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binary_vars = [c for c in X.columns if 'bin_' in c] nominal_vars = [c for c in X.columns if 'nom_' in c] high_cardinality = [c for c in nominal_vars if len(X[c].unique())> 16] low_cardinality = [c for c in nominal_vars if len(X[c].unique())<= 16] ordinal_vars = [c for c in X.columns if 'ord_' in c] time_vars = ['day', ...
( 145+67)/(41+67+15+145 )
Titanic - Machine Learning from Disaster
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X['ord_5_1'] = X['ord_5'].apply(lambda x: x[0] if type(x)== str else np.nan) X['ord_5_2'] = X['ord_5'].apply(lambda x: x[1] if type(x)== str else np.nan) Xt['ord_5_1'] = Xt['ord_5'].apply(lambda x: x[0] if type(x)== str else np.nan) Xt['ord_5_2'] = Xt['ord_5'].apply(lambda x: x[1] if type(x)== str else np.nan) ordi...
gbk = GradientBoostingClassifier() gbk.fit(X_train, y_train) y_pred = gbk.predict(X_test) acc_gbk = round(accuracy_score(y_pred, y_test)* 100, 2) print(acc_gbk )
Titanic - Machine Learning from Disaster
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ordinals = { 'ord_1' : { 'Novice' : 0, 'Contributor' : 1, 'Expert' : 2, 'Master' : 3, 'Grandmaster' : 4 }, 'ord_2' : { 'Freezing' : 0, 'Cold' : 1, 'Warm' : 2, 'Hot' : 3, 'Boiling Hot' : 4, 'Lava Hot' : 5 } } def return_order(X, Xt, var_name): mode = X[var_name].mode() [0] el = sorted(set(X[var_name].fillna(mode ).uniqu...
test.isnull().sum()
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X_cat, Xt_cat = list() , list() categorical_counts = dict() for hc in binary_vars+nominal_vars+ordinal_vars+time_vars: levels = set(X[hc].astype(str ).fillna("NAN" ).unique())|set(Xt[hc].astype(str ).fillna("NAN" ).unique()) levels = np.array(list(levels)) categorical_counts[hc] = len(levels) le = LabelEncoder() le.f...
test.isnull().sum()
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<categorify><EOS>
predictions1 = gbk.predict(test) sample_sub['Survived']= predictions1 sample_sub.to_csv("submit.csv", index=False) sample_sub.head()
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<normalization>
import pandas as pd import numpy as np import matplotlib.pyplot as plt import seaborn as sns
Titanic - Machine Learning from Disaster
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ssc = StandardScaler() selection = freq_encoded + target_encoded + ordinal_vars + time_vars X_ohe = ssc.fit_transform(X[selection].fillna(X[selection].median())) Xt_ohe = ssc.transform(Xt[selection].fillna(X[selection].median()))<normalization>
df_train = pd.read_csv(".. /input/train.csv", sep=",") df_test = pd.read_csv(".. /input/test.csv", sep=",") df_train.head()
Titanic - Machine Learning from Disaster
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def gelu(x): return 0.5 * x *(1 + tf.tanh(tf.sqrt(2 / np.pi)*(x + 0.044715 * tf.pow(x, 3)))) get_custom_objects().update({'gelu': Activation(gelu)}) get_custom_objects().update({'leaky-relu': Activation(LeakyReLU(alpha=0.2)) } )<choose_model_class>
df_train[['Sex','Survived']].groupby(['Sex'],as_index=False ).mean().sort_values(by='Survived',ascending=False ).round(2 )
Titanic - Machine Learning from Disaster
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def tabular_dnn(numeric_variables, categorical_variables, categorical_counts, feature_selection_dropout=0.2, categorical_dropout=0.1, first_dense = 256, second_dense = 256, dense_dropout = 0.2, activation_type=gelu): numerical_inputs = Input(shape=(numeric_variables,)) numerical_normalization = BatchNormalization()(num...
df_train = df_train.drop(["PassengerId", "Name"], axis=1) df_test = df_test.drop(["Name"], axis=1 )
Titanic - Machine Learning from Disaster
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def auroc(y_true, y_pred): try: return tf.py_function(roc_auc_score,(y_true, y_pred), tf.double) except: return tf.py_func(roc_auc_score,(y_true, y_pred), tf.double) get_custom_objects().update({'auroc': auroc}) def mAP(y_true, y_pred): try: return tf.py_function(average_precision_score,(y_true, y_pred), tf.double) ...
df_train['Cabin'].isna().sum()
Titanic - Machine Learning from Disaster
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SEED = 42 FOLDS = 20 MAX_EPOCHS = 100 BATCH_SIZE = 1024 * 4<choose_model_class>
df_train = df_train.drop(["Cabin"], axis=1) df_test = df_test.drop(["Cabin"], axis=1 )
Titanic - Machine Learning from Disaster
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measure_to_monitor = 'val_auroc' modality = 'max' early_stopping = EarlyStopping(monitor=measure_to_monitor, mode=modality, patience=5, verbose=0) model_checkpoint = ModelCheckpoint('best.model', monitor=measure_to_monitor, mode=modality, save_best_only=True, verbose=0) model_reduce_lr = ReduceLROnPlateau(monitor=mea...
df_train['Ticket'] = df_train['Ticket'].astype("category" ).cat.codes df_train['Sex']= df_train['Sex'].astype("category" ).cat.codes df_train['Embarked'] = df_train['Embarked'].astype("category" ).cat.codes df_train['Age'] = round(df_train['Age']) is_alone_train=[] for x in df_train['SibSp']: if(x==0):is_alone_train.a...
