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def sh(cmd, ignore_error=False, cwd=None, shell=False, **kwargs): """ Execute a command with subprocess.Popen and block until output Args: cmd (tuple or str): same as subprocess.Popen args Keyword Arguments: ignore_error (bool): if False, raise an Exception if p.returncode is ...
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def OnApprove(self, event): """File approve event handler""" if not self.main_window.safe_mode: return msg = _(u"You are going to approve and trust a file that\n" u"you have not created yourself.\n" u"After proceeding, the file is executed.\n \n" ...
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def _check_by_re(self, url_data, content): """ Finds urls by re. :param url_data: object for url storing :param content: file content """ for link_re in self._link_res: for u in link_re.finditer(content): self._save_url(url_data, content, u.group(1), ...
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def paste_template(self, template_name, template=None, deploy_dir=None): " Paste template. " LOGGER.debug("Paste template: %s" % template_name) deploy_dir = deploy_dir or self.deploy_dir template = template or self._get_template_path(template_name) self.read([op.join(template, s...
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def run_nohup(self, cmd, working_dir=None): """ :param cmd: :param working_dir: 当前的工作目录,如果没有 home 目录,会因为一些原因导致运行失败,比如没有无法创建 nohup.out :return: """ cmd = 'nohup %s &\n\n' % cmd if working_dir is not None: cmd = 'cd {}; {}'.format(working_dir, cmd) ...
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def get_bootstrap(cls, name, ctx): '''Returns an instance of a bootstrap with the given name. This is the only way you should access a bootstrap class, as it sets the bootstrap directory correctly. ''' if name is None: return None if not hasattr(cls, 'bootstr...
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def load_class(self, classname): """ Loads a class looking for it in each module registered. :param classname: Class name you want to load. :type classname: str :return: Class object :rtype: type """ module_list = self._get_module_list() for mod...
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def rm_docs(self): """Remove converted docs.""" for filename in self.created: if os.path.exists(filename): os.unlink(filename)
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def get(self, content_id, feature_names=None): '''Retrieve a feature collection. If a feature collection with the given id does not exist, then ``None`` is returned. :param str content_id: Content identifier. :param [str] feature_names: A list of feature names to retr...
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def build(id=None, name=None, revision=None, temporary_build=False, timestamp_alignment=False, no_build_dependencies=False, keep_pod_on_failure=False, force_rebuild=False, rebuild_mode=common.REBUILD_MODES_DEFAULT): """ Trigger a BuildConfiguration by name or ID...
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def node_predictions(self): """ Determines which rows fall into which node """ pred = np.zeros(self.data_size) for node in self: if node.is_terminal: pred[node.indices] = node.node_id return pred
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def set_defaults(self, config_file): """Set defaults. """ self.defaults = Defaults(config_file) self.python = Python() self.setuptools = Setuptools() self.docutils = Docutils() self.styles = self.defaults.styles self.browser = self.defaults.browser ...
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def print_info(self, capture): """Prints information about the unprocessed image. Reads one frame from the source to determine image colors, dimensions and data types. Args: capture: the source to read from. """ self.frame_offset += 1 ret, frame = ca...
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def get_url(pif, dataset, version=1, site="https://citrination.com"): """ Construct the URL of a PIF on a site :param pif: to construct URL for :param dataset: the pif will belong to :param version: of the PIF (default: 1) :param site: for the dataset (default: https://citrination.com) :retu...
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def _set_metric(self, metric_name, metric_type, value, tags=None): """ Set a metric """ if metric_type == self.GAUGE: self.gauge(metric_name, value, tags=tags) else: self.log.error('Metric type "{}" unknown'.format(metric_type))
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def ll(self, folder="", begin_from_file="", num=-1, all_grant_data=False): """ Get the list of files and permissions from S3. This is similar to LL (ls -lah) in Linux: List of files with permissions. Parameters ---------- folder : string Path to file on S3 ...
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def _get_representative(self, obj): """Finds and returns the root of the set containing `obj`.""" if obj not in self._parents: self._parents[obj] = obj self._weights[obj] = 1 self._prev_next[obj] = [obj, obj] self._min_values[obj] = obj return...
