kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def text2sentences(text, labels): ''' Splits given text at predicted positions from `labels` ''' sentence = '' for i, label in enumerate(labels): if label == '1': if sentence: yield sentence sentence = '' else: sentence += text[i] ...	[ "def", "text2sentences", "(", "text", ",", "labels", ")", ":", "sentence", "=", "''", "for", "i", ",", "label", "in", "enumerate", "(", "labels", ")", ":", "if", "label", "==", "'1'", ":", "if", "sentence", ":", "yield", "sentence", "sentence", "=", ...	24.642857	17.928571
def contraction_conical_Crane(Di1, Di2, l=None, angle=None): r'''Returns loss coefficient for a conical pipe contraction as shown in Crane TP 410M [1]_ between 0 and 180 degrees. If :math:`\theta < 45^{\circ}`: .. math:: K_2 = {0.8 \sin \frac{\theta}{2}(1 - \beta^2)} otherwise: ...	[ "def", "contraction_conical_Crane", "(", "Di1", ",", "Di2", ",", "l", "=", "None", ",", "angle", "=", "None", ")", ":", "if", "l", "is", "None", "and", "angle", "is", "None", ":", "raise", "Exception", "(", "'One of `l` or `angle` must be specified'", ")", ...	28.913043	25.115942
def run(self): """Continously scan for BLE advertisements.""" self.socket = self.bluez.hci_open_dev(self.bt_device_id) filtr = self.bluez.hci_filter_new() self.bluez.hci_filter_all_events(filtr) self.bluez.hci_filter_set_ptype(filtr, self.bluez.HCI_EVENT_PKT) self.socket...	[ "def", "run", "(", "self", ")", ":", "self", ".", "socket", "=", "self", ".", "bluez", ".", "hci_open_dev", "(", "self", ".", "bt_device_id", ")", "filtr", "=", "self", ".", "bluez", ".", "hci_filter_new", "(", ")", "self", ".", "bluez", ".", "hci_fi...	38.55	17.35
def _update_rr_ce_entry(self, rec): # type: (dr.DirectoryRecord) -> int ''' An internal method to update the Rock Ridge CE entry for the given record. Parameters: rec - The record to update the Rock Ridge CE entry for (if it exists). Returns: The number...	[ "def", "_update_rr_ce_entry", "(", "self", ",", "rec", ")", ":", "# type: (dr.DirectoryRecord) -> int", "if", "rec", ".", "rock_ridge", "is", "not", "None", "and", "rec", ".", "rock_ridge", ".", "dr_entries", ".", "ce_record", "is", "not", "None", ":", "celen"...	41.15	26.15
def image_id_from_registry(image_name): """Get the docker id from a public or private registry""" registry, repository, tag = parse(image_name) try: token = auth_token(registry, repository).get("token") # dockerhub is crazy if registry == "index.docker.io": registry = "re...	[ "def", "image_id_from_registry", "(", "image_name", ")", ":", "registry", ",", "repository", ",", "tag", "=", "parse", "(", "image_name", ")", "try", ":", "token", "=", "auth_token", "(", "registry", ",", "repository", ")", ".", "get", "(", "\"token\"", ")...	47.944444	18.888889
def _set_conf(self): """ Set configuration parameters from the Conf object into the detector object. Time values are converted to samples, and amplitude values are in mV. """ self.rr_init = 60 * self.fs / self.conf.hr_init self.rr_max = 60 * self.fs / self.conf.h...	[ "def", "_set_conf", "(", "self", ")", ":", "self", ".", "rr_init", "=", "60", "", "self", ".", "fs", "/", "self", ".", "conf", ".", "hr_init", "self", ".", "rr_max", "=", "60", "", "self", ".", "fs", "/", "self", ".", "conf", ".", "hr_min", "...	39.4	22.8
def _notify_add_at(self, index, length=1): """Notify about an AddChange at a caertain index and length.""" slice_ = self._slice_at(index, length) self._notify_add(slice_)	[ "def", "_notify_add_at", "(", "self", ",", "index", ",", "length", "=", "1", ")", ":", "slice_", "=", "self", ".", "_slice_at", "(", "index", ",", "length", ")", "self", ".", "_notify_add", "(", "slice_", ")" ]	47.75	4
def _run_configure(subcmd, args): """Runs the configuration step for the specified sub-command. """ maps = { "packages": _conf_packages } if subcmd in maps: maps[subcmd](args) else: msg.warn("'configure' sub-command {} is not supported.".format(subcmd))	[ "def", "_run_configure", "(", "subcmd", ",", "args", ")", ":", "maps", "=", "{", "\"packages\"", ":", "_conf_packages", "}", "if", "subcmd", "in", "maps", ":", "maps", "[", "subcmd", "]", "(", "args", ")", "else", ":", "msg", ".", "warn", "(", "\"'co...	29.6	17.4
def _move(self, speed=0, steering=0, seconds=None): """Move robot.""" self.drive_queue.put((speed, steering)) if seconds is not None: time.sleep(seconds) self.drive_queue.put((0, 0)) self.drive_queue.join()	[ "def", "_move", "(", "self", ",", "speed", "=", "0", ",", "steering", "=", "0", ",", "seconds", "=", "None", ")", ":", "self", ".", "drive_queue", ".", "put", "(", "(", "speed", ",", "steering", ")", ")", "if", "seconds", "is", "not", "None", ":"...	36.571429	6.428571
def from_api_repr(cls, resource): """Factory: construct a model reference given its API representation Args: resource (Dict[str, object]): Model reference representation returned from the API Returns: google.cloud.bigquery.model.ModelReference: ...	[ "def", "from_api_repr", "(", "cls", ",", "resource", ")", ":", "ref", "=", "cls", "(", ")", "ref", ".", "_proto", "=", "json_format", ".", "ParseDict", "(", "resource", ",", "types", ".", "ModelReference", "(", ")", ")", "return", "ref" ]	34.571429	19.857143
def update_pass(user_id, newpass): ''' Update the password of a user. ''' out_dic = {'success': False, 'code': '00'} entry = TabMember.update(user_pass=tools.md5(newpass)).where(TabMember.uid == user_id) entry.execute() out_dic['success'] = True return...	[ "def", "update_pass", "(", "user_id", ",", "newpass", ")", ":", "out_dic", "=", "{", "'success'", ":", "False", ",", "'code'", ":", "'00'", "}", "entry", "=", "TabMember", ".", "update", "(", "user_pass", "=", "tools", ".", "md5", "(", "newpass", ")", ...	24.307692	25.538462
def read(self): """ Read the target value Use $project aggregate operator in order to support nested objects """ result = self.get_collection().aggregate([ {'$match': {'_id': self._document_id}}, {'$project': {'_value': '$' + self._path, '_id': False}} ...	[ "def", "read", "(", "self", ")", ":", "result", "=", "self", ".", "get_collection", "(", ")", ".", "aggregate", "(", "[", "{", "'$match'", ":", "{", "'_id'", ":", "self", ".", "_document_id", "}", "}", ",", "{", "'$project'", ":", "{", "'_value'", ...	28.866667	18.333333
def _find_flats_edges(self, data, mag, direction): """ Extend flats 1 square downstream Flats on the downstream side of the flat might find a valid angle, but that doesn't mean that it's a correct angle. We have to find these and then set them equal to a flat """ ...	[ "def", "_find_flats_edges", "(", "self", ",", "data", ",", "mag", ",", "direction", ")", ":", "i12", "=", "np", ".", "arange", "(", "data", ".", "size", ")", ".", "reshape", "(", "data", ".", "shape", ")", "flat", "=", "mag", "==", "FLAT_ID_INT", "...	33.375	15.708333
def move_odict_item(odict, key, newpos): """ References: http://stackoverflow.com/questions/22663966/changing-order-of-ordered-dictionary-in-python CommandLine: python -m utool.util_dict --exec-move_odict_item Example: >>> # ENABLE_DOCTEST >>> from utool.util_dict impor...	[ "def", "move_odict_item", "(", "odict", ",", "key", ",", "newpos", ")", ":", "odict", "[", "key", "]", "=", "odict", ".", "pop", "(", "key", ")", "for", "i", ",", "otherkey", "in", "enumerate", "(", "list", "(", "odict", ".", "keys", "(", ")", ")...	33.588235	12.588235
def list_themes_user(): """List user theme files.""" themes = [os.scandir(os.path.join(CONF_DIR, "colorschemes/dark/")), os.scandir(os.path.join(CONF_DIR, "colorschemes/light/"))] return [t for t in themes if os.path.isfile(t.path)]	[ "def", "list_themes_user", "(", ")", ":", "themes", "=", "[", "", "os", ".", "scandir", "(", "os", ".", "path", ".", "join", "(", "CONF_DIR", ",", "\"colorschemes/dark/\"", ")", ")", ",", "", "os", ".", "scandir", "(", "os", ".", "path", ".", "jo...	51.2	19.6
def sum(x, weights=None): ''' sum(x) yields either a potential-sum object if x is a potential function or the sum of x if x is not. If x is not a potential-field then it must be a vector. sum(x, weights=w) uses the given weights to produce a weighted sum. ''' x = to_potential(x) if is_cons...	[ "def", "sum", "(", "x", ",", "weights", "=", "None", ")", ":", "x", "=", "to_potential", "(", "x", ")", "if", "is_const_potential", "(", "x", ")", ":", "return", "PotentialConstant", "(", "np", ".", "sum", "(", "x", ".", "c", ")", ")", "else", ":...	48.333333	30.111111
def save_output(results, output_directory="output"): """ Save report data in the given directory Args: results (OrderedDict): Parsing results output_directory: The patch to the directory to save in """ aggregate_reports = results["aggregate_reports"] forensic_reports = results[...	[ "def", "save_output", "(", "results", ",", "output_directory", "=", "\"output\"", ")", ":", "aggregate_reports", "=", "results", "[", "\"aggregate_reports\"", "]", "forensic_reports", "=", "results", "[", "\"forensic_reports\"", "]", "if", "os", ".", "path", ".", ...	38.65	20.816667
def find_and_remove(self, f: Callable): """ Removes any and all fields for which `f(field)` returns `True`. """ self._table = [fld for fld in self._table if not f(fld)]	[ "def", "find_and_remove", "(", "self", ",", "f", ":", "Callable", ")", ":", "self", ".", "_table", "=", "[", "fld", "for", "fld", "in", "self", ".", "_table", "if", "not", "f", "(", "fld", ")", "]" ]	39.2	11.2
def vrange(start, stop, step=1, dtype='f8'): """Creates a virtual column which is the equivalent of numpy.arange, but uses 0 memory""" from .column import ColumnVirtualRange return ColumnVirtualRange(start, stop, step, dtype)	[ "def", "vrange", "(", "start", ",", "stop", ",", "step", "=", "1", ",", "dtype", "=", "'f8'", ")", ":", "from", ".", "column", "import", "ColumnVirtualRange", "return", "ColumnVirtualRange", "(", "start", ",", "stop", ",", "step", ",", "dtype", ")" ]	58.5	5.25
def connectedVertices(self, index, returnIds=False): """Find all vertices connected to an input vertex specified by its index. :param bool returnIds: return vertex IDs instead of vertex coordinates. .. hint:: \|connVtx\| \|connVtx.py\|_ """ mesh = self.polydata() cellIdLis...	[ "def", "connectedVertices", "(", "self", ",", "index", ",", "returnIds", "=", "False", ")", ":", "mesh", "=", "self", ".", "polydata", "(", ")", "cellIdList", "=", "vtk", ".", "vtkIdList", "(", ")", "mesh", ".", "GetPointCells", "(", "index", ",", "cel...	31.575758	16.060606
