kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def is_value_from_deprecated_setting(self, setting_name, deprecated_setting_name): """ Helps developers to determine where the settings helper got it's value from when dealing with settings that replace deprecated settings. Returns ``True`` when the new setting (with the name ``setting_...	[ "def", "is_value_from_deprecated_setting", "(", "self", ",", "setting_name", ",", "deprecated_setting_name", ")", ":", "if", "not", "self", ".", "in_defaults", "(", "setting_name", ")", ":", "self", ".", "_raise_invalid_setting_name_error", "(", "setting_name", ")", ...	48.060606	22.727273
def get_field_info(self, field): """ Given an instance of a serializer field, return a dictionary of metadata about it. """ field_info = OrderedDict() serializer = field.parent if isinstance(field, serializers.ManyRelatedField): field_info['type'] = s...	[ "def", "get_field_info", "(", "self", ",", "field", ")", ":", "field_info", "=", "OrderedDict", "(", ")", "serializer", "=", "field", ".", "parent", "if", "isinstance", "(", "field", ",", "serializers", ".", "ManyRelatedField", ")", ":", "field_info", "[", ...	35.366667	22.866667
def isin(self, values, level=None): """ Return a boolean array where the index values are in `values`. Compute boolean array of whether each index value is found in the passed set of values. The length of the returned boolean array matches the length of the index. Param...	[ "def", "isin", "(", "self", ",", "values", ",", "level", "=", "None", ")", ":", "if", "level", "is", "not", "None", ":", "self", ".", "_validate_index_level", "(", "level", ")", "return", "algos", ".", "isin", "(", "self", ",", "values", ")" ]	31.793103	22.114943
def video_loss(top_out, targets, model_hparams, vocab_size, weights_fn): """Compute loss numerator and denominator for one shard of output.""" del vocab_size # unused arg logits = top_out logits = tf.reshape(logits, [-1] + common_layers.shape_list(logits)[2:]) targets = tf.reshape(targets, [-1] + common_laye...	[ "def", "video_loss", "(", "top_out", ",", "targets", ",", "model_hparams", ",", "vocab_size", ",", "weights_fn", ")", ":", "del", "vocab_size", "# unused arg", "logits", "=", "top_out", "logits", "=", "tf", ".", "reshape", "(", "logits", ",", "[", "-", "1"...	43.538462	19.769231
def get_all_used_vars(section): '''Get variables which are variables used by input statement and statements before it''' all_used_vars = set() for statement in section.statements: if statement[0] == '=': all_used_vars \|= accessed_vars('='.join(statement[1:3])) elif statement[0] =...	[ "def", "get_all_used_vars", "(", "section", ")", ":", "all_used_vars", "=", "set", "(", ")", "for", "statement", "in", "section", ".", "statements", ":", "if", "statement", "[", "0", "]", "==", "'='", ":", "all_used_vars", "\|=", "accessed_vars", "(", "'='"...	43.057692	14.019231
def process_inlines(parser, token): """ Searches through the provided content and applies inlines where ever they are found. Syntax:: {% process_inlines entry.body [in template_dir] [as varname] } Examples:: {% process_inlines entry.body %} {% process_inlines entry.body ...	[ "def", "process_inlines", "(", "parser", ",", "token", ")", ":", "args", "=", "token", ".", "split_contents", "(", ")", "if", "not", "len", "(", "args", ")", "in", "(", "2", ",", "4", ",", "6", ")", ":", "raise", "template", ".", "TemplateSyntaxError...	28.439024	24.97561
def blittable_figure_tensor(func, init_func, *tf_pyfunc_kwargs): '''Decorate matplotlib drawing routines with blitting support. This dectorator is meant to decorate functions that return matplotlib figures. The decorated function has to have the following signature def decorated(args, **kwargs) ...	[ "def", "blittable_figure_tensor", "(", "func", ",", "init_func", ",", "", "", "tf_pyfunc_kwargs", ")", ":", "name", "=", "tf_pyfunc_kwargs", ".", "pop", "(", "'name'", ",", "func", ".", "__name__", ")", "assert", "callable", "(", "init_func", ")", ",", "...	41.191781	24.589041
def bundles_list(self, io_handler, name=None): """ Lists the bundles in the framework and their state. Possibility to filter on the bundle name. """ # Head of the table headers = ("ID", "Name", "State", "Version") # Get the bundles bundles = self._context...	[ "def", "bundles_list", "(", "self", ",", "io_handler", ",", "name", "=", "None", ")", ":", "# Head of the table", "headers", "=", "(", "\"ID\"", ",", "\"Name\"", ",", "\"State\"", ",", "\"Version\"", ")", "# Get the bundles", "bundles", "=", "self", ".", "_c...	30.116279	19.325581
def get_cloud_masks(self, X): """ Runs the cloud detection on the input images (dimension n_images x n x m x 10 or n_images x n x m x 13) and returns the raster cloud mask (dimension n_images x n x m). Pixel values equal to 0 indicate pixels classified as clear-sky, while values ...	[ "def", "get_cloud_masks", "(", "self", ",", "X", ")", ":", "cloud_probs", "=", "self", ".", "get_cloud_probability_maps", "(", "X", ")", "return", "self", ".", "get_mask_from_prob", "(", "cloud_probs", ")" ]	46.705882	26.235294
def process(self, request_adu): """ Process request ADU and return response. :param request_adu: A bytearray containing the ADU request. :return: A bytearray containing the response of the ADU request. """ validate_crc(request_adu) return super(RTUServer, self).process(r...	[ "def", "process", "(", "self", ",", "request_adu", ")", ":", "validate_crc", "(", "request_adu", ")", "return", "super", "(", "RTUServer", ",", "self", ")", ".", "process", "(", "request_adu", ")" ]	40.5	16.625
