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dls = dblock.dataloaders(df )<define_variables>
temp = full[full.groupby('Ticket' ).Cabin.transform(lambda x: x.fillna('' ).nunique())>1] temp.sort_values(by=['Ticket','Cabin'], inplace=True) temp[['Cabin','Embarked', 'Fare', 'Pclass','Name', 'Ticket']].head(10 )
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dls.show_batch(nrows=3, ncols=3 )<train_model>
full['Embarked'] = full.Embarked.fillna(full.Embarked.mode() [0]) full['ppFare'] = full.groupby(['Pclass', 'Embarked'] ).ppFare.transform(lambda x: x.fillna(x.median())) FareToFill = full.ppFare * full.ppTicket full.loc[full.Fare.isna() , 'Fare'] = FareToFill[full.Fare.isna() ]
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<train_model>
full['nFamily'] = full.groupby(['Last', 'Ticket_Type', 'Embarked'] ).Last.transform('count') to_impute = full[['Age', 'ppFare', 'Parch', 'Pclass', 'SibSp', 'hasNickname', 'hasParenthesis', 'ppTicket', 'nFamily']] dummy = pd.get_dummies(data=full[['Title','Embarked', 'Sex','Ticket_Type']]) to_impute = pd.concat([to_im...
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<load_pretrained>
full['Title'] = full['Title'].replace(['Don.', 'Rev.', 'Jonkheer.', 'Sir.'], 'Honor') full['Title'] = full['Title'].replace(['Dr.', 'Col.', 'Major.', 'Capt.'], 'Profession') full['Title'] = full['Title'].replace(['Ms.', 'Mlle.', 'the Countess.', 'Lady.'], 'Miss.') full['Title'] = full['Title'].replace(['Mme.', 'Dona...
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learn = load_learner(cassavaModelPath+'CassavaDiseaseModelResnet34.pkl') learn.export(cassavaOutputPath+'CassavaDiseaseModelResnet34.pkl') learn = load_learner(cassavaOutputPath+'CassavaDiseaseModelResnet34.pkl' )<save_to_csv>
full['isMarried'] = full.Title.isin(['Mrs.', 'Mme.', 'Dona.']) full['FamilySize'] = full ['SibSp'] + full['Parch'] + 1 full['CabinGroup'] = full['Cabin_Level'].replace(['A','B'], 'AB') full['CabinGroup'] = full['CabinGroup'].replace(['C','F'], 'CF') full['CabinGroup'] = full['CabinGroup'].replace(['D','E'], 'DE') f...
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print('Computing predictions...') test_files = get_image_files(cassavaPath+'test_images') predictions_ResultArray = [None for tempX in range(len(test_files)) ] predictions_InputArray = [None for tempX in range(len(test_files)) ] for test_idx in range(0,len(test_files)) : predictions = learn.predict(test_files[test_id...
full2 = full[['PassengerId','Survived', 'Age','Pclass_cat', 'Embarked', 'Sex', 'Title', 'Cabin_Level', 'ppTicket', 'ppFare', 'Survival_Rate', 'isMarried', 'hasSurvivalInfo', 'FamilySize', 'Parch', 'SibSp', 'nFamily', 'GroupCat']] dummyVars = full2.select_dtypes(include=['object','bool','category'] ).columns full3 = pd....
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df_sample_submission = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv') df_exact_submission = pd.read_csv(cassavaOutputPath+'submission.csv') print(df_sample_submission.compare(df_exact_submission)) print(df_sample_submission.equals(df_exact_submission)) <install_modules>
clf_ET = ExtraTreesClassifier(random_state=0, bootstrap=True, oob_score=True) sss = model_selection.StratifiedShuffleSplit(n_splits=10, test_size=0.33, random_state= 0) sss.get_n_splits(X_train, Y_train) parameters = {'n_estimators' : np.r_[10:210:10], 'max_depth': np.r_[1:6] } grid = model_selection.GridSearchCV(cl...
Titanic - Machine Learning from Disaster
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%%time !cp.. /input/rapids/rapids.0.11.0 /opt/conda/envs/rapids.tar.gz !cd /opt/conda/envs/ && tar -xzvf rapids.tar.gz sys.path = ["/opt/conda/envs/rapids/lib"] + ["/opt/conda/envs/rapids/lib/python3.6"] + ["/opt/conda/envs/rapids/lib/python3.6/site-packages"] + sys.path !cp /opt/conda/envs/rapids/lib/libxgboost.so /op...
p = a[a.param_max_depth==4].sort_values(by='mean_test_score', ascending=False ).iloc[0] print("Best mean test score: %f using %s" %(p.mean_test_score, p.params)) bst_ET = grid.best_estimator_ bst_ET.set_params(**p.params) bst_ET.fit(X_train,Y_train) pred_ET = bst_ET.predict(X_test) test['Survived'] = pred_ET.astype(...