Titanic - Machine Learning from Disaster
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model_params = { "numeric_variables" : X_ohe.shape[1], "categorical_variables" : categorical_counts.keys() , "categorical_counts" : categorical_counts, "feature_selection_dropout" : 0.0, "categorical_dropout" : 0.3, "first_dense" : 512, "second_dense" : 512, "dense_dropout" : 0.3, "activation_type" : 'relu' }<choose_mo...
df_train['Age'].fillna(0,inplace=True) df_train['Embarked'].fillna(df_train['Embarked'].mode() [0],inplace=True) df_train['Fare'].fillna(0, inplace=True) df_test['Age'].fillna(0,inplace=True) df_test['Embarked'].fillna(df_test['Embarked'].mode() [0],inplace=True) df_test['Fare'].fillna(0, inplace=True )
Titanic - Machine Learning from Disaster
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skf = StratifiedKFold(n_splits=FOLDS, shuffle=True, random_state=SEED) roc_auc = list() average_precision = list() oof = np.zeros(len(X)) best_iteration = list() cv_test_preds = np.zeros(len(Xt)) for fold,(train_idx, test_idx)in enumerate(skf.split(X, y)) : model = compile_model(tabular_dnn(**model_params), binary_cro...
y = df_train['Survived'] export = pd.DataFrame() export['PassengerId'] = df_test['PassengerId'] df_test = df_test.drop(['PassengerId'], axis=1) df_train = df_train.drop('Survived', axis=1) X = df_train
Titanic - Machine Learning from Disaster
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oof = pd.DataFrame({'id':id_train, 'dnn_oof': oof}) oof.to_csv("oof.csv", index=False) submission = pd.read_csv("/kaggle/input/cat-in-the-dat-ii/sample_submission.csv") submission.target = cv_test_preds submission.to_csv("./dnn_cv_submission.csv", index=False )<compute_test_metric>
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.18, random_state=0) clf = RandomForestClassifier(n_estimators=50, max_depth=6, n_jobs = -1, random_state=0) clf.fit(X_train, y_train) print("Teste: {}%".format(clf.score(X_test, y_test ).round(2))) print("Train: {}%".format(clf.score(X_train, y_t...
Titanic - Machine Learning from Disaster
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print("Average cv roc auc score %0.3f ± %0.3f" %(np.mean(roc_auc), np.std(roc_auc))) print("Average cv roc average precision %0.3f ± %0.3f" %(np.mean(average_precision), np.std(average_precision))) print("Roc auc score OOF %0.3f" % roc_auc_score(y_true=y, y_score=oof.dnn_oof)) print("Average precision OOF %0.3f" % av...
X_test = df_test y_pred_test = clf.predict(X_test) export['Survived'] = y_pred_test export_csv = export.to_csv(r'titanic.csv', index = None, header=True )
Titanic - Machine Learning from Disaster
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<save_to_csv><EOS>
sc = StandardScaler() X_scale = sc.fit_transform(X) cv = KFold(n_splits = 6, shuffle = True) result = cross_validate(clf,X_scale,y,cv=cv, return_train_score=False) print("Cross validate median {}%".format(np.median(result['test_score'] ).round(2)*100)) print("Cross validate average {}%".format(np.average(result['tes...
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<save_to_csv>
seed_value=2509 os.environ['PYTHONHASHSEED']=str(seed_value) np.random.seed(seed_value) rn.seed(seed_value)
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submission.target =(submission.target + pd.read_csv("./dnn_cv_submission.csv" ).target)/ 2 submission.to_csv("./blend_submission.csv", index=False )<load_from_csv>
train = pd.read_csv('.. /input/titanic/train.csv') test = pd.read_csv('.. /input/titanic/test.csv' )
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train = pd.read_csv('.. /input/cat-in-the-dat-ii/train.csv', index_col='id') test = pd.read_csv('.. /input/cat-in-the-dat-ii/test.csv', index_col='id' )<prepare_output>
combo = [train, test] for item in combo: item['Sex'] = item['Sex'].map({'male': 1, 'female': 0} ).astype(int )
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def summary(df): summary = pd.DataFrame(df.dtypes, columns=['dtypes']) summary = summary.reset_index() summary['Name'] = summary['index'] summary = summary[['Name', 'dtypes']] summary['Missing'] = df.isnull().sum().values summary['Uniques'] = df.nunique().values summary['First Value'] = df.loc[0].values summary['Secon...