def ind_zero_freq(self): """ Index of the first point for which the freqencies are equal or greater than zero. """ ind = np.searchsorted(self.frequencies, 0) if ind >= len(self.frequencies): raise ValueError("No positive frequencies found") return ind	[ "def", "ind_zero_freq", "(", "self", ")", ":", "ind", "=", "np", ".", "searchsorted", "(", "self", ".", "frequencies", ",", "0", ")", "if", "ind", ">=", "len", "(", "self", ".", "frequencies", ")", ":", "raise", "ValueError", "(", "\"No positive frequenc...	38	14.75
def ConvCnstrMODMaskOptions(opt=None, method='fista'): """A wrapper function that dynamically defines a class derived from the Options class associated with one of the implementations of the Convolutional Constrained MOD problem, and returns an object instantiated with the provided parameters. The wrapp...	[ "def", "ConvCnstrMODMaskOptions", "(", "opt", "=", "None", ",", "method", "=", "'fista'", ")", ":", "# Assign base class depending on method selection argument", "base", "=", "ccmodmsk_class_label_lookup", "(", "method", ")", ".", "Options", "# Nested class with dynamically...	46.8	20.4
def json(self): """Custom JSON encoder""" attributes = { 'type': self.type, 'filename': self.filename, 'line_number': self.lineno, 'hashed_secret': self.secret_hash, } if self.is_secret is not None: attributes['is_secret'] = se...	[ "def", "json", "(", "self", ")", ":", "attributes", "=", "{", "'type'", ":", "self", ".", "type", ",", "'filename'", ":", "self", ".", "filename", ",", "'line_number'", ":", "self", ".", "lineno", ",", "'hashed_secret'", ":", "self", ".", "secret_hash", ...	26.692308	15.538462
def get(self, sid): """ Constructs a InviteContext :param sid: The unique string that identifies the resource :returns: twilio.rest.chat.v2.service.channel.invite.InviteContext :rtype: twilio.rest.chat.v2.service.channel.invite.InviteContext """ return InviteCon...	[ "def", "get", "(", "self", ",", "sid", ")", ":", "return", "InviteContext", "(", "self", ".", "_version", ",", "service_sid", "=", "self", ".", "_solution", "[", "'service_sid'", "]", ",", "channel_sid", "=", "self", ".", "_solution", "[", "'channel_sid'",...	31.933333	20.2
def update_membership_memberships(self, group_id, membership_id, moderator=None, workflow_state=None): """ Update a membership. Accept a membership request, or add/remove moderator rights. """ path = {} data = {} params = {} # REQUIRED - PATH -...	[ "def", "update_membership_memberships", "(", "self", ",", "group_id", ",", "membership_id", ",", "moderator", "=", "None", ",", "workflow_state", "=", "None", ")", ":", "path", "=", "{", "}", "data", "=", "{", "}", "params", "=", "{", "}", "# REQUIRED - PA...	38.870968	23.483871
def _resolve_reference_sample(self, reference_samples=None, service_uids=None): """Returns the reference sample from reference_samples passed in that fits better with the service uid requirements. This is, the reference sample that covers most (or all) of the se...	[ "def", "_resolve_reference_sample", "(", "self", ",", "reference_samples", "=", "None", ",", "service_uids", "=", "None", ")", ":", "if", "not", "reference_samples", ":", "return", "None", ",", "list", "(", ")", "if", "not", "service_uids", ":", "# Since no se...	41.914894	18.914894
def _make_signature(self): """ Create a signature for `execute` based on the minimizers this `ChainedMinimizer` was initiated with. For the format, see the docstring of :meth:`ChainedMinimizer.execute`. :return: :class:`inspect.Signature` instance. """ # Create K...	[ "def", "_make_signature", "(", "self", ")", ":", "# Create KEYWORD_ONLY arguments with the names of the minimizers.", "name", "=", "lambda", "x", ":", "x", ".", "__class__", ".", "__name__", "count", "=", "Counter", "(", "[", "name", "(", "minimizer", ")", "for", ...	41.515152	19.757576
def ms_contrast_restore(self, viewer, event, data_x, data_y, msg=True): """An interactive way to restore the colormap contrast settings after a warp operation. """ if self.cancmap and (event.state == 'down'): self.restore_contrast(viewer, msg=msg) return True	[ "def", "ms_contrast_restore", "(", "self", ",", "viewer", ",", "event", ",", "data_x", ",", "data_y", ",", "msg", "=", "True", ")", ":", "if", "self", ".", "cancmap", "and", "(", "event", ".", "state", "==", "'down'", ")", ":", "self", ".", "restore_...	43.571429	12.714286
def path_exists(path): """ Check if file exists either remote or local. Parameters: ----------- path : path to file Returns: -------- exists : bool """ if path.startswith(("http://", "https://")): try: urlopen(path).info() return True exc...	[ "def", "path_exists", "(", "path", ")", ":", "if", "path", ".", "startswith", "(", "(", "\"http://\"", ",", "\"https://\"", ")", ")", ":", "try", ":", "urlopen", "(", "path", ")", ".", "info", "(", ")", "return", "True", "except", "HTTPError", "as", ...	25.125	17.1875
def find_lemma(self, verb): """ Returns the base form of the given inflected verb, using a rule-based approach. """ v = verb.lower() # Common prefixes: be-finden and emp-finden probably inflect like finden. if not (v.startswith("ge") and v.endswith("t")): # Probably gerund. ...	[ "def", "find_lemma", "(", "self", ",", "verb", ")", ":", "v", "=", "verb", ".", "lower", "(", ")", "# Common prefixes: be-finden and emp-finden probably inflect like finden.", "if", "not", "(", "v", ".", "startswith", "(", "\"ge\"", ")", "and", "v", ".", "ends...	48.857143	17.857143
def dependency_list(self, tkn: str) -> List[str]: """Return a list all of the grammarelts that depend on tkn :param tkn: :return: """ if tkn not in self.dependency_map: self.dependency_map[tkn] = [tkn] # Force a circular reference self.dependency_...	[ "def", "dependency_list", "(", "self", ",", "tkn", ":", "str", ")", "->", "List", "[", "str", "]", ":", "if", "tkn", "not", "in", "self", ".", "dependency_map", ":", "self", ".", "dependency_map", "[", "tkn", "]", "=", "[", "tkn", "]", "# Force a cir...	39.9	17.2
def get_third_party(self, third_party): """Return the account for the given third-party. Raise <something> if the third party doesn't belong to this bookset.""" actual_account = third_party.get_account() assert actual_account.get_bookset() == self return ThirdPartySubAccount(actual_acco...	[ "def", "get_third_party", "(", "self", ",", "third_party", ")", ":", "actual_account", "=", "third_party", ".", "get_account", "(", ")", "assert", "actual_account", ".", "get_bookset", "(", ")", "==", "self", "return", "ThirdPartySubAccount", "(", "actual_account"...	69	11.6
def NewFromJSON(data): """ Create a new Shake instance from a JSON dict. Args: data (dict): JSON dictionary representing a Shake. Returns: A Shake instance. """ s = Shake( id=data.get('id', None), name=data.get('name', Non...	[ "def", "NewFromJSON", "(", "data", ")", ":", "s", "=", "Shake", "(", "id", "=", "data", ".", "get", "(", "'id'", ",", "None", ")", ",", "name", "=", "data", ".", "get", "(", "'name'", ",", "None", ")", ",", "url", "=", "data", ".", "get", "("...	31.608696	15.695652
def authenticate(session, username, password): """ Authenticate a PasswordUser with the specified username/password. :param session: An active SQLAlchemy session :param username: The username :param password: The password :raise AuthenticationError: if an error occurred :return: a Pass...	[ "def", "authenticate", "(", "session", ",", "username", ",", "password", ")", ":", "if", "not", "username", "or", "not", "password", ":", "raise", "AuthenticationError", "(", ")", "user", "=", "session", ".", "query", "(", "PasswordUser", ")", ".", "filter...	26.615385	16.384615
def delete_entity_alias(self, alias_id, mount_point=DEFAULT_MOUNT_POINT): """Delete a entity alias. Supported methods: DELETE: /{mount_point}/entity-alias/id/{alias_id}. Produces: 204 (empty body) :param alias_id: Identifier of the entity. :type alias_id: str \| unicode ...	[ "def", "delete_entity_alias", "(", "self", ",", "alias_id", ",", "mount_point", "=", "DEFAULT_MOUNT_POINT", ")", ":", "api_path", "=", "'/v1/{mount_point}/entity-alias/id/{id}'", ".", "format", "(", "mount_point", "=", "mount_point", ",", "id", "=", "alias_id", ",",...	35.8	18.1
def get(self,identity,params=None, headers=None): """Get a single creditor bank account. Retrieves the details of an existing creditor bank account. Args: identity (string): Unique identifier, beginning with "BA". params (dict, optional): Query string parameters. ...	[ "def", "get", "(", "self", ",", "identity", ",", "params", "=", "None", ",", "headers", "=", "None", ")", ":", "path", "=", "self", ".", "_sub_url_params", "(", "'/creditor_bank_accounts/:identity'", ",", "{", "'identity'", ":", "identity", ",", "}", ")", ...	33.666667	24.095238
def L_diffuser_inner(sed_inputs=sed_dict): """Return the inner length of each diffuser in the sedimentation tank. Parameters ---------- sed_inputs : dict A dictionary of all of the constant inputs needed for sedimentation tank calculations can be found in sed.yaml Returns -------...	[ "def", "L_diffuser_inner", "(", "sed_inputs", "=", "sed_dict", ")", ":", "return", "L_diffuser_outer", "(", "sed_inputs", "[", "'tank'", "]", "[", "'W'", "]", ")", "-", "(", "2", "*", "(", "sed_inputs", "[", "'manifold'", "]", "[", "'diffuser'", "]", "["...	33.555556	21.5
def runs_done(): """Marks a release candidate as having all runs reported.""" build = g.build release_name, release_number = _get_release_params() release = ( models.Release.query .filter_by(build_id=build.id, name=release_name, number=release_number) .with_lockmode('update') ...	[ "def", "runs_done", "(", ")", ":", "build", "=", "g", ".", "build", "release_name", ",", "release_number", "=", "_get_release_params", "(", ")", "release", "=", "(", "models", ".", "Release", ".", "query", ".", "filter_by", "(", "build_id", "=", "build", ...	30.4375	22
def send_message(self, message): """ Prepare a message to send on the UDP socket. Eventually set retransmissions. :param message: the message to send """ if isinstance(message, Request): request = self._requestLayer.send_request(message) request = self._o...	[ "def", "send_message", "(", "self", ",", "message", ")", ":", "if", "isinstance", "(", "message", ",", "Request", ")", ":", "request", "=", "self", ".", "_requestLayer", ".", "send_request", "(", "message", ")", "request", "=", "self", ".", "_observeLayer"...	48.611111	17.277778
def _pad(self, text): """Pad the text.""" top_bottom = ("\n" * self._padding) + " " right_left = " " * self._padding * self.PAD_WIDTH return top_bottom + right_left + text + right_left + top_bottom	[ "def", "_pad", "(", "self", ",", "text", ")", ":", "top_bottom", "=", "(", "\"\\n\"", "", "self", ".", "_padding", ")", "+", "\" \"", "right_left", "=", "\" \"", "", "self", ".", "_padding", "*", "self", ".", "PAD_WIDTH", "return", "top_bottom", "+",...	45	15.2
