kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def parse_filespec(fspec, sep=':', gpat='*'): """ Parse given filespec `fspec` and return [(filetype, filepath)]. Because anyconfig.load should find correct file's type to load by the file extension, this function will not try guessing file's type if not file type is specified explicitly. :par...	[ "def", "parse_filespec", "(", "fspec", ",", "sep", "=", "':'", ",", "gpat", "=", "'*'", ")", ":", "if", "sep", "in", "fspec", ":", "tpl", "=", "(", "ftype", ",", "fpath", ")", "=", "tuple", "(", "fspec", ".", "split", "(", "sep", ")", ")", "els...	34.375	17.8125
def _round(self): """ This is the environment implementation of :meth:`BaseAnchor.round`. Subclasses may override this method. """ self.x = normalizers.normalizeRounding(self.x) self.y = normalizers.normalizeRounding(self.y)	[ "def", "_round", "(", "self", ")", ":", "self", ".", "x", "=", "normalizers", ".", "normalizeRounding", "(", "self", ".", "x", ")", "self", ".", "y", "=", "normalizers", ".", "normalizeRounding", "(", "self", ".", "y", ")" ]	30.333333	12.333333
def stop_capture(self, adapter_number): """ Stops a packet capture. :param adapter_number: adapter number """ try: adapter = self._ethernet_adapters[adapter_number] except KeyError: raise DockerError("Adapter {adapter_number} doesn't exist on Doc...	[ "def", "stop_capture", "(", "self", ",", "adapter_number", ")", ":", "try", ":", "adapter", "=", "self", ".", "_ethernet_adapters", "[", "adapter_number", "]", "except", "KeyError", ":", "raise", "DockerError", "(", "\"Adapter {adapter_number} doesn't exist on Docker ...	43.653846	34.5
def choose_best_mask(self): """This method returns the index of the "best" mask as defined by having the lowest total penalty score. The penalty rules are defined by the standard. The mask with the lowest total score should be the easiest to read by optical scanners. """ ...	[ "def", "choose_best_mask", "(", "self", ")", ":", "self", ".", "scores", "=", "[", "]", "for", "n", "in", "range", "(", "len", "(", "self", ".", "masks", ")", ")", ":", "self", ".", "scores", ".", "append", "(", "[", "0", ",", "0", ",", "0", ...	36.028986	13.376812
def add_checkpoint_file(self,filename): """ Add filename as a checkpoint file for this DAG node @param filename: checkpoint filename to add """ if filename not in self.__checkpoint_files: self.__checkpoint_files.append(filename) if not isinstance(self.job(), CondorDAGManJob): ...	[ "def", "add_checkpoint_file", "(", "self", ",", "filename", ")", ":", "if", "filename", "not", "in", "self", ".", "__checkpoint_files", ":", "self", ".", "__checkpoint_files", ".", "append", "(", "filename", ")", "if", "not", "isinstance", "(", "self", ".", ...	40.7	7.5
def disconnect(self, args, *kwargs): """ WebSocket was disconnected - leave the IRC channel. """ quit_message = "%s %s" % (settings.GNOTTY_VERSION_STRING, settings.GNOTTY_PROJECT_URL) self.client.connection.quit(quit_message) super(IRCN...	[ "def", "disconnect", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "quit_message", "=", "\"%s %s\"", "%", "(", "settings", ".", "GNOTTY_VERSION_STRING", ",", "settings", ".", "GNOTTY_PROJECT_URL", ")", "self", ".", "client", ".", "conne...	44.5	12.25
def _schedule_next_run(self): """ Compute the instant when this job should run next. """ if self.unit not in ('seconds', 'minutes', 'hours', 'days', 'weeks'): raise ScheduleValueError('Invalid unit') if self.latest is not None: if not (self.latest >= self...	[ "def", "_schedule_next_run", "(", "self", ")", ":", "if", "self", ".", "unit", "not", "in", "(", "'seconds'", ",", "'minutes'", ",", "'hours'", ",", "'days'", ",", "'weeks'", ")", ":", "raise", "ScheduleValueError", "(", "'Invalid unit'", ")", "if", "self"...	47.565217	18.463768
def gpg_profile_put_key( blockchain_id, key_id, key_name=None, immutable=True, txid=None, key_url=None, use_key_server=True, key_server=None, proxy=None, wallet_keys=None, gpghome=None ): """ Put a local GPG key into a blockchain ID's global account. If the URL is not given, the key will be replicated to th...	[ "def", "gpg_profile_put_key", "(", "blockchain_id", ",", "key_id", ",", "key_name", "=", "None", ",", "immutable", "=", "True", ",", "txid", "=", "None", ",", "key_url", "=", "None", ",", "use_key_server", "=", "True", ",", "key_server", "=", "None", ",", ...	41.222222	29.944444
def save(self): """ Easy save(insert or update) for db models """ try: if self.exists() is False: self.db.session.add(self) # self.db.session.merge(self) self.db.session.commit() except (Exception, BaseException) as error: i...	[ "def", "save", "(", "self", ")", ":", "try", ":", "if", "self", ".", "exists", "(", ")", "is", "False", ":", "self", ".", "db", ".", "session", ".", "add", "(", "self", ")", "# self.db.session.merge(self)\r", "self", ".", "db", ".", "session", ".", ...	35.818182	9.454545
def doNew(self, WHAT={}, **params): """This function will perform the command -new.""" if hasattr(WHAT, '_modified'): for key in WHAT: if key not in ['RECORDID','MODID']: if WHAT.__new2old__.has_key(key): self._addDBParam(WHAT.__new2old__[key].encode('utf-8'), WHAT[key]) else: self._ad...	[ "def", "doNew", "(", "self", ",", "WHAT", "=", "{", "}", ",", "", "", "params", ")", ":", "if", "hasattr", "(", "WHAT", ",", "'_modified'", ")", ":", "for", "key", "in", "WHAT", ":", "if", "key", "not", "in", "[", "'RECORDID'", ",", "'MODID'", ...	29.461538	19.923077
def enable_counter(self, base=None, database='counter', collection='counters'): """Register the builtin counter model, return the registered Counter class and the corresponding ``CounterMixin`` class. The ``CounterMixin`` automatically increases and decreases the counter ...	[ "def", "enable_counter", "(", "self", ",", "base", "=", "None", ",", "database", "=", "'counter'", ",", "collection", "=", "'counters'", ")", ":", "Counter", ".", "_database_", "=", "database", "Counter", ".", "_collection_", "=", "collection", "bases", "=",...	40.584906	17.849057
def check_shape(meth): """ Decorator for larray magic methods, to ensure that the operand has the same shape as the array. """ @wraps(meth) def wrapped_meth(self, val): if isinstance(val, (larray, numpy.ndarray)): if val.shape != self._shape: raise ValueError(...	[ "def", "check_shape", "(", "meth", ")", ":", "@", "wraps", "(", "meth", ")", "def", "wrapped_meth", "(", "self", ",", "val", ")", ":", "if", "isinstance", "(", "val", ",", "(", "larray", ",", "numpy", ".", "ndarray", ")", ")", ":", "if", "val", "...	35.666667	15.333333
def check_docstring_first(src, filename='<unknown>'): # type: (bytes, str) -> int """Returns nonzero if the source has what looks like a docstring that is not at the beginning of the source. A string will be considered a docstring if it is a STRING token with a col offset of 0. """ found_do...	[ "def", "check_docstring_first", "(", "src", ",", "filename", "=", "'<unknown>'", ")", ":", "# type: (bytes, str) -> int", "found_docstring_line", "=", "None", "found_code_line", "=", "None", "tok_gen", "=", "tokenize_tokenize", "(", "io", ".", "BytesIO", "(", "src",...	36.378378	17.162162
def initiate(self, transport, to = None): """Initiate an XMPP connection over the `transport`. :Parameters: - `transport`: an XMPP transport instance - `to`: peer name (defaults to own jid domain part) """ if to is None: to = JID(self.me.domain) ...	[ "def", "initiate", "(", "self", ",", "transport", ",", "to", "=", "None", ")", ":", "if", "to", "is", "None", ":", "to", "=", "JID", "(", "self", ".", "me", ".", "domain", ")", "return", "StreamBase", ".", "initiate", "(", "self", ",", "transport",...	36.1	13.4
def tokenize(self, data): ''' Tokenize sentence. Args: [n-gram, n-gram, n-gram, ...] ''' super().tokenize(data) token_tuple_zip = self.n_gram.generate_tuple_zip(self.token, self.n) token_list = [] self.token = ["".join(list(token_tuple)) for ...	[ "def", "tokenize", "(", "self", ",", "data", ")", ":", "super", "(", ")", ".", "tokenize", "(", "data", ")", "token_tuple_zip", "=", "self", ".", "n_gram", ".", "generate_tuple_zip", "(", "self", ".", "token", ",", "self", ".", "n", ")", "token_list", ...	28.333333	25.166667
def network_get_primary_address(binding): ''' Deprecated since Juju 2.3; use network_get() Retrieve the primary network address for a named binding :param binding: string. The name of a relation of extra-binding :return: string. The primary IP address for the named binding :raise: NotImplement...	[ "def", "network_get_primary_address", "(", "binding", ")", ":", "cmd", "=", "[", "'network-get'", ",", "'--primary-address'", ",", "binding", "]", "try", ":", "response", "=", "subprocess", ".", "check_output", "(", "cmd", ",", "stderr", "=", "subprocess", "."...	36.590909	21.863636
def equal(self, what, epsilon=None): """compares given object ``X`` with an expected ``Y`` object. It primarily assures that the compared objects are absolute equal ``==``. :param what: the expected value :param epsilon: a delta to leverage upper-bound floating point permissiveness ...	[ "def", "equal", "(", "self", ",", "what", ",", "epsilon", "=", "None", ")", ":", "try", ":", "comparison", "=", "DeepComparison", "(", "self", ".", "obj", ",", "what", ",", "epsilon", ")", ".", "compare", "(", ")", "error", "=", "False", "except", ...	31.166667	23.266667
def export_handle(self, directory): """Get a filehandle for exporting""" filename = getattr(self, 'filename') dest_file = "%s/%s" % (directory, filename) dest_dir = os.path.dirname(dest_file) if not os.path.isdir(dest_dir): os.mkdir(dest_dir, 0o700) return op...	[ "def", "export_handle", "(", "self", ",", "directory", ")", ":", "filename", "=", "getattr", "(", "self", ",", "'filename'", ")", "dest_file", "=", "\"%s/%s\"", "%", "(", "directory", ",", "filename", ")", "dest_dir", "=", "os", ".", "path", ".", "dirnam...	36.666667	8.222222
def encodefuns(): """Returns a dictionary mapping ICC type signature sig to encoding function. Each function returns a string comprising the content of the encoded value. To form the full value, the type sig and the 4 zero bytes should be prefixed (8 bytes). """ def desc(ascii): """Re...	[ "def", "encodefuns", "(", ")", ":", "def", "desc", "(", "ascii", ")", ":", "\"\"\"Return textDescription type [ICC 2001] 6.5.17. The ASCII part is\n filled in with the string `ascii`, the Unicode and ScriptCode parts\n are empty.\"\"\"", "ascii", "+=", "'\\x00'", "n", ...	33.038462	19.807692
def _scene(self): """ A cached version of the pyembree scene. """ return _EmbreeWrap(vertices=self.mesh.vertices, faces=self.mesh.faces, scale=self._scale)	[ "def", "_scene", "(", "self", ")", ":", "return", "_EmbreeWrap", "(", "vertices", "=", "self", ".", "mesh", ".", "vertices", ",", "faces", "=", "self", ".", "mesh", ".", "faces", ",", "scale", "=", "self", ".", "_scale", ")" ]	33.571429	8.428571