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def _setns(self, value): """ Set the default repository namespace to be used. This method exists for compatibility. Use the :attr:`default_namespace` property instead. """ if self.conn is not None: self.conn.default_namespace = value else: ...
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def is_deposit_confirmed( channel_state: NettingChannelState, block_number: BlockNumber, ) -> bool: """True if the block which mined the deposit transaction has been confirmed. """ if not channel_state.deposit_transaction_queue: return False return is_transaction_confirmed( ...
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def isRectangular(self): """Check if quad is rectangular. """ # if any two of the 4 corners are equal return false upper = (self.ur - self.ul).unit if not bool(upper): return False right = (self.lr - self.ur).unit if not bool(right): return False ...
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def get_captcha(self, id=None): """ http://api.yandex.ru/cleanweb/doc/dg/concepts/get-captcha.xml""" payload = {'id': id} r = self.request('get', 'http://cleanweb-api.yandex.ru/1.0/get-captcha', params=payload) return dict((item.tag, item.text) for item in ET.fromstring(r.content))
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def print_status(self, repo_name, repo_path): """Print repository status.""" color = Color() self.logger.info(color.colored( "=> [%s] %s" % (repo_name, repo_path), "green")) try: repo = Repository(repo_path) repo.status() except RepositoryError...
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def get_json_payload_magic_envelope(self, payload): """Encrypted JSON payload""" private_key = self._get_user_key() return EncryptedPayload.decrypt(payload=payload, private_key=private_key)
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def get_node_label(self, model): """ Defines how labels are constructed from models. Default - uses verbose name, lines breaks where sensible """ if model.is_proxy: label = "(P) %s" % (model.name.title()) else: label = "%s" % (model.name.title()) ...
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def _get_known_noncoding_het_snp(data_dict): '''If ref is coding, return None. If the data dict has a known snp, and samtools made a call, then return the string ref_name_change and the % of reads supporting the variant type. If noncoding, but no samtools call, then return None'...
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def loadb(chars, no_bytes=False, object_hook=None, object_pairs_hook=None, intern_object_keys=False): """Decodes and returns UBJSON from the given bytes or bytesarray object. See load() for available arguments.""" with BytesIO(chars) as fp: return load(fp, no_bytes=no_bytes, object_hook=object_ho...
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def main(): """ Update the ossuary Postgres db with images observed for OSSOS. iq: Go through and check all ossuary's images for new existence of IQs/zeropoints. comment: Go through all ossuary and Then updates ossuary with new images that are at any stage of processing. Constructs full image en...
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def residual_plots(df, rep_stats=None, els=['Mg', 'Sr', 'Al', 'Mn', 'Fe', 'Cu', 'Zn', 'B']): """ Function for plotting Test User and LAtools data comparison. Parameters ---------- df : pandas.DataFrame A dataframe containing reference ('X/Ca_r'), test user ('X/Ca_t') and LAtools ('...
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def has_near_match_generic_ngrams(subsequence, sequence, search_params): """search for near-matches of subsequence in sequence This searches for near-matches, where the nearly-matching parts of the sequence must meet the following limitations (relative to the subsequence): * the maximum allowed number...
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def _repeat(self, index, stage, stop): """ Repeat a stage. :param index: Stage index. :param stage: Stage object to repeat. :param iterations: Number of iterations (default infinite). :param stages: Stages back to repeat (default 1). """ times = None if '...
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def is_builtin_type(tp): """Checks if the given type is a builtin one. """ return hasattr(__builtins__, tp.__name__) and tp is getattr(__builtins__, tp.__name__)
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def inspect(self, w): """Get the latest value of the wire given, if possible.""" if isinstance(w, WireVector): w = w.name try: vals = self.tracer.trace[w] except KeyError: pass else: if not vals: raise PyrtlError('No...
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def get_tops(self): ''' Gather the top files ''' tops = collections.defaultdict(list) include = collections.defaultdict(list) done = collections.defaultdict(list) errors = [] # Gather initial top files try: saltenvs = set() ...
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def format_invoke_command(self, string): """ Formats correctly the string output from the invoke() method, replacing line breaks and tabs when necessary. """ string = string.replace('\\n', '\n') formated_response = '' for line in string.splitlines(): ...