def message(self, do_html=True, custom_email_template=None): """ Returns a tuple with (text_message,html_message) """ context = { 'build': self.build, 'important_metadata': self.important_metadata, 'metadata': self.metadata, 'notification':...	[ "def", "message", "(", "self", ",", "do_html", "=", "True", ",", "custom_email_template", "=", "None", ")", ":", "context", "=", "{", "'build'", ":", "self", ".", "build", ",", "'important_metadata'", ":", "self", ".", "important_metadata", ",", "'metadata'"...	39.307692	16.435897
def get_forces(self, a): """Calculate atomic forces.""" f = np.zeros( [ len(a), 3 ], dtype=float ) for c in self.calcs: f += c.get_forces(a) return f	[ "def", "get_forces", "(", "self", ",", "a", ")", ":", "f", "=", "np", ".", "zeros", "(", "[", "len", "(", "a", ")", ",", "3", "]", ",", "dtype", "=", "float", ")", "for", "c", "in", "self", ".", "calcs", ":", "f", "+=", "c", ".", "get_force...	31.333333	11.666667
def get_applied_migrations(databases=None): """ Returns a dictionary containing lists of all applied migrations where the key is the database alias. """ if not databases: databases = get_capable_databases() else: # We only loop through databases that are listed as "capable" ...	[ "def", "get_applied_migrations", "(", "databases", "=", "None", ")", ":", "if", "not", "databases", ":", "databases", "=", "get_capable_databases", "(", ")", "else", ":", "# We only loop through databases that are listed as \"capable\"", "all_databases", "=", "list", "(...	33.3	18.1
def __contribution_from_parameters(self, parameter_names): """private method get the prior and posterior uncertainty reduction as a result of some parameter becoming perfectly known Parameters ---------- parameter_names : list parameter that are perfectly known ...	[ "def", "__contribution_from_parameters", "(", "self", ",", "parameter_names", ")", ":", "#get the prior and posterior for the base case", "bprior", ",", "bpost", "=", "self", ".", "prior_prediction", ",", "self", ".", "posterior_prediction", "#get the prior and posterior for ...	34.241379	23.931034
def process_sequence(sequence, rules=None, skip_non_vietnamese=True): """\ Convert a key sequence into a Vietnamese string with diacritical marks. Args: rules (optional): see docstring for process_key(). skip_non_vietnamese (optional): see docstring...	[ "def", "process_sequence", "(", "sequence", ",", "rules", "=", "None", ",", "skip_non_vietnamese", "=", "True", ")", ":", "result", "=", "\"\"", "raw", "=", "result", "result_parts", "=", "[", "]", "if", "rules", "is", "None", ":", "rules", "=", "get_tel...	29.378378	17.351351
def app_factory(global_settings, **local_settings): # pylint: disable=W0613 """ Default factory for creating a WSGI application using the everest configurator and root factory. :param dict global_settings: Global settings extracted from an ini file. Not used in this default app factory. :pa...	[ "def", "app_factory", "(", "global_settings", ",", "", "", "local_settings", ")", ":", "# pylint: disable=W0613", "config", "=", "Configurator", "(", ")", "config", ".", "setup_registry", "(", "settings", "=", "local_settings", ",", "root_factory", "=", "RootFac...	44.869565	17.565217
def close(self): """Close socket connection""" if self._writer: self._writer.transport.close() self._writer = None self._reader = None	[ "def", "close", "(", "self", ")", ":", "if", "self", ".", "_writer", ":", "self", ".", "_writer", ".", "transport", ".", "close", "(", ")", "self", ".", "_writer", "=", "None", "self", ".", "_reader", "=", "None" ]	28.833333	11.333333
def _construct_unique_id(self, id_prefix, lines): """Constructs a unique ID for a particular prompt in this case, based on the id_prefix and the lines in the prompt. """ text = [] for line in lines: if isinstance(line, str): text.append(line) ...	[ "def", "_construct_unique_id", "(", "self", ",", "id_prefix", ",", "lines", ")", ":", "text", "=", "[", "]", "for", "line", "in", "lines", ":", "if", "isinstance", "(", "line", ",", "str", ")", ":", "text", ".", "append", "(", "line", ")", "elif", ...	39.818182	8.181818
def mse(x, xhat): """ Calcualte mse between vector or matrix x and xhat """ buf_ = x - xhat np.square(buf_, out=buf_) # square in-place sum_ = np.sum(buf_) sum_ /= x.size # divide in-place return sum_	[ "def", "mse", "(", "x", ",", "xhat", ")", ":", "buf_", "=", "x", "-", "xhat", "np", ".", "square", "(", "buf_", ",", "out", "=", "buf_", ")", "# square in-place", "sum_", "=", "np", ".", "sum", "(", "buf_", ")", "sum_", "/=", "x", ".", "size", ...	31.428571	13.857143
def back_make(dev, cache_mode='writeback', force=False, attach=True, bucket_size=None): ''' Create a backing device for attachment to a set. Because the block size must be the same, a cache set already needs to exist. CLI example: .. code-block:: bash salt '*' bcache.back_make sdc cache_m...	[ "def", "back_make", "(", "dev", ",", "cache_mode", "=", "'writeback'", ",", "force", "=", "False", ",", "attach", "=", "True", ",", "bucket_size", "=", "None", ")", ":", "# pylint: disable=too-many-return-statements", "cache", "=", "uuid", "(", ")", "if", "n...	34.981481	26.240741