for item in combo: item['FamilySize'] = item['SibSp'] + item['Parch']+1
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train['missing_count'] = train.isnull().sum(axis=1) test['missing_count'] = test.isnull().sum(axis=1 )<define_variables>
train[['FamilySize', 'Survived']].groupby(['FamilySize'], as_index=False ).mean()
Titanic - Machine Learning from Disaster
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missing_number = -99999 missing_string = 'MISSING_STRING'<define_variables>
for item in combo: item.loc[(item['FamilySize'] ==1), 'Fsize'] = 0 item.loc[(item['FamilySize'] ==2), 'Fsize'] = 1 item.loc[(item['FamilySize'] ==3), 'Fsize'] = 2 item.loc[(item['FamilySize'] ==4), 'Fsize'] = 3 item.loc[(item['FamilySize'] >4), 'Fsize'] = 4 item['Fsize']=item['Fsize'].astype(int )
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numerical_features = [ 'bin_0', 'bin_1', 'bin_2', 'ord_0', 'day', 'month' ] string_features = [ 'bin_3', 'bin_4', 'ord_1', 'ord_2', 'ord_3', 'ord_4', 'ord_5', 'nom_0', 'nom_1', 'nom_2', 'nom_3', 'nom_4', 'nom_5', 'nom_6', 'nom_7', 'nom_8', 'nom_9' ]<categorify>
for item in combo: item['Title'] = item.Name.str.extract('([A-Za-z]+)\.', expand=False) item = item.drop(['Name'], axis=1, inplace=True) print("Titles in test dataset") print(' ') print(test.Title.unique()) print(' ') print("Titles in train dataset") print(' ') print(train.Title.unique() )
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def impute(train, test, columns, value): for column in columns: train[column] = train[column].fillna(value) test[column] = test[column].fillna(value )<compute_test_metric>
for item in combo: item['Title'] = item['Title'].replace(['Ms','Lady', 'Countess','Dona'],'Mrs') item['Title'] = item['Title'].replace(['Mme','Mlle'], 'Miss') item['Title'] = item['Title'].replace(['Major', 'Sir', 'Jonkheer', 'Dr','Col','Don', 'Capt','Rev'],'Mr' )
Titanic - Machine Learning from Disaster
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impute(train, test, numerical_features, missing_number) impute(train, test, string_features, missing_string )<drop_column>
print(train.loc[(train.PassengerId== 797)] )
Titanic - Machine Learning from Disaster
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train['ord_5_1'] = train['ord_5'].str[0] train['ord_5_2'] = train['ord_5'].str[1] train.loc[train['ord_5'] == missing_string, 'ord_5_1'] = missing_string train.loc[train['ord_5'] == missing_string, 'ord_5_2'] = missing_string train = train.drop('ord_5', axis=1) test['ord_5_1'] = test['ord_5'].str[0] test['ord_5_2'] = ...
print(" print(train.Title.value_counts()) print(" print(test.Title.value_counts() )
Titanic - Machine Learning from Disaster
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simple_features = [ 'missing_count' ] oe_features = [ 'bin_0', 'bin_1', 'bin_2', 'bin_3', 'bin_4', 'nom_0', 'nom_1', 'nom_2', 'nom_3', 'nom_4', 'ord_0', 'ord_1', 'ord_2', 'ord_3', 'ord_4', 'ord_5_1', 'ord_5_2', 'day', 'month' ] ohe_features = oe_features target_features = [ 'nom_5', 'nom_6', 'nom_7', 'nom_8', 'nom_9' ]...
train.isnull().sum()
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y_train = train['target'].copy() x_train = train.drop('target', axis=1) del train x_test = test.copy() del test<normalization>
train.isnull().sum()
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scaler = StandardScaler() simple_x_train = scaler.fit_transform(x_train[simple_features]) simple_x_test = scaler.transform(x_test[simple_features] )<categorify>
test.isnull().sum()
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ohe = OneHotEncoder(dtype='uint16', handle_unknown="ignore") ohe_x_train = ohe.fit_transform(x_train[ohe_features]) ohe_x_test = ohe.transform(x_test[ohe_features] )<categorify>
test.isnull().sum()
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oe = OrdinalEncoder() oe_x_train = oe.fit_transform(x_train[oe_features]) oe_x_test = oe.transform(x_test[oe_features] )<import_modules>
for item in combo: item['Cabin'].fillna('N', inplace=True) item['Cabin'] = item['Cabin'].map(lambda c: c[0] )
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from category_encoders import TargetEncoder from sklearn.model_selection import StratifiedKFold<categorify>
for item in combo: item['Cabin'] = item['Cabin'].replace(['A', 'B','C',"D",'E','T'], 0) item['Cabin'] = item['Cabin'].replace(['F','G'], 0) item['Cabin'] = item['Cabin'].replace(['N'], 1 )
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def transform(transformer, x_train, y_train, cv): oof = pd.DataFrame(index=x_train.index, columns=x_train.columns) for train_idx, valid_idx in cv.split(x_train, y_train): x_train_train = x_train.loc[train_idx] y_train_train = y_train.loc[train_idx] x_train_valid = x_train.loc[valid_idx] transformer.fit(x_train_train, ...
train[['Cabin','Survived']].groupby(['Cabin'], as_index=False ).mean()
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target = TargetEncoder(drop_invariant=True, smoothing=0.2) cv = StratifiedKFold(n_splits=5, shuffle=True, random_state=42) target_x_train = transform(target, x_train[target_features], y_train, cv ).astype('float') target.fit(x_train[target_features], y_train) target_x_test = target.transform(x_test[target_features]...
train['Embarked'] = train['Embarked'].fillna('S') combo = [train, test] for item in combo: item['Embarked'] = item['Embarked'].map({'S': 0, 'C': 1, 'Q': 2} ).astype(int )
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x_train = scipy.sparse.hstack([ohe_x_train, simple_x_train, target_x_train] ).tocsr() x_test = scipy.sparse.hstack([ohe_x_test, simple_x_test, target_x_test] ).tocsr()<train_model>
combo = [train, test] for item in combo: item['Age'] = item.groupby(['Pclass','Title'])['Age'].apply(lambda x: x.fillna(x.mean()))
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logit = LogisticRegression(C=0.54321, solver='lbfgs', max_iter=10000) logit.fit(x_train, y_train) y_pred_logit = logit.predict_proba(x_test)[:, 1]<concatenate>
test['Fare'].fillna(test['Fare'].median() , inplace = True )
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x_train = np.concatenate(( oe_x_train, simple_x_train, target_x_train), axis=1) x_test = np.concatenate(( oe_x_test, simple_x_test, target_x_test), axis=1 )<define_variables>
for item in combo: item.loc[ item['Fare'] <= 7.55, 'Fare'] = 0 item.loc[(item['Fare'] > 7.55)&(item['Fare'] <= 10.5), 'Fare'] = 1 item.loc[(item['Fare'] > 10.5)&(item['Fare'] <= 14.454), 'Fare'] = 2 item.loc[(item['Fare'] > 14.454)&(item['Fare'] <= 21.67), 'Fare'] = 3 item.loc[(item['Fare'] > 21.67)&(item['Fare'] <= 77...