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def update_saved_search(self, id, **kwargs): # noqa: E501 """Update a specific saved search # noqa: E501 # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.update_saved_searc...
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def ParseLines(self, input_lines): """Parses list of lines. Args: input_lines: A list of strings of input to parse (no newlines on the strings). Raises: PDDMError if there are any issues. """ current_macro = None for line in input_lines: if line.startswith(...
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def init_session(db_url=None, echo=False, engine=None, settings=None): """ A SQLAlchemy Session requires that an engine be initialized if one isn't provided. """ if engine is None: engine = init_engine(db_url=db_url, echo=echo, settings=settings) return sessionmaker(bind=engine)
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def _srvc_make_overview_tables(self, tables_to_make, traj=None): """Creates the overview tables in overview group""" for table_name in tables_to_make: # Prepare the tables desciptions, depending on which overview table we create # we need different columns paramdescri...
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def network_expansion_diff (networkA, networkB, filename=None, boundaries=[]): """Plot relative network expansion derivation of AC- and DC-lines. Parameters ---------- networkA: PyPSA network container Holds topology of grid including results from powerflow analysis networkB: PyPSA netw...
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def p_iteration_statement_4(self, p): """ iteration_statement \ : FOR LPAREN left_hand_side_expr IN expr RPAREN statement """ p[0] = ast.ForIn(item=p[3], iterable=p[5], statement=p[7])
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def set_input_by_xpath(self, xpath, value): """ Set the value of form element by xpath :param xpath: xpath path :param value: value which should be set to element """ elem = self.select(xpath).node() if self._lxml_form is None: # Explicitly set the ...
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def into_view(self): """Converts the index into a view""" try: return View._from_ptr(rustcall( _lib.lsm_index_into_view, self._get_ptr())) finally: self._ptr = None
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def write_hdf5(self, filename, dataset_name=None, info=None, group_name=None): r"""Writes a unyt_array to hdf5 file. Parameters ---------- filename: string The filename to create and write a dataset to dataset_name: string The name of the dataset to crea...
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def polygonVertices(x, y, radius, sides, rotationDegrees=0, stretchHorizontal=1.0, stretchVertical=1.0): """ Returns a generator that produces the (x, y) points of the vertices of a regular polygon. `x` and `y` mark the center of the polygon, `radius` indicates the size, `sides` specifies what kind of p...
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def paintEvent(self, event): """Qt Override. Include a validation icon to the left of the line edit. """ super(IconLineEdit, self).paintEvent(event) painter = QPainter(self) rect = self.geometry() space = int((rect.height())/6) h = rect.height() - space ...
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def ramp_array(rampdata, ti, gain=1.0, ron=1.0, badpixels=None, dtype='float64', saturation=65631, blank=0, nsig=None, normalize=False): """Loop over the first axis applying ramp processing. *rampdata* is assumed to be a 3D numpy.ndarray containing the result of a nIR observat...
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def acquisition_function_withGradients(self, x): """ Returns the acquisition function and its its gradient at x. """ aqu_x = self.acquisition_function(x) aqu_x_grad = self.d_acquisition_function(x) return aqu_x, aqu_x_grad
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def mark_dirty(self): """Invalidates memoized fingerprints for this payload. Exposed for testing. :API: public """ self._fingerprint_memo_map = {} for field in self._fields.values(): field.mark_dirty()
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def compute_similarities(hdf5_file, data, N_processes): """Compute a matrix of pairwise L2 Euclidean distances among samples from 'data'. This computation is to be done in parallel by 'N_processes' distinct processes. Those processes (which are instances of the class 'Similarities_worker') ...
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def sub_channel(self): """Get the SUB socket channel object.""" if self._sub_channel is None: self._sub_channel = self.sub_channel_class(self.context, self.session, (self.ip, self.io...
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def simplify_other(major, minor, dist): """ Simplify the point featurecollection of poi with another point features accoording by distance. Attention: point featurecollection only Keyword arguments: major -- major geojson minor -- minor geojson dist -- distance return a geoj...