def _format_content(self, content): """Returns `content` with consecutive spaces converted to non-break spaces, and linebreak converted into HTML br elements. :param content: text to format :type content: `str` :rtype: `str` """ content = re.sub(r'\n', '<br/>\n'...	[ "def", "_format_content", "(", "self", ",", "content", ")", ":", "content", "=", "re", ".", "sub", "(", "r'\\n'", ",", "'<br/>\\n'", ",", "content", ")", "content", "=", "re", ".", "sub", "(", "r' '", ",", "'  '", ",", "content", ")", "conte...	35.384615	15.846154
def get_timeout(self, callback=None): """ Get the visibility timeout for the queue. :rtype: int :return: The number of seconds as an integer. """ def got_timeout(a): if callable(callback): callback(int(a['VisibilityTimeout'])) ...	[ "def", "get_timeout", "(", "self", ",", "callback", "=", "None", ")", ":", "def", "got_timeout", "(", "a", ")", ":", "if", "callable", "(", "callback", ")", ":", "callback", "(", "int", "(", "a", "[", "'VisibilityTimeout'", "]", ")", ")", "self", "."...	33.818182	12.727273
async def on_step(self, iteration): self.combinedActions = [] """ - depots when low on remaining supply - townhalls contains commandcenter and orbitalcommand - self.units(TYPE).not_ready.amount selects all units of that type, filters incomplete units, and then counts the amount...	[ "async", "def", "on_step", "(", "self", ",", "iteration", ")", ":", "self", ".", "combinedActions", "=", "[", "]", "if", "self", ".", "supply_left", "<", "5", "and", "self", ".", "townhalls", ".", "exists", "and", "self", ".", "supply_used", ">=", "14"...	67.078788	39.769697
def check_index(i): """ Checks and parses an index spec, must be a one-dimensional array [i0, i1, ...] """ i = asarray(i) if (i.ndim > 1) or (size(i) < 1): raise Exception("Index must be one-dimensional and non-singleton") return i	[ "def", "check_index", "(", "i", ")", ":", "i", "=", "asarray", "(", "i", ")", "if", "(", "i", ".", "ndim", ">", "1", ")", "or", "(", "size", "(", "i", ")", "<", "1", ")", ":", "raise", "Exception", "(", "\"Index must be one-dimensional and non-single...	25.6	23
def get_json(self): """Create JSON data for AdapterConfig. :returns: JSON data as follows: { "VIOMManage":{ }, "InitBoot":{ }, "UseVirtualAddresses":{ }, "BootMenuEnable":{ ...	[ "def", "get_json", "(", "self", ")", ":", "viom_table", "=", "self", ".", "get_basic_json", "(", ")", "if", "self", ".", "slots", ":", "viom_table", "[", "'Slots'", "]", "=", "{", "'Slot'", ":", "[", "s", ".", "get_json", "(", ")", "for", "s", "in"...	25.821429	16.928571
def verifies( self, hash, signature ): """Verify that signature is a valid signature of hash. Return True if the signature is valid. """ # From X9.62 J.3.1. G = self.generator n = G.order() r = signature.r s = signature.s if r < 1 or r > n-1: return False if s < 1 or s > n-1: r...	[ "def", "verifies", "(", "self", ",", "hash", ",", "signature", ")", ":", "# From X9.62 J.3.1.", "G", "=", "self", ".", "generator", "n", "=", "G", ".", "order", "(", ")", "r", "=", "signature", ".", "r", "s", "=", "signature", ".", "s", "if", "r", ...	24.947368	14.473684
def main(): """Main function creates the cvloop.functions example notebook.""" notebook = { 'cells': [ { 'cell_type': 'markdown', 'metadata': {}, 'source': [ '# cvloop functions\n\n', 'This notebook shows...	[ "def", "main", "(", ")", ":", "notebook", "=", "{", "'cells'", ":", "[", "{", "'cell_type'", ":", "'markdown'", ",", "'metadata'", ":", "{", "}", ",", "'source'", ":", "[", "'# cvloop functions\\n\\n'", ",", "'This notebook shows an overview over all cvloop '", ...	35.403846	17.673077
def list_repos(owner=None, kwargs): """List repositories in a namespace.""" client = get_repos_api() api_kwargs = {} api_kwargs.update(utils.get_page_kwargs(kwargs)) # pylint: disable=fixme # FIXME: Compatibility code until we work out how to conflate # the overlapping repos_list metho...	[ "def", "list_repos", "(", "owner", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "get_repos_api", "(", ")", "api_kwargs", "=", "{", "}", "api_kwargs", ".", "update", "(", "utils", ".", "get_page_kwargs", "(", "", "", "kwargs", ")", ...	35.142857	16.821429
def status(): '''Display the database migrations status''' for plugin, package, filename in available_migrations(): migration = get_migration(plugin, filename) if migration: status = green(migration['date'].strftime(DATE_FORMAT)) else: status = yellow('Not applied...	[ "def", "status", "(", ")", ":", "for", "plugin", ",", "package", ",", "filename", "in", "available_migrations", "(", ")", ":", "migration", "=", "get_migration", "(", "plugin", ",", "filename", ")", "if", "migration", ":", "status", "=", "green", "(", "m...	39.888889	16.111111
def _build_credentials_tuple(mech, source, user, passwd, extra): """Build and return a mechanism specific credentials tuple. """ user = _unicode(user) if user is not None else None password = passwd if passwd is None else _unicode(passwd) if mech == 'GSSAPI': properties = extra.get('authmech...	[ "def", "_build_credentials_tuple", "(", "mech", ",", "source", ",", "user", ",", "passwd", ",", "extra", ")", ":", "user", "=", "_unicode", "(", "user", ")", "if", "user", "is", "not", "None", "else", "None", "password", "=", "passwd", "if", "passwd", ...	50.545455	18.727273