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categorial_part = oe_x_train.shape[1]<import_modules>
train[['Pclass','Survived']].groupby(['Pclass'], as_index=False ).mean()
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import tensorflow as tf<compute_test_metric>
train[['Fare','Survived']].groupby(['Fare'], as_index=False ).mean()
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def auc(y_true, y_pred): def fallback_auc(y_true, y_pred): try: return roc_auc_score(y_true, y_pred) except: return 0.5 return tf.py_function(fallback_auc,(y_true, y_pred), tf.double )<choose_model_class>
for item in combo: item = item.drop(['Ticket'], axis=1, inplace=True )
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def make_model(data, categorial_part): inputs = [] categorial_outputs = [] for idx in range(categorial_part): n_unique = np.unique(data[:,idx] ).shape[0] n_embeddings = int(min(np.ceil(n_unique / 2), 50)) inp = tf.keras.layers.Input(shape=(1,)) inputs.append(inp) x = tf.keras.layers.Embedding(n_unique + 1, n_embedding...
train['Age2']=-1 test['Age2']=-1 combo=[train,test] for item in combo: item.loc[(item['Age'] <=4), 'Age2'] =0 item.loc[(item['Age']<=17)&(item['Age'] >4), 'Age2'] =1 item.loc[(item['Age'] >=18)&(item['Age'] <=32), 'Age2'] =2 item.loc[(item['Age'] >32)&(item['Age'] <=42), 'Age2']= 3 item.loc[(item['Age'] >42)&(item['Age...
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def make_inputs(data, categorial_part): inputs = [] for idx in range(categorial_part): inputs.append(data[:, idx]) inputs.append(data[:, categorial_part:]) return inputs<split>
train[['Survived','Age2']].groupby(['Age2'], as_index=False ).mean()
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n_splits = 50 trained_estimators = [] histories = [] scores = [] cv = KFold(n_splits=n_splits, random_state=42) for train_idx, valid_idx in cv.split(x_train, y_train): x_train_train = x_train[train_idx] y_train_train = y_train[train_idx] x_train_valid = x_train[valid_idx] y_train_valid = y_train[valid_idx] K.clear_ses...
pearson_coef1 , p_value1 =scipy.stats.pearsonr(train["Cabin"],train["Pclass"]) print("Cabin - Pclass", pearson_coef1," Correlation certainty =",p_value1 )
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print('Mean score:', np.mean(scores))<predict_on_test>
for item in combo: item = item.drop(['Sex'], axis=1, inplace=True )
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y_pred = np.zeros(x_test.shape[0]) x_test_inputs = make_inputs(x_test, categorial_part) for estimator in trained_estimators: y_pred += estimator.predict(x_test_inputs ).reshape(-1)/ len(trained_estimators )<prepare_output>
for item in combo: item.loc[(( item['Title']=='Miss')&(item['Age'] <=4)) , 'Title'] = 'child' item.loc[(( item['Title']=='Master')&(item['Age'] <=4)) , 'Title'] = 'child' item.loc[(( item['Title']=='Miss')&(item['Age'] <=17)) , 'Title'] = 'kid' item.loc[(( item['Title']=='Master')&(item['Age'] <=17)) , 'Title'] = 'kid'...
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y_pred_keras = y_pred<compute_test_metric>
train[['Title', 'Survived']].groupby(['Title'], as_index=False ).mean()
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y_pred = np.add(y_pred_logit, y_pred_keras)/ 2<save_to_csv>
train['Title'] = train['Title'].map({ 'Mr': 0 ,'Miss':1, 'MrsNoCh':2 ,'MrsYesCh':3,'kid':4,'child':5} ).astype(int) test['Title'] = test['Title'].map({'Mr': 0 ,'Miss':1, 'MrsNoCh':2 ,'MrsYesCh':3,'kid':4, 'child':5} ).astype(int )
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submission = pd.read_csv('.. /input/cat-in-the-dat-ii/sample_submission.csv', index_col='id') submission['target'] = y_pred submission.to_csv('logit_keras.csv' )<install_modules>
for item in combo: item = item.drop(['Age'], axis=1, inplace=True )
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!pip install --no-warn-conflicts -q deepctr<import_modules>
X_train = train.drop(['Survived','PassengerId','FamilySize','FareBin'], axis=1) col=(X_train.columns) Y_train = train["Survived"] X_test=test.drop(["PassengerId","FamilySize"], axis=1 )
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warnings.simplefilter('ignore' )<load_from_csv>
scaler = StandardScaler() scaler.fit_transform(X_train) scaler.transform(X_test )
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train = pd.read_csv('.. /input/cat-in-the-dat-ii/train.csv') test = pd.read_csv('.. /input/cat-in-the-dat-ii/test.csv' )<feature_engineering>
test1 = SelectKBest(score_func= f_classif, k=4) fit = test1.fit(X_train, Y_train) set_printoptions(precision=3) print(col) print(' ',fit.scores_ )
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test['target'] = -1 test.head()<concatenate>
model = ExtraTreesClassifier(n_estimators=10) model.fit(X_train, Y_train) print(col) print('Feature importance') print(model.feature_importances_ )
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data = pd.concat([train, test] ).reset_index(drop=True )<feature_engineering>
rfe = RFE(estimator=DecisionTreeClassifier() , n_features_to_select=4) fit = rfe.fit(X_train, Y_train) print('Features : ',col) print("Num Features: ",fit.n_features_) print("Selected Features: ",fit.support_) print("Feature Ranking: ",fit.ranking_ )
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data['null'] = data.isna().sum(axis=1 )<feature_engineering>
X_train = pd.get_dummies(X_train, columns = ["Title"],prefix="N") X_train = pd.get_dummies(X_train, columns = ["Fare"],prefix="F",drop_first=True) X_test = pd.get_dummies(X_test, columns = ["Title"],prefix="N") X_test = pd.get_dummies(X_test, columns = ["Fare"],prefix="F",drop_first=True) Y_train = train["Survived"...