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def build_y(self): """Build transmission line admittance matrix into self.Y""" if not self.n: return self.y1 = mul(self.u, self.g1 + self.b1 * 1j) self.y2 = mul(self.u, self.g2 + self.b2 * 1j) self.y12 = div(self.u, self.r + self.x * 1j) self.m = polar(self.ta...
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def batchnorm_2d(nf:int, norm_type:NormType=NormType.Batch): "A batchnorm2d layer with `nf` features initialized depending on `norm_type`." bn = nn.BatchNorm2d(nf) with torch.no_grad(): bn.bias.fill_(1e-3) bn.weight.fill_(0. if norm_type==NormType.BatchZero else 1.) return bn
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def formatTime (self, record, datefmt=None): """Returns the creation time of the given LogRecord as formatted text. NOTE: The datefmt parameter and self.converter (the time conversion method) are ignored. BSD Syslog Protocol messages always use local time, and by our convention, Syslog...
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def _convertEntities(self, match): """Used in a call to re.sub to replace HTML, XML, and numeric entities with the appropriate Unicode characters. If HTML entities are being converted, any unrecognized entities are escaped.""" x = match.group(1) if self.convertHTMLEntitie...
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def ready(self): """Perform application initialization.""" # Initialize the type extension composer. from . composer import composer composer.discover_extensions() is_migrating = sys.argv[1:2] == ['migrate'] if is_migrating: # Do not register signals and ES i...
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def _setup_file_hierarchy_limit( self, files_count_limit, files_size_limit, temp_dir, cgroups, pid_to_kill): """Start thread that enforces any file-hiearchy limits.""" if files_count_limit is not None or files_size_limit is not None: file_hierarchy_limit_thread = FileHierarchyLim...
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def format_raw_script(raw_script): """Creates single script from a list of script parts. :type raw_script: [basestring] :rtype: basestring """ if six.PY2: script = ' '.join(arg.decode('utf-8') for arg in raw_script) else: script = ' '.join(raw_script) return script.strip()
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def _set_bridge_domain(self, v, load=False): """ Setter method for bridge_domain, mapped from YANG variable /bridge_domain (list) If this variable is read-only (config: false) in the source YANG file, then _set_bridge_domain is considered as a private method. Backends looking to populate this variab...
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def init_app(self, app): """ This callback can be used to initialize an application for the use with this prometheus reporter setup. This is usually used with a flask "app factory" configuration. Please see: http://flask.pocoo.org/docs/1.0/patterns/appfactories/ Note, t...
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def parse_forensic_report(feedback_report, sample, msg_date, nameservers=None, dns_timeout=2.0, strip_attachment_payloads=False, parallel=False): """ Converts a DMARC forensic report and sample to a ``OrderedDict`` Args: ...
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def update_case(case_obj, existing_case): """Update an existing case This will add paths to VCF files, individuals etc Args: case_obj(models.Case) existing_case(models.Case) Returns: updated_case(models.Case): Updated existing case """ variant_nrs = ['nr_va...
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def get_qrcode_url(self, ticket, data=None): """ 通过 ticket 换取二维码地址 详情请参考 https://iot.weixin.qq.com/wiki/new/index.html?page=3-4-4 :param ticket: 二维码 ticket :param data: 额外数据 :return: 二维码地址 """ url = 'https://we.qq.com/d/{ticket}'.format(ticket=tic...
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def write_virtual_memory(self, cpu_id, address, size, bytes_p): """Writes guest virtual memory, access handles (MMIO++) are ignored. This feature is not implemented in the 4.0.0 release but may show up in a dot release. in cpu_id of type int The identifier of the Vi...
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def sync_model(self, comment='', compact_central=False, release_borrowed=True, release_workset=True, save_local=False): """Append a sync model entry to the journal. This instructs Revit to sync the currently open workshared model. Args: comment...
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def alter_field(self, model, old_field, new_field, strict=False): """Ran when the configuration on a field changed.""" is_old_field_hstore = isinstance(old_field, HStoreField) is_new_field_hstore = isinstance(new_field, HStoreField) if not is_old_field_hstore and not is_new_field_hstor...
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def wrap(self, LayoutClass, *args, **kwargs): """ Wraps every layout object pointed in `self.slice` under a `LayoutClass` instance with `args` and `kwargs` passed. """ def wrap_object(layout_object, j): layout_object.fields[j] = self.wrapped_object( La...