def favorite_remove(self, post_id): """Remove a post from favorites (Requires login). Parameters: post_id (int): Where post_id is the post id. """ return self._get('favorites/{0}.json'.format(post_id), method='DELETE', auth=True)	[ "def", "favorite_remove", "(", "self", ",", "post_id", ")", ":", "return", "self", ".", "_get", "(", "'favorites/{0}.json'", ".", "format", "(", "post_id", ")", ",", "method", "=", "'DELETE'", ",", "auth", "=", "True", ")" ]	36.5	15.75
def get_variant_label(v_conf): """ Generates name for variant images based settings (by variants sizes). """ if v_conf['MAX_SIZE'][0] is None: return 'h{}'.format(v_conf['MAX_SIZE'][1]) if v_conf['MAX_SIZE'][1] is None: return 'w{}'.format(v_conf['MAX_SIZE'][0]) return '{}x{}'.fo...	[ "def", "get_variant_label", "(", "v_conf", ")", ":", "if", "v_conf", "[", "'MAX_SIZE'", "]", "[", "0", "]", "is", "None", ":", "return", "'h{}'", ".", "format", "(", "v_conf", "[", "'MAX_SIZE'", "]", "[", "1", "]", ")", "if", "v_conf", "[", "'MAX_SIZ...	37.444444	8.333333
def _on_mouse_moved(self, event): """ mouse moved callback """ if event.modifiers() & QtCore.Qt.ControlModifier: cursor = TextHelper(self.editor).word_under_mouse_cursor() if (not self._cursor or cursor.position() != self._cursor.position()): s...	[ "def", "_on_mouse_moved", "(", "self", ",", "event", ")", ":", "if", "event", ".", "modifiers", "(", ")", "&", "QtCore", ".", "Qt", ".", "ControlModifier", ":", "cursor", "=", "TextHelper", "(", "self", ".", "editor", ")", ".", "word_under_mouse_cursor", ...	41.454545	12.727273
def set_bn_eval(m:nn.Module)->None: "Set bn layers in eval mode for all recursive children of `m`." for l in m.children(): if isinstance(l, bn_types) and not next(l.parameters()).requires_grad: l.eval() set_bn_eval(l)	[ "def", "set_bn_eval", "(", "m", ":", "nn", ".", "Module", ")", "->", "None", ":", "for", "l", "in", "m", ".", "children", "(", ")", ":", "if", "isinstance", "(", "l", ",", "bn_types", ")", "and", "not", "next", "(", "l", ".", "parameters", "(", ...	41.333333	20.333333
def makefile(self, sock, mode='r', bufsize=-1): """Return socket file object.""" cls = ( SSLFileobjectStreamReader if 'r' in mode else SSLFileobjectStreamWriter ) if SSL and isinstance(sock, ssl_conn_type): wrapped_socket = cls(sock, mode, ...	[ "def", "makefile", "(", "self", ",", "sock", ",", "mode", "=", "'r'", ",", "bufsize", "=", "-", "1", ")", ":", "cls", "=", "(", "SSLFileobjectStreamReader", "if", "'r'", "in", "mode", "else", "SSLFileobjectStreamWriter", ")", "if", "SSL", "and", "isinsta...	37.733333	13.333333
def _compute_mean(self, C, A1, A2, A3, A4, A5, A6, mag, hypo_depth, rrup, mean, idx): """ Compute mean for subduction interface events, as explained in table 2, page 67. """ mean[idx] = (A1 + A2 * mag + C['C1'] + C['C2'] * (A3 - mag) ** 3 + ...	[ "def", "_compute_mean", "(", "self", ",", "C", ",", "A1", ",", "A2", ",", "A3", ",", "A4", ",", "A5", ",", "A6", ",", "mag", ",", "hypo_depth", ",", "rrup", ",", "mean", ",", "idx", ")", ":", "mean", "[", "idx", "]", "=", "(", "A1", "+", "A...	45.222222	17.888889
def in_project_directory() -> bool: """ Returns whether or not the current working directory is a Cauldron project directory, which contains a cauldron.json file. """ current_directory = os.path.realpath(os.curdir) project_path = os.path.join(current_directory, 'cauldron.json') return os.pat...	[ "def", "in_project_directory", "(", ")", "->", "bool", ":", "current_directory", "=", "os", ".", "path", ".", "realpath", "(", "os", ".", "curdir", ")", "project_path", "=", "os", ".", "path", ".", "join", "(", "current_directory", ",", "'cauldron.json'", ...	46	15.5
def num_in_memory(self): """Get number of values in memory.""" n = len(self._data) - 1 while n >= 0: if isinstance(self._data[n], _TensorValueDiscarded): break n -= 1 return len(self._data) - 1 - n	[ "def", "num_in_memory", "(", "self", ")", ":", "n", "=", "len", "(", "self", ".", "_data", ")", "-", "1", "while", "n", ">=", "0", ":", "if", "isinstance", "(", "self", ".", "_data", "[", "n", "]", ",", "_TensorValueDiscarded", ")", ":", "break", ...	28.25	16.375
def _ParseHeader(self, parser_mediator, structure): """Parses a log header. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. structure (pyparsing.ParseResults): structure of tokens derived from a line ...	[ "def", "_ParseHeader", "(", "self", ",", "parser_mediator", ",", "structure", ")", ":", "_", ",", "month", ",", "day", ",", "hours", ",", "minutes", ",", "seconds", ",", "year", "=", "structure", ".", "date_time", "month", "=", "timelib", ".", "MONTH_DIC...	32.111111	20.6
def is_a_string(var, allow_none=False): """ Returns True if var is a string (ascii or unicode) Result py-2 py-3 ----------------- ----- ----- b'bytes literal' True False 'string literal' True True u'unicode literal' True True Also returns True i...	[ "def", "is_a_string", "(", "var", ",", "allow_none", "=", "False", ")", ":", "return", "isinstance", "(", "var", ",", "six", ".", "string_types", ")", "or", "(", "var", "is", "None", "and", "allow_none", ")" ]	37.833333	14.75
def timetree_likelihood(self): ''' Return the likelihood of the data given the current branch length in the tree ''' LH = 0 for node in self.tree.find_clades(order='preorder'): # sum the likelihood contributions of all branches if node.up is None: # root node ...	[ "def", "timetree_likelihood", "(", "self", ")", ":", "LH", "=", "0", "for", "node", "in", "self", ".", "tree", ".", "find_clades", "(", "order", "=", "'preorder'", ")", ":", "# sum the likelihood contributions of all branches", "if", "node", ".", "up", "is", ...	41.642857	29.214286