def find_peaks(sig): """ Find hard peaks and soft peaks in a signal, defined as follows: - Hard peak: a peak that is either /\ or \/ - Soft peak: a peak that is either /-\ or \-/ In this case we define the middle as the peak Parameters ---------- sig : np array The 1d signa...	[ "def", "find_peaks", "(", "sig", ")", ":", "if", "len", "(", "sig", ")", "==", "0", ":", "return", "np", ".", "empty", "(", "[", "0", "]", ")", ",", "np", ".", "empty", "(", "[", "0", "]", ")", "tmp", "=", "sig", "[", "1", ":", "]", "tmp"...	25.94	20.5
def filter_for_filesize(result, size=None): """ Will test the filepath result and test if its size is at least self.filesize :param result: a list of dicts returned by Snakebite ls :param size: the file size in MB a file should be at least to trigger True :return: (bool) dependi...	[ "def", "filter_for_filesize", "(", "result", ",", "size", "=", "None", ")", ":", "if", "size", ":", "log", "=", "LoggingMixin", "(", ")", ".", "log", "log", ".", "debug", "(", "'Filtering for file size >= %s in files: %s'", ",", "size", ",", "map", "(", "l...	41.944444	20.166667
def create_thing(self, lid): """Create a new Thing with a local id (lid). Returns a [Thing](Thing.m.html#IoticAgent.IOT.Thing.Thing) object if successful or if the Thing already exists Raises [IOTException](./Exceptions.m.html#IoticAgent.IOT.Exceptions.IOTException) containing...	[ "def", "create_thing", "(", "self", ",", "lid", ")", ":", "evt", "=", "self", ".", "create_thing_async", "(", "lid", ")", "self", ".", "_wait_and_except_if_failed", "(", "evt", ")", "try", ":", "with", "self", ".", "__new_things", ":", "return", "self", ...	49.409091	29.909091
def wait_for_tasks_to_complete(batch_service_client, job_ids, timeout): """Returns when all tasks in the specified job reach the Completed state. :param batch_service_client: A Batch service client. :type batch_service_client: `azure.batch.BatchServiceClient` :param str job_id: The id of the job whose ...	[ "def", "wait_for_tasks_to_complete", "(", "batch_service_client", ",", "job_ids", ",", "timeout", ")", ":", "timeout_expiration", "=", "datetime", ".", "datetime", ".", "now", "(", ")", "+", "timeout", "print", "(", "\"Monitoring all tasks for 'Completed' state, timeout...	44.794118	22.794118
def toArray(self): """ Returns a copy of this SparseVector as a 1-dimensional NumPy array. """ arr = np.zeros((self.size,), dtype=np.float64) arr[self.indices] = self.values return arr	[ "def", "toArray", "(", "self", ")", ":", "arr", "=", "np", ".", "zeros", "(", "(", "self", ".", "size", ",", ")", ",", "dtype", "=", "np", ".", "float64", ")", "arr", "[", "self", ".", "indices", "]", "=", "self", ".", "values", "return", "arr"...	32.285714	13.428571
def deferred_emails(): """Checks for deferred email, that otherwise fill up the queue.""" status = SERVER_STATUS['OK'] count = Message.objects.deferred().count() if DEFERRED_WARNING_THRESHOLD <= count < DEFERRED_DANGER_THRESHOLD: status = SERVER_STATUS['WARNING'] if count >= DEFERRED_DANGER...	[ "def", "deferred_emails", "(", ")", ":", "status", "=", "SERVER_STATUS", "[", "'OK'", "]", "count", "=", "Message", ".", "objects", ".", "deferred", "(", ")", ".", "count", "(", ")", "if", "DEFERRED_WARNING_THRESHOLD", "<=", "count", "<", "DEFERRED_DANGER_TH...	34.266667	17.6
def addcomponent(self, data): """ A method to create a component in Bugzilla. Takes a dict, with the following elements: product: The product to create the component in component: The name of the component to create description: A one sentence summary of the component ...	[ "def", "addcomponent", "(", "self", ",", "data", ")", ":", "data", "=", "data", ".", "copy", "(", ")", "self", ".", "_component_data_convert", "(", "data", ")", "return", "self", ".", "_proxy", ".", "Component", ".", "create", "(", "data", ")" ]	47.45	18.15
def model_instance_diff(old, new): """ Calculates the differences between two model instances. One of the instances may be ``None`` (i.e., a newly created model or deleted model). This will cause all fields with a value to have changed (from ``None``). :param old: The old state of the model instance. ...	[ "def", "model_instance_diff", "(", "old", ",", "new", ")", ":", "from", "auditlog", ".", "registry", "import", "auditlog", "if", "not", "(", "old", "is", "None", "or", "isinstance", "(", "old", ",", "Model", ")", ")", ":", "raise", "TypeError", "(", "\...	38.728814	23.779661
def unique(seq, key=None, return_as=None): """Unique the seq and keep the order. Instead of the slow way: `lambda seq: (x for index, x in enumerate(seq) if seq.index(x)==index)` :param seq: raw sequence. :param return_as: generator for default, or list / set / str... >>> from torequests.u...	[ "def", "unique", "(", "seq", ",", "key", "=", "None", ",", "return_as", "=", "None", ")", ":", "seen", "=", "set", "(", ")", "add", "=", "seen", ".", "add", "if", "key", ":", "generator", "=", "(", "x", "for", "x", "in", "seq", "if", "key", "...	29.0625	20.3125
def add_scope(self, scope_type, scope_name, scope_start, is_method=False): """we identified a scope and add it to positions.""" if self._curr is not None: self._curr['end'] = scope_start - 1 # close last scope self._curr = { 'type': scope_type, 'name': scope_name, ...	[ "def", "add_scope", "(", "self", ",", "scope_type", ",", "scope_name", ",", "scope_start", ",", "is_method", "=", "False", ")", ":", "if", "self", ".", "_curr", "is", "not", "None", ":", "self", ".", "_curr", "[", "'end'", "]", "=", "scope_start", "-",...	39.125	14.25
def extract_header_comment_key_value_tuples_from_file(file_descriptor): """ Extracts tuples representing comments and localization entries from strings file. Args: file_descriptor (file): The file to read the tuples from Returns: list : List of tuples representing the headers and localizat...	[ "def", "extract_header_comment_key_value_tuples_from_file", "(", "file_descriptor", ")", ":", "file_data", "=", "file_descriptor", ".", "read", "(", ")", "findall_result", "=", "re", ".", "findall", "(", "HEADER_COMMENT_KEY_VALUE_TUPLES_REGEX", ",", "file_data", ",", "r...	37.428571	26.857143
def dostilt(s, bed_az, bed_dip): """ Rotates "s" tensor to stratigraphic coordinates Parameters __________ s : [x11,x22,x33,x12,x23,x13] - the six tensor elements bed_az : bedding dip direction bed_dip : bedding dip Return s_rot : [x11,x22,x33,x12,x23,x13] - after rotation ""...	[ "def", "dostilt", "(", "s", ",", "bed_az", ",", "bed_dip", ")", ":", "tau", ",", "Vdirs", "=", "doseigs", "(", "s", ")", "Vrot", "=", "[", "]", "for", "evec", "in", "Vdirs", ":", "d", ",", "i", "=", "dotilt", "(", "evec", "[", "0", "]", ",", ...	23.809524	18.761905
def get_queries_batch(self, query_get_request, project): """GetQueriesBatch. [Preview API] Gets a list of queries by ids (Maximum 1000) :param :class:`<QueryBatchGetRequest> <azure.devops.v5_1.work_item_tracking.models.QueryBatchGetRequest>` query_get_request: :param str project: Project...	[ "def", "get_queries_batch", "(", "self", ",", "query_get_request", ",", "project", ")", ":", "route_values", "=", "{", "}", "if", "project", "is", "not", "None", ":", "route_values", "[", "'project'", "]", "=", "self", ".", "_serialize", ".", "url", "(", ...	57.647059	23.411765
def main(args=sys.argv): """ Main command-line invocation. """ try: opts, args = getopt.gnu_getopt(args[1:], 'p:o:jdt', [ 'jspath=', 'output=', 'private', 'json', 'dependencies', 'test', 'help']) opts = dict(opts) except getopt.GetoptError: usage() ...	[ "def", "main", "(", "args", "=", "sys", ".", "argv", ")", ":", "try", ":", "opts", ",", "args", "=", "getopt", ".", "gnu_getopt", "(", "args", "[", "1", ":", "]", ",", "'p:o:jdt'", ",", "[", "'jspath='", ",", "'output='", ",", "'private'", ",", "...	30.277778	17.555556
def main(): """ NAME replace_AC_specimens.py DESCRIPTION finds anisotropy corrected data and replaces that specimen with it. puts in pmag_specimen format file SYNTAX replace_AC_specimens.py [command line options] OPTIONS -h prints help mes...	[ "def", "main", "(", ")", ":", "dir_path", "=", "'.'", "tspec", "=", "\"thellier_specimens.txt\"", "aspec", "=", "\"AC_specimens.txt\"", "ofile", "=", "\"TorAC_specimens.txt\"", "critfile", "=", "\"pmag_criteria.txt\"", "ACSamplist", ",", "Samplist", ",", "sigmin", "...	35.32967	16.384615
def process_line( line, # type: Text filename, # type: str line_number, # type: int finder=None, # type: Optional[PackageFinder] comes_from=None, # type: Optional[str] options=None, # type: Optional[optparse.Values] session=None, # type: Optional[PipSession] wheel_cache=None, # t...	[ "def", "process_line", "(", "line", ",", "# type: Text", "filename", ",", "# type: str", "line_number", ",", "# type: int", "finder", "=", "None", ",", "# type: Optional[PackageFinder]", "comes_from", "=", "None", ",", "# type: Optional[str]", "options", "=", "None", ...	40.456	16.744
def dehtml(text): '''Remove HTML tag in input text and format the texts accordingly. ''' # added by BoPeng to handle html output from kernel # # Do not understand why, but I cannot define the class outside of the # function. try: # python 2 from HTMLParser import HTMLParser ...	[ "def", "dehtml", "(", "text", ")", ":", "# added by BoPeng to handle html output from kernel", "#", "# Do not understand why, but I cannot define the class outside of the", "# function.", "try", ":", "# python 2", "from", "HTMLParser", "import", "HTMLParser", "except", "ImportErr...	30.62069	16.448276
def _load(self, config): """ Load this config from an existing config Parameters: ----------- config : filename, config object, or dict to load Returns: -------- params : configuration parameters """ if isstring(config): self.filenam...	[ "def", "_load", "(", "self", ",", "config", ")", ":", "if", "isstring", "(", "config", ")", ":", "self", ".", "filename", "=", "config", "params", "=", "yaml", ".", "load", "(", "open", "(", "config", ")", ")", "elif", "isinstance", "(", "config", ...	28.692308	14
def header_length(header): """Calculates the ciphertext message header length, given a complete header. :param header: Complete message header object :type header: aws_encryption_sdk.structures.MessageHeader :rtype: int """ # Because encrypted data key lengths may not be knowable until the ciph...	[ "def", "header_length", "(", "header", ")", ":", "# Because encrypted data key lengths may not be knowable until the ciphertext", "# is received from the providers, just serialize the header directly.", "header_length", "=", "len", "(", "serialize_header", "(", "header", ")", ")", ...	47.153846	21.230769