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sparse_features = [feat for feat in train.columns if feat not in ['id','target']] data[sparse_features] = data[sparse_features].fillna('-1', )<categorify>
X_train.drop(["Embarked","Cabin",'Age2'], axis=1, inplace=True) X_test.drop(["Embarked","Cabin",'Age2'], axis=1,inplace=True) print("Training set X: ", X_train.shape, "Training set Y:",Y_train.shape, "Testing set X", X_test.shape )
Titanic - Machine Learning from Disaster
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for feat in sparse_features: lbe = LabelEncoder() data[feat] = lbe.fit_transform(data[feat].fillna('-1' ).astype(str ).values )<prepare_x_and_y>
from sklearn.ensemble import RandomForestClassifier, GradientBoostingClassifier,AdaBoostClassifier from sklearn.tree import DecisionTreeClassifier from sklearn.neural_network import MLPClassifier from sklearn.neighbors import KNeighborsClassifier from sklearn.svm import SVC import lightgbm as lgb from lightgbm import L...
Titanic - Machine Learning from Disaster
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train = data[data.target != -1].reset_index(drop=True) test = data[data.target == -1].reset_index(drop=True )<count_unique_values>
kfld = StratifiedKFold(n_splits=5, shuffle=True, random_state=2509) GB_param = {"n_estimators":[100,150,250,500], "learning_rate": [0.001,0.01,0.05,0.1,0.2], "min_samples_split":[3,10,31],"max_depth":[3,5,7], "max_features":[4,7,8,9,10,11,13], "subsample":[0.8,1], "criterion": ["mae"]} AdaB_param ={'n_estimators': [10...
Titanic - Machine Learning from Disaster
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fixlen_feature_columns = [SparseFeat(feat, data[feat].nunique())for feat in sparse_features] dnn_feature_columns = fixlen_feature_columns linear_feature_columns = fixlen_feature_columns feature_names = get_feature_names(linear_feature_columns + dnn_feature_columns )<compute_test_metric>
randomforest = RandomForestClassifier(criterion = 'gini',bootstrap= True, max_depth= 5, max_features=10, min_samples_split= 31, n_estimators=20,random_state=seed_value) svc_model = SVC(C=0.5, cache_size=200, decision_function_shape='ovr', degree=3, gamma='auto', kernel='rbf', max_iter=-1, probability=True, random_stat...
Titanic - Machine Learning from Disaster
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def auc(y_true, y_pred): def fallback_auc(y_true, y_pred): try: return roc_auc_score(y_true, y_pred) except: return 0.5 return tf.py_function(fallback_auc,(y_true, y_pred), tf.double )<compute_train_metric>
def evaluate_model(model): seed=7 kfld = StratifiedKFold(n_splits=5,shuffle=True,random_state=seed) scores = cross_val_score(model, X_train , Y_train, scoring='accuracy', cv=kfld, n_jobs=-1, error_score='raise') return scores clfs={'LightGBM':[modellt,78.707],'XGBoost':[xgb_model,99978.229],'GradientBoost':[gb,78.468...
Titanic - Machine Learning from Disaster
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def focal_loss(gamma=2., alpha=.25): def focal_loss_fixed(y_true, y_pred): pt_1 = tf.where(tf.equal(y_true, 1), y_pred, tf.ones_like(y_pred)) pt_0 = tf.where(tf.equal(y_true, 0), y_pred, tf.zeros_like(y_pred)) return -K.mean(alpha * K.pow(1.- pt_1, gamma)* K.log(K.epsilon() +pt_1)) -K.mean(( 1-alpha)* K.pow(pt_0, gamma...
x_train, x_test, y_train, y_test = train_test_split(X_train, Y_train, test_size=0.2,shuffle=True ,random_state=123 )
Titanic - Machine Learning from Disaster
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def custom_gelu(x): return 0.5 * x *(1 + tf.tanh(tf.sqrt(2 / np.pi)*(x + 0.044715 * tf.pow(x, 3)))) get_custom_objects().update({'custom_gelu': Activation(custom_gelu)} )<choose_model_class>
def evaluation(name,clf): model=clf.fit(x_train,y_train) y_prob = model.predict_proba(x_test)[:, 1] prAuc = average_precision_score(y_test, y_prob) y_pred = model.predict(x_test) acc = balanced_accuracy_score(y_test, y_pred) f1= f1_score(y_test, y_pred) return prAuc,acc,f1 scores={} for name, model in models_set.i...
Titanic - Machine Learning from Disaster
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class WarmUpLearningRateScheduler(tf.keras.callbacks.Callback): def __init__(self, warmup_batches, init_lr, verbose=0): super(WarmUpLearningRateScheduler, self ).__init__() self.warmup_batches = warmup_batches self.init_lr = init_lr self.verbose = verbose self.batch_count = 0 self.learning_rates = [] def on_batch_e...
def create_clf(E,t): if t=='Voting': vclf=VotingClassifier(E, voting='hard') else: vclf=StackingClassifier(E, final_estimator= LogisticRegression()) return vclf E1=[KNN1,NN1,SVM1,RF1,GR1] E2=[KNN1,SVM1,RF1,GR1] E3=[KNN1,SVM1,GR1] E4=[KNN1,SVM1] ensembles_set={'KNN-NN-SVM-RF-GR':[E1,'79.186','78.947'],'KNN-SVM-RF-GR':...