def maybe_call_fn_and_grads(fn, fn_arg_list, result=None, grads=None, check_non_none_grads=True, name=None): """Calls `fn` and computes the gradient of the result wrt `args_list`...	[ "def", "maybe_call_fn_and_grads", "(", "fn", ",", "fn_arg_list", ",", "result", "=", "None", ",", "grads", "=", "None", ",", "check_non_none_grads", "=", "True", ",", "name", "=", "None", ")", ":", "with", "tf", ".", "compat", ".", "v1", ".", "name_scope...	52.75	15.208333
def _not(cls, operation): """not operation""" def _wrap(args, kwargs): return not operation(args, **kwargs) return _wrap	[ "def", "_not", "(", "cls", ",", "operation", ")", ":", "def", "_wrap", "(", "", "args", ",", "", "", "kwargs", ")", ":", "return", "not", "operation", "(", "", "args", ",", "", "", "kwargs", ")", "return", "_wrap" ]	22.285714	18.428571
def plot_eq(fignum, DIblock, s): """ plots directions on eqarea projection Parameters __________ fignum : matplotlib figure number DIblock : nested list of dec/inc pairs s : specimen name """ # make the stereonet plt.figure(num=fignum) if len(DIblock) < 1: return # pl...	[ "def", "plot_eq", "(", "fignum", ",", "DIblock", ",", "s", ")", ":", "# make the stereonet", "plt", ".", "figure", "(", "num", "=", "fignum", ")", "if", "len", "(", "DIblock", ")", "<", "1", ":", "return", "# plt.clf()", "if", "not", "isServer", ":", ...	22.166667	16.083333
def get_chunks(sequence, chunk_size): """Split sequence into chunks. :param list sequence: :param int chunk_size: """ return [ sequence[idx:idx + chunk_size] for idx in range(0, len(sequence), chunk_size) ]	[ "def", "get_chunks", "(", "sequence", ",", "chunk_size", ")", ":", "return", "[", "sequence", "[", "idx", ":", "idx", "+", "chunk_size", "]", "for", "idx", "in", "range", "(", "0", ",", "len", "(", "sequence", ")", ",", "chunk_size", ")", "]" ]	23.8	15.1
def _sample(self, position, trajectory_length, stepsize, lsteps=None): """ Runs a single sampling iteration to return a sample """ # Resampling momentum momentum = np.reshape(np.random.normal(0, 1, len(position)), position.shape) # position_m here will be the previous sa...	[ "def", "_sample", "(", "self", ",", "position", ",", "trajectory_length", ",", "stepsize", ",", "lsteps", "=", "None", ")", ":", "# Resampling momentum", "momentum", "=", "np", ".", "reshape", "(", "np", ".", "random", ".", "normal", "(", "0", ",", "1", ...	40.53125	25.40625
def _hugoniot_p(self, v): """ calculate static pressure at 300 K. :param v: unit-cell volume in A^3 :return: static pressure at t_ref (=300 K) in GPa """ rho = self._get_rho(v) params = self._set_params(self.params_hugoniot) if self.nonlinear: ...	[ "def", "_hugoniot_p", "(", "self", ",", "v", ")", ":", "rho", "=", "self", ".", "_get_rho", "(", "v", ")", "params", "=", "self", ".", "_set_params", "(", "self", ".", "params_hugoniot", ")", "if", "self", ".", "nonlinear", ":", "return", "hugoniot_p_n...	31	11.769231
def load_and_preprocess_imdb_data(n_gram=None): """Load IMDb data and augment with hashed n-gram features.""" X_train, y_train, X_test, y_test = tl.files.load_imdb_dataset(nb_words=VOCAB_SIZE) if n_gram is not None: X_train = np.array([augment_with_ngrams(x, VOCAB_SIZE, N_BUCKETS, n=n_gram) for x i...	[ "def", "load_and_preprocess_imdb_data", "(", "n_gram", "=", "None", ")", ":", "X_train", ",", "y_train", ",", "X_test", ",", "y_test", "=", "tl", ".", "files", ".", "load_imdb_dataset", "(", "nb_words", "=", "VOCAB_SIZE", ")", "if", "n_gram", "is", "not", ...	52.111111	30.222222
def get_by_uri(self, uri): '''Get a concept or collection by its uri. Returns a single concept or collection if one exists with this uri. Returns False otherwise. :param string uri: The uri to find a concept or collection for. :raises ValueError: The uri is invalid. :rt...	[ "def", "get_by_uri", "(", "self", ",", "uri", ")", ":", "if", "not", "is_uri", "(", "uri", ")", ":", "raise", "ValueError", "(", "'%s is not a valid URI.'", "%", "uri", ")", "# Check if there's a provider that's more likely to have the URI", "csuris", "=", "[", "c...	38.36	20.12
def get_links_of_type(self, s_type=''): """Return the `s_type` satellite list (eg. schedulers) If s_type is None, returns a dictionary of all satellites, else returns the dictionary of the s_type satellites The returned dict is indexed with the satellites uuid. :param s_type: ...	[ "def", "get_links_of_type", "(", "self", ",", "s_type", "=", "''", ")", ":", "satellites", "=", "{", "'arbiter'", ":", "getattr", "(", "self", ",", "'arbiters'", ",", "[", "]", ")", ",", "'scheduler'", ":", "getattr", "(", "self", ",", "'schedulers'", ...	35.545455	16.909091
def resolve(self, current_file, rel_path): """Search the filesystem.""" p = path.join(path.dirname(current_file), rel_path) if p not in self.file_dict: raise RuntimeError('No such fake file: %r' % p) return p, p	[ "def", "resolve", "(", "self", ",", "current_file", ",", "rel_path", ")", ":", "p", "=", "path", ".", "join", "(", "path", ".", "dirname", "(", "current_file", ")", ",", "rel_path", ")", "if", "p", "not", "in", "self", ".", "file_dict", ":", "raise",...	38	10.666667
def simPrepare(unit: Unit, modelCls: Optional[SimModel]=None, targetPlatform=DummyPlatform(), dumpModelIn: str=None, onAfterToRtl=None): """ Create simulation model and connect it with interfaces of original unit and decorate it with agents :param unit: interface level uni...	[ "def", "simPrepare", "(", "unit", ":", "Unit", ",", "modelCls", ":", "Optional", "[", "SimModel", "]", "=", "None", ",", "targetPlatform", "=", "DummyPlatform", "(", ")", ",", "dumpModelIn", ":", "str", "=", "None", ",", "onAfterToRtl", "=", "None", ")",...	37.828571	19.257143
def collect_variables(self, selections) -> None: """Apply method \|ChangeItem.collect_variables\| of the base class \|ChangeItem\| and also apply method \|ExchangeItem.insert_variables\| of class \|ExchangeItem\| to collect the relevant base variables handled by the devices of the given \|Selecti...	[ "def", "collect_variables", "(", "self", ",", "selections", ")", "->", "None", ":", "super", "(", ")", ".", "collect_variables", "(", "selections", ")", "self", ".", "insert_variables", "(", "self", ".", "device2base", ",", "self", ".", "basespecs", ",", "...	43.592593	18.962963
def get_info(df, group, info=['mean', 'std']): """ Aggregate mean and std with the given group. """ agg = df.groupby(group).agg(info) agg.columns = agg.columns.droplevel(0) return agg	[ "def", "get_info", "(", "df", ",", "group", ",", "info", "=", "[", "'mean'", ",", "'std'", "]", ")", ":", "agg", "=", "df", ".", "groupby", "(", "group", ")", ".", "agg", "(", "info", ")", "agg", ".", "columns", "=", "agg", ".", "columns", ".",...	28.714286	6.428571
def _default_handlers(self): """ Generate the handlers for this site """ static_path = os.path.abspath(os.path.join(os.path.dirname(__file__),"static")) urls = [ (r"/static/(.*)", cyclone.web.StaticFileHandler, {"path": static_path}), ] for p in self.pages: ...	[ "def", "_default_handlers", "(", "self", ")", ":", "static_path", "=", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "join", "(", "os", ".", "path", ".", "dirname", "(", "__file__", ")", ",", "\"static\"", ")", ")", "urls", "=", "...	38.083333	18.833333
def pubsub_pub(self, topic, payload, **kwargs): """Publish a message to a given pubsub topic Publishing will publish the given payload (string) to everyone currently subscribed to the given topic. All data (including the id of the publisher) is automatically base64 encoded when...	[ "def", "pubsub_pub", "(", "self", ",", "topic", ",", "payload", ",", "", "", "kwargs", ")", ":", "args", "=", "(", "topic", ",", "payload", ")", "return", "self", ".", "_client", ".", "request", "(", "'/pubsub/pub'", ",", "args", ",", "decoder", "=...	30.107143	20.857143
def authenticate(api_key, api_url, kwargs): """Returns a muddle instance, with API key and url set for requests.""" muddle = Muddle(kwargs) # Login. muddle.authenticate(api_key, api_url) return muddle	[ "def", "authenticate", "(", "api_key", ",", "api_url", ",", "", "", "kwargs", ")", ":", "muddle", "=", "Muddle", "(", "", "", "kwargs", ")", "# Login.", "muddle", ".", "authenticate", "(", "api_key", ",", "api_url", ")", "return", "muddle" ]	27.375	18.5
def default_job_name(self): """Slurm job name if not already specified in the `sbatch` section""" name = '' if not self.root.existing_campaign: campaign_file = osp.basename(self.root.campaign_file) campaign = osp.splitext(campaign_file)[0] name += camp...	[ "def", "default_job_name", "(", "self", ")", ":", "name", "=", "''", "if", "not", "self", ".", "root", ".", "existing_campaign", ":", "campaign_file", "=", "osp", ".", "basename", "(", "self", ".", "root", ".", "campaign_file", ")", "campaign", "=", "osp...	36.6	12
def S(Document, *fields): """Generate a MongoDB sort order list using the Django ORM style.""" result = [] for field in fields: if isinstance(field, tuple): # Unpack existing tuple. field, direction = field result.append((field, direction)) continue direction = ASCENDING if not field.starts...	[ "def", "S", "(", "Document", ",", "*", "fields", ")", ":", "result", "=", "[", "]", "for", "field", "in", "fields", ":", "if", "isinstance", "(", "field", ",", "tuple", ")", ":", "# Unpack existing tuple.", "field", ",", "direction", "=", "field", "res...	21.481481	23
def to_task(self): """Return a task object representing this async job.""" from google.appengine.api.taskqueue import Task from google.appengine.api.taskqueue import TaskRetryOptions self._increment_recursion_level() self.check_recursion_depth() url = "%s/%s" % (ASYNC_E...	[ "def", "to_task", "(", "self", ")", ":", "from", "google", ".", "appengine", ".", "api", ".", "taskqueue", "import", "Task", "from", "google", ".", "appengine", ".", "api", ".", "taskqueue", "import", "TaskRetryOptions", "self", ".", "_increment_recursion_leve...	34.478261	21.043478
def get_cdk_stacks(module_path, env_vars, context_opts): """Return list of CDK stacks.""" LOGGER.debug('Listing stacks in the CDK app prior to ' 'diff') return subprocess.check_output( generate_node_command( command='cdk', command_opts=['list'] + context_opts...	[ "def", "get_cdk_stacks", "(", "module_path", ",", "env_vars", ",", "context_opts", ")", ":", "LOGGER", ".", "debug", "(", "'Listing stacks in the CDK app prior to '", "'diff'", ")", "return", "subprocess", ".", "check_output", "(", "generate_node_command", "(", "comma...	35.363636	12.090909