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from cuml.linear_model import Ridge <load_from_csv>
warnings.filterwarnings('ignore' )
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train = cudf.read_csv('.. /input/multi-cat-encodings/X_train_te.csv') test = cudf.read_csv('.. /input/multi-cat-encodings/X_test_te.csv') sample_submission = cudf.read_csv('.. /input/cat-in-the-dat-ii/sample_submission.csv' )<define_variables>
sns.set_style('whitegrid' )
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train_oof = cp.zeros(( train.shape[0],)) test_preds = 0 train_oof.shape<compute_train_metric>
train_data = pd.read_csv('/kaggle/input/titanic/train.csv') test_data = pd.read_csv('/kaggle/input/titanic/test.csv' )
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def auc_cp(y_true,y_pred): y_true = y_true.astype('float32') ids = np.argsort(-y_pred) y_true = y_true[ids.values] y_pred = y_pred[ids.values] zero = 1 - y_true acc_one = cp.cumsum(y_true) acc_zero = cp.cumsum(zero) sum_one = cp.sum(y_true) sum_zero = cp.sum(zero) tpr = acc_one/sum_one fpr = acc_zero/sum_zero ret...
train_data['Embarked'] = train_data['Embarked'].fillna('S') test_data['Embarked'] = test_data['Embarked'].fillna('S' )
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%%time n_splits = 5 kf = KFold(n_splits=n_splits, random_state=137) scores = [] for jj,(train_index, val_index)in enumerate(kf.split(train)) : print("Fitting fold", jj+1) train_features = train.loc[train['fold_column'] != jj][features] train_target = train.loc[train['fold_column'] != jj]['target'].values.astype(float...
def fix_age(blob): Age = blob[0] Pclass = blob[1] Sex = blob[2] if pd.isnull(Age): if Sex == 'male': if Pclass == 1: return 40 elif Pclass == 2: return 30 else: return 25 else: if Pclass == 1: return 35 elif Pclass == 2: return 27 else: return 22 else: return Age
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sample_submission['target'] = test_preds sample_submission.to_csv('submission.csv', index=False )<save_model>
train_data['Age'] = train_data[['Age','Pclass','Sex']].apply(fix_age,axis=1) test_data['Age'] = test_data[['Age','Pclass','Sex']].apply(fix_age,axis=1 )
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cp.save('test_preds', test_preds) cp.save('train_oof', train_oof )<import_modules>
train_data["Fare"] = train_data["Fare"].fillna(train_data["Fare"].median()) test_data["Fare"] = test_data["Fare"].fillna(test_data["Fare"].median() )
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import scipy import pandas as pd from sklearn.linear_model import LogisticRegression<load_from_csv>
train_data['Sex'] = train_data['Sex'].fillna('male') test_data['Sex'] = test_data['Sex'].fillna('male' )
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D0 = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/train.csv", index_col="id") D_test = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/test.csv", index_col="id") y_train = D0["target"] D = D0.drop(columns="target") test_ids = D_test.index D_all = pd.concat([D, D_test]) num_train = len(D) print(f"D_all.shape = {D_all....
def add_family(blob): temp = blob.split(' ')[0] temp = temp[:len(temp)-1] return temp
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ord_maps = { "ord_0": {val: i for i, val in enumerate([1, 2, 3])}, "ord_1": { val: i for i, val in enumerate( ["Novice", "Contributor", "Expert", "Master", "Grandmaster"] ) }, "ord_2": { val: i for i, val in enumerate( ["Freezing", "Cold", "Warm", "Hot", "Boiling Hot", "Lava Hot"] ) }, **{col: {val: i for i, val ...