def validate_metadata_token(self, claims, endpoint): """ If the token endpoint is used in the grant type, the value of this parameter MUST be the same as the value of the "grant_type" parameter passed to the token endpoint defined in the grant type definition. """ ...	[ "def", "validate_metadata_token", "(", "self", ",", "claims", ",", "endpoint", ")", ":", "self", ".", "_grant_types", ".", "extend", "(", "endpoint", ".", "_grant_types", ".", "keys", "(", ")", ")", "claims", ".", "setdefault", "(", "\"token_endpoint_auth_meth...	58.846154	32.692308
def smart_str(s, encoding='utf-8', errors='strict'): """ Returns a bytestring version of 's', encoded as specified in 'encoding'. If strings_only is True, don't convert (some) non-string-like objects. from django """ if not isinstance(s, basestring): try: return str(s) ...	[ "def", "smart_str", "(", "s", ",", "encoding", "=", "'utf-8'", ",", "errors", "=", "'strict'", ")", ":", "if", "not", "isinstance", "(", "s", ",", "basestring", ")", ":", "try", ":", "return", "str", "(", "s", ")", "except", "UnicodeEncodeError", ":", ...	37.416667	19.25
def http_proxy(self): """Set ivy to use an http proxy. Expects a string of the form http://<host>:<port> """ if os.getenv('HTTP_PROXY'): return os.getenv('HTTP_PROXY') if os.getenv('http_proxy'): return os.getenv('http_proxy') return self.get_options().http_proxy	[ "def", "http_proxy", "(", "self", ")", ":", "if", "os", ".", "getenv", "(", "'HTTP_PROXY'", ")", ":", "return", "os", ".", "getenv", "(", "'HTTP_PROXY'", ")", "if", "os", ".", "getenv", "(", "'http_proxy'", ")", ":", "return", "os", ".", "getenv", "(...	29.1	9.8
def xml(self, operator='set', indent = ""): """Serialize the metadata field to XML""" xml = indent + "<meta id=\"" + self.key + "\"" if operator != 'set': xml += " operator=\"" + operator + "\"" if not self.value: xml += " />" else: xml += ">" ...	[ "def", "xml", "(", "self", ",", "operator", "=", "'set'", ",", "indent", "=", "\"\"", ")", ":", "xml", "=", "indent", "+", "\"<meta id=\\\"\"", "+", "self", ".", "key", "+", "\"\\\"\"", "if", "operator", "!=", "'set'", ":", "xml", "+=", "\" operator=\\...	35.4	12.5
def _to_add_with_category(self, catid): ''' Used for info2. :param catid: the uid of category ''' catinfo = MCategory.get_by_uid(catid) kwd = { 'uid': self._gen_uid(), 'userid': self.userinfo.user_name if self.userinfo else '', 'gcat0'...	[ "def", "_to_add_with_category", "(", "self", ",", "catid", ")", ":", "catinfo", "=", "MCategory", ".", "get_by_uid", "(", "catid", ")", "kwd", "=", "{", "'uid'", ":", "self", ".", "_gen_uid", "(", ")", ",", "'userid'", ":", "self", ".", "userinfo", "."...	32.222222	19.111111
def until(coro, coro_test, assert_coro=None, args, *kw): """ Repeatedly call `coro` coroutine function until `coro_test` returns `True`. This function is the inverse of `paco.whilst()`. This function is a coroutine. Arguments: coro (coroutinefunction): coroutine function to execute. ...	[ "def", "until", "(", "coro", ",", "coro_test", ",", "assert_coro", "=", "None", ",", "", "args", ",", "", "*", "kw", ")", ":", "@", "asyncio", ".", "coroutine", "def", "assert_coro", "(", "value", ")", ":", "return", "not", "value", "return", "(", ...	26.604651	23.72093
def init_app(self, app): """ Register this extension with the flask app :param app: A flask application """ # Save this so we can use it later in the extension if not hasattr(app, 'extensions'): # pragma: no cover app.extensions = {} app.extensions[...	[ "def", "init_app", "(", "self", ",", "app", ")", ":", "# Save this so we can use it later in the extension", "if", "not", "hasattr", "(", "app", ",", "'extensions'", ")", ":", "# pragma: no cover", "app", ".", "extensions", "=", "{", "}", "app", ".", "extensions...	36	16.777778
def _new_connection_file(self): """ Generate a new connection file Taken from jupyter_client/console_app.py Licensed under the BSD license """ # Check if jupyter_runtime_dir exists (Spyder addition) if not osp.isdir(jupyter_runtime_dir()): tr...	[ "def", "_new_connection_file", "(", "self", ")", ":", "# Check if jupyter_runtime_dir exists (Spyder addition)\r", "if", "not", "osp", ".", "isdir", "(", "jupyter_runtime_dir", "(", ")", ")", ":", "try", ":", "os", ".", "makedirs", "(", "jupyter_runtime_dir", "(", ...	35.421053	14.157895
def get_all_migrations(path, databases=None): """ Returns a dictionary of database => [migrations] representing all migrations contained in ``path``. """ # database: [(number, full_path)] possible_migrations = defaultdict(list) try: in_directory = sorted(get_file_list(path)) ...	[ "def", "get_all_migrations", "(", "path", ",", "databases", "=", "None", ")", ":", "# database: [(number, full_path)]", "possible_migrations", "=", "defaultdict", "(", "list", ")", "try", ":", "in_directory", "=", "sorted", "(", "get_file_list", "(", "path", ")", ...	33.581395	17.069767
def vowelinstem(self): """vowelinstem() is TRUE <=> k0,...j contains a vowel""" for i in range(self.k0, self.j + 1): if not self.cons(i): return 1 return 0	[ "def", "vowelinstem", "(", "self", ")", ":", "for", "i", "in", "range", "(", "self", ".", "k0", ",", "self", ".", "j", "+", "1", ")", ":", "if", "not", "self", ".", "cons", "(", "i", ")", ":", "return", "1", "return", "0" ]	34.5	11.333333
def _get_snpeff_transcript(self, transcript_info): """Create a transcript based on the snpeff annotation Args: transcript_info (dict): A dict with snpeff info Returns: transcript (puzzle.models.Transcript): A Transcripts """ transcript = ...	[ "def", "_get_snpeff_transcript", "(", "self", ",", "transcript_info", ")", ":", "transcript", "=", "Transcript", "(", "hgnc_symbol", "=", "transcript_info", ".", "get", "(", "'Gene_Name'", ")", ",", "transcript_id", "=", "transcript_info", ".", "get", "(", "'Fea...	41.8	19.5
def create_new_project(): '''Creates a new XBMC Addon directory based on user input''' readline.parse_and_bind('tab: complete') print \ ''' xbmcswift2 - A micro-framework for creating XBMC plugins. xbmc@jonathanbeluch.com -- ''' print 'I\'m going to ask you a few questions to get this proje...	[ "def", "create_new_project", "(", ")", ":", "readline", ".", "parse_and_bind", "(", "'tab: complete'", ")", "print", "'''\n xbmcswift2 - A micro-framework for creating XBMC plugins.\n xbmc@jonathanbeluch.com\n --\n'''", "print", "'I\\'m going to ask you a few questions to get th...	29.8	24.018182
def consume_arguments(self, argument_list): """ Takes arguments from a list while there are parameters that can accept them """ while True: argument_count = len(argument_list) for parameter in self.values(): argument_list = parameter.consume_argume...	[ "def", "consume_arguments", "(", "self", ",", "argument_list", ")", ":", "while", "True", ":", "argument_count", "=", "len", "(", "argument_list", ")", "for", "parameter", "in", "self", ".", "values", "(", ")", ":", "argument_list", "=", "parameter", ".", ...	41.9	12.7
def print_help(self): """Prints usage of all registered commands, collapsing aliases into one record """ seen_aliases = set() print('-'*80) for cmd in sorted(self.cmds): if cmd not in self.builtin_cmds: if cmd not in seen_aliases: ...	[ "def", "print_help", "(", "self", ")", ":", "seen_aliases", "=", "set", "(", ")", "print", "(", "'-'", "*", "80", ")", "for", "cmd", "in", "sorted", "(", "self", ".", "cmds", ")", ":", "if", "cmd", "not", "in", "self", ".", "builtin_cmds", ":", "...	41.833333	11.888889
def get_external_store(self, project_name, store_name): """ get the logstore meta info Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type store_name: string :param store_name: the logstore n...	[ "def", "get_external_store", "(", "self", ",", "project_name", ",", "store_name", ")", ":", "headers", "=", "{", "}", "params", "=", "{", "}", "resource", "=", "\"/externalstores/\"", "+", "store_name", "(", "resp", ",", "header", ")", "=", "self", ".", ...	31.08	18.64
def truncate_table(self, table): """ Responsys.truncateTable call Accepts: InteractObject table Returns True on success """ table = table.get_soap_object(self.client) return self.call('truncateTable', table)	[ "def", "truncate_table", "(", "self", ",", "table", ")", ":", "table", "=", "table", ".", "get_soap_object", "(", "self", ".", "client", ")", "return", "self", ".", "call", "(", "'truncateTable'", ",", "table", ")" ]	26	14.7
def get_location(query, format, api_key): """Get geographic data of a lab in a coherent way for all labs.""" # Play nice with the API... sleep(1) geolocator = OpenCage(api_key=api_key, timeout=10) # Variables for storing the data data = {"city": None, "address_1": None, ...	[ "def", "get_location", "(", "query", ",", "format", ",", "api_key", ")", ":", "# Play nice with the API...", "sleep", "(", "1", ")", "geolocator", "=", "OpenCage", "(", "api_key", "=", "api_key", ",", "timeout", "=", "10", ")", "# Variables for storing the data"...	37.27957	14.870968
def top10(rest): """ Return the top n (default 10) highest entities by Karmic value. Use negative numbers for the bottom N. """ if rest: topn = int(rest) else: topn = 10 selection = Karma.store.list(topn) res = ' '.join('(%s: %s)' % (', '.join(n), k) for n, k in selection) return res	[ "def", "top10", "(", "rest", ")", ":", "if", "rest", ":", "topn", "=", "int", "(", "rest", ")", "else", ":", "topn", "=", "10", "selection", "=", "Karma", ".", "store", ".", "list", "(", "topn", ")", "res", "=", "' '", ".", "join", "(", "'(%s: ...	23.833333	19
def highlight_code(text, lexer_name='python', kwargs): """ Highlights a block of text using ANSI tags based on language syntax. Args: text (str): plain text to highlight lexer_name (str): name of language kwargs: passed to pygments.lexers.get_lexer_by_name Returns: ...	[ "def", "highlight_code", "(", "text", ",", "lexer_name", "=", "'python'", ",", "", "", "kwargs", ")", ":", "# Resolve extensions to languages", "lexer_name", "=", "{", "'py'", ":", "'python'", ",", "'h'", ":", "'cpp'", ",", "'cpp'", ":", "'cpp'", ",", "'...	31.8	20.8
def set_state(self, state): """Set the runtime state of the Controller. Use the internal constants to ensure proper state values: - :attr:`Controller.STATE_INITIALIZING` - :attr:`Controller.STATE_ACTIVE` - :attr:`Controller.STATE_IDLE` - :attr:`Controller.STATE_SLEEPING`...	[ "def", "set_state", "(", "self", ",", "state", ")", ":", "if", "state", "==", "self", ".", "_state", ":", "return", "elif", "state", "not", "in", "self", ".", "_STATES", ".", "keys", "(", ")", ":", "raise", "ValueError", "(", "'Invalid state {}'", ".",...	41.981481	21.111111