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def vxvyvz_to_vrpmllpmbb(vx,vy,vz,l,b,d,XYZ=False,degree=False): """ NAME: vxvyvz_to_vrpmllpmbb PURPOSE: Transform velocities in the rectangular Galactic coordinate frame to the spherical Galactic coordinate frame (can take vector inputs) INPUT: vx - velocity towards the Galact...
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def scan_dir_for_template_files(search_dir): """ Return a map of "likely service/template name" to "template file". This includes all the template files in fixtures and in services. """ template_files = {} cf_dir = os.path.join(search_dir, 'cloudformation') for type in os.listdir(cf_dir): ...
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def save(self, filename): """Save metadata to XML file""" with io.open(filename,'w',encoding='utf-8') as f: f.write(self.xml())
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def filename_for_track(track): """ :return: A safe filename for the given track """ artist = track.user['permalink'] title = track.title return '{}-{}.mp3'.format(artist, title).lower().replace(' ', '_').replace('/', '_')
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def execute_cmdline_scenarios(scenario_name, args, command_args): """ Execute scenario sequences based on parsed command-line arguments. This is useful for subcommands that run scenario sequences, which excludes subcommands such as ``list``, ``login``, and ``matrix``. ``args`` and ``command_args``...
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def _windows_wwns(): ''' Return Fibre Channel port WWNs from a Windows host. ''' ps_cmd = r'Get-WmiObject -ErrorAction Stop ' \ r'-class MSFC_FibrePortHBAAttributes ' \ r'-namespace "root\WMI" | ' \ r'Select -Expandproperty Attributes | ' \ r'%{($_.Por...
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def delete_dataset(self, project_id, dataset_id): """ Delete a dataset of Big query in your project. :param project_id: The name of the project where we have the dataset . :type project_id: str :param dataset_id: The dataset to be delete. :type dataset_id: str :re...
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def data_csv(request, measurement_list): """This view generates a csv output of all data for a strain. For this function to work, you have to provide the filtered set of measurements.""" response = HttpResponse(content_type='text/csv') response['Content-Disposition'] = 'attachment; filename=data.c...
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def merge_tasks(core_collections, sandbox_collections, id_prefix, new_tasks, batch_size=100, wipe=False): """Merge core and sandbox collections into a temporary collection in the sandbox. :param core_collections: Core collection info :type core_collections: Collections :param sandbox_collections: Sandb...
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def validate_float(cls, value): """ Note that int values are accepted. """ if not isinstance(value, (int, float)): raise TypeError( "value must be a number, got %s" % type(value) )
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def maximum_vline_bundle(self, x0, y0, y1): """Compute a maximum set of vertical lines in the unit cells ``(x0,y)`` for :math:`y0 \leq y \leq y1`. INPUTS: y0,x0,x1: int OUTPUT: list of lists of qubits """ y_range = range(y1, y0 - 1, -1) if y0 < ...
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def p_expr_LT_expr(p): """ expr : expr LT expr """ p[0] = make_binary(p.lineno(2), 'LT', p[1], p[3], lambda x, y: x < y)
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def write_tokens_to_file(self): ''' Write api tokens to a file ''' config = dict() config['API_KEY'] = self.api_key config['ACCESS_TOKEN'] = self.access_token config['REFRESH_TOKEN'] = self.refresh_token config['AUTHORIZATION_CODE'] = self.authorization_code if se...
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def clear_adb_log(self): """Clears cached adb content.""" try: self._ad.adb.logcat('-c') except adb.AdbError as e: # On Android O, the clear command fails due to a known bug. # Catching this so we don't crash from this Android issue. if b'failed to...
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def remove(path): """Wrapper that switches between os.remove and shutil.rmtree depending on whether the provided path is a file or directory. """ if not os.path.exists(path): return if os.path.isdir(path): return shutil.rmtree(path) if os.path.isfile(path): return os.r...
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def get_Mapping_key_value(mp): """Retrieves the key and value types from a PEP 484 mapping or subclass of such. mp must be a (subclass of) typing.Mapping. """ try: res = _select_Generic_superclass_parameters(mp, typing.Mapping) except TypeError: res = None if res is None: ...