train_data['FamilyName'] = train_data['Name'].apply(add_family )
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oh_cols = D_all.columns.difference(ord_maps.keys() - {"day", "month"}) print(f"OneHot encoding {len(oh_cols)} columns") one_hot = pd.get_dummies( D_all[oh_cols], columns=oh_cols, drop_first=True, dummy_na=True, sparse=True, dtype="int8", ).sparse.to_coo()<categorify>
test_data['FamilyName'] = test_data['Name'].apply(add_family )
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ord_cols = pd.concat([D_all[col].map(ord_map ).fillna(max(ord_map.values())//2 ).astype("float32")for col, ord_map in ord_maps.items() ], axis=1) ord_cols /= ord_cols.max() ord_cols_sqr = 4*(ord_cols - 0.5)**2<concatenate>
train_data['FamilyName'].value_counts()
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X = scipy.sparse.hstack([one_hot, ord_cols, ord_cols_sqr] ).tocsr() print(f"X.shape = {X.shape}") X_train = X[:num_train] X_test = X[num_train:]<save_to_csv>
def apply_name_suffix(blob): temp = blob.split(' ')[1] return temp
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clf=LogisticRegression(C=0.05, solver="lbfgs", max_iter=5000) clf.fit(X_train, y_train) pred = clf.predict_proba(X_test)[:, 1] pd.DataFrame({"id": test_ids, "target": pred} ).to_csv("submission.csv", index=False )<install_modules>
train_data['NameSuffix'] = train_data['Name'].apply(apply_name_suffix )
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!pip install --no-warn-conflicts -q deepctr<import_modules>
test_data['NameSuffix'] = test_data['Name'].apply(apply_name_suffix )
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warnings.simplefilter('ignore' )<load_from_csv>
def fix_name_suffix(blob): temp = ['Mr.','Miss.','Mrs.','Master.','Dr.','Rev.'] if blob in temp: return blob[0:len(blob)-1] else: return 'no_suffix'
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train = pd.read_csv('.. /input/cat-in-the-dat-ii/train.csv') test = pd.read_csv('.. /input/cat-in-the-dat-ii/test.csv' )<feature_engineering>
train_data['NameSuffix'] = train_data['NameSuffix'].apply(fix_name_suffix) test_data['NameSuffix'] = test_data['NameSuffix'].apply(fix_name_suffix )
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test['target'] = -1<concatenate>
del train_data['Name'] del test_data['Name']
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data = pd.concat([train, test] ).reset_index(drop=True )<feature_engineering>
train_data.Ticket = [i[0] for i in train_data.Ticket.astype("str")] test_data.Ticket = [i[0] for i in test_data.Ticket.astype("str")]
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data['null'] = data.isna().sum(axis=1 )<feature_engineering>
train_data['Ticket'] = train_data['Ticket'].apply(lambda x: x if x in ['S','P','C','A','W','F','L'] else 'G' )
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sparse_features = [feat for feat in train.columns if feat not in ['id','target']] data[sparse_features] = data[sparse_features].fillna('-1', )<categorify>
test_data['Ticket'] = test_data['Ticket'].apply(lambda x: x if x in ['S','P','C','A','W','F','L'] else 'G' )
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for feat in sparse_features: lbe = LabelEncoder() data[feat] = lbe.fit_transform(data[feat].fillna('-1' ).astype(str ).values )<prepare_x_and_y>
train_data.Cabin = [i[0] for i in train_data.Cabin.astype("str")] test_data.Cabin = [i[0] for i in test_data.Cabin.astype("str")]
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train = data[data.target != -1].reset_index(drop=True) test = data[data.target == -1].reset_index(drop=True )<count_unique_values>
def most_common(lst): return max(set(lst), key=lst.count) def fix_cabin(blob): temp = blob.tolist() temp1 = [] for i in temp : if i == 'n': continue else: temp1.append(i) if temp1 == [] : return 'Z' else: temp1 = most_common(temp1) return temp1
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fixlen_feature_columns = [SparseFeat(feat, data[feat].nunique())for feat in sparse_features] dnn_feature_columns = fixlen_feature_columns linear_feature_columns = fixlen_feature_columns feature_names = get_feature_names(linear_feature_columns + dnn_feature_columns )<compute_test_metric>
train_data['Cabin'] = train_data['Cabin'].groupby(train_data['FamilyName'] ).transform(fix_cabin) test_data['Cabin'] = test_data['Cabin'].groupby(test_data['FamilyName'] ).transform(fix_cabin )
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def auc(y_true, y_pred): def fallback_auc(y_true, y_pred): try: return roc_auc_score(y_true, y_pred) except: return 0.5 return tf.py_function(fallback_auc,(y_true, y_pred), tf.double )<compute_train_metric>
del train_data['PassengerId']
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def focal_loss(gamma=2., alpha=.25): def focal_loss_fixed(y_true, y_pred): pt_1 = tf.where(tf.equal(y_true, 1), y_pred, tf.ones_like(y_pred)) pt_0 = tf.where(tf.equal(y_true, 0), y_pred, tf.zeros_like(y_pred)) return -K.mean(alpha * K.pow(1.- pt_1, gamma)* K.log(K.epsilon() +pt_1)) -K.mean(( 1-alpha)* K.pow(pt_0, gamma...