def check_args(state, name, missing_msg=None): """Check whether a function argument is specified. This function can follow ``check_function()`` in an SCT chain and verifies whether an argument is specified. If you want to go on and check whether the argument was correctly specified, you can can continue ch...	[ "def", "check_args", "(", "state", ",", "name", ",", "missing_msg", "=", "None", ")", ":", "if", "missing_msg", "is", "None", ":", "missing_msg", "=", "\"Did you specify the {{part}}?\"", "if", "name", "in", "[", "\"args\"", ",", "\"*kwargs\"", "]", ":", "...	40.333333	29.333333
def describe_enum_value(enum_value): """Build descriptor for Enum instance. Args: enum_value: Enum value to provide descriptor for. Returns: Initialized EnumValueDescriptor instance describing the Enum instance. """ enum_value_descriptor = EnumValueDescriptor() enum_value_descripto...	[ "def", "describe_enum_value", "(", "enum_value", ")", ":", "enum_value_descriptor", "=", "EnumValueDescriptor", "(", ")", "enum_value_descriptor", ".", "name", "=", "six", ".", "text_type", "(", "enum_value", ".", "name", ")", "enum_value_descriptor", ".", "number",...	33.307692	18.923077
def write(self, output_buffer, kmip_version=enums.KMIPVersion.KMIP_2_0): """ Write the DefaultsInformation structure encoding to the data stream. Args: output_buffer (stream): A data stream in which to encode Attributes structure data, supporting a write method. ...	[ "def", "write", "(", "self", ",", "output_buffer", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_2_0", ")", ":", "if", "kmip_version", "<", "enums", ".", "KMIPVersion", ".", "KMIP_2_0", ":", "raise", "exceptions", ".", "VersionNotSupported"...	39.04878	21.439024
def items(self): """Get an iter of VenvDirs and VenvFiles within the directory.""" contents = self.paths contents = ( BinFile(path.path) if path.is_file else BinDir(path.path) for path in contents ) return contents	[ "def", "items", "(", "self", ")", ":", "contents", "=", "self", ".", "paths", "contents", "=", "(", "BinFile", "(", "path", ".", "path", ")", "if", "path", ".", "is_file", "else", "BinDir", "(", "path", ".", "path", ")", "for", "path", "in", "conte...	33.875	17.5
def settings(self): '''Generator which returns all of the statements in all of the settings tables''' for table in self.tables: if isinstance(table, SettingTable): for statement in table.statements: yield statement	[ "def", "settings", "(", "self", ")", ":", "for", "table", "in", "self", ".", "tables", ":", "if", "isinstance", "(", "table", ",", "SettingTable", ")", ":", "for", "statement", "in", "table", ".", "statements", ":", "yield", "statement" ]	45.5	16.5
def generateIntrospectionXML(objectPath, exportedObjects): """ Generates the introspection XML for an object path or partial object path that matches exported objects. This allows for browsing the exported objects with tools such as d-feet. @rtype: C{string} """ l = [_dtd_decl] l.appen...	[ "def", "generateIntrospectionXML", "(", "objectPath", ",", "exportedObjects", ")", ":", "l", "=", "[", "_dtd_decl", "]", "l", ".", "append", "(", "'<node name=\"%s\">'", "%", "(", "objectPath", ",", ")", ")", "obj", "=", "exportedObjects", ".", "get", "(", ...	29.351351	17.891892
def delete_scan(self, scan_id): """ Delete a scan if fully finished. """ if self.get_status(scan_id) == ScanStatus.RUNNING: return False self.scans_table.pop(scan_id) if len(self.scans_table) == 0: del self.data_manager self.data_manager = None ...	[ "def", "delete_scan", "(", "self", ",", "scan_id", ")", ":", "if", "self", ".", "get_status", "(", "scan_id", ")", "==", "ScanStatus", ".", "RUNNING", ":", "return", "False", "self", ".", "scans_table", ".", "pop", "(", "scan_id", ")", "if", "len", "("...	32.4	12
async def peek(self, task_id): """ Get task without changing its state :param task_id: Task id :return: Task instance """ args = (task_id,) res = await self.conn.call(self.__funcs['peek'], args) return self._create_task(res.body)	[ "async", "def", "peek", "(", "self", ",", "task_id", ")", ":", "args", "=", "(", "task_id", ",", ")", "res", "=", "await", "self", ".", "conn", ".", "call", "(", "self", ".", "__funcs", "[", "'peek'", "]", ",", "args", ")", "return", "self", ".",...	27	13.363636
def gridfs_namespace(self, plain_src_ns): """Given a plain source namespace, return the corresponding plain target namespace if this namespace is a gridfs collection. """ namespace = self.lookup(plain_src_ns) if namespace and namespace.gridfs: return namespace.dest_na...	[ "def", "gridfs_namespace", "(", "self", ",", "plain_src_ns", ")", ":", "namespace", "=", "self", ".", "lookup", "(", "plain_src_ns", ")", "if", "namespace", "and", "namespace", ".", "gridfs", ":", "return", "namespace", ".", "dest_name", "return", "None" ]	41.875	7.125
def boost_ranks(job, isoform_expression, merged_mhc_calls, transgene_out, univ_options, rank_boost_options): """ This is the final module in the pipeline. It will call the rank boosting R script. This module corresponds to node 21 in the tree """ job.fileStore.logToMaster('Runn...	[ "def", "boost_ranks", "(", "job", ",", "isoform_expression", ",", "merged_mhc_calls", ",", "transgene_out", ",", "univ_options", ",", "rank_boost_options", ")", ":", "job", ".", "fileStore", ".", "logToMaster", "(", "'Running boost_ranks on %s'", "%", "univ_options", ...	53.216216	25.648649
def lookup_endpoint(cli): """Looks up the application endpoint from dotcloud""" url = '/applications/{0}/environment'.format(APPNAME) environ = cli.user.get(url).item port = environ['DOTCLOUD_SATELLITE_ZMQ_PORT'] host = socket.gethostbyname(environ['DOTCLOUD_SATELLITE_ZMQ_HOST']) return "tcp://{...	[ "def", "lookup_endpoint", "(", "cli", ")", ":", "url", "=", "'/applications/{0}/environment'", ".", "format", "(", "APPNAME", ")", "environ", "=", "cli", ".", "user", ".", "get", "(", "url", ")", ".", "item", "port", "=", "environ", "[", "'DOTCLOUD_SATELLI...	48.571429	11.571429
def _get_hydrated_path(field): """Return HydratedPath object for file-type field.""" # Get only file path if whole file object is given. if isinstance(field, str) and hasattr(field, 'file_name'): # field is already actually a HydratedPath object return field if isinstance(field, dict) a...	[ "def", "_get_hydrated_path", "(", "field", ")", ":", "# Get only file path if whole file object is given.", "if", "isinstance", "(", "field", ",", "str", ")", "and", "hasattr", "(", "field", ",", "'file_name'", ")", ":", "# field is already actually a HydratedPath object"...	36.785714	19.714286
def deconstruct(self): """Gets the values to pass to :see:__init__ when re-creating this object.""" name, path, args, kwargs = super( HStoreField, self).deconstruct() if self.uniqueness is not None: kwargs['uniqueness'] = self.uniqueness if self.require...	[ "def", "deconstruct", "(", "self", ")", ":", "name", ",", "path", ",", "args", ",", "kwargs", "=", "super", "(", "HStoreField", ",", "self", ")", ".", "deconstruct", "(", ")", "if", "self", ".", "uniqueness", "is", "not", "None", ":", "kwargs", "[", ...	29.214286	14.571429
def next_state(self): """This is a method that will be called when the time remaining ends. The current state can be: roasting, cooling, idle, sleeping, connecting, or unkown.""" self.active_recipe_item += 1 if self.active_recipe_item >= len(self.recipe): # we're done...	[ "def", "next_state", "(", "self", ")", ":", "self", ".", "active_recipe_item", "+=", "1", "if", "self", ".", "active_recipe_item", ">=", "len", "(", "self", ".", "recipe", ")", ":", "# we're done!", "return", "# show state step on screen", "print", "(", "\"---...	49.176471	18
def deny(cls, action, kwargs): """Deny the given action need. :param action: The action to deny. :returns: A :class:`invenio_access.models.ActionNeedMixin` instance. """ return cls.create(action, exclude=True, kwargs)	[ "def", "deny", "(", "cls", ",", "action", ",", "", "", "kwargs", ")", ":", "return", "cls", ".", "create", "(", "action", ",", "exclude", "=", "True", ",", "", "", "kwargs", ")" ]	36.571429	14.714286
def generate_private_key(key_type): """ Generate a random private key using sensible parameters. :param str key_type: The type of key to generate. One of: ``rsa``. """ if key_type == u'rsa': return rsa.generate_private_key( public_exponent=65537, key_size=2048, backend=default_b...	[ "def", "generate_private_key", "(", "key_type", ")", ":", "if", "key_type", "==", "u'rsa'", ":", "return", "rsa", ".", "generate_private_key", "(", "public_exponent", "=", "65537", ",", "key_size", "=", "2048", ",", "backend", "=", "default_backend", "(", ")",...	35.1	15.5
def gramm_to_promille(gramm, age, weight, height, sex): """Return the blood alcohol content (per mill) for a person with the given body stats and amount of alcohol (in gramm) in blood """ bw = calculate_bw(age, weight, height, sex) return (gramm * W) / (PB * bw)	[ "def", "gramm_to_promille", "(", "gramm", ",", "age", ",", "weight", ",", "height", ",", "sex", ")", ":", "bw", "=", "calculate_bw", "(", "age", ",", "weight", ",", "height", ",", "sex", ")", "return", "(", "gramm", "*", "W", ")", "/", "(", "PB", ...	45	8.5
def _form_datetimes(days, msecs): """Calculate seconds since EPOCH from days and milliseconds for each of IASI scan.""" all_datetimes = [] for i in range(days.size): day = int(days[i]) msec = msecs[i] scanline_datetimes = [] for j in range(int(VALUES_PER_SCAN_LINE / 4)): ...	[ "def", "_form_datetimes", "(", "days", ",", "msecs", ")", ":", "all_datetimes", "=", "[", "]", "for", "i", "in", "range", "(", "days", ".", "size", ")", ":", "day", "=", "int", "(", "days", "[", "i", "]", ")", "msec", "=", "msecs", "[", "i", "]...	39	16.5625
def get_default_handler(self, **kw): """Return the default logging handler based on the local environment. :type kw: dict :param kw: keyword args passed to handler constructor :rtype: :class:`logging.Handler` :returns: The default log handler based on the environment ""...	[ "def", "get_default_handler", "(", "self", ",", "", "", "kw", ")", ":", "gke_cluster_name", "=", "retrieve_metadata_server", "(", "_GKE_CLUSTER_NAME", ")", "if", "(", "_APPENGINE_FLEXIBLE_ENV_VM", "in", "os", ".", "environ", "or", "_APPENGINE_INSTANCE_ID", "in", ...	35.35	17.65
def dateint_range(first_dateint, last_dateint): """Returns all dateints in the given dateint range. Arguments --------- first_dateint : int An integer object decipting a specific calendaric day; e.g. 20161225. last_dateint : int An integer object decipting a specific calendaric day;...	[ "def", "dateint_range", "(", "first_dateint", ",", "last_dateint", ")", ":", "first_datetime", "=", "dateint_to_datetime", "(", "first_dateint", ")", "last_datetime", "=", "dateint_to_datetime", "(", "last_dateint", ")", "delta", "=", "last_datetime", "-", "first_date...	34.823529	18.941176