def get_estimates(estimators_tuple, positions, num_workers=1): """ Estimates densities, and probabilities for paragraph positions. Parameters ---------- estimators_tuple : (float, KernelDensity, KernelDensity) An estimate of the prior probability P(relevant), an estimator of the prior densi...	[ "def", "get_estimates", "(", "estimators_tuple", ",", "positions", ",", "num_workers", "=", "1", ")", ":", "estimators", "=", "dict", "(", ")", "estimators", "[", "\"P(relevant)\"", "]", ",", "estimators", "[", "\"p(position)\"", "]", ",", "estimators", "[", ...	49.547619	26.02381
def bruteforce(users, domain, password, host): """ Performs a bruteforce for the given users, password, domain on the given host. """ cs = CredentialSearch(use_pipe=False) print_notification("Connecting to {}".format(host)) s = Server(host) c = Connection(s) for user in users: ...	[ "def", "bruteforce", "(", "users", ",", "domain", ",", "password", ",", "host", ")", ":", "cs", "=", "CredentialSearch", "(", "use_pipe", "=", "False", ")", "print_notification", "(", "\"Connecting to {}\"", ".", "format", "(", "host", ")", ")", "s", "=", ...	40.37037	24.888889
def geo_distance_range(cls, field, center, from_distance, to_distance, distance_type=None): ''' http://www.elasticsearch.org/guide/reference/query-dsl/geo-distance-range-filter.html Filters documents that exists within a range from a specific point ''' instance = cls(geo_distan...	[ "def", "geo_distance_range", "(", "cls", ",", "field", ",", "center", ",", "from_distance", ",", "to_distance", ",", "distance_type", "=", "None", ")", ":", "instance", "=", "cls", "(", "geo_distance_range", "=", "{", "'from'", ":", "from_distance", ",", "'t...	46.818182	35.545455
def set_ram(self, ram): """ Set the RAM amount for the GNS3 VM. :param ram: amount of memory """ yield from self._execute("modifyvm", [self._vmname, "--memory", str(ram)], timeout=3) log.info("GNS3 VM RAM amount set to {}".format(ram))	[ "def", "set_ram", "(", "self", ",", "ram", ")", ":", "yield", "from", "self", ".", "_execute", "(", "\"modifyvm\"", ",", "[", "self", ".", "_vmname", ",", "\"--memory\"", ",", "str", "(", "ram", ")", "]", ",", "timeout", "=", "3", ")", "log", ".", ...	30.777778	19.666667
def enqueue(self, message, *, delay=None): """Enqueue a message. Parameters: message(Message): The message to enqueue. delay(int): The minimum amount of time, in milliseconds, to delay the message by. Must be less than 7 days. Raises: ValueError: If `...	[ "def", "enqueue", "(", "self", ",", "message", ",", "*", ",", "delay", "=", "None", ")", ":", "queue_name", "=", "message", ".", "queue_name", "# Each enqueued message must have a unique id in Redis so", "# using the Message's id isn't safe because messages may be", "# retr...	35.314286	19.314286
async def verify_proof(self, proof_req: dict, proof: dict) -> str: """ Verify proof as Verifier. Raise AbsentRevReg if a proof cites a revocation registry that does not exist on the distributed ledger. :param proof_req: proof request as Verifier creates, as per proof_req_json above ...	[ "async", "def", "verify_proof", "(", "self", ",", "proof_req", ":", "dict", ",", "proof", ":", "dict", ")", "->", "str", ":", "LOGGER", ".", "debug", "(", "'Verifier.verify_proof >>> proof_req: %s, proof: %s'", ",", "proof_req", ",", "proof", ")", "if", "not",...	44.471264	21.689655
def which(program): """ returns the path to an executable or None if it can't be found """ def is_exe(_fpath): return os.path.isfile(_fpath) and os.access(_fpath, os.X_OK) fpath, fname = os.path.split(program) if fpath: if is_exe(program): return program else: ...	[ "def", "which", "(", "program", ")", ":", "def", "is_exe", "(", "_fpath", ")", ":", "return", "os", ".", "path", ".", "isfile", "(", "_fpath", ")", "and", "os", ".", "access", "(", "_fpath", ",", "os", ".", "X_OK", ")", "fpath", ",", "fname", "="...	28.882353	16.882353
def Add(self, request, callback=None): """Add a new request. Args: request: A http_wrapper.Request to add to the batch. callback: A callback to be called for this response, of the form callback(response, exception). The first parameter is the deserialized...	[ "def", "Add", "(", "self", ",", "request", ",", "callback", "=", "None", ")", ":", "handler", "=", "RequestResponseAndHandler", "(", "request", ",", "None", ",", "callback", ")", "self", ".", "__request_response_handlers", "[", "self", ".", "_NewId", "(", ...	40.647059	23.705882
def put(self, key, value): """ >>> c = MemSizeLRUCache(maxmem=24*4) >>> c.put(1, 1) >>> c.mem() # 24-bytes per integer 24 >>> c.put(2, 2) >>> c.put(3, 3) >>> c.put(4, 4) >>> c.get(1) 1 >>> c.mem() 96 >>> c.size() ...	[ "def", "put", "(", "self", ",", "key", ",", "value", ")", ":", "mem", "=", "sys", ".", "getsizeof", "(", "value", ")", "if", "self", ".", "_mem", "+", "mem", ">", "self", ".", "_maxmem", ":", "self", ".", "delete", "(", "self", ".", "last", "("...	23.285714	15.714286
def sci(x, precision=2, base=10, exp_only=False): """ Convert the given floating point number into scientific notation, using unicode superscript characters to nicely render the exponent. """ # Handle the corner cases of zero and non-finite numbers, which can't be # represented using scientif...	[ "def", "sci", "(", "x", ",", "precision", "=", "2", ",", "base", "=", "10", ",", "exp_only", "=", "False", ")", ":", "# Handle the corner cases of zero and non-finite numbers, which can't be ", "# represented using scientific notation.", "if", "x", "==", "0", "or", ...	37.814815	22.407407
def _generate_base_namespace_module(self, api, namespace): """Creates a module for the namespace. All data types and routes are represented as Python classes.""" self.cur_namespace = namespace generate_module_header(self) if namespace.doc is not None: self.emit('"""...	[ "def", "_generate_base_namespace_module", "(", "self", ",", "api", ",", "namespace", ")", ":", "self", ".", "cur_namespace", "=", "namespace", "generate_module_header", "(", "self", ")", "if", "namespace", ".", "doc", "is", "not", "None", ":", "self", ".", "...	42.06383	19.191489
def non_tag_chars_from_raw(html): '''generator that yields clean visible as it transitions through states in the raw `html` ''' n = 0 while n < len(html): # find start of tag angle = html.find('<', n) if angle == -1: yield html[n:] n = len(html) ...	[ "def", "non_tag_chars_from_raw", "(", "html", ")", ":", "n", "=", "0", "while", "n", "<", "len", "(", "html", ")", ":", "# find start of tag", "angle", "=", "html", ".", "find", "(", "'<'", ",", "n", ")", "if", "angle", "==", "-", "1", ":", "yield"...	39.362069	13.258621
def hooi(X, rank, **kwargs): """ Compute Tucker decomposition of a tensor using Higher-Order Orthogonal Iterations. Parameters ---------- X : tensor_mixin The tensor to be decomposed rank : array_like The rank of the decomposition for each mode of the tensor. The len...	[ "def", "hooi", "(", "X", ",", "rank", ",", "", "", "kwargs", ")", ":", "# init options", "ainit", "=", "kwargs", ".", "pop", "(", "'init'", ",", "__DEF_INIT", ")", "maxIter", "=", "kwargs", ".", "pop", "(", "'maxIter'", ",", "__DEF_MAXITER", ")", "...	29.795455	21.340909
def save(self, doc): """Save a doc to cache """ self.log.debug('save()') self.docs.append(doc) self.commit()	[ "def", "save", "(", "self", ",", "doc", ")", ":", "self", ".", "log", ".", "debug", "(", "'save()'", ")", "self", ".", "docs", ".", "append", "(", "doc", ")", "self", ".", "commit", "(", ")" ]	23.833333	9.666667
def _compute_nfps_uniform(cum_counts, sizes): """Computes the matrix of expected false positives for all possible sub-intervals of the complete domain of set sizes, assuming uniform distribution of set_sizes within each sub-intervals. Args: cum_counts: the complete cummulative distribution of s...	[ "def", "_compute_nfps_uniform", "(", "cum_counts", ",", "sizes", ")", ":", "nfps", "=", "np", ".", "zeros", "(", "(", "len", "(", "sizes", ")", ",", "len", "(", "sizes", ")", ")", ")", "# All u an l are inclusive bounds for intervals.", "# Compute p = 1, the NFP...	40.8	19.2
def set_value(self, name, value): """Set value for a variable""" value = to_text_string(value) code = u"get_ipython().kernel.set_value('%s', %s, %s)" % (name, value, PY2) if self._reading: self.kernel_client.i...	[ "def", "set_value", "(", "self", ",", "name", ",", "value", ")", ":", "value", "=", "to_text_string", "(", "value", ")", "code", "=", "u\"get_ipython().kernel.set_value('%s', %s, %s)\"", "%", "(", "name", ",", "value", ",", "PY2", ")", "if", "self", ".", "...	38	17.2
def saveSnapshot(self): ''' Saves the current shanpshot to the specified file. Current snapshot is the image being displayed on the main window. ''' filename = self.snapshotDir + os.sep + '${serialno}-${focusedwindowname}-${timestamp}' + '.' + self.snapshotFormat.lower() ...	[ "def", "saveSnapshot", "(", "self", ")", ":", "filename", "=", "self", ".", "snapshotDir", "+", "os", ".", "sep", "+", "'${serialno}-${focusedwindowname}-${timestamp}'", "+", "'.'", "+", "self", ".", "snapshotFormat", ".", "lower", "(", ")", "# We have the snaps...	59.882353	35.058824
def zoom_blur(x, severity=1): """Zoom blurring to images. Applying zoom blurring to images by zooming the central part of the images. Args: x: numpy array, uncorrupted image, assumed to have uint8 pixel in [0,255]. severity: integer, severity of corruption. Returns: numpy array, image with uint8 ...	[ "def", "zoom_blur", "(", "x", ",", "severity", "=", "1", ")", ":", "c", "=", "[", "np", ".", "arange", "(", "1", ",", "1.11", ",", "0.01", ")", ",", "np", ".", "arange", "(", "1", ",", "1.16", ",", "0.01", ")", ",", "np", ".", "arange", "("...	29.153846	18.076923
def list_deployments(jboss_config): ''' List all deployments on the jboss instance jboss_config Configuration dictionary with properties specified above. CLI Example: .. code-block:: bash salt '*' jboss7.list_deployments '{"cli_path": "integration.modules.sysmod.SysModuleTest....	[ "def", "list_deployments", "(", "jboss_config", ")", ":", "log", ".", "debug", "(", "\"======================== MODULE FUNCTION: jboss7.list_deployments\"", ")", "command_result", "=", "__salt__", "[", "'jboss7_cli.run_command'", "]", "(", "jboss_config", ",", "'deploy'", ...	36.47619	32.285714
def _getitem_normalized(self, index): """Builds the more compact fmtstrs by using fromstr( of the control sequences)""" index = normalize_slice(len(self), index) counter = 0 output = '' for fs in self.chunks: if index.start < counter + len(fs) and index.stop > counter...	[ "def", "_getitem_normalized", "(", "self", ",", "index", ")", ":", "index", "=", "normalize_slice", "(", "len", "(", "self", ")", ",", "index", ")", "counter", "=", "0", "output", "=", "''", "for", "fs", "in", "self", ".", "chunks", ":", "if", "index...	42.785714	14.714286