Titanic - Machine Learning from Disaster
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<define_variables><EOS>
E=[KNN1,SVM1] vot=VotingClassifier(E, voting='hard') ensemble = vot.fit(X_train, Y_train) y_vote = ensemble.predict(X_test) submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": y_vote }) submission.to_csv('Titanic.csv', index=False) print("Your submission was successfully saved!")
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<prepare_x_and_y>
%matplotlib inline
Titanic - Machine Learning from Disaster
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oof_pred_deepfm = np.zeros(( len(train),)) y_pred_deepfm = np.zeros(( len(test),)) skf = StratifiedKFold(n_splits=N_Splits, shuffle=True, random_state=SEED) for fold,(tr_ind, val_ind)in enumerate(skf.split(train, train[target])) : X_train, X_val = train[sparse_features].iloc[tr_ind], train[sparse_features].iloc[val_in...
df_test = pd.read_csv('.. /input/titanic/test.csv') df_train = pd.read_csv('.. /input/titanic/train.csv' )
Titanic - Machine Learning from Disaster
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print(f'OOF AUC : {round(roc_auc_score(train.target.values, oof_pred_deepfm), 5)}' )<save_to_csv>
df_train.drop(['Cabin','Fare','Parch','Ticket','Name'],axis=1,inplace = True )
Titanic - Machine Learning from Disaster
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test_idx = test.id.values submission = pd.DataFrame.from_dict({ 'id': test_idx, 'target': y_pred_deepfm }) submission.to_csv('submission.csv', index=False) print('Submission file saved!' )<save_model>
df_test.drop(['Cabin','Fare','Parch','Ticket','Name'],axis=1,inplace = True )
Titanic - Machine Learning from Disaster
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np.save('oof_pred_deepfm.npy',oof_pred_deepfm) np.save('y_pred_deepfm.npy', y_pred_deepfm )<define_variables>
df_test.fillna(35,inplace=True )
Titanic - Machine Learning from Disaster
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path = Path('.. /input/cassava-leaf-disease-classification' )<load_from_csv>
df_train.fillna(35,inplace=True )
Titanic - Machine Learning from Disaster
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train_df = pd.read_csv(path/'train.csv') train_df = train_df[~train_df['image_id'].isin(['1562043567.jpg', '3551135685.jpg', '2252529694.jpg'])] train_df.head()<set_options>
embark = pd.get_dummies(df_train['Embarked'],drop_first=True) sex = pd.get_dummies(df_train['Sex'],drop_first=True) train = pd.concat([df_train.drop(['Embarked','Sex'],axis=1),sex,embark],axis=1 )
Titanic - Machine Learning from Disaster
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item_tfms = RandomResizedCrop(460, min_scale=0.75, ratio=(1.,1.)) batch_tfms = [*aug_transforms(size=384, max_warp=0), Normalize.from_stats(*imagenet_stats)] bs=16<prepare_x_and_y>
embark = pd.get_dummies(df_test['Embarked'],drop_first=True) sex = pd.get_dummies(df_test['Sex'],drop_first=True) test = pd.concat([df_test.drop(['Embarked','Sex'],axis=1),sex,embark],axis=1 )
Titanic - Machine Learning from Disaster
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def get_x(r): return path/'train_images'/r['image_id'] def get_y(r): return r['label']<load_pretrained>
train = train.drop(['C','PassengerId'],axis=1) test = test.drop(['PassengerId'],axis=1 )
Titanic - Machine Learning from Disaster
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pets = DataBlock(blocks=(ImageBlock, CategoryBlock), get_x=get_x, get_y=get_y, splitter=RandomSplitter(0.2, seed=42), item_tfms=item_tfms, batch_tfms=batch_tfms) dataloader = pets.dataloaders(train_df, bs=bs )<define_variables>
model = Sequential() model.add(Dense(19,activation='relu')) model.add(Dense(19,activation='relu')) model.add(Dense(19,activation='relu')) model.add(Dense(19,activation='relu')) model.add(Dense(1)) model.compile(optimizer='rmsprop',loss='mse' )
Titanic - Machine Learning from Disaster
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dataloader.show_batch()<choose_model_class>
model.fit(train.drop(['Survived'],axis=1),train['Survived'],epochs=200 )
Titanic - Machine Learning from Disaster
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learn = cnn_learner(dataloader, resnet50, loss_func = LabelSmoothingCrossEntropy() , cbs=[MixUp() ], metrics=[error_rate,accuracy]) learn.fine_tune(8,freeze_epochs = 2,base_lr=1e-2 )<categorify>
pred = model.predict_classes(test )
Titanic - Machine Learning from Disaster
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learn = learn.to_native_fp32()<load_from_csv>
idpred = [] for i in range(len(pred)) : idpred.append(pred[i][0] )
Titanic - Machine Learning from Disaster
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sample_df = pd.read_csv(path/'sample_submission.csv') sample_df.head()<train_model>
submit = pd.concat([df_test['PassengerId'],p],axis=1 )
Titanic - Machine Learning from Disaster
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test_data_path = sample_df['image_id'].apply(lambda x: path/'test_images'/x) tst_dl = learn.dls.test_dl(test_data_path) predictions = learn.tta(dl = tst_dl, n=10) <prepare_output>
submit.rename(columns={0:'Survived'},inplace = True )
Titanic - Machine Learning from Disaster
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<save_to_csv><EOS>
submit.to_csv('Submission.csv',index=False )
Titanic - Machine Learning from Disaster
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<SOS> metric: MCAUC Kaggle data source: ranzcr-clip-catheter-and-line-position-challenge<define_variables>
%env SM_FRAMEWORK=tf.keras !pip install.. /input/segmentation-models-keras/Keras_Applications-1.0.8-py3-none-any.whl --quiet !pip install.. /input/segmentation-models-keras/image_classifiers-1.0.0-py3-none-any.whl --quiet !pip install.. /input/segmentation-models-keras/efficientnet-1.0.0-py3-none-any.whl --quiet !pip i...