from sklearn.pipeline import Pipeline , FeatureUnion from sklearn.preprocessing import FunctionTransformer from sklearn.feature_extraction import DictVectorizer
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def custom_gelu(x): return 0.5 * x *(1 + tf.tanh(tf.sqrt(2 / np.pi)*(x + 0.044715 * tf.pow(x, 3)))) get_custom_objects().update({'custom_gelu': Activation(custom_gelu)} )<choose_model_class>
list_of_obj = [] list_of_num = [] for i in train_data.columns : if train_data[i].dtypes == 'object': list_of_obj.append(i) else: if i == 'Survived': continue else: list_of_num.append(i )
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class WarmUpLearningRateScheduler(tf.keras.callbacks.Callback): def __init__(self, warmup_batches, init_lr, verbose=0): super(WarmUpLearningRateScheduler, self ).__init__() self.warmup_batches = warmup_batches self.init_lr = init_lr self.verbose = verbose self.batch_count = 0 self.learning_rates = [] def on_batch_e...
def return_text(df): return df[list_of_obj]
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class CyclicLR(keras.callbacks.Callback): def __init__(self, base_lr=0.001, max_lr=0.006, step_size=2000., mode='triangular', gamma=1., scale_fn=None, scale_mode='cycle'): super(CyclicLR, self ).__init__() self.base_lr = base_lr self.max_lr = max_lr self.step_size = step_size self.mode = mode self.gamma = gamma if scal...
get_text = FunctionTransformer(func=return_text,validate=False )
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target = ['target'] N_Splits = 50 Verbose = 0 Epochs = 10 SEED = 2020 Batch_S_T = 128 Batch_S_P = 512<prepare_x_and_y>
def return_num(df): return df[list_of_num]
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oof_pred_deepfm = np.zeros(( len(train),)) y_pred_deepfm = np.zeros(( len(test),)) skf = StratifiedKFold(n_splits=N_Splits, shuffle=True, random_state=SEED) for fold,(tr_ind, val_ind)in enumerate(skf.split(train, train[target])) : X_train, X_val = train[sparse_features].iloc[tr_ind], train[sparse_features].iloc[val_in...
get_numerical = FunctionTransformer(func=return_num,validate=False )
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print(f'OOF AUC : {round(roc_auc_score(train.target.values, oof_pred_deepfm), 5)}' )<save_to_csv>
num_pipeline = Pipeline([ ('numerical',get_numerical), ] )
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test_idx = test.id.values submission = pd.DataFrame.from_dict({ 'id': test_idx, 'target': y_pred_deepfm }) submission.to_csv('submission.csv', index=False) print('Submission file saved!' )<save_model>
def return_dict(blob): return blob.to_dict("records" )
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np.save('oof_pred_deepfm.npy',oof_pred_deepfm) np.save('y_pred_deepfm.npy', y_pred_deepfm )<set_options>
text_pipeline = Pipeline([ ('textual',get_text), ('dictifier',FunctionTransformer(func=return_dict,validate=False)) , ('vectorizer',DictVectorizer(sort=False)) , ] )
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print(h2o.__version__) h2o.init(max_mem_size='16G' )<load_from_csv>
from sklearn.model_selection import train_test_split
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%%time train = h2o.import_file(".. /input/multi-cat-encodings/X_train_te.csv") test = h2o.import_file(".. /input/multi-cat-encodings/X_test_te.csv" )<feature_engineering>
from sklearn.model_selection import train_test_split
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x = test.columns y = 'target' train[y] = train[y].asfactor()<train_model>
X_train, X_test, y_train, y_test = train_test_split( ...train_data.drop(['Survived'],axis=1), train_data['Survived'], test_size=0.2, random_state=42 )
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aml = H2OAutoML(max_models=50, seed=47, max_runtime_secs=30000) aml.train(x=x, y=y, training_frame=train, fold_column='fold_column' )<find_best_params>
from sklearn.metrics import confusion_matrix , classification_report, roc_auc_score
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aml.leader<predict_on_test>
import xgboost as xgb
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preds = aml.predict(test) preds['p1'].as_data_frame().values.flatten().shape<load_from_csv>
xgb_model = xgb.XGBClassifier(silent=False, scale_pos_weight=1, learning_rate=0.01, colsample_bytree = 0.4, subsample = 0.8, objective='binary:logistic', n_estimators=500, reg_alpha = 0.3, gamma=10, eval_metric = 'auc' )
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sample_submission = pd.read_csv('.. /input/cat-in-the-dat-ii/sample_submission.csv') sample_submission.shape<save_to_csv>
pipeline = Pipeline([ ('union',FeatureUnion( transformer_list = [ ('num',num_pipeline), ('text',text_pipeline) ])) , ('clf',xgb_model) ] )
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sample_submission['target'] = preds['p1'].as_data_frame().values sample_submission.to_csv('h2o_automl_submission_4.csv', index=False )<load_from_csv>
pipeline.fit(X_train,y_train )
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for dirname, _, filenames in os.walk('/kaggle/input'): for filename in filenames: print(os.path.join(dirname, filename)) test = pd.read_csv('/kaggle/input/cat-in-the-dat-ii/test.csv') train = pd.read_csv('/kaggle/input/cat-in-the-dat-ii/train.csv' )<categorify>
preds_xgb = pipeline.predict(X_test )
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%%time def random_permutation(x): perm = np.random.permutation(len(x)) x = x.iloc[perm].reset_index(drop=True) return x train = random_permutation(train) test = random_permutation(test) train_ids = train.id test_ids = test.id train.drop('id', 1, inplace=True) test.drop('id', 1, inplace=True) train_targets = train....