def append(self, record): """ Adds the passed +record+ to satisfy the query. Only intended to be used in conjunction with associations (i.e. do not use if self.record is None). Intended use case (DO THIS): post.comments.append(comment) NOT THIS: Query(...	[ "def", "append", "(", "self", ",", "record", ")", ":", "if", "self", ".", "record", ":", "self", ".", "_validate_record", "(", "record", ")", "if", "self", ".", "join_args", ":", "# As always, the related record is created when the primary", "# record is saved", "...	46.36	21.72
def stop(self, precision=0): """ Stops the timer, adds it as an interval to :prop:intervals @precision: #int number of decimal places to round to -> #str formatted interval time """ self._stop = time.perf_counter() return self.add_interval(precision)	[ "def", "stop", "(", "self", ",", "precision", "=", "0", ")", ":", "self", ".", "_stop", "=", "time", ".", "perf_counter", "(", ")", "return", "self", ".", "add_interval", "(", "precision", ")" ]	37.5	10.375
def getskyimg(self,chip): """ Notes ===== Return an array representing the sky image for the detector. The value of the sky is what would actually be subtracted from the exposure by the skysub step. :units: electrons """ sci_chip = self._image[s...	[ "def", "getskyimg", "(", "self", ",", "chip", ")", ":", "sci_chip", "=", "self", ".", "_image", "[", "self", ".", "scienceExt", ",", "chip", "]", "return", "np", ".", "ones", "(", "sci_chip", ".", "image_shape", ",", "dtype", "=", "sci_chip", ".", "i...	32.538462	24.692308
def sorted_errors(self): """ Generator for (rank, name, MSE, MAE) sorted by increasing MAE """ for i, (name, mae) in enumerate( sorted(self.mae_dict.items(), key=lambda x: x[1])): yield(i + 1, name, self.mse_dict[name], self.mae_dict[name],)	[ "def", "sorted_errors", "(", "self", ")", ":", "for", "i", ",", "(", "name", ",", "mae", ")", "in", "enumerate", "(", "sorted", "(", "self", ".", "mae_dict", ".", "items", "(", ")", ",", "key", "=", "lambda", "x", ":", "x", "[", "1", "]", ")", ...	42.142857	15
def image_to_pdf_or_hocr(image, lang=None, config='', nice=0, extension='pdf'): ''' Returns the result of a Tesseract OCR run on the provided image to pdf/hocr ''' if extension not in {'pdf', 'hocr'}: raise ValueErr...	[ "def", "image_to_pdf_or_hocr", "(", "image", ",", "lang", "=", "None", ",", "config", "=", "''", ",", "nice", "=", "0", ",", "extension", "=", "'pdf'", ")", ":", "if", "extension", "not", "in", "{", "'pdf'", ",", "'hocr'", "}", ":", "raise", "ValueEr...	32.142857	20
def execute_command(self): """ The run command implements the web content extractor corresponding to the given \ configuration file. The execute_command() validates the input project name and opens the JSON \ configuration file. The run() method handles the execution of the ext...	[ "def", "execute_command", "(", "self", ")", ":", "try", ":", "self", ".", "args", "[", "'--verbosity'", "]", "=", "int", "(", "self", ".", "args", "[", "'--verbosity'", "]", ")", "if", "self", ".", "args", "[", "'--verbosity'", "]", "not", "in", "[",...	48.173913	27.608696
def disconnect(self, frame): """ Handles the DISCONNECT command: Unbinds the connection. Clients are supposed to send this command, but in practice it should not be relied upon. """ self.engine.log.debug("Disconnect") self.engine.unbind()	[ "def", "disconnect", "(", "self", ",", "frame", ")", ":", "self", ".", "engine", ".", "log", ".", "debug", "(", "\"Disconnect\"", ")", "self", ".", "engine", ".", "unbind", "(", ")" ]	31.888889	17
def fasta_from_biom(table, fasta_file_name): '''Save sequences from a biom table to a fasta file Parameters ---------- table : biom.Table The biom table containing the sequences fasta_file_name : str Name of the fasta output file ''' logger = logging.getLogger(__name__) ...	[ "def", "fasta_from_biom", "(", "table", ",", "fasta_file_name", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "logger", ".", "debug", "(", "'saving biom table sequences to fasta file %s'", "%", "fasta_file_name", ")", "with", "open", ...	35.588235	19.235294
def init_widget(self): """ Initialize the underlying widget. """ super(AndroidProgressBar, self).init_widget() d = self.declaration self.set_indeterminate(self.indeterminate) if not self.indeterminate: if d.max: self.set_max(d.max) ...	[ "def", "init_widget", "(", "self", ")", ":", "super", "(", "AndroidProgressBar", ",", "self", ")", ".", "init_widget", "(", ")", "d", "=", "self", ".", "declaration", "self", ".", "set_indeterminate", "(", "self", ".", "indeterminate", ")", "if", "not", ...	27.611111	16.5
def _remove_nulls(managed_clusters): """ Remove some often-empty fields from a list of ManagedClusters, so the JSON representation doesn't contain distracting null fields. This works around a quirk of the SDK for python behavior. These fields are not sent by the server, but get recreated by the CLI...	[ "def", "_remove_nulls", "(", "managed_clusters", ")", ":", "attrs", "=", "[", "'tags'", "]", "ap_attrs", "=", "[", "'os_disk_size_gb'", ",", "'vnet_subnet_id'", "]", "sp_attrs", "=", "[", "'secret'", "]", "for", "managed_cluster", "in", "managed_clusters", ":", ...	45.130435	18.782609
def get_exception(): """Return full formatted traceback as a string.""" trace = "" exception = "" exc_list = traceback.format_exception_only( sys.exc_info()[0], sys.exc_info()[1] ) for entry in exc_list: exception += entry tb_list = traceback.format_tb(sys.exc_info()[2]) ...	[ "def", "get_exception", "(", ")", ":", "trace", "=", "\"\"", "exception", "=", "\"\"", "exc_list", "=", "traceback", ".", "format_exception_only", "(", "sys", ".", "exc_info", "(", ")", "[", "0", "]", ",", "sys", ".", "exc_info", "(", ")", "[", "1", ...	30.230769	14.384615
def get(self, key, mem_map=True): """ Read and return the data stored for the given key. Args: key (str): The key to read the data from. mem_map (bool): If ``True`` returns the data as memory-mapped array, otherwise a copy is returned. ...	[ "def", "get", "(", "self", ",", "key", ",", "mem_map", "=", "True", ")", ":", "self", ".", "raise_error_if_not_open", "(", ")", "if", "key", "in", "self", ".", "_file", ":", "data", "=", "self", ".", "_file", "[", "key", "]", "if", "not", "mem_map"...	25.384615	20.461538
def merge(a, b): """Merge two ranges with step == 1. Parameters ---------- a : range The first range. b : range The second range. """ _check_steps(a, b) return range(min(a.start, b.start), max(a.stop, b.stop))	[ "def", "merge", "(", "a", ",", "b", ")", ":", "_check_steps", "(", "a", ",", "b", ")", "return", "range", "(", "min", "(", "a", ".", "start", ",", "b", ".", "start", ")", ",", "max", "(", "a", ".", "stop", ",", "b", ".", "stop", ")", ")" ]	20.583333	19.916667
def addSubsequenceOfFeature(self, parentid): """ This will add reciprocal triples like: feature <is subsequence of> parent parent has_subsequence feature :param graph: :param parentid: :return: """ self.graph.addTriple(self.fid, self.globaltt['is...	[ "def", "addSubsequenceOfFeature", "(", "self", ",", "parentid", ")", ":", "self", ".", "graph", ".", "addTriple", "(", "self", ".", "fid", ",", "self", ".", "globaltt", "[", "'is subsequence of'", "]", ",", "parentid", ")", "# this should be expected to be done ...	31.125	20.625
def subtype_ids(elements, subtype): """ returns the ids of all elements of a list that have a certain type, e.g. show all the nodes that are ``TokenNode``\s. """ return [i for (i, element) in enumerate(elements) if isinstance(element, subtype)]	[ "def", "subtype_ids", "(", "elements", ",", "subtype", ")", ":", "return", "[", "i", "for", "(", "i", ",", "element", ")", "in", "enumerate", "(", "elements", ")", "if", "isinstance", "(", "element", ",", "subtype", ")", "]" ]	38.571429	9.428571
def rgb_percent_to_name(rgb_percent_triplet, spec=u'css3'): """ Convert a 3-tuple of percentages, suitable for use in an ``rgb()`` color triplet, to its corresponding normalized color name, if any such name exists. The optional keyword argument ``spec`` determines which specification's list of ...	[ "def", "rgb_percent_to_name", "(", "rgb_percent_triplet", ",", "spec", "=", "u'css3'", ")", ":", "return", "rgb_to_name", "(", "rgb_percent_to_rgb", "(", "normalize_percent_triplet", "(", "rgb_percent_triplet", ")", ")", ",", "spec", "=", "spec", ")" ]	30.409091	22.318182
def _transfer_data(self, remote_path, data): """ Used by the base _execute_module(), and in <2.4 also by the template action module, and probably others. """ if isinstance(data, dict): data = jsonify(data) if not isinstance(data, bytes): data = to_...	[ "def", "_transfer_data", "(", "self", ",", "remote_path", ",", "data", ")", ":", "if", "isinstance", "(", "data", ",", "dict", ")", ":", "data", "=", "jsonify", "(", "data", ")", "if", "not", "isinstance", "(", "data", ",", "bytes", ")", ":", "data",...	38.428571	12.428571
def update_event(self, id, **kwargs): # noqa: E501 """Update a specific event # noqa: E501 The following fields are readonly and will be ignored when passed in the request: <code>id</code>, <code>isEphemeral</code>, <code>isUserEvent</code>, <code>runningState</code>, <code>canDelete</code>, <code>ca...	[ "def", "update_event", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "return", "self", ".", "update_event_wi...	72.272727	47.318182
def search_list(kb, value=None, match_type=None, page=None, per_page=None, unique=False): """Search "mappings to" for knowledge.""" # init page = page or 1 per_page = per_page or 10 if kb.kbtype == models.KnwKB.KNWKB_TYPES['written_as']: # get the...	[ "def", "search_list", "(", "kb", ",", "value", "=", "None", ",", "match_type", "=", "None", ",", "page", "=", "None", ",", "per_page", "=", "None", ",", "unique", "=", "False", ")", ":", "# init", "page", "=", "page", "or", "1", "per_page", "=", "p...	39.2	11.5
def process_msg(self, msg): """Process messages from the event stream.""" jmsg = json.loads(msg) msgtype = jmsg['MessageType'] msgdata = jmsg['Data'] _LOGGER.debug('New websocket message recieved of type: %s', msgtype) if msgtype == 'Sessions': self._sessions...	[ "def", "process_msg", "(", "self", ",", "msg", ")", ":", "jmsg", "=", "json", ".", "loads", "(", "msg", ")", "msgtype", "=", "jmsg", "[", "'MessageType'", "]", "msgdata", "=", "jmsg", "[", "'Data'", "]", "_LOGGER", ".", "debug", "(", "'New websocket me...	33.777778	12.388889