RANZCR CLiP - Catheter and Line Position Challenge
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path = '.. /input/' comp = 'jigsaw-toxic-comment-classification-challenge/' EMBEDDING_FILE=f'{path}fasttext-crawl-300d-2m/crawl-300d-2M.vec' TRAIN_DATA_FILE=f'{path}{comp}train.csv' TEST_DATA_FILE=f'{path}{comp}test.csv'<define_variables>
DEBUG = False
RANZCR CLiP - Catheter and Line Position Challenge
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embed_size = 300 max_features = 20000 maxlen = 100<load_from_csv>
print(tf.__version__ )
RANZCR CLiP - Catheter and Line Position Challenge
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train = pd.read_csv(TRAIN_DATA_FILE) test = pd.read_csv(TEST_DATA_FILE) list_sentences_train = train["comment_text"].fillna("_na_" ).values list_classes = ["toxic", "severe_toxic", "obscene", "threat", "insult", "identity_hate"] y = train[list_classes].values list_sentences_test = test["comment_text"].fillna("_na_" )...
data_dir = '.. /input/ranzcr-clip-catheter-line-classification' model_dir = '.. /input/ranzcr-1st-place-solution-by-tf-models' seg_image_size = 1024 cls_image_size = 512 batch_size = 16
RANZCR CLiP - Catheter and Line Position Challenge
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tokenizer = Tokenizer(num_words=max_features) tokenizer.fit_on_texts(list(list_sentences_train)) list_tokenized_train = tokenizer.texts_to_sequences(list_sentences_train) list_tokenized_test = tokenizer.texts_to_sequences(list_sentences_test) X_t = pad_sequences(list_tokenized_train, maxlen=maxlen) X_te = pad_seque...
df_sub = pd.read_csv(os.path.join(data_dir, 'sample_submission.csv'))
RANZCR CLiP - Catheter and Line Position Challenge
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def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32') embeddings_index = dict(get_coefs(*o.strip().split())for o in open(EMBEDDING_FILE))<feature_engineering>
seg_model_names = [ 'seg_model_V10_0.hdf5' ] cls_model_names = [ 'cls_model_V14_0.hdf5', 'cls_model_V15_1.hdf5', 'cls_model_V15_2.hdf5', 'cls_model_V16_3.hdf5', 'cls_model_V16_4.hdf5' ]
RANZCR CLiP - Catheter and Line Position Challenge
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word_index = tokenizer.word_index nb_words = min(max_features, len(word_index)) embedding_matrix = np.zeros(( nb_words, embed_size)) for word, i in word_index.items() : if i >= max_features: continue embedding_vector = embeddings_index.get(word) if embedding_vector is not None: embedding_matrix[i] = embedding_vector<c...
tfrec_path = data_dir + '/test_tfrecords/*.tfrec' tfrec_file_names = sorted(tf.io.gfile.glob(tfrec_path)) tfrec_file_names = \ [ tfrec_file_names[0] ] if DEBUG else tfrec_file_names tfrec_file_names
RANZCR CLiP - Catheter and Line Position Challenge
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inp = Input(shape=(maxlen,)) x = Embedding(max_features, embed_size, weights=[embedding_matrix] )(inp) x = Bidirectional(LSTM(300, return_sequences=True, dropout=0.1, recurrent_dropout=0.1))(x) x = GlobalMaxPool1D()(x) x = Dense(50, activation="relu" )(x) x = Dropout(0.1 )(x) x = Dense(6, activation="sigmoid" )(x)...
AUTOTUNE = tf.data.experimental.AUTOTUNE def decode_image(image_data): image = tf.image.decode_jpeg(image_data, channels=3) return image def read_tfrecord(example): TFREC_FORMAT = { 'image': tf.io.FixedLenFeature([], tf.string), 'StudyInstanceUID': tf.io.FixedLenFeature([], tf.string), } example = tf.io.parse_single_e...
RANZCR CLiP - Catheter and Line Position Challenge
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model.fit(X_t, y, batch_size=32, epochs=2, validation_split=0.1);<save_to_csv>
raw_test_ds = load_dataset(tfrec_file_names) raw_test_ds
RANZCR CLiP - Catheter and Line Position Challenge
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y_test = model.predict([X_te], batch_size=1024, verbose=1) sample_submission = pd.read_csv(f'{path}{comp}sample_submission.csv') sample_submission[list_classes] = y_test sample_submission.to_csv('submission.csv', index=False )<import_modules>
study_inst_id_list = [ study_inst_id.numpy().decode('utf-8')for image, study_inst_id in raw_test_ds ] print(study_inst_id_list[ :10 ]) print(study_inst_id_list[ -10: ] )
RANZCR CLiP - Catheter and Line Position Challenge
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print(tf.__version__) tf.test.is_gpu_available( cuda_only=False, min_cuda_compute_capability=None )<load_from_csv>
def drop_study_inst_id(image, study_inst_id): return image def preprocess_image(image): image_seg = tf.image.resize(image,(seg_image_size, seg_image_size)) image_seg = image_seg / 255.0 image_cls = tf.image.resize(image,(cls_image_size, cls_image_size)) return(( image_seg, image_cls),) def make_test_dataset() : ds = l...