print(confusion_matrix(y_test,preds_xgb)) print(roc_auc_score(y_test,preds_xgb)) print(classification_report(y_test,preds_xgb))
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%%time bin_recode = {0: 0, 1: 1, 'F':0, 'T':1, 'N':0, 'Y':1} for i in range(5): train[f'bin_{i}'] = train[f'bin_{i}'].map(bin_recode) test[f'bin_{i}'] = test[f'bin_{i}'].map(bin_recode) levels = { 'Novice':0, 'Contributor':1, 'Expert':2, 'Master':3, 'Grandmaster':4 } train['ord_1'] = train['ord_1'].map(levels) test[...
from sklearn.model_selection import RandomizedSearchCV
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%%time noms_0_4 = ['nom_0', 'nom_1', 'nom_2', 'nom_3', 'nom_4'] train = pd.get_dummies(train, columns = noms_0_4, prefix = noms_0_4, drop_first=True, sparse=True, dtype=np.int8) test = pd.get_dummies(test, columns = noms_0_4, prefix = noms_0_4, drop_first=True, sparse=True, dtype=np.int8 )<categorify>
params = { "clf__learning_rate" : list(np.arange(0.05,0.6,0.05)) , "clf__max_depth" : list(np.arange(1,20,2)) , "clf__min_child_weight" : list(np.arange(1,9,1)) , "clf__gamma" : list(np.arange(1,20,1)) , "clf__colsample_bytree" : [ 0.3, 0.4, 0.5 , 0.7 ], "clf__subsample" : list(np.arange(0.1,0.9,0.1)) , "clf__n_estimat...
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%%time for i in [5,6,7,8,9]: cbe = CatBoostEncoder() train[f'nom_{i}'] = cbe.fit_transform(train[f'nom_{i}'], train_targets) test[f'nom_{i}'] = cbe.transform(test[f'nom_{i}']) cbe = CatBoostEncoder() train['ord_5'] = cbe.fit_transform(train['ord_5'], train_targets) test['ord_5'] = cbe.transform(test['ord_5'] )<train...
grid = RandomizedSearchCV(pipeline, param_distributions=params, scoring='roc_auc',cv=5,verbose=5 )
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%%time cb = CatBoostClassifier(eval_metric='AUC', learning_rate=0.1, depth=3, l2_leaf_reg=5) cb.fit(train, train_targets, verbose=False )<save_to_csv>
grid.fit(X_train,y_train )
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preds = cb.predict_proba(test)[:, 1] preds_df = pd.DataFrame(list(zip(test_ids, preds)) , columns = ['id', 'target']) preds_df.sort_values(by=['id'], inplace = True) preds_df.to_csv("./submission.csv", index=False )<load_from_csv>
grid.best_params_, grid.best_score_
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train = pd.read_csv('.. /input/cat-in-the-dat-ii/train.csv') test = pd.read_csv('.. /input/cat-in-the-dat-ii/test.csv') train.sort_index(inplace=True) train_y = train['target']; test_id = test['id'] train.drop(['target', 'id'], axis=1, inplace=True); test.drop('id', axis=1, inplace=True) cat_feat_to_encode = train....
best_matrix = {'subsample': 0.30000000000000004, 'reg_alpha': 0.2, 'n_estimators': 500, 'min_child_weight': 3, 'max_depth': 9, 'learning_rate': 0.15000000000000002, 'gamma': 4, 'colsample_bytree': 0.3}
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glm = linear_model.LogisticRegression(random_state=1, solver='lbfgs', max_iter=2020, fit_intercept=True, penalty='none', verbose=0); glm.fit(train, train_y )<import_modules>
xgb_model = xgb.XGBClassifier(**best_matrix,silent=False, eval_metric = 'auc' )
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from sklearn.linear_model import ElasticNet, Lasso, BayesianRidge, LassoLarsIC, LogisticRegression from sklearn.ensemble import RandomForestRegressor, GradientBoostingRegressor from sklearn.kernel_ridge import KernelRidge from sklearn.pipeline import make_pipeline from sklearn.preprocessing import RobustScaler from skl...