def text2sentences(text, labels): ''' Splits given text at predicted positions from `labels` ''' sentence = '' for i, label in enumerate(labels): if label == '1': if sentence: yield sentence sentence = '' else: sentence += text[i] ...

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24.642857

17.928571

def contraction_conical_Crane(Di1, Di2, l=None, angle=None): r'''Returns loss coefficient for a conical pipe contraction as shown in Crane TP 410M [1]_ between 0 and 180 degrees. If :math:`\theta < 45^{\circ}`: .. math:: K_2 = {0.8 \sin \frac{\theta}{2}(1 - \beta^2)} otherwise: ...

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28.913043

25.115942

def run(self): """Continously scan for BLE advertisements.""" self.socket = self.bluez.hci_open_dev(self.bt_device_id) filtr = self.bluez.hci_filter_new() self.bluez.hci_filter_all_events(filtr) self.bluez.hci_filter_set_ptype(filtr, self.bluez.HCI_EVENT_PKT) self.socket...

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38.55

17.35

def _update_rr_ce_entry(self, rec): # type: (dr.DirectoryRecord) -> int ''' An internal method to update the Rock Ridge CE entry for the given record. Parameters: rec - The record to update the Rock Ridge CE entry for (if it exists). Returns: The number...

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41.15

26.15

def image_id_from_registry(image_name): """Get the docker id from a public or private registry""" registry, repository, tag = parse(image_name) try: token = auth_token(registry, repository).get("token") # dockerhub is crazy if registry == "index.docker.io": registry = "re...

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47.944444

18.888889

def _set_conf(self): """ Set configuration parameters from the Conf object into the detector object. Time values are converted to samples, and amplitude values are in mV. """ self.rr_init = 60 * self.fs / self.conf.hr_init self.rr_max = 60 * self.fs / self.conf.h...

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39.4

22.8

def _notify_add_at(self, index, length=1): """Notify about an AddChange at a caertain index and length.""" slice_ = self._slice_at(index, length) self._notify_add(slice_)

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47.75

4

def _run_configure(subcmd, args): """Runs the configuration step for the specified sub-command. """ maps = { "packages": _conf_packages } if subcmd in maps: maps[subcmd](args) else: msg.warn("'configure' sub-command {} is not supported.".format(subcmd))

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29.6

17.4

def _move(self, speed=0, steering=0, seconds=None): """Move robot.""" self.drive_queue.put((speed, steering)) if seconds is not None: time.sleep(seconds) self.drive_queue.put((0, 0)) self.drive_queue.join()

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36.571429

6.428571

def from_api_repr(cls, resource): """Factory: construct a model reference given its API representation Args: resource (Dict[str, object]): Model reference representation returned from the API Returns: google.cloud.bigquery.model.ModelReference: ...

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34.571429

19.857143

def update_pass(user_id, newpass): ''' Update the password of a user. ''' out_dic = {'success': False, 'code': '00'} entry = TabMember.update(user_pass=tools.md5(newpass)).where(TabMember.uid == user_id) entry.execute() out_dic['success'] = True return...

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24.307692

25.538462

def read(self): """ Read the target value Use $project aggregate operator in order to support nested objects """ result = self.get_collection().aggregate([ {'$match': {'_id': self._document_id}}, {'$project': {'_value': '$' + self._path, '_id': False}} ...

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28.866667

18.333333

def _find_flats_edges(self, data, mag, direction): """ Extend flats 1 square downstream Flats on the downstream side of the flat might find a valid angle, but that doesn't mean that it's a correct angle. We have to find these and then set them equal to a flat """ ...

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33.375

15.708333

def move_odict_item(odict, key, newpos): """ References: http://stackoverflow.com/questions/22663966/changing-order-of-ordered-dictionary-in-python CommandLine: python -m utool.util_dict --exec-move_odict_item Example: >>> # ENABLE_DOCTEST >>> from utool.util_dict impor...

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33.588235

12.588235

def list_themes_user(): """List user theme files.""" themes = [*os.scandir(os.path.join(CONF_DIR, "colorschemes/dark/")), *os.scandir(os.path.join(CONF_DIR, "colorschemes/light/"))] return [t for t in themes if os.path.isfile(t.path)]

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51.2

19.6

def sum(x, weights=None): ''' sum(x) yields either a potential-sum object if x is a potential function or the sum of x if x is not. If x is not a potential-field then it must be a vector. sum(x, weights=w) uses the given weights to produce a weighted sum. ''' x = to_potential(x) if is_cons...

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48.333333

30.111111

def save_output(results, output_directory="output"): """ Save report data in the given directory Args: results (OrderedDict): Parsing results output_directory: The patch to the directory to save in """ aggregate_reports = results["aggregate_reports"] forensic_reports = results[...

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38.65

20.816667

def find_and_remove(self, f: Callable): """ Removes any and all fields for which `f(field)` returns `True`. """ self._table = [fld for fld in self._table if not f(fld)]

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39.2

11.2

def vrange(start, stop, step=1, dtype='f8'): """Creates a virtual column which is the equivalent of numpy.arange, but uses 0 memory""" from .column import ColumnVirtualRange return ColumnVirtualRange(start, stop, step, dtype)

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58.5

5.25

def connectedVertices(self, index, returnIds=False): """Find all vertices connected to an input vertex specified by its index. :param bool returnIds: return vertex IDs instead of vertex coordinates. .. hint:: |connVtx| |connVtx.py|_ """ mesh = self.polydata() cellIdLis...