def _make_parameters(self): """Converts a list of Parameters into DEAP format.""" self.value_means = [] self.value_ranges = [] self.arrangement = [] self.variable_parameters = [] current_var = 0 for parameter in self.parameters: if parameter.type == Pa...	[ "def", "_make_parameters", "(", "self", ")", ":", "self", ".", "value_means", "=", "[", "]", "self", ".", "value_ranges", "=", "[", "]", "self", ".", "arrangement", "=", "[", "]", "self", ".", "variable_parameters", "=", "[", "]", "current_var", "=", "...	46.076923	14.884615
def list_envs(): """List all environments""" for env in lib.get_environments(): margin_left = lib.get_margin(len(env['name'])) print("{0}{1}{2}".format( env['name'], margin_left, env.get('description', '(no description)')))	[ "def", "list_envs", "(", ")", ":", "for", "env", "in", "lib", ".", "get_environments", "(", ")", ":", "margin_left", "=", "lib", ".", "get_margin", "(", "len", "(", "env", "[", "'name'", "]", ")", ")", "print", "(", "\"{0}{1}{2}\"", ".", "format", "(...	37.857143	9.428571
def get_occupation_updates(self, offset=0, count=1000): """ Returns <count> occupation updates from <offset>. An occupation update is a quadrupel (pc, source, timestamp, occupation) """ ret = [] c = self.conn.cursor() for pc_id, source_id, datetime, ...	[ "def", "get_occupation_updates", "(", "self", ",", "offset", "=", "0", ",", "count", "=", "1000", ")", ":", "ret", "=", "[", "]", "c", "=", "self", ".", "conn", ".", "cursor", "(", ")", "for", "pc_id", ",", "source_id", ",", "datetime", ",", "occup...	41	12.352941
def print_help(self, prog_name, subcommand): """ Prints parser's help. :param prog_name: vcs main script name :param subcommand: command name """ parser = self.get_parser(prog_name, subcommand) parser.print_help()	[ "def", "print_help", "(", "self", ",", "prog_name", ",", "subcommand", ")", ":", "parser", "=", "self", ".", "get_parser", "(", "prog_name", ",", "subcommand", ")", "parser", ".", "print_help", "(", ")" ]	29.111111	10
def _flip_feature(self, feature, parent_len): '''Adjust a feature's location when flipping DNA. :param feature: The feature to flip. :type feature: coral.Feature :param parent_len: The length of the sequence to which the feature belongs. :type parent_len: int ''' copy = feature.copy() ...	[ "def", "_flip_feature", "(", "self", ",", "feature", ",", "parent_len", ")", ":", "copy", "=", "feature", ".", "copy", "(", ")", "# Put on the other strand", "if", "copy", ".", "strand", "==", "0", ":", "copy", ".", "strand", "=", "1", "else", ":", "co...	31.25	18.25
def set_objective(self, expression): """Set linear objective of problem""" if isinstance(expression, numbers.Number): # Allow expressions with no variables as objective, # represented as a number expression = Expression() self._p.set_linear_objective( ...	[ "def", "set_objective", "(", "self", ",", "expression", ")", ":", "if", "isinstance", "(", "expression", ",", "numbers", ".", "Number", ")", ":", "# Allow expressions with no variables as objective,", "# represented as a number", "expression", "=", "Expression", "(", ...	37.090909	13.545455
def mine_urls(urls, params=None, callback=None, **kwargs): """Concurrently retrieve URLs. :param urls: A set of URLs to concurrently retrieve. :type urls: iterable :param params: (optional) The URL parameters to send with each request. :type params: dict :param callback: (o...	[ "def", "mine_urls", "(", "urls", ",", "params", "=", "None", ",", "callback", "=", "None", ",", "", "", "kwargs", ")", ":", "miner", "=", "Miner", "(", "", "", "kwargs", ")", "try", ":", "miner", ".", "loop", ".", "add_signal_handler", "(", "si...	33.904762	23.952381
def _reverse_dependencies(self, cache_keys): """ Returns a lookup table of reverse dependencies for all the given cache keys. Example input: [('pep8', '1.5.7'), ('flake8', '2.4.0'), ('mccabe', '0.3'), ('pyflakes', '0.8.1')] Example ou...	[ "def", "_reverse_dependencies", "(", "self", ",", "cache_keys", ")", ":", "# First, collect all the dependencies into a sequence of (parent, child) tuples, like [('flake8', 'pep8'),", "# ('flake8', 'mccabe'), ...]", "return", "lookup_table", "(", "(", "key_from_req", "(", "Requiremen...	34.375	21.875
def getConfig(option, serverEndpoint=ServerEndpoint, verbose=Verbose, tikaServerJar=TikaServerJar, responseMimeType='application/json', services={'mime-types': '/mime-types', 'detectors': '/detectors', 'parsers': '/parsers/details'}): ''' Get the configuration of the Tika Server (parsers, detector...	[ "def", "getConfig", "(", "option", ",", "serverEndpoint", "=", "ServerEndpoint", ",", "verbose", "=", "Verbose", ",", "tikaServerJar", "=", "TikaServerJar", ",", "responseMimeType", "=", "'application/json'", ",", "services", "=", "{", "'mime-types'", ":", "'/mime...	47.117647	34.058824
def nbytes_stored(self): """The total number of stored bytes of data for the array. This includes storage required for configuration metadata and user attributes.""" m = getsize(self._store, self._path) if self._chunk_store is None: return m else: ...	[ "def", "nbytes_stored", "(", "self", ")", ":", "m", "=", "getsize", "(", "self", ".", "_store", ",", "self", ".", "_path", ")", "if", "self", ".", "_chunk_store", "is", "None", ":", "return", "m", "else", ":", "n", "=", "getsize", "(", "self", ".",...	34.923077	13.307692