finalized_model = pipeline = Pipeline([ ('union',FeatureUnion( transformer_list = [ ('num',num_pipeline), ('text',text_pipeline) ])) , ('clf',xgb_model) ] )
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n_folds = 5 def auc_score(model): kf = KFold(n_folds, shuffle= True ).get_n_splits(train.values) auc_score = cross_val_score(model, train.values, train_y, scoring = "roc_auc", cv = kf) return auc_score<choose_model_class>
X = train_data.drop(['Survived'],axis=1) y = train_data['Survived']
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lasso = make_pipeline(RobustScaler() , Lasso(alpha =0.0005, random_state=1))<choose_model_class>
finalized_model.fit(X,y )
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ENet = make_pipeline(RobustScaler() , ElasticNet(alpha=0.0005, l1_ratio=.9, random_state=3)) <choose_model_class>
final_test = test_data.drop(['PassengerId'],axis=1 )
Titanic - Machine Learning from Disaster
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KRR = KernelRidge(alpha=0.6, kernel='polynomial', degree=2, coef0=2.5 )<choose_model_class>
PassengerId = test_data['PassengerId']
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GBoost = GradientBoostingRegressor(n_estimators=3000, learning_rate=0.05, max_depth=4, max_features='sqrt', min_samples_leaf=15, min_samples_split=10, loss='huber', random_state =5 )<choose_model_class>
final_prediction = finalized_model.predict(final_test )
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<choose_model_class><EOS>
submission = pd.DataFrame({ 'PassengerId': PassengerId, 'Survived': final_prediction }) submission.to_csv(path_or_buf ="Titanic_Submission.csv", index=False )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<compute_test_metric>
import pandas as pd import numpy as np
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score = auc_score(lasso) print(" Lasso score: {:.4f}({:.4f}) ".format(score.mean() , score.std())) score = auc_score(ENet) print("ElasticNet score: {:.4f}({:.4f}) ".format(score.mean() , score.std())) score = auc_score(model_lgb) print("LGBM score: {:.4f}({:.4f}) ".format(score.mean() , score.std())) score = auc_...
train=pd.read_csv(".. /input/train.csv") test=pd.read_csv(".. /input/test.csv" )
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class average_stacking(BaseEstimator, RegressorMixin, TransformerMixin): def __init__(self,models): self.models = models def fit(self, x,y): self.model_clones = [clone(x)for x in self.models] for model in self.model_clones: model.fit(x,y) return self def predict(self, x): preds = np.column_stack([ model.predict(x)for ...
train.drop(['Name'],axis=1,inplace=True )
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averaged_models = average_stacking(models =(ENet, glm,model_lgb, lasso)) score = auc_score(averaged_models) print(" Averaged base models score: {:.4f}({:.4f}) ".format(score.mean() , score.std()))<predict_on_test>
sample_sub=pd.read_csv(".. /input/gender_submission.csv" )
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averaged_models.fit(train.values, train_y) avg_pred = averaged_models.predict(test )<save_to_csv>
test.drop(['Name'],axis=1,inplace=True )
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pd.DataFrame({'id': test_id, 'target': avg_pred} ).to_csv('submission.csv', index=False )<set_options>
train.isnull().sum()
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%matplotlib inline <load_from_csv>
train.isnull().sum()
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def read_data(file_path): print('Loading datasets...') train = pd.read_csv(file_path + 'train.csv', sep=',') test = pd.read_csv(file_path + 'test.csv', sep=',') print('Datasets loaded') return train, test<split>
test.isnull().sum()
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PATH = '.. /input/cat-in-the-dat-ii/' train, test = read_data(PATH )<count_unique_values>
test.isnull().sum()
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def zoom_dataset(data): Count_missing_val = data.isnull().sum() Percent_missing =(data.isnull().sum() /data.isnull().count() *100) Percent_no_missing = 100 - Percent_missing Count_unique = data.nunique() Percent_unique_val = Count_unique / len(data)*100 Type = data.dtypes data=[[i, Counter(data[i][data[i].notna() ] )....