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31.575758

16.060606

def ind_zero_freq(self): """ Index of the first point for which the freqencies are equal or greater than zero. """ ind = np.searchsorted(self.frequencies, 0) if ind >= len(self.frequencies): raise ValueError("No positive frequencies found") return ind

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38

14.75

def ConvCnstrMODMaskOptions(opt=None, method='fista'): """A wrapper function that dynamically defines a class derived from the Options class associated with one of the implementations of the Convolutional Constrained MOD problem, and returns an object instantiated with the provided parameters. The wrapp...

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46.8

20.4

def json(self): """Custom JSON encoder""" attributes = { 'type': self.type, 'filename': self.filename, 'line_number': self.lineno, 'hashed_secret': self.secret_hash, } if self.is_secret is not None: attributes['is_secret'] = se...

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26.692308

15.538462

def get(self, sid): """ Constructs a InviteContext :param sid: The unique string that identifies the resource :returns: twilio.rest.chat.v2.service.channel.invite.InviteContext :rtype: twilio.rest.chat.v2.service.channel.invite.InviteContext """ return InviteCon...

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31.933333

20.2

def update_membership_memberships(self, group_id, membership_id, moderator=None, workflow_state=None): """ Update a membership. Accept a membership request, or add/remove moderator rights. """ path = {} data = {} params = {} # REQUIRED - PATH -...

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38.870968

23.483871

def _resolve_reference_sample(self, reference_samples=None, service_uids=None): """Returns the reference sample from reference_samples passed in that fits better with the service uid requirements. This is, the reference sample that covers most (or all) of the se...

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41.914894

18.914894

def _make_signature(self): """ Create a signature for `execute` based on the minimizers this `ChainedMinimizer` was initiated with. For the format, see the docstring of :meth:`ChainedMinimizer.execute`. :return: :class:`inspect.Signature` instance. """ # Create K...

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41.515152

19.757576

def ms_contrast_restore(self, viewer, event, data_x, data_y, msg=True): """An interactive way to restore the colormap contrast settings after a warp operation. """ if self.cancmap and (event.state == 'down'): self.restore_contrast(viewer, msg=msg) return True

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43.571429

12.714286

def path_exists(path): """ Check if file exists either remote or local. Parameters: ----------- path : path to file Returns: -------- exists : bool """ if path.startswith(("http://", "https://")): try: urlopen(path).info() return True exc...

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25.125

17.1875

def find_lemma(self, verb): """ Returns the base form of the given inflected verb, using a rule-based approach. """ v = verb.lower() # Common prefixes: be-finden and emp-finden probably inflect like finden. if not (v.startswith("ge") and v.endswith("t")): # Probably gerund. ...

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48.857143

17.857143

def dependency_list(self, tkn: str) -> List[str]: """Return a list all of the grammarelts that depend on tkn :param tkn: :return: """ if tkn not in self.dependency_map: self.dependency_map[tkn] = [tkn] # Force a circular reference self.dependency_...

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39.9

17.2

def get_third_party(self, third_party): """Return the account for the given third-party. Raise <something> if the third party doesn't belong to this bookset.""" actual_account = third_party.get_account() assert actual_account.get_bookset() == self return ThirdPartySubAccount(actual_acco...

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69

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def NewFromJSON(data): """ Create a new Shake instance from a JSON dict. Args: data (dict): JSON dictionary representing a Shake. Returns: A Shake instance. """ s = Shake( id=data.get('id', None), name=data.get('name', Non...

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31.608696

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def authenticate(session, username, password): """ Authenticate a PasswordUser with the specified username/password. :param session: An active SQLAlchemy session :param username: The username :param password: The password :raise AuthenticationError: if an error occurred :return: a Pass...

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def delete_entity_alias(self, alias_id, mount_point=DEFAULT_MOUNT_POINT): """Delete a entity alias. Supported methods: DELETE: /{mount_point}/entity-alias/id/{alias_id}. Produces: 204 (empty body) :param alias_id: Identifier of the entity. :type alias_id: str | unicode ...

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35.8

18.1

def get(self,identity,params=None, headers=None): """Get a single creditor bank account. Retrieves the details of an existing creditor bank account. Args: identity (string): Unique identifier, beginning with "BA". params (dict, optional): Query string parameters. ...

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33.666667

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def L_diffuser_inner(sed_inputs=sed_dict): """Return the inner length of each diffuser in the sedimentation tank. Parameters ---------- sed_inputs : dict A dictionary of all of the constant inputs needed for sedimentation tank calculations can be found in sed.yaml Returns -------...

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33.555556

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def runs_done(): """Marks a release candidate as having all runs reported.""" build = g.build release_name, release_number = _get_release_params() release = ( models.Release.query .filter_by(build_id=build.id, name=release_name, number=release_number) .with_lockmode('update') ...

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30.4375

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def send_message(self, message): """ Prepare a message to send on the UDP socket. Eventually set retransmissions. :param message: the message to send """ if isinstance(message, Request): request = self._requestLayer.send_request(message) request = self._o...

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def _pad(self, text): """Pad the text.""" top_bottom = ("\n" * self._padding) + " " right_left = " " * self._padding * self.PAD_WIDTH return top_bottom + right_left + text + right_left + top_bottom

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45

15.2

def maybe_call_fn_and_grads(fn, fn_arg_list, result=None, grads=None, check_non_none_grads=True, name=None): """Calls `fn` and computes the gradient of the result wrt `args_list`...

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52.75

15.208333

def _not(cls, operation): """not operation""" def _wrap(*args, **kwargs): return not operation(*args, **kwargs) return _wrap

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22.285714

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def plot_eq(fignum, DIblock, s): """ plots directions on eqarea projection Parameters __________ fignum : matplotlib figure number DIblock : nested list of dec/inc pairs s : specimen name """ # make the stereonet plt.figure(num=fignum) if len(DIblock) < 1: return # pl...

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22.166667

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def get_chunks(sequence, chunk_size): """Split sequence into chunks. :param list sequence: :param int chunk_size: """ return [ sequence[idx:idx + chunk_size] for idx in range(0, len(sequence), chunk_size) ]

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23.8

15.1

def _sample(self, position, trajectory_length, stepsize, lsteps=None): """ Runs a single sampling iteration to return a sample """ # Resampling momentum momentum = np.reshape(np.random.normal(0, 1, len(position)), position.shape) # position_m here will be the previous sa...

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40.53125

25.40625

def _hugoniot_p(self, v): """ calculate static pressure at 300 K. :param v: unit-cell volume in A^3 :return: static pressure at t_ref (=300 K) in GPa """ rho = self._get_rho(v) params = self._set_params(self.params_hugoniot) if self.nonlinear: ...

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31

11.769231

def load_and_preprocess_imdb_data(n_gram=None): """Load IMDb data and augment with hashed n-gram features.""" X_train, y_train, X_test, y_test = tl.files.load_imdb_dataset(nb_words=VOCAB_SIZE) if n_gram is not None: X_train = np.array([augment_with_ngrams(x, VOCAB_SIZE, N_BUCKETS, n=n_gram) for x i...

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52.111111

30.222222

def get_by_uri(self, uri): '''Get a concept or collection by its uri. Returns a single concept or collection if one exists with this uri. Returns False otherwise. :param string uri: The uri to find a concept or collection for. :raises ValueError: The uri is invalid. :rt...

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38.36

20.12

def get_links_of_type(self, s_type=''): """Return the `s_type` satellite list (eg. schedulers) If s_type is None, returns a dictionary of all satellites, else returns the dictionary of the s_type satellites The returned dict is indexed with the satellites uuid. :param s_type: ...

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35.545455

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def resolve(self, current_file, rel_path): """Search the filesystem.""" p = path.join(path.dirname(current_file), rel_path) if p not in self.file_dict: raise RuntimeError('No such fake file: %r' % p) return p, p

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38

10.666667

def simPrepare(unit: Unit, modelCls: Optional[SimModel]=None, targetPlatform=DummyPlatform(), dumpModelIn: str=None, onAfterToRtl=None): """ Create simulation model and connect it with interfaces of original unit and decorate it with agents :param unit: interface level uni...

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37.828571

19.257143

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43.592593

18.962963

def get_info(df, group, info=['mean', 'std']): """ Aggregate mean and std with the given group. """ agg = df.groupby(group).agg(info) agg.columns = agg.columns.droplevel(0) return agg

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28.714286

6.428571

def _default_handlers(self): """ Generate the handlers for this site """ static_path = os.path.abspath(os.path.join(os.path.dirname(__file__),"static")) urls = [ (r"/static/(.*)", cyclone.web.StaticFileHandler, {"path": static_path}), ] for p in self.pages: ...

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38.083333

18.833333

def pubsub_pub(self, topic, payload, **kwargs): """Publish a message to a given pubsub topic Publishing will publish the given payload (string) to everyone currently subscribed to the given topic. All data (including the id of the publisher) is automatically base64 encoded when...

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30.107143

20.857143

def authenticate(api_key, api_url, **kwargs): """Returns a muddle instance, with API key and url set for requests.""" muddle = Muddle(**kwargs) # Login. muddle.authenticate(api_key, api_url) return muddle

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27.375

18.5

def default_job_name(self): """Slurm job name if not already specified in the `sbatch` section""" name = '' if not self.root.existing_campaign: campaign_file = osp.basename(self.root.campaign_file) campaign = osp.splitext(campaign_file)[0] name += camp...

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36.6

12

def S(Document, *fields): """Generate a MongoDB sort order list using the Django ORM style.""" result = [] for field in fields: if isinstance(field, tuple): # Unpack existing tuple. field, direction = field result.append((field, direction)) continue direction = ASCENDING if not field.starts...

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21.481481

23

def to_task(self): """Return a task object representing this async job.""" from google.appengine.api.taskqueue import Task from google.appengine.api.taskqueue import TaskRetryOptions self._increment_recursion_level() self.check_recursion_depth() url = "%s/%s" % (ASYNC_E...

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34.478261

21.043478

def get_cdk_stacks(module_path, env_vars, context_opts): """Return list of CDK stacks.""" LOGGER.debug('Listing stacks in the CDK app prior to ' 'diff') return subprocess.check_output( generate_node_command( command='cdk', command_opts=['list'] + context_opts...

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35.363636

12.090909

def get_estimates(estimators_tuple, positions, num_workers=1): """ Estimates densities, and probabilities for paragraph positions. Parameters ---------- estimators_tuple : (float, KernelDensity, KernelDensity) An estimate of the prior probability P(relevant), an estimator of the prior densi...