def global_confirm(question, default=True): """Shows a confirmation that applies to all hosts by temporarily disabling parallel execution in Fabric """ if env.abort_on_prompts: return True original_parallel = env.parallel env.parallel = False result = confirm(question, default) e...	[ "def", "global_confirm", "(", "question", ",", "default", "=", "True", ")", ":", "if", "env", ".", "abort_on_prompts", ":", "return", "True", "original_parallel", "=", "env", ".", "parallel", "env", ".", "parallel", "=", "False", "result", "=", "confirm", ...	32.636364	9.181818
def accepts(**schemas): """Create a decorator for validating function parameters. Example:: @accepts(a="number", body={"+field_ids": [int], "is_ok": bool}) def f(a, body): print (a, body["field_ids"], body.get("is_ok")) :param schemas: The schema for validating a given paramet...	[ "def", "accepts", "(", "", "", "schemas", ")", ":", "validate", "=", "parse", "(", "schemas", ")", ".", "validate", "@", "decorator", "def", "validating", "(", "func", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "validate", "(", "inspect",...	30.277778	21.166667
def _set_op(self, node): """ Translate a set operator node into SQLQuery. :param node: a treebrd node :return: a SQLQuery object for the tree rooted at node """ select_block = str(node.attributes) from_block = '({left} {operator} ALL {right}) AS {name}'.format( ...	[ "def", "_set_op", "(", "self", ",", "node", ")", ":", "select_block", "=", "str", "(", "node", ".", "attributes", ")", "from_block", "=", "'({left} {operator} ALL {right}) AS {name}'", ".", "format", "(", "left", "=", "self", ".", "translate", "(", "node", "...	47.75	16.083333
def _get_file_content(source): """Return a tuple, each value being a line of the source file. Remove empty lines and comments (lines starting with a '#'). """ filepath = os.path.join('siglists', source + '.txt') lines = [] with resource_stream(__name__, filepath) as f: for i, line in ...	[ "def", "_get_file_content", "(", "source", ")", ":", "filepath", "=", "os", ".", "path", ".", "join", "(", "'siglists'", ",", "source", "+", "'.txt'", ")", "lines", "=", "[", "]", "with", "resource_stream", "(", "__name__", ",", "filepath", ")", "as", ...	29.15625	18.875
def rmon_alarm_entry_alarm_rising_event_index(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") rmon = ET.SubElement(config, "rmon", xmlns="urn:brocade.com:mgmt:brocade-rmon") alarm_entry = ET.SubElement(rmon, "alarm-entry") alarm_index_key = ET.Su...	[ "def", "rmon_alarm_entry_alarm_rising_event_index", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "rmon", "=", "ET", ".", "SubElement", "(", "config", ",", "\"rmon\"", ",", "xmlns", "=", "\"urn...	50.846154	21.846154
def moments_XXXY(X, Y, remove_mean=False, symmetrize=False, weights=None, modify_data=False, sparse_mode='auto', sparse_tol=0.0, column_selection=None, diag_only=False): """ Computes the first two unnormalized moments of X and Y If symmetrize is False, computes .. math: ...	[ "def", "moments_XXXY", "(", "X", ",", "Y", ",", "remove_mean", "=", "False", ",", "symmetrize", "=", "False", ",", "weights", "=", "None", ",", "modify_data", "=", "False", ",", "sparse_mode", "=", "'auto'", ",", "sparse_tol", "=", "0.0", ",", "column_se...	47.255319	27.29078
def from_file(filename="feff.inp"): """ Creates a Feff_tag dictionary from a PARAMETER or feff.inp file. Args: filename: Filename for either PARAMETER or feff.inp file Returns: Feff_tag object """ with zopen(filename, "rt") as f: line...	[ "def", "from_file", "(", "filename", "=", "\"feff.inp\"", ")", ":", "with", "zopen", "(", "filename", ",", "\"rt\"", ")", "as", "f", ":", "lines", "=", "list", "(", "clean_lines", "(", "f", ".", "readlines", "(", ")", ")", ")", "params", "=", "{", ...	36.695652	16.478261
def run(self): """Run the process.""" environment = os.environ.copy() # necessary for reading from processes that don't flush # stdout automatically environment["PYTHONUNBUFFERED"] = "1" self.proc = Popen(self.command, env=environment, stdout=PIPE, stderr=PIPE) Pr...	[ "def", "run", "(", "self", ")", ":", "environment", "=", "os", ".", "environ", ".", "copy", "(", ")", "# necessary for reading from processes that don't flush", "# stdout automatically", "environment", "[", "\"PYTHONUNBUFFERED\"", "]", "=", "\"1\"", "self", ".", "pr...	42.625	13.625
def isEnabled(self): """ Returns whether or not this connection is enabled. :sa disableWithLayer :return <bool> """ if self._disableWithLayer and self._layer: lenabled = self._layer.isEnabled() elif self._inputNode and self._o...	[ "def", "isEnabled", "(", "self", ")", ":", "if", "self", ".", "_disableWithLayer", "and", "self", ".", "_layer", ":", "lenabled", "=", "self", ".", "_layer", ".", "isEnabled", "(", ")", "elif", "self", ".", "_inputNode", "and", "self", ".", "_outputNode"...	30.25	17.125