train.drop(['Cabin'],axis=1,inplace=True) test.drop(['Cabin'],axis=1,inplace=True) test.drop(['Ticket'],axis=1,inplace=True) train.drop(['Ticket'],axis=1,inplace=True) train.drop(['PassengerId'],axis=1,inplace=True) test.drop(['PassengerId'],axis=1,inplace=True )
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def encoding(train, test, smooth): print('Target encoding...') train.sort_index(inplace=True) target = train['target'] test_id = test['id'] train.drop(['target', 'id'], axis=1, inplace=True) test.drop('id', axis=1, inplace=True) cat_feat_to_encode = train.columns.tolist() smoothing=smooth oof = pd.DataFrame([]) fo...
train.isnull().sum()
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def timer(start_time=None): if not start_time: start_time = datetime.now() return start_time elif start_time: thour, temp_sec = divmod(( datetime.now() - start_time ).total_seconds() , 3600) tmin, tsec = divmod(temp_sec, 60) print('Time taken : %i hours %i minutes and %s seconds.' %(thour, tmin, round(tsec, 2)) )<tra...
train.isnull().sum()
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def run_model(splits, features, target, train): model = lgb.LGBMClassifier(**{ 'learning_rate': 0.05, 'feature_fraction': 0.1, 'min_data_in_leaf' : 12, 'max_depth': 3, 'reg_alpha': 1, 'reg_lambda': 1, 'objective': 'binary', 'metric': 'auc', 'n_jobs': -1, 'n_estimators' : 5000, 'feature_fraction_seed': 42, 'bagging_seed...
test.isnull().sum()
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train, test, test_id, features, target = encoding(train, test, 0.3) model, cms, tprs, aucs, y_real, y_proba, mean_fpr, mean_tpr, df_ml = run_model(5, features, target, train) graph_metrics(cms, tprs, aucs, y_real, y_proba, mean_fpr, mean_tpr )<save_to_csv>
test.isnull().sum()
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pd.DataFrame({'id': test_id, 'target': model.predict_proba(test)[:,1]} ).to_csv('submission.csv', index=False )<import_modules>
train['Age'].fillna(( train['Age'].mean()), inplace=True )
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import numpy as np import pandas as pd from time import time import pprint import joblib from catboost import CatBoostClassifier, Pool from sklearn.model_selection import StratifiedKFold from sklearn.metrics import roc_auc_score, average_precision_score from sklearn.metrics import make_scorer<choose_model_class>
test['Age'].fillna(( test['Age'].mean()), inplace=True )
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SEED = 42 FOLDS = 10 skf = StratifiedKFold(n_splits=FOLDS, shuffle=True, random_state=SEED )<load_from_csv>
test['Fare'].fillna(( test['Fare'].mean()), inplace=True )
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X = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/train.csv") Xt = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/test.csv") y = X.target.values id_train = X.id id_test = Xt.id X.drop(['id', 'target'], axis=1, inplace=True) Xt.drop(['id'], axis=1, inplace=True) binary_vars = [c for c in X.columns if 'bin_' in c] nomin...
train.dropna()
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X['ord_5_1'] = X['ord_5'].apply(lambda x: x[0] if type(x)== str else np.nan) X['ord_5_2'] = X['ord_5'].apply(lambda x: x[1] if type(x)== str else np.nan) Xt['ord_5_1'] = Xt['ord_5'].apply(lambda x: x[0] if type(x)== str else np.nan) Xt['ord_5_2'] = Xt['ord_5'].apply(lambda x: x[1] if type(x)== str else np.nan) ordi...
test.isnull().sum()
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ordinals = { 'ord_1' : { 'Novice' : 0, 'Contributor' : 1, 'Expert' : 2, 'Master' : 3, 'Grandmaster' : 4 }, 'ord_2' : { 'Freezing' : 0, 'Cold' : 1, 'Warm' : 2, 'Hot' : 3, 'Boiling Hot' : 4, 'Lava Hot' : 5 } } def return_order(X, Xt, var_name): mode = X[var_name].mode() [0] el = sorted(set(X[var_name].fillna(mode ).uniqu...
test.isnull().sum()
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label_encoders = [LabelEncoder() for _ in range(X.shape[1])] for col, column in enumerate(X.columns): unique_values = pd.Series(X[column].append(Xt[column] ).unique()) unique_values = unique_values[unique_values.notnull() ] label_encoders[col].fit(unique_values) X.loc[X[column].notnull() , column] = label_encoders[co...
Pclass=pd.get_dummies(train['Pclass'],drop_first=True) Pclass1=pd.get_dummies(test['Pclass'],drop_first=True) Sex=pd.get_dummies(train['Sex'],drop_first=True) Sex1=pd.get_dummies(test['Sex'],drop_first=True) Embarked=pd.get_dummies(train['Embarked'],drop_first=True) Embarked1=pd.get_dummies(test['Embarked'],drop_f...