RANZCR CLiP - Catheter and Line Position Challenge
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BATCH_SIZE = 512 LSTM_UNITS = 128 DENSE_HIDDEN_UNITS = 4 * LSTM_UNITS EPOCHS = 4 MAX_LEN = 220 TEXT_COLUMN = 'comment_text' list_classes = ["toxic", "severe_toxic", "obscene", "threat", "insult", "identity_hate"] CHARS_TO_REMOVE = '!" “”’'∞θ÷α•à−β∅³π‘₹´°£€\×™√²—' submission = pd.read_csv(".. /input/jigsaw-toxic-comment...
test_ds = make_test_dataset() test_ds
RANZCR CLiP - Catheter and Line Position Challenge
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categories = ["toxic", "severe_toxic", "obscene", "threat", "insult", "identity_hate"] data_folder = ".. /input/jigsaw-toxic-comment-classification-challenge/" pretrained_folder = ".. /input/" train_filepath = data_folder + "train.csv" test_filepath = data_folder + "test.csv" submission_path = data_folder + "submission...
def load_model(weight_file_name): weight_file_path = os.path.join(model_dir, weight_file_name) model = tf.keras.models.load_model(weight_file_path) return model def make_seg_masks(x): fold_seg_masks = tf.stack(x, axis=0) average_seg_masks = \ tf.math.reduce_mean(fold_seg_masks, axis=0) return average_seg_masks def ...
RANZCR CLiP - Catheter and Line Position Challenge
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hyphens_filepath = ".. /input/cleaning-dictionaries/hyphens_dictionary.bin" misspellings_filepath = ".. /input/cleaning-dictionaries/misspellings_all_dictionary.bin" merged_filepath = ".. /input/cleaning-dictionaries/merged_all_dictionary.bin" hyphens_dict = misspellings_dict = merged_dict = {} with open(hyphens_filepa...
strategy = tf.distribute.get_strategy() print("REPLICAS: ", strategy.num_replicas_in_sync )
RANZCR CLiP - Catheter and Line Position Challenge
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training_samples_count = 149571 validation_samples_count = 10000 length_threshold = 20000 word_count_threshold = 900 words_limit = 310000 valid_characters = " " + "@$" + "'!?-" + "abcdefghijklmnopqrstuvwxyz" + "abcdefghijklmnopqrstuvwxyz".upper() valid_characters_ext = valid_characters + "abcdefghijklmnopqrstuvwxyz".up...
df_sub['StudyInstanceUID'] = study_inst_id_list
RANZCR CLiP - Catheter and Line Position Challenge
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cont_patterns = [ (r'(W|w)on't', r'will not'), (r'(C|c)an't', r'can not'), (r'(I|i)'m', r'i am'), (r'(A|a)in't', r'is not'), (r'(\w+)'ll', r'\g<1> will'), (r'(\w+)n't', r'\g<1> not'), (r'(\w+)'ve', r'\g<1> have'), (r'(\w+)'s', r'\g<1> is'), (r'(\w+)'re', r'\g<1> are'), (r'(\w+)'d', r'\g<1> would'), ] patterns...
target_cols = [ 'ETT - Abnormal', 'ETT - Borderline', 'ETT - Normal', 'NGT - Abnormal', 'NGT - Borderline', 'NGT - Incompletely Imaged', 'NGT - Normal', 'CVC - Abnormal', 'CVC - Borderline', 'CVC - Normal', 'Swan Ganz Catheter Present' ]
RANZCR CLiP - Catheter and Line Position Challenge
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nlp = spacy.load('en') def normalize_comment(comment): comment = unidecode(comment) comment = comment[:length_threshold] normalized_words = [] for w in astericks_words: if w[0] in comment: comment = comment.replace(w[0], w[1]) if w[0].upper() in comment: comment = comment.replace(w[0].upper() , w[1].upper()) for wo...
df_subs = [df_sub.copy() for _ in range(PROBS.shape[0])] for i, this_sub in enumerate(df_subs): this_sub[target_cols] = PROBS[i] this_sub[target_cols] = \ this_sub[target_cols].rank(pct=True )
RANZCR CLiP - Catheter and Line Position Challenge
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def read_data_files(train_filepath, test_filepath): train = pd.read_csv(train_filepath) labels = train[categories].values test = pd.read_csv(test_filepath) test_comments = test["comment_text"].fillna("_na_" ).values np_normalize = np.vectorize(normalize_comment) comments = train["comment_text"].fillna("_na_" ).value...
rank_values = \ [this_sub[target_cols].values for this_sub in df_subs] df_sub[target_cols] = \ np.stack(rank_values, 0 ).mean(0 )
RANZCR CLiP - Catheter and Line Position Challenge
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<string_transform><EOS>
df_sub.to_csv('submission.csv', index=False) !head submission.csv
RANZCR CLiP - Catheter and Line Position Challenge
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<SOS> metric: MCAUC Kaggle data source: ranzcr-clip-catheter-and-line-position-challenge<load_pretrained>
batch_size = 1 image_size = 512 tta = True submit = True enet_type = ['resnet200d'] * 5 model_path = ['.. /input/resnet200d-baseline-benchmark-public/resnet200d_fold0_cv953.pth', '.. /input/resnet200d-baseline-benchmark-public/resnet200d_fold1_cv955.pth', '.. /input/resnet200d-baseline-benchmark-public/resnet200d_fold2...
RANZCR CLiP - Catheter and Line Position Challenge