def replace(needle, with_=None, in_=None): """Replace occurrences of string(s) with other string(s) in (a) string(s). Unlike the built in :meth:`str.replace` method, this function provides clean API that clearly distinguishes the "needle" (string to replace), the replacement string, and the target stri...	[ "def", "replace", "(", "needle", ",", "with_", "=", "None", ",", "in_", "=", "None", ")", ":", "if", "needle", "is", "None", ":", "raise", "TypeError", "(", "\"replacement needle cannot be None\"", ")", "if", "not", "needle", ":", "raise", "ValueError", "(...	38	21.945455
def _set_capabilities(self, v, load=False): """ Setter method for capabilities, mapped from YANG variable /capabilities (container) If this variable is read-only (config: false) in the source YANG file, then _set_capabilities is considered as a private method. Backends looking to populate this varia...	[ "def", "_set_capabilities", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "b...	75.818182	34.727273
def complete(self, query, current_url): """Called to interpret the server's response to an OpenID request. It is called in step 4 of the flow described in the consumer overview. @param query: A dictionary of the query parameters for this HTTP request. @param current...	[ "def", "complete", "(", "self", ",", "query", ",", "current_url", ")", ":", "endpoint", "=", "self", ".", "session", ".", "get", "(", "self", ".", "_token_key", ")", "message", "=", "Message", ".", "fromPostArgs", "(", "query", ")", "response", "=", "s...	39.543478	22.630435
def decide(self, accepts, context_aware=False): """ Returns what (mimetype,format) the client wants to receive Parses the given Accept header and picks the best one that we know how to output Returns (mimetype, format) An empty Accept will default to rdf+xml An Accept with / use rdf+xm...	[ "def", "decide", "(", "self", ",", "accepts", ",", "context_aware", "=", "False", ")", ":", "mimetype", "=", "self", ".", "decide_mimetype", "(", "accepts", ",", "context_aware", ")", "# return what format to serialize as", "if", "mimetype", "is", "not", "None",...	43.588235	14.588235
def execute(opts, data, func, args, kwargs): ''' Splay a salt function call execution time across minions over a number of seconds (default: 300) .. note:: You probably want to use --async here and look up the job results later. If you're dead set on getting the output from the CLI co...	[ "def", "execute", "(", "opts", ",", "data", ",", "func", ",", "args", ",", "kwargs", ")", ":", "if", "'executor_opts'", "in", "data", "and", "'splaytime'", "in", "data", "[", "'executor_opts'", "]", ":", "splaytime", "=", "data", "[", "'executor_opts'", ...	39.25	29.361111
def get_matrix(self): """Return a copy of the current transformation matrix (CTM).""" matrix = Matrix() cairo.cairo_get_matrix(self._pointer, matrix._pointer) self._check_status() return matrix	[ "def", "get_matrix", "(", "self", ")", ":", "matrix", "=", "Matrix", "(", ")", "cairo", ".", "cairo_get_matrix", "(", "self", ".", "_pointer", ",", "matrix", ".", "_pointer", ")", "self", ".", "_check_status", "(", ")", "return", "matrix" ]	38	14.5
def add_logger(self, cb, level='NORMAL', filters='ALL'): '''Add a callback to receive log events from this component. @param cb The callback function to receive log events. It must have the signature cb(name, time, source, level, message), where name is the name of the component...	[ "def", "add_logger", "(", "self", ",", "cb", ",", "level", "=", "'NORMAL'", ",", "filters", "=", "'ALL'", ")", ":", "with", "self", ".", "_mutex", ":", "obs", "=", "sdo", ".", "RTCLogger", "(", "self", ",", "cb", ")", "uuid_val", "=", "uuid", ".", ...	48.53125	19.65625
def rank_within_group_by(self, group_by_cols, sort_cols, ascending=[], new_col_name="New_Rank_column", sort_cols_sorted=False): """ This function will add a new column rank where the ranking is produced as follows: 1. sorts the H2OFrame by columns sorted in by columns specified in group_by_cols...	[ "def", "rank_within_group_by", "(", "self", ",", "group_by_cols", ",", "sort_cols", ",", "ascending", "=", "[", "]", ",", "new_col_name", "=", "\"New_Rank_column\"", ",", "sort_cols_sorted", "=", "False", ")", ":", "assert_is_type", "(", "group_by_cols", ",", "s...	77.735537	48.132231
def cmd(self, tgt, fun, arg=(), timeout=None, tgt_type='glob', ret='', jid='', full_return=False, kwarg=None, **kwargs): ''' Synchronously execute a command on targeted minions ...	[ "def", "cmd", "(", "self", ",", "tgt", ",", "fun", ",", "arg", "=", "(", ")", ",", "timeout", "=", "None", ",", "tgt_type", "=", "'glob'", ",", "ret", "=", "''", ",", "jid", "=", "''", ",", "full_return", "=", "False", ",", "kwarg", "=", "None"...	37.218543	21.827815
def estimate_parameters_rippe( self, max_dist_kb, size_bin_kb, display_graph ): """ estimation by least square optimization of Rippe parameters on the experimental data :param max_dist_kb: :param size_bin_kb: """ logger.info("estimation of the paramete...	[ "def", "estimate_parameters_rippe", "(", "self", ",", "max_dist_kb", ",", "size_bin_kb", ",", "display_graph", ")", ":", "logger", ".", "info", "(", "\"estimation of the parameters of the model\"", ")", "self", ".", "bins", "=", "np", ".", "arange", "(", "size_bin...	41.965318	17.433526
def cd(self, remote): """ Change working directory on server """ try: self.conn.cwd(remote) except Exception: return False else: return self.pwd()	[ "def", "cd", "(", "self", ",", "remote", ")", ":", "try", ":", "self", ".", "conn", ".", "cwd", "(", "remote", ")", "except", "Exception", ":", "return", "False", "else", ":", "return", "self", ".", "pwd", "(", ")" ]	25.875	15.375