def sample_from_discretized_mix_logistic(pred, seed=None): """Sampling from a discretized mixture of logistics. Args: pred: A [batch, height, width, num_mixtures*10] tensor of floats comprising one unconstrained mixture probability, three means (one per channel), three standard deviations (one per ...	[ "def", "sample_from_discretized_mix_logistic", "(", "pred", ",", "seed", "=", "None", ")", ":", "logits", ",", "locs", ",", "log_scales", ",", "coeffs", "=", "split_to_discretized_mix_logistic_params", "(", "pred", ")", "# Sample mixture indicator given logits using the g...	36.234043	20.255319
def process_all_json_files(build_dir): """Return a list of pages to index""" html_files = [] for root, _, files in os.walk(build_dir): for filename in fnmatch.filter(files, '*.fjson'): if filename in ['search.fjson', 'genindex.fjson', 'py-modindex.fjson']: ...	[ "def", "process_all_json_files", "(", "build_dir", ")", ":", "html_files", "=", "[", "]", "for", "root", ",", "_", ",", "files", "in", "os", ".", "walk", "(", "build_dir", ")", ":", "for", "filename", "in", "fnmatch", ".", "filter", "(", "files", ",", ...	35.315789	13.894737
def parse(cls, fptr, offset, length): """Parse component definition box. Parameters ---------- fptr : file Open file object. offset : int Start position of box in bytes. length : int Length of the box in bytes. Returns ...	[ "def", "parse", "(", "cls", ",", "fptr", ",", "offset", ",", "length", ")", ":", "num_bytes", "=", "offset", "+", "length", "-", "fptr", ".", "tell", "(", ")", "read_buffer", "=", "fptr", ".", "read", "(", "num_bytes", ")", "# Read the number of componen...	32.212121	16.181818
def format(self, subtitles): """Turn a string containing the subs xml document into the formatted subtitle string @param str\|crunchyroll.models.StyledSubtitle sub_xml_text @return str """ logger.debug('Formatting subtitles (id=%s) with %s', subtitles.id, self...	[ "def", "format", "(", "self", ",", "subtitles", ")", ":", "logger", ".", "debug", "(", "'Formatting subtitles (id=%s) with %s'", ",", "subtitles", ".", "id", ",", "self", ".", "__class__", ".", "__name__", ")", "return", "self", ".", "_format", "(", "subtitl...	38.6	15.9
def ensure_topic(self): """Verify the pub/sub topic exists. Returns the topic qualified name. """ client = self.session.client('pubsub', 'v1', 'projects.topics') topic = self.get_topic_param() try: client.execute_command('get', {'topic': topic}) excep...	[ "def", "ensure_topic", "(", "self", ")", ":", "client", "=", "self", ".", "session", ".", "client", "(", "'pubsub'", ",", "'v1'", ",", "'projects.topics'", ")", "topic", "=", "self", ".", "get_topic_param", "(", ")", "try", ":", "client", ".", "execute_c...	33.157895	18.526316
def dcmanonym( dcmpth, displayonly=False, patient='anonymised', physician='anonymised', dob='19800101', verbose=True): ''' Anonymise DICOM file(s) Arguments: > dcmpth: it can be passed as a single DICOM file, or a folder containi...	[ "def", "dcmanonym", "(", "dcmpth", ",", "displayonly", "=", "False", ",", "patient", "=", "'anonymised'", ",", "physician", "=", "'anonymised'", ",", "dob", "=", "'19800101'", ",", "verbose", "=", "True", ")", ":", "#> check if a single DICOM file", "if", "isi...	35.242647	22.036765
def healthy(self): """Return 200 is healthy, else 500. Override is_healthy() to change the health check. """ try: if self.is_healthy(): return "OK", 200 else: return "FAIL", 500 except Exception as e: self.app...	[ "def", "healthy", "(", "self", ")", ":", "try", ":", "if", "self", ".", "is_healthy", "(", ")", ":", "return", "\"OK\"", ",", "200", "else", ":", "return", "\"FAIL\"", ",", "500", "except", "Exception", "as", "e", ":", "self", ".", "app", ".", "log...	23.8	16.733333
def install_brew(target_path): """ Install brew to the target path """ if not os.path.exists(target_path): try: os.makedirs(target_path) except OSError: logger.warn("Unable to create directory %s for brew." % target_path) logger.warn("Skipping...") ...	[ "def", "install_brew", "(", "target_path", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "target_path", ")", ":", "try", ":", "os", ".", "makedirs", "(", "target_path", ")", "except", "OSError", ":", "logger", ".", "warn", "(", "\"Unabl...	39	15.5
def should_retry_on_error(self, error): """rules for retry :param error: ProtocolException that returns from Server """ if self.is_streaming_request: # not retry for streaming request return False retry_flag = self.headers.get('re', retry.DE...	[ "def", "should_retry_on_error", "(", "self", ",", "error", ")", ":", "if", "self", ".", "is_streaming_request", ":", "# not retry for streaming request", "return", "False", "retry_flag", "=", "self", ".", "headers", ".", "get", "(", "'re'", ",", "retry", ".", ...	31.59375	17.375
def process_download_path(self): """ Processes the download path. It checks if the path exists and the scraper has write permissions. """ if os.path.exists(self.download_path): if not os.access(self.download_path, os.W_OK): raise DirectoryAcce...	[ "def", "process_download_path", "(", "self", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "download_path", ")", ":", "if", "not", "os", ".", "access", "(", "self", ".", "download_path", ",", "os", ".", "W_OK", ")", ":", "raise"...	35.785714	13.285714
def getSegmentKeys(self, segment): """ Get the different keys for 1 defined segment :param segment: Segment to find. Ex : PV1, PID """ return list(filter(lambda x: x.startswith(segment), self.getAliasedKeys()))	[ "def", "getSegmentKeys", "(", "self", ",", "segment", ")", ":", "return", "list", "(", "filter", "(", "lambda", "x", ":", "x", ".", "startswith", "(", "segment", ")", ",", "self", ".", "getAliasedKeys", "(", ")", ")", ")" ]	42.166667	13.833333
def _add_scheme(): """ urllib.parse doesn't support the mongodb scheme, but it's easy to make it so. """ lists = [ urllib.parse.uses_relative, urllib.parse.uses_netloc, urllib.parse.uses_query, ] for l in lists: l.append('mongodb')	[ "def", "_add_scheme", "(", ")", ":", "lists", "=", "[", "urllib", ".", "parse", ".", "uses_relative", ",", "urllib", ".", "parse", ".", "uses_netloc", ",", "urllib", ".", "parse", ".", "uses_query", ",", "]", "for", "l", "in", "lists", ":", "l", ".",...	23.333333	15.5
def use(self, plugin, arguments={}): """Add plugin to use during compilation. plugin: Plugin to include. arguments: Dictionary of arguments to pass to the import. """ self.plugins[plugin] = dict(arguments) return self.plugins	[ "def", "use", "(", "self", ",", "plugin", ",", "arguments", "=", "{", "}", ")", ":", "self", ".", "plugins", "[", "plugin", "]", "=", "dict", "(", "arguments", ")", "return", "self", ".", "plugins" ]	30.375	11.75
def execute(self): """ Invoke the redispy pipeline.execute() method and take all the values returned in sequential order of commands and map them to the Future objects we returned when each command was queued inside the pipeline. Also invoke all the callback functions que...	[ "def", "execute", "(", "self", ")", ":", "stack", "=", "self", ".", "_stack", "callbacks", "=", "self", ".", "_callbacks", "promises", "=", "[", "]", "if", "stack", ":", "def", "process", "(", ")", ":", "\"\"\"\n take all the commands and pass t...	35.83871	19.064516
def old(self): """Assess to the state value(s) at beginning of the time step, which has been processed most recently. When using HydPy in the normal manner. But it can be helpful for demonstration and debugging purposes. """ value = getattr(self.fastaccess_old, self.n...	[ "def", "old", "(", "self", ")", ":", "value", "=", "getattr", "(", "self", ".", "fastaccess_old", ",", "self", ".", "name", ",", "None", ")", "if", "value", "is", "None", ":", "raise", "RuntimeError", "(", "'No value/values of sequence %s has/have '", "'not ...	39.75	15.6875
def get_profile_pic_from_id(self, id): """ Get full profile pic from an id The ID must be on your contact book to successfully get their profile picture. :param id: ID :type id: str """ profile_pic = self.wapi_functions.getProfilePicFromId(id) if ...	[ "def", "get_profile_pic_from_id", "(", "self", ",", "id", ")", ":", "profile_pic", "=", "self", ".", "wapi_functions", ".", "getProfilePicFromId", "(", "id", ")", "if", "profile_pic", ":", "return", "b64decode", "(", "profile_pic", ")", "else", ":", "return", ...	28.571429	12.857143
def create_tags(filesystemid, tags, keyid=None, key=None, profile=None, region=None, **kwargs): ''' Creates or overwrites tags associated with a file system. Each tag is a key-value pair. If a tag key specified i...	[ "def", "create_tags", "(", "filesystemid", ",", "tags", ",", "keyid", "=", "None", ",", "key", "=", "None", ",", "profile", "=", "None", ",", "region", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "_get_conn", "(", "key", "=", "ke...	27.909091	24.515152
def create(self, item, **kwargs): """ Creates a new item. You pass in an item containing initial values. Any attribute names defined in ``prototype`` that are missing from the item will be added using the default value defined in ``prototype``. """ response = self._new_r...	[ "def", "create", "(", "self", ",", "item", ",", "", "", "kwargs", ")", ":", "response", "=", "self", ".", "_new_response", "(", ")", "if", "self", ".", "_prototype_handler", ".", "check", "(", "item", ",", "'create'", ",", "response", ")", ":", "se...	43.125	13.875
def add_text(self, text, position=None, font_size=50, color=None, font=None, shadow=False, name=None, loc=None): """ Adds text to plot object in the top left corner by default Parameters ---------- text : str The text to add the the rendering ...	[ "def", "add_text", "(", "self", ",", "text", ",", "position", "=", "None", ",", "font_size", "=", "50", ",", "color", "=", "None", ",", "font", "=", "None", ",", "shadow", "=", "False", ",", "name", "=", "None", ",", "loc", "=", "None", ")", ":",...	37.810345	19.810345
def rouge(hypotheses, references): """Calculates average rouge scores for a list of hypotheses and references""" # Filter out hyps that are of 0 length # hyps_and_refs = zip(hypotheses, references) # hyps_and_refs = [_ for _ in hyps_and_refs if len(_[0]) > 0] # hypotheses, references = zip(*hyp...	[ "def", "rouge", "(", "hypotheses", ",", "references", ")", ":", "# Filter out hyps that are of 0 length", "# hyps_and_refs = zip(hypotheses, references)", "# hyps_and_refs = [_ for _ in hyps_and_refs if len(_[0]) > 0]", "# hypotheses, references = zip(*hyps_and_refs)", "# Calculate ROUGE-1 F...	34.153846	18.461538
def changes(self): """:class:`AuditLogChanges`: The list of changes this entry has.""" obj = AuditLogChanges(self, self._changes) del self._changes return obj	[ "def", "changes", "(", "self", ")", ":", "obj", "=", "AuditLogChanges", "(", "self", ",", "self", ".", "_changes", ")", "del", "self", ".", "_changes", "return", "obj" ]	37.2	13.8