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X = X.fillna(-1) Xt = Xt.fillna(-1 )<categorify>
train=pd.concat([train,Pclass,Sex,Embarked],axis=1) test=pd.concat([test,Pclass1,Sex1,Embarked1],axis=1 )
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def frequency_encoding(column, df, df_test=None): frequencies = df[column].value_counts().reset_index() df_values = df[[column]].merge(frequencies, how='left', left_on=column, right_on='index' ).iloc[:,-1].values if df_test is not None: df_test_values = df_test[[column]].merge(frequencies, how='left', left_on=column, r...
train.drop(['Sex','Embarked','Pclass'],axis=1,inplace=True) test.drop(['Sex','Embarked','Pclass'],axis=1,inplace=True )
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cat_feat_to_encode = binary_vars + ordinal_vars + nominal_vars + time_vars smoothing = 0.3 enc_x = np.zeros(X[cat_feat_to_encode].shape) for tr_idx, oof_idx in skf.split(X, y): encoder = cat_encs.TargetEncoder(cols=cat_feat_to_encode, smoothing=smoothing) encoder.fit(X[cat_feat_to_encode].iloc[tr_idx], y[tr_idx]) en...
from sklearn.model_selection import train_test_split
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X = X.astype(np.float32) Xt = Xt.astype(np.float32) cat_features = nominal_vars + ordinal_vars X[cat_features] = X[cat_features].astype(np.int64) Xt[cat_features] = Xt[cat_features].astype(np.int64 )<choose_model_class>
from sklearn.model_selection import train_test_split
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best_params = {'bagging_temperature': 0.8, 'depth': 5, 'iterations': 1000, 'l2_leaf_reg': 30, 'learning_rate': 0.05, 'random_strength': 0.8}<split>
y=train['Survived']
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roc_auc = list() average_precision = list() oof = np.zeros(len(X)) cv_test_preds = np.zeros(len(Xt)) best_iteration = list() for train_idx, test_idx in skf.split(X, y): X_train, y_train = X.iloc[train_idx, :], y[train_idx] X_test, y_test = X.iloc[test_idx, :], y[test_idx] train = Pool(data=X_train, label=y_train, featu...
X=train.drop('Survived',axis=1 )
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oof = pd.DataFrame({'id':id_train, 'catboost_oof': oof}) oof.to_csv("oof.csv", index=False) cv_submission = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/sample_submission.csv") cv_submission.target = cv_test_preds cv_submission.to_csv("./catboost_cv_submission.csv", index=False )<compute_test_metric>
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.3, random_state=2 )
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print("Average cv roc auc score %0.3f ± %0.3f" %(np.mean(roc_auc), np.std(roc_auc))) print("Average cv roc average precision %0.3f ± %0.3f" %(np.mean(average_precision), np.std(average_precision))) print("Roc auc score OOF %0.3f" % roc_auc_score(y_true=y, y_score=oof.catboost_oof)) print("Average precision OOF %0.3f"...
logmodel = LogisticRegression() logmodel.fit(X_train,y_train )
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catb = CatBoostClassifier(**best_params, loss_function='Logloss', eval_metric = 'AUC', nan_mode='Min', thread_count=2, verbose = False) train = Pool(data=X, label=y, feature_names=list(X_train.columns), cat_features=cat_features) catb.fit(train, verbose_eval=100, plot=False) Xt_pool = Pool(data=Xt[list(X_train.colum...
predictions = logmodel.predict(X_test )
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import numpy as np import pandas as pd from time import time import pprint import joblib from sklearn.model_selection import StratifiedKFold from sklearn.metrics import roc_auc_score, average_precision_score from sklearn.metrics import make_scorer from sklearn.preprocessing import LabelEncoder from sklearn.preprocessin...
from sklearn.metrics import classification_report
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import tensorflow as tf from keras import backend as K from keras.models import Sequential from keras.layers import Dense from keras.optimizers import Adam, Nadam from keras.layers import Input, Embedding, Reshape, GlobalAveragePooling1D from keras.layers import Flatten, concatenate, Concatenate, Lambda, Dropout, Spati...
classification_report(y_test,predictions )
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X = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/train.csv") Xt = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/test.csv" )<prepare_x_and_y>
from sklearn.metrics import confusion_matrix
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y = X.target.values id_train = X.id id_test = Xt.id X.drop(['id', 'target'], axis=1, inplace=True) Xt.drop(['id'], axis=1, inplace=True )<define_variables>
confusion_matrix(y_test,predictions )
Titanic - Machine Learning from Disaster