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49.547619

26.02381

def bruteforce(users, domain, password, host): """ Performs a bruteforce for the given users, password, domain on the given host. """ cs = CredentialSearch(use_pipe=False) print_notification("Connecting to {}".format(host)) s = Server(host) c = Connection(s) for user in users: ...

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40.37037

24.888889

def geo_distance_range(cls, field, center, from_distance, to_distance, distance_type=None): ''' http://www.elasticsearch.org/guide/reference/query-dsl/geo-distance-range-filter.html Filters documents that exists within a range from a specific point ''' instance = cls(geo_distan...

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46.818182

35.545455

def set_ram(self, ram): """ Set the RAM amount for the GNS3 VM. :param ram: amount of memory """ yield from self._execute("modifyvm", [self._vmname, "--memory", str(ram)], timeout=3) log.info("GNS3 VM RAM amount set to {}".format(ram))

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30.777778

19.666667

def enqueue(self, message, *, delay=None): """Enqueue a message. Parameters: message(Message): The message to enqueue. delay(int): The minimum amount of time, in milliseconds, to delay the message by. Must be less than 7 days. Raises: ValueError: If `...

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35.314286

19.314286

async def verify_proof(self, proof_req: dict, proof: dict) -> str: """ Verify proof as Verifier. Raise AbsentRevReg if a proof cites a revocation registry that does not exist on the distributed ledger. :param proof_req: proof request as Verifier creates, as per proof_req_json above ...

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44.471264

21.689655

def which(program): """ returns the path to an executable or None if it can't be found """ def is_exe(_fpath): return os.path.isfile(_fpath) and os.access(_fpath, os.X_OK) fpath, fname = os.path.split(program) if fpath: if is_exe(program): return program else: ...

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28.882353

16.882353

def Add(self, request, callback=None): """Add a new request. Args: request: A http_wrapper.Request to add to the batch. callback: A callback to be called for this response, of the form callback(response, exception). The first parameter is the deserialized...

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40.647059

23.705882

def put(self, key, value): """ >>> c = MemSizeLRUCache(maxmem=24*4) >>> c.put(1, 1) >>> c.mem() # 24-bytes per integer 24 >>> c.put(2, 2) >>> c.put(3, 3) >>> c.put(4, 4) >>> c.get(1) 1 >>> c.mem() 96 >>> c.size() ...

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23.285714

15.714286

def sci(x, precision=2, base=10, exp_only=False): """ Convert the given floating point number into scientific notation, using unicode superscript characters to nicely render the exponent. """ # Handle the corner cases of zero and non-finite numbers, which can't be # represented using scientif...

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37.814815

22.407407

def _generate_base_namespace_module(self, api, namespace): """Creates a module for the namespace. All data types and routes are represented as Python classes.""" self.cur_namespace = namespace generate_module_header(self) if namespace.doc is not None: self.emit('"""...

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42.06383

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def non_tag_chars_from_raw(html): '''generator that yields clean visible as it transitions through states in the raw `html` ''' n = 0 while n < len(html): # find start of tag angle = html.find('<', n) if angle == -1: yield html[n:] n = len(html) ...

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39.362069

13.258621

def hooi(X, rank, **kwargs): """ Compute Tucker decomposition of a tensor using Higher-Order Orthogonal Iterations. Parameters ---------- X : tensor_mixin The tensor to be decomposed rank : array_like The rank of the decomposition for each mode of the tensor. The len...

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29.795455

21.340909

def save(self, doc): """Save a doc to cache """ self.log.debug('save()') self.docs.append(doc) self.commit()

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23.833333

9.666667

def _compute_nfps_uniform(cum_counts, sizes): """Computes the matrix of expected false positives for all possible sub-intervals of the complete domain of set sizes, assuming uniform distribution of set_sizes within each sub-intervals. Args: cum_counts: the complete cummulative distribution of s...

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40.8

19.2

def set_value(self, name, value): """Set value for a variable""" value = to_text_string(value) code = u"get_ipython().kernel.set_value('%s', %s, %s)" % (name, value, PY2) if self._reading: self.kernel_client.i...

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38

17.2

def saveSnapshot(self): ''' Saves the current shanpshot to the specified file. Current snapshot is the image being displayed on the main window. ''' filename = self.snapshotDir + os.sep + '${serialno}-${focusedwindowname}-${timestamp}' + '.' + self.snapshotFormat.lower() ...

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59.882353

35.058824

def zoom_blur(x, severity=1): """Zoom blurring to images. Applying zoom blurring to images by zooming the central part of the images. Args: x: numpy array, uncorrupted image, assumed to have uint8 pixel in [0,255]. severity: integer, severity of corruption. Returns: numpy array, image with uint8 ...

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29.153846

18.076923

def list_deployments(jboss_config): ''' List all deployments on the jboss instance jboss_config Configuration dictionary with properties specified above. CLI Example: .. code-block:: bash salt '*' jboss7.list_deployments '{"cli_path": "integration.modules.sysmod.SysModuleTest....

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36.47619

32.285714

def _getitem_normalized(self, index): """Builds the more compact fmtstrs by using fromstr( of the control sequences)""" index = normalize_slice(len(self), index) counter = 0 output = '' for fs in self.chunks: if index.start < counter + len(fs) and index.stop > counter...

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42.785714

14.714286

def append(self, record): """ Adds the passed +record+ to satisfy the query. Only intended to be used in conjunction with associations (i.e. do not use if self.record is None). Intended use case (DO THIS): post.comments.append(comment) NOT THIS: Query(...

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46.36

21.72

def stop(self, precision=0): """ Stops the timer, adds it as an interval to :prop:intervals @precision: #int number of decimal places to round to -> #str formatted interval time """ self._stop = time.perf_counter() return self.add_interval(precision)

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37.5

10.375

def getskyimg(self,chip): """ Notes ===== Return an array representing the sky image for the detector. The value of the sky is what would actually be subtracted from the exposure by the skysub step. :units: electrons """ sci_chip = self._image[s...

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32.538462

24.692308

def sorted_errors(self): """ Generator for (rank, name, MSE, MAE) sorted by increasing MAE """ for i, (name, mae) in enumerate( sorted(self.mae_dict.items(), key=lambda x: x[1])): yield(i + 1, name, self.mse_dict[name], self.mae_dict[name],)

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42.142857

15

def image_to_pdf_or_hocr(image, lang=None, config='', nice=0, extension='pdf'): ''' Returns the result of a Tesseract OCR run on the provided image to pdf/hocr ''' if extension not in {'pdf', 'hocr'}: raise ValueErr...

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32.142857

20

def execute_command(self): """ The run command implements the web content extractor corresponding to the given \ configuration file. The execute_command() validates the input project name and opens the JSON \ configuration file. The run() method handles the execution of the ext...

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48.173913

27.608696

def disconnect(self, frame): """ Handles the DISCONNECT command: Unbinds the connection. Clients are supposed to send this command, but in practice it should not be relied upon. """ self.engine.log.debug("Disconnect") self.engine.unbind()

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31.888889

17

def fasta_from_biom(table, fasta_file_name): '''Save sequences from a biom table to a fasta file Parameters ---------- table : biom.Table The biom table containing the sequences fasta_file_name : str Name of the fasta output file ''' logger = logging.getLogger(__name__) ...

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35.588235

19.235294

def init_widget(self): """ Initialize the underlying widget. """ super(AndroidProgressBar, self).init_widget() d = self.declaration self.set_indeterminate(self.indeterminate) if not self.indeterminate: if d.max: self.set_max(d.max) ...

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27.611111

16.5

def _remove_nulls(managed_clusters): """ Remove some often-empty fields from a list of ManagedClusters, so the JSON representation doesn't contain distracting null fields. This works around a quirk of the SDK for python behavior. These fields are not sent by the server, but get recreated by the CLI...

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45.130435

18.782609

def get_exception(): """Return full formatted traceback as a string.""" trace = "" exception = "" exc_list = traceback.format_exception_only( sys.exc_info()[0], sys.exc_info()[1] ) for entry in exc_list: exception += entry tb_list = traceback.format_tb(sys.exc_info()[2]) ...

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30.230769

14.384615

def get(self, key, mem_map=True): """ Read and return the data stored for the given key. Args: key (str): The key to read the data from. mem_map (bool): If ``True`` returns the data as memory-mapped array, otherwise a copy is returned. ...

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25.384615

20.461538

def merge(a, b): """Merge two ranges with step == 1. Parameters ---------- a : range The first range. b : range The second range. """ _check_steps(a, b) return range(min(a.start, b.start), max(a.stop, b.stop))

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20.583333

19.916667

def addSubsequenceOfFeature(self, parentid): """ This will add reciprocal triples like: feature <is subsequence of> parent parent has_subsequence feature :param graph: :param parentid: :return: """ self.graph.addTriple(self.fid, self.globaltt['is...

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31.125

20.625

def subtype_ids(elements, subtype): """ returns the ids of all elements of a list that have a certain type, e.g. show all the nodes that are ``TokenNode``\s. """ return [i for (i, element) in enumerate(elements) if isinstance(element, subtype)]

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38.571429

9.428571

def rgb_percent_to_name(rgb_percent_triplet, spec=u'css3'): """ Convert a 3-tuple of percentages, suitable for use in an ``rgb()`` color triplet, to its corresponding normalized color name, if any such name exists. The optional keyword argument ``spec`` determines which specification's list of ...

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30.409091

22.318182

def _transfer_data(self, remote_path, data): """ Used by the base _execute_module(), and in <2.4 also by the template action module, and probably others. """ if isinstance(data, dict): data = jsonify(data) if not isinstance(data, bytes): data = to_...

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38.428571

12.428571

def update_event(self, id, **kwargs): # noqa: E501 """Update a specific event # noqa: E501 The following fields are readonly and will be ignored when passed in the request: <code>id</code>, <code>isEphemeral</code>, <code>isUserEvent</code>, <code>runningState</code>, <code>canDelete</code>, <code>ca...

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72.272727

47.318182

def search_list(kb, value=None, match_type=None, page=None, per_page=None, unique=False): """Search "mappings to" for knowledge.""" # init page = page or 1 per_page = per_page or 10 if kb.kbtype == models.KnwKB.KNWKB_TYPES['written_as']: # get the...

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39.2

11.5

def process_msg(self, msg): """Process messages from the event stream.""" jmsg = json.loads(msg) msgtype = jmsg['MessageType'] msgdata = jmsg['Data'] _LOGGER.debug('New websocket message recieved of type: %s', msgtype) if msgtype == 'Sessions': self._sessions...

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33.777778

12.388889