def parse_filespec(fspec, sep=':', gpat='*'): """ Parse given filespec `fspec` and return [(filetype, filepath)]. Because anyconfig.load should find correct file's type to load by the file extension, this function will not try guessing file's type if not file type is specified explicitly. :par...

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34.375

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def _round(self): """ This is the environment implementation of :meth:`BaseAnchor.round`. Subclasses may override this method. """ self.x = normalizers.normalizeRounding(self.x) self.y = normalizers.normalizeRounding(self.y)

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30.333333

12.333333

def stop_capture(self, adapter_number): """ Stops a packet capture. :param adapter_number: adapter number """ try: adapter = self._ethernet_adapters[adapter_number] except KeyError: raise DockerError("Adapter {adapter_number} doesn't exist on Doc...

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43.653846

34.5

def choose_best_mask(self): """This method returns the index of the "best" mask as defined by having the lowest total penalty score. The penalty rules are defined by the standard. The mask with the lowest total score should be the easiest to read by optical scanners. """ ...

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36.028986

13.376812

def add_checkpoint_file(self,filename): """ Add filename as a checkpoint file for this DAG node @param filename: checkpoint filename to add """ if filename not in self.__checkpoint_files: self.__checkpoint_files.append(filename) if not isinstance(self.job(), CondorDAGManJob): ...

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40.7

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def disconnect(self, *args, **kwargs): """ WebSocket was disconnected - leave the IRC channel. """ quit_message = "%s %s" % (settings.GNOTTY_VERSION_STRING, settings.GNOTTY_PROJECT_URL) self.client.connection.quit(quit_message) super(IRCN...

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44.5

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def _schedule_next_run(self): """ Compute the instant when this job should run next. """ if self.unit not in ('seconds', 'minutes', 'hours', 'days', 'weeks'): raise ScheduleValueError('Invalid unit') if self.latest is not None: if not (self.latest >= self...

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18.463768

def gpg_profile_put_key( blockchain_id, key_id, key_name=None, immutable=True, txid=None, key_url=None, use_key_server=True, key_server=None, proxy=None, wallet_keys=None, gpghome=None ): """ Put a local GPG key into a blockchain ID's global account. If the URL is not given, the key will be replicated to th...

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def save(self): """ Easy save(insert or update) for db models """ try: if self.exists() is False: self.db.session.add(self) # self.db.session.merge(self) self.db.session.commit() except (Exception, BaseException) as error: i...

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35.818182

9.454545

def doNew(self, WHAT={}, **params): """This function will perform the command -new.""" if hasattr(WHAT, '_modified'): for key in WHAT: if key not in ['RECORDID','MODID']: if WHAT.__new2old__.has_key(key): self._addDBParam(WHAT.__new2old__[key].encode('utf-8'), WHAT[key]) else: self._ad...

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29.461538

19.923077

def enable_counter(self, base=None, database='counter', collection='counters'): """Register the builtin counter model, return the registered Counter class and the corresponding ``CounterMixin`` class. The ``CounterMixin`` automatically increases and decreases the counter ...

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40.584906

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def check_shape(meth): """ Decorator for larray magic methods, to ensure that the operand has the same shape as the array. """ @wraps(meth) def wrapped_meth(self, val): if isinstance(val, (larray, numpy.ndarray)): if val.shape != self._shape: raise ValueError(...

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35.666667

15.333333

def check_docstring_first(src, filename='<unknown>'): # type: (bytes, str) -> int """Returns nonzero if the source has what looks like a docstring that is not at the beginning of the source. A string will be considered a docstring if it is a STRING token with a col offset of 0. """ found_do...

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36.378378

17.162162

def initiate(self, transport, to = None): """Initiate an XMPP connection over the `transport`. :Parameters: - `transport`: an XMPP transport instance - `to`: peer name (defaults to own jid domain part) """ if to is None: to = JID(self.me.domain) ...

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36.1

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def tokenize(self, data): ''' Tokenize sentence. Args: [n-gram, n-gram, n-gram, ...] ''' super().tokenize(data) token_tuple_zip = self.n_gram.generate_tuple_zip(self.token, self.n) token_list = [] self.token = ["".join(list(token_tuple)) for ...

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28.333333

25.166667

def network_get_primary_address(binding): ''' Deprecated since Juju 2.3; use network_get() Retrieve the primary network address for a named binding :param binding: string. The name of a relation of extra-binding :return: string. The primary IP address for the named binding :raise: NotImplement...

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36.590909

21.863636

def equal(self, what, epsilon=None): """compares given object ``X`` with an expected ``Y`` object. It primarily assures that the compared objects are absolute equal ``==``. :param what: the expected value :param epsilon: a delta to leverage upper-bound floating point permissiveness ...

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31.166667

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def export_handle(self, directory): """Get a filehandle for exporting""" filename = getattr(self, 'filename') dest_file = "%s/%s" % (directory, filename) dest_dir = os.path.dirname(dest_file) if not os.path.isdir(dest_dir): os.mkdir(dest_dir, 0o700) return op...

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36.666667

8.222222

def encodefuns(): """Returns a dictionary mapping ICC type signature sig to encoding function. Each function returns a string comprising the content of the encoded value. To form the full value, the type sig and the 4 zero bytes should be prefixed (8 bytes). """ def desc(ascii): """Re...

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33.038462

19.807692

def _scene(self): """ A cached version of the pyembree scene. """ return _EmbreeWrap(vertices=self.mesh.vertices, faces=self.mesh.faces, scale=self._scale)

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33.571429

8.428571

def find_peaks(sig): """ Find hard peaks and soft peaks in a signal, defined as follows: - Hard peak: a peak that is either /\ or \/ - Soft peak: a peak that is either /-*\ or \-*/ In this case we define the middle as the peak Parameters ---------- sig : np array The 1d signa...