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def _build_filter(*patterns): """ Given a list of patterns, return a callable that will be true only if the input matches at least one of the patterns. """ return lambda name: any(fnmatchcase(name, pat=pat) for pat in patterns)
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def from_python_file( cls, python_file, lambdas_path, json_filename: str, stem: str ): """Builds GrFN object from Python file.""" with open(python_file, "r") as f: pySrc = f.read() return cls.from_python_src(pySrc, lambdas_path, json_filename, stem)
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def get_version(cls, settings: Dict[str, Any], path: str) -> Optional[str]: """Generate the version string to be used in static URLs. ``settings`` is the `Application.settings` dictionary and ``path`` is the relative location of the requested asset on the filesystem. The returned value ...
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def is_playing_shared_game(self, steamID, appid_playing, format=None): """Returns valid lender SteamID if game currently played is borrowed. steamID: The users ID appid_playing: The game player is currently playing format: Return format. None defaults to json. (json, xml, vdf) ...
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def AddRow(self, *args): ''' Parms are a variable number of Elements ''' NumRows = len(self.Rows) # number of existing rows is our row number CurrentRowNumber = NumRows # this row's number CurrentRow = [] # start with a blank row and build up # ------------------------- Add t...
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def DoesNotContain(self, value): """Sets the type of the WHERE clause as "does not contain". Args: value: The value to be used in the WHERE condition. Returns: The query builder that this WHERE builder links to. """ self._awql = self._CreateSingleValueCondition(value, 'DOES_NOT_CONTAIN...
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def is_list_of_list(item): """ check whether the item is list (tuple) and consist of list (tuple) elements """ if ( type(item) in (list, tuple) and len(item) and isinstance(item[0], (list, tuple)) ): return True return False
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def expand_user(path): """Expand '~'-style usernames in strings. This is similar to :func:`os.path.expanduser`, but it computes and returns extra information that will be useful if the input was being used in computing completions, and you wish to return the completions with the original '~' instea...
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def chunked_qs(qs, chunk_size=10000, fields=None): """ Generator to iterate over the given QuerySet, chunk_size rows at a time Usage: >>> qs = FailureLine.objects.filter(action='test_result') >>> for qs in chunked_qs(qs, chunk_size=10000, fields=['id', 'message']): ... for line...
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def p_params(self, p): 'params : params_begin param_end' p[0] = p[1] + (p[2],) p.set_lineno(0, p.lineno(1))
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def _GetEventData( self, parser_mediator, record_index, evt_record, recovered=False): """Retrieves event data from the Windows EventLog (EVT) record. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. record...
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def run(self, model, tol=0.001, max_iters=999, verbose=True): """ Runs EM iterations :param model: Normalization model (1: Gene->Allele->Isoform, 2: Gene->Isoform->Allele, 3: Gene->Isoform*Allele, 4: Gene*Isoform*Allele) :param tol: Tolerance for termination :param max_iters: Ma...
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def lookup(self, vtype, vname, target_id=None): """Return value of vname from the variable store vtype. Valid vtypes are `strings` 'counters', and `pending`. If the value is not found in the current steps store, earlier steps will be checked. If not found, '', 0, or (None, None) is retu...
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def convertVariable(self, key, varName, varValue): """Puts the function in the globals() of the main module.""" if isinstance(varValue, encapsulation.FunctionEncapsulation): result = varValue.getFunction() # Update the global scope of the function to match the current module ...
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def _is_better_match(x, y, matched_a, matched_b, attributes_dict_a, attributes_dict_b): """ :param x: The first element of a possible match. :param y: The second element of a possible match. :param matched_a: The current matches for the first set. :param...
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def parse_mailto(mailto_str): """ Interpret mailto-string :param mailto_str: the string to interpret. Must conform to :rfc:2368. :type mailto_str: str :return: the header fields and the body found in the mailto link as a tuple of length two :rtype: tuple(dict(str->list(str)), str) "...
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def _check_quotas(self, time_ms): """ Check if we have violated our quota for any metric that has a configured quota """ for metric in self._metrics: if metric.config and metric.config.quota: value = metric.value(time_ms) if not metric....
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