = mode...
Titanic - Machine Learning from Disaster
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NUM_FOLDS = 5 df["mg"] = df.index//100_000 test_df["mg"] = test_df.index//100_000 df["fold"] = df["mg"] % NUM_FOLDS<categorify>
predicted_on_test = model.predict_classes(x_test_scaled, batch_size = 25) confusion = confusion_matrix(y_test, predicted_on_test) print('Confusion Matrix ', confusion) print('Accuracy: {:.2f}'.format(accuracy_score(y_test, predicted_on_test)) )
Titanic - Machine Learning from Disaster
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for data in [df, test_df]: y_time_since = np.empty(( data.shape[0], 11)) y_time_till = np.empty(( data.shape[0], 11)) y_pred = data["wave_pred"].values for sec in range(data.shape[0]//100_000): begin, end = sec*100_000,(sec+1)*100_000 last_seen = np.array([np.nan]*11) for index in range(begin, end): y_time_since[index...
real_test_titanic_scaled = scaler.transform(real_test_titanic )
Titanic - Machine Learning from Disaster
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features = ["signal", "noise", "prob_0", "prob_1", "prob_2", "prob_3", "prob_4", "prob_5", "prob_6", "prob_7", "prob_8", "prob_9", "prob_10"] for i in range(11): f = "time_since_{}".format(i) features.append(f) f = "time_till_{}".format(i) features.append(f )<prepare_x_and_y>
predicted_on_actual = model.predict_classes(real_test_titanic_scaled, batch_size = 25 )
Titanic - Machine Learning from Disaster
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<compute_test_metric><EOS>
actual_test = pd.read_csv(".. /input/titanic/test.csv") for_submission = pd.DataFrame({"PassengerId": actual_test['PassengerId'], "Survived":predicted_on_actual.astype(int)}) for_submission.to_csv("prediction_file_by_arunjith.csv",index=False )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<compute_test_metric>
!/opt/conda/bin/python3.7 -m pip install --upgrade pip !pip uninstall -y typing !pip install carefree-learn
Titanic - Machine Learning from Disaster
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df["xgb_pred"] = np.argmax(y_oof, axis=1) f1_score(df["open_channels"], df["xgb_pred"], average="macro" )<compute_train_metric>
file_folder = "/kaggle/input/titanic" working_folder = "/kaggle/working"
Titanic - Machine Learning from Disaster
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f1_score(df.iloc[:5_000_000]["open_channels"], df.iloc[:5_000_000]["xgb_pred"], average="macro" )<feature_engineering>
def scoring(raw_metrics, mean, std): return mean + std def test() : train_file = f"{file_folder}/train.csv" test_file = f"{file_folder}/test.csv" data_config = {"label_name": "Survived"} hpo = cflearn.tune_with( train_file, model="tree_dnn", temp_folder=f"{working_folder}/__hpo__", task_type=TaskTypes.CLASSIFICATION, ...
Titanic - Machine Learning from Disaster
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df["ensemble_pred"] = df[["wave_pred", "xgb_pred"]].max(axis=1) f1_score(df["open_channels"], df["ensemble_pred"], average="macro" )<compute_test_metric>
experiments = results.experiments ms = {k: list(map(cflearn.load_task, v)) for k, v in experiments.tasks.items() } print(ms )
Titanic - Machine Learning from Disaster
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f1_score(df.iloc[:5_000_000]["open_channels"], df.iloc[:5_000_000]["ensemble_pred"], average="macro" )<feature_engineering>
model = ms["tree_dnn"][0].model data = model.tr_data print("=== Raw ===") print(f"Feature dimension : {len(data.raw.x[0])}") print() for line in data.raw.x[:3]: print(line) print(data.raw.y[:3]) print() print("=== Converted ===") print(f"Feature dimension : {data.converted.x.shape[1]}") print(data.converted.x[:3]...
Titanic - Machine Learning from Disaster
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<save_to_csv><EOS>
print(model.encoders )
Titanic - Machine Learning from Disaster
972,273
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<predict_on_test>
import csv import re import numpy as np import pandas as pd import tensorflow as tf import matplotlib.pyplot as plt from tensorflow.python.framework import ops from sklearn import preprocessing from sklearn.model_selection import train_test_split
Titanic - Machine Learning from Disaster