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25.94

20.5

def filter_for_filesize(result, size=None): """ Will test the filepath result and test if its size is at least self.filesize :param result: a list of dicts returned by Snakebite ls :param size: the file size in MB a file should be at least to trigger True :return: (bool) dependi...

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41.944444

20.166667

def create_thing(self, lid): """Create a new Thing with a local id (lid). Returns a [Thing](Thing.m.html#IoticAgent.IOT.Thing.Thing) object if successful or if the Thing already exists Raises [IOTException](./Exceptions.m.html#IoticAgent.IOT.Exceptions.IOTException) containing...

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49.409091

29.909091

def wait_for_tasks_to_complete(batch_service_client, job_ids, timeout): """Returns when all tasks in the specified job reach the Completed state. :param batch_service_client: A Batch service client. :type batch_service_client: `azure.batch.BatchServiceClient` :param str job_id: The id of the job whose ...

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44.794118

22.794118

def toArray(self): """ Returns a copy of this SparseVector as a 1-dimensional NumPy array. """ arr = np.zeros((self.size,), dtype=np.float64) arr[self.indices] = self.values return arr

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32.285714

13.428571

def deferred_emails(): """Checks for deferred email, that otherwise fill up the queue.""" status = SERVER_STATUS['OK'] count = Message.objects.deferred().count() if DEFERRED_WARNING_THRESHOLD <= count < DEFERRED_DANGER_THRESHOLD: status = SERVER_STATUS['WARNING'] if count >= DEFERRED_DANGER...

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34.266667

17.6

def addcomponent(self, data): """ A method to create a component in Bugzilla. Takes a dict, with the following elements: product: The product to create the component in component: The name of the component to create description: A one sentence summary of the component ...

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47.45

18.15

def model_instance_diff(old, new): """ Calculates the differences between two model instances. One of the instances may be ``None`` (i.e., a newly created model or deleted model). This will cause all fields with a value to have changed (from ``None``). :param old: The old state of the model instance. ...

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38.728814

23.779661

def unique(seq, key=None, return_as=None): """Unique the seq and keep the order. Instead of the slow way: `lambda seq: (x for index, x in enumerate(seq) if seq.index(x)==index)` :param seq: raw sequence. :param return_as: generator for default, or list / set / str... >>> from torequests.u...

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29.0625

20.3125

def add_scope(self, scope_type, scope_name, scope_start, is_method=False): """we identified a scope and add it to positions.""" if self._curr is not None: self._curr['end'] = scope_start - 1 # close last scope self._curr = { 'type': scope_type, 'name': scope_name, ...

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39.125

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def extract_header_comment_key_value_tuples_from_file(file_descriptor): """ Extracts tuples representing comments and localization entries from strings file. Args: file_descriptor (file): The file to read the tuples from Returns: list : List of tuples representing the headers and localizat...

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def dostilt(s, bed_az, bed_dip): """ Rotates "s" tensor to stratigraphic coordinates Parameters __________ s : [x11,x22,x33,x12,x23,x13] - the six tensor elements bed_az : bedding dip direction bed_dip : bedding dip Return s_rot : [x11,x22,x33,x12,x23,x13] - after rotation ""...

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def get_queries_batch(self, query_get_request, project): """GetQueriesBatch. [Preview API] Gets a list of queries by ids (Maximum 1000) :param :class:`<QueryBatchGetRequest> <azure.devops.v5_1.work_item_tracking.models.QueryBatchGetRequest>` query_get_request: :param str project: Project...

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57.647059

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def main(args=sys.argv): """ Main command-line invocation. """ try: opts, args = getopt.gnu_getopt(args[1:], 'p:o:jdt', [ 'jspath=', 'output=', 'private', 'json', 'dependencies', 'test', 'help']) opts = dict(opts) except getopt.GetoptError: usage() ...

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30.277778

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def main(): """ NAME replace_AC_specimens.py DESCRIPTION finds anisotropy corrected data and replaces that specimen with it. puts in pmag_specimen format file SYNTAX replace_AC_specimens.py [command line options] OPTIONS -h prints help mes...

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35.32967

16.384615

def process_line( line, # type: Text filename, # type: str line_number, # type: int finder=None, # type: Optional[PackageFinder] comes_from=None, # type: Optional[str] options=None, # type: Optional[optparse.Values] session=None, # type: Optional[PipSession] wheel_cache=None, # t...

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40.456

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def dehtml(text): '''Remove HTML tag in input text and format the texts accordingly. ''' # added by BoPeng to handle html output from kernel # # Do not understand why, but I cannot define the class outside of the # function. try: # python 2 from HTMLParser import HTMLParser ...

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30.62069

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def _load(self, config): """ Load this config from an existing config Parameters: ----------- config : filename, config object, or dict to load Returns: -------- params : configuration parameters """ if isstring(config): self.filenam...

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28.692308

14

def header_length(header): """Calculates the ciphertext message header length, given a complete header. :param header: Complete message header object :type header: aws_encryption_sdk.structures.MessageHeader :rtype: int """ # Because encrypted data key lengths may not be knowable until the ciph...

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47.153846

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def validate_metadata_token(self, claims, endpoint): """ If the token endpoint is used in the grant type, the value of this parameter MUST be the same as the value of the "grant_type" parameter passed to the token endpoint defined in the grant type definition. """ ...

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def smart_str(s, encoding='utf-8', errors='strict'): """ Returns a bytestring version of 's', encoded as specified in 'encoding'. If strings_only is True, don't convert (some) non-string-like objects. from django """ if not isinstance(s, basestring): try: return str(s) ...

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37.416667

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def http_proxy(self): """Set ivy to use an http proxy. Expects a string of the form http://<host>:<port> """ if os.getenv('HTTP_PROXY'): return os.getenv('HTTP_PROXY') if os.getenv('http_proxy'): return os.getenv('http_proxy') return self.get_options().http_proxy

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29.1

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def xml(self, operator='set', indent = ""): """Serialize the metadata field to XML""" xml = indent + "<meta id=\"" + self.key + "\"" if operator != 'set': xml += " operator=\"" + operator + "\"" if not self.value: xml += " />" else: xml += ">" ...

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35.4

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def _to_add_with_category(self, catid): ''' Used for info2. :param catid: the uid of category ''' catinfo = MCategory.get_by_uid(catid) kwd = { 'uid': self._gen_uid(), 'userid': self.userinfo.user_name if self.userinfo else '', 'gcat0'...

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32.222222

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def until(coro, coro_test, assert_coro=None, *args, **kw): """ Repeatedly call `coro` coroutine function until `coro_test` returns `True`. This function is the inverse of `paco.whilst()`. This function is a coroutine. Arguments: coro (coroutinefunction): coroutine function to execute. ...

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26.604651

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def init_app(self, app): """ Register this extension with the flask app :param app: A flask application """ # Save this so we can use it later in the extension if not hasattr(app, 'extensions'): # pragma: no cover app.extensions = {} app.extensions[...

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36

16.777778

def _new_connection_file(self): """ Generate a new connection file Taken from jupyter_client/console_app.py Licensed under the BSD license """ # Check if jupyter_runtime_dir exists (Spyder addition) if not osp.isdir(jupyter_runtime_dir()): tr...

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35.421053

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def get_all_migrations(path, databases=None): """ Returns a dictionary of database => [migrations] representing all migrations contained in ``path``. """ # database: [(number, full_path)] possible_migrations = defaultdict(list) try: in_directory = sorted(get_file_list(path)) ...

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33.581395

17.069767

def vowelinstem(self): """vowelinstem() is TRUE <=> k0,...j contains a vowel""" for i in range(self.k0, self.j + 1): if not self.cons(i): return 1 return 0

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34.5

11.333333

def _get_snpeff_transcript(self, transcript_info): """Create a transcript based on the snpeff annotation Args: transcript_info (dict): A dict with snpeff info Returns: transcript (puzzle.models.Transcript): A Transcripts """ transcript = ...

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41.8

19.5

def create_new_project(): '''Creates a new XBMC Addon directory based on user input''' readline.parse_and_bind('tab: complete') print \ ''' xbmcswift2 - A micro-framework for creating XBMC plugins. xbmc@jonathanbeluch.com -- ''' print 'I\'m going to ask you a few questions to get this proje...

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29.8

24.018182

def consume_arguments(self, argument_list): """ Takes arguments from a list while there are parameters that can accept them """ while True: argument_count = len(argument_list) for parameter in self.values(): argument_list = parameter.consume_argume...

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41.9

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def print_help(self): """Prints usage of all registered commands, collapsing aliases into one record """ seen_aliases = set() print('-'*80) for cmd in sorted(self.cmds): if cmd not in self.builtin_cmds: if cmd not in seen_aliases: ...

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41.833333

11.888889

def get_external_store(self, project_name, store_name): """ get the logstore meta info Unsuccessful opertaion will cause an LogException. :type project_name: string :param project_name: the Project name :type store_name: string :param store_name: the logstore n...

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31.08

18.64

def truncate_table(self, table): """ Responsys.truncateTable call Accepts: InteractObject table Returns True on success """ table = table.get_soap_object(self.client) return self.call('truncateTable', table)

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26

14.7

def get_location(query, format, api_key): """Get geographic data of a lab in a coherent way for all labs.""" # Play nice with the API... sleep(1) geolocator = OpenCage(api_key=api_key, timeout=10) # Variables for storing the data data = {"city": None, "address_1": None, ...

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37.27957

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def top10(rest): """ Return the top n (default 10) highest entities by Karmic value. Use negative numbers for the bottom N. """ if rest: topn = int(rest) else: topn = 10 selection = Karma.store.list(topn) res = ' '.join('(%s: %s)' % (', '.join(n), k) for n, k in selection) return res

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23.833333

19

def highlight_code(text, lexer_name='python', **kwargs): """ Highlights a block of text using ANSI tags based on language syntax. Args: text (str): plain text to highlight lexer_name (str): name of language **kwargs: passed to pygments.lexers.get_lexer_by_name Returns: ...

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31.8

20.8

def set_state(self, state): """Set the runtime state of the Controller. Use the internal constants to ensure proper state values: - :attr:`Controller.STATE_INITIALIZING` - :attr:`Controller.STATE_ACTIVE` - :attr:`Controller.STATE_IDLE` - :attr:`Controller.STATE_SLEEPING`...

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41.981481

21.111111

def check_args(state, name, missing_msg=None): """Check whether a function argument is specified. This function can follow ``check_function()`` in an SCT chain and verifies whether an argument is specified. If you want to go on and check whether the argument was correctly specified, you can can continue ch...

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40.333333

29.333333

def describe_enum_value(enum_value): """Build descriptor for Enum instance. Args: enum_value: Enum value to provide descriptor for. Returns: Initialized EnumValueDescriptor instance describing the Enum instance. """ enum_value_descriptor = EnumValueDescriptor() enum_value_descripto...

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33.307692

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def write(self, output_buffer, kmip_version=enums.KMIPVersion.KMIP_2_0): """ Write the DefaultsInformation structure encoding to the data stream. Args: output_buffer (stream): A data stream in which to encode Attributes structure data, supporting a write method. ...

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39.04878

21.439024

def items(self): """Get an iter of VenvDirs and VenvFiles within the directory.""" contents = self.paths contents = ( BinFile(path.path) if path.is_file else BinDir(path.path) for path in contents ) return contents

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33.875

17.5

def settings(self): '''Generator which returns all of the statements in all of the settings tables''' for table in self.tables: if isinstance(table, SettingTable): for statement in table.statements: yield statement

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45.5

16.5

def generateIntrospectionXML(objectPath, exportedObjects): """ Generates the introspection XML for an object path or partial object path that matches exported objects. This allows for browsing the exported objects with tools such as d-feet. @rtype: C{string} """ l = [_dtd_decl] l.appen...

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29.351351

17.891892

def delete_scan(self, scan_id): """ Delete a scan if fully finished. """ if self.get_status(scan_id) == ScanStatus.RUNNING: return False self.scans_table.pop(scan_id) if len(self.scans_table) == 0: del self.data_manager self.data_manager = None ...

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32.4

12

async def peek(self, task_id): """ Get task without changing its state :param task_id: Task id :return: Task instance """ args = (task_id,) res = await self.conn.call(self.__funcs['peek'], args) return self._create_task(res.body)

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27

13.363636

def gridfs_namespace(self, plain_src_ns): """Given a plain source namespace, return the corresponding plain target namespace if this namespace is a gridfs collection. """ namespace = self.lookup(plain_src_ns) if namespace and namespace.gridfs: return namespace.dest_na...

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41.875

7.125

def boost_ranks(job, isoform_expression, merged_mhc_calls, transgene_out, univ_options, rank_boost_options): """ This is the final module in the pipeline. It will call the rank boosting R script. This module corresponds to node 21 in the tree """ job.fileStore.logToMaster('Runn...

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53.216216

25.648649

def lookup_endpoint(cli): """Looks up the application endpoint from dotcloud""" url = '/applications/{0}/environment'.format(APPNAME) environ = cli.user.get(url).item port = environ['DOTCLOUD_SATELLITE_ZMQ_PORT'] host = socket.gethostbyname(environ['DOTCLOUD_SATELLITE_ZMQ_HOST']) return "tcp://{...

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48.571429

11.571429

def _get_hydrated_path(field): """Return HydratedPath object for file-type field.""" # Get only file path if whole file object is given. if isinstance(field, str) and hasattr(field, 'file_name'): # field is already actually a HydratedPath object return field if isinstance(field, dict) a...

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36.785714

19.714286

def deconstruct(self): """Gets the values to pass to :see:__init__ when re-creating this object.""" name, path, args, kwargs = super( HStoreField, self).deconstruct() if self.uniqueness is not None: kwargs['uniqueness'] = self.uniqueness if self.require...

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29.214286

14.571429

def next_state(self): """This is a method that will be called when the time remaining ends. The current state can be: roasting, cooling, idle, sleeping, connecting, or unkown.""" self.active_recipe_item += 1 if self.active_recipe_item >= len(self.recipe): # we're done...

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49.176471

18

def deny(cls, action, **kwargs): """Deny the given action need. :param action: The action to deny. :returns: A :class:`invenio_access.models.ActionNeedMixin` instance. """ return cls.create(action, exclude=True, **kwargs)

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36.571429

14.714286

def generate_private_key(key_type): """ Generate a random private key using sensible parameters. :param str key_type: The type of key to generate. One of: ``rsa``. """ if key_type == u'rsa': return rsa.generate_private_key( public_exponent=65537, key_size=2048, backend=default_b...

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35.1

15.5

def gramm_to_promille(gramm, age, weight, height, sex): """Return the blood alcohol content (per mill) for a person with the given body stats and amount of alcohol (in gramm) in blood """ bw = calculate_bw(age, weight, height, sex) return (gramm * W) / (PB * bw)

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45

8.5

def _form_datetimes(days, msecs): """Calculate seconds since EPOCH from days and milliseconds for each of IASI scan.""" all_datetimes = [] for i in range(days.size): day = int(days[i]) msec = msecs[i] scanline_datetimes = [] for j in range(int(VALUES_PER_SCAN_LINE / 4)): ...

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39

16.5625

def get_default_handler(self, **kw): """Return the default logging handler based on the local environment. :type kw: dict :param kw: keyword args passed to handler constructor :rtype: :class:`logging.Handler` :returns: The default log handler based on the environment ""...

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35.35

17.65

def dateint_range(first_dateint, last_dateint): """Returns all dateints in the given dateint range. Arguments --------- first_dateint : int An integer object decipting a specific calendaric day; e.g. 20161225. last_dateint : int An integer object decipting a specific calendaric day;...

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34.823529

18.941176

def sample_from_discretized_mix_logistic(pred, seed=None): """Sampling from a discretized mixture of logistics. Args: pred: A [batch, height, width, num_mixtures*10] tensor of floats comprising one unconstrained mixture probability, three means (one per channel), three standard deviations (one per ...

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36.234043

20.255319

def process_all_json_files(build_dir): """Return a list of pages to index""" html_files = [] for root, _, files in os.walk(build_dir): for filename in fnmatch.filter(files, '*.fjson'): if filename in ['search.fjson', 'genindex.fjson', 'py-modindex.fjson']: ...

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35.315789

13.894737

def parse(cls, fptr, offset, length): """Parse component definition box. Parameters ---------- fptr : file Open file object. offset : int Start position of box in bytes. length : int Length of the box in bytes. Returns ...

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32.212121

16.181818

def format(self, subtitles): """Turn a string containing the subs xml document into the formatted subtitle string @param str|crunchyroll.models.StyledSubtitle sub_xml_text @return str """ logger.debug('Formatting subtitles (id=%s) with %s', subtitles.id, self...

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38.6

15.9

def ensure_topic(self): """Verify the pub/sub topic exists. Returns the topic qualified name. """ client = self.session.client('pubsub', 'v1', 'projects.topics') topic = self.get_topic_param() try: client.execute_command('get', {'topic': topic}) excep...

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33.157895

18.526316

def dcmanonym( dcmpth, displayonly=False, patient='anonymised', physician='anonymised', dob='19800101', verbose=True): ''' Anonymise DICOM file(s) Arguments: > dcmpth: it can be passed as a single DICOM file, or a folder containi...

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35.242647

22.036765

def healthy(self): """Return 200 is healthy, else 500. Override is_healthy() to change the health check. """ try: if self.is_healthy(): return "OK", 200 else: return "FAIL", 500 except Exception as e: self.app...

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23.8

16.733333

def install_brew(target_path): """ Install brew to the target path """ if not os.path.exists(target_path): try: os.makedirs(target_path) except OSError: logger.warn("Unable to create directory %s for brew." % target_path) logger.warn("Skipping...") ...

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39

15.5

def should_retry_on_error(self, error): """rules for retry :param error: ProtocolException that returns from Server """ if self.is_streaming_request: # not retry for streaming request return False retry_flag = self.headers.get('re', retry.DE...

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31.59375

17.375

def process_download_path(self): """ Processes the download path. It checks if the path exists and the scraper has write permissions. """ if os.path.exists(self.download_path): if not os.access(self.download_path, os.W_OK): raise DirectoryAcce...

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35.785714

13.285714

def getSegmentKeys(self, segment): """ Get the different keys for 1 defined segment :param segment: Segment to find. Ex : PV1, PID """ return list(filter(lambda x: x.startswith(segment), self.getAliasedKeys()))

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42.166667

13.833333

def _add_scheme(): """ urllib.parse doesn't support the mongodb scheme, but it's easy to make it so. """ lists = [ urllib.parse.uses_relative, urllib.parse.uses_netloc, urllib.parse.uses_query, ] for l in lists: l.append('mongodb')

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23.333333

15.5

def use(self, plugin, arguments={}): """Add plugin to use during compilation. plugin: Plugin to include. arguments: Dictionary of arguments to pass to the import. """ self.plugins[plugin] = dict(arguments) return self.plugins

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30.375

11.75

def execute(self): """ Invoke the redispy pipeline.execute() method and take all the values returned in sequential order of commands and map them to the Future objects we returned when each command was queued inside the pipeline. Also invoke all the callback functions que...

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35.83871

19.064516

def old(self): """Assess to the state value(s) at beginning of the time step, which has been processed most recently. When using *HydPy* in the normal manner. But it can be helpful for demonstration and debugging purposes. """ value = getattr(self.fastaccess_old, self.n...

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39.75

15.6875

def get_profile_pic_from_id(self, id): """ Get full profile pic from an id The ID must be on your contact book to successfully get their profile picture. :param id: ID :type id: str """ profile_pic = self.wapi_functions.getProfilePicFromId(id) if ...

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28.571429

12.857143

def create_tags(filesystemid, tags, keyid=None, key=None, profile=None, region=None, **kwargs): ''' Creates or overwrites tags associated with a file system. Each tag is a key-value pair. If a tag key specified i...

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27.909091

24.515152

def create(self, item, **kwargs): """ Creates a new item. You pass in an item containing initial values. Any attribute names defined in ``prototype`` that are missing from the item will be added using the default value defined in ``prototype``. """ response = self._new_r...

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43.125

13.875

def add_text(self, text, position=None, font_size=50, color=None, font=None, shadow=False, name=None, loc=None): """ Adds text to plot object in the top left corner by default Parameters ---------- text : str The text to add the the rendering ...

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37.810345

19.810345

def rouge(hypotheses, references): """Calculates average rouge scores for a list of hypotheses and references""" # Filter out hyps that are of 0 length # hyps_and_refs = zip(hypotheses, references) # hyps_and_refs = [_ for _ in hyps_and_refs if len(_[0]) > 0] # hypotheses, references = zip(*hyp...

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34.153846

18.461538

def changes(self): """:class:`AuditLogChanges`: The list of changes this entry has.""" obj = AuditLogChanges(self, self._changes) del self._changes return obj

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37.2

13.8