def _generateMetricSpecs(options): """ Generates the Metrics for a given InferenceType Parameters: ------------------------------------------------------------------------- options: ExpGenerator options retval: (metricsList, optimizeMetricLabel) metricsList: list of metric string names ...	[ "def", "_generateMetricSpecs", "(", "options", ")", ":", "inferenceType", "=", "options", "[", "'inferenceType'", "]", "inferenceArgs", "=", "options", "[", "'inferenceArgs'", "]", "predictionSteps", "=", "inferenceArgs", "[", "'predictionSteps'", "]", "metricWindow",...	45.472906	22.20197
def account_id(self, value): """The account_id property. Args: value (string). the property value. """ if value == self._defaults['ai.user.accountId'] and 'ai.user.accountId' in self._values: del self._values['ai.user.accountId'] else: ...	[ "def", "account_id", "(", "self", ",", "value", ")", ":", "if", "value", "==", "self", ".", "_defaults", "[", "'ai.user.accountId'", "]", "and", "'ai.user.accountId'", "in", "self", ".", "_values", ":", "del", "self", ".", "_values", "[", "'ai.user.accountId...	35.3	18.3
def latitude(self, latitude): """Setter for latiutde.""" if not (-90 <= latitude <= 90): raise ValueError('latitude was {}, but has to be in [-90, 90]' .format(latitude)) self._latitude = latitude	[ "def", "latitude", "(", "self", ",", "latitude", ")", ":", "if", "not", "(", "-", "90", "<=", "latitude", "<=", "90", ")", ":", "raise", "ValueError", "(", "'latitude was {}, but has to be in [-90, 90]'", ".", "format", "(", "latitude", ")", ")", "self", "...	42.666667	10
def _init_iter(self, X, y, is_train): """Initialize the iterator given input.""" if isinstance(X, (np.ndarray, nd.NDArray)): if y is None: if is_train: raise ValueError('y must be specified when X is numpy.ndarray') else: ...	[ "def", "_init_iter", "(", "self", ",", "X", ",", "y", ",", "is_train", ")", ":", "if", "isinstance", "(", "X", ",", "(", "np", ".", "ndarray", ",", "nd", ".", "NDArray", ")", ")", ":", "if", "y", "is", "None", ":", "if", "is_train", ":", "raise...	51.25	22
def ginga_to_matplotlib_cmap(cm, name=None): """Convert Ginga colormap to matplotlib's.""" if name is None: name = cm.name from matplotlib.colors import ListedColormap carr = np.asarray(cm.clst) mpl_cm = ListedColormap(carr, name=name, N=len(carr)) return mpl_cm	[ "def", "ginga_to_matplotlib_cmap", "(", "cm", ",", "name", "=", "None", ")", ":", "if", "name", "is", "None", ":", "name", "=", "cm", ".", "name", "from", "matplotlib", ".", "colors", "import", "ListedColormap", "carr", "=", "np", ".", "asarray", "(", ...	35.875	12.5
def apply(self, fn, dtype=None, skip_na=True, seed=None): """ apply(fn, dtype=None, skip_na=True, seed=None) Transform each element of the SArray by a given function. The result SArray is of type ``dtype``. ``fn`` should be a function that returns exactly one value which can be ...	[ "def", "apply", "(", "self", ",", "fn", ",", "dtype", "=", "None", ",", "skip_na", "=", "True", ",", "seed", "=", "None", ")", ":", "assert", "callable", "(", "fn", ")", ",", "\"Input function must be callable.\"", "dryrun", "=", "[", "fn", "(", "i", ...	33.15	24.85
def get_jobs(self, project, params): """ Gets jobs from project, filtered by parameters :param project: project (repository name) to query data for :param params: keyword arguments to filter results """ return self._get_json_list(self.JOBS_ENDPOINT, project, params)	[ "def", "get_jobs", "(", "self", ",", "project", ",", "", "", "params", ")", ":", "return", "self", ".", "_get_json_list", "(", "self", ".", "JOBS_ENDPOINT", ",", "project", ",", "", "", "params", ")" ]	39	16.75
def hello_rivescript(): """Receive an inbound SMS and send a reply from RiveScript.""" from_number = request.values.get("From", "unknown") message = request.values.get("Body") reply = "(Internal error)" # Get a reply from RiveScript. if message: reply = bot.reply(from_number,...	[ "def", "hello_rivescript", "(", ")", ":", "from_number", "=", "request", ".", "values", ".", "get", "(", "\"From\"", ",", "\"unknown\"", ")", "message", "=", "request", ".", "values", ".", "get", "(", "\"Body\"", ")", "reply", "=", "\"(Internal error)\"", ...	28.066667	17.133333
def delete(Bucket, MFA=None, RequestPayer=None, Force=False, region=None, key=None, keyid=None, profile=None): ''' Given a bucket name, delete it, optionally emptying it first. Returns {deleted: true} if the bucket was deleted and returns {deleted: false} if the bucket was not deleted. ...	[ "def", "delete", "(", "Bucket", ",", "MFA", "=", "None", ",", "RequestPayer", "=", "None", ",", "Force", "=", "False", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "try", "...	32.72	26.4
def _process_tensor_event(self, event, thresholds): """Converts a TensorEvent into a dict that encapsulates information on it. Args: event: The TensorEvent to convert. thresholds: An array of floats that ranges from 0 to 1 (in that direction and inclusive of 0 and 1). Returns: A ...	[ "def", "_process_tensor_event", "(", "self", ",", "event", ",", "thresholds", ")", ":", "return", "self", ".", "_make_pr_entry", "(", "event", ".", "step", ",", "event", ".", "wall_time", ",", "tensor_util", ".", "make_ndarray", "(", "event", ".", "tensor_pr...	32.0625	17.5
def convert(self, inp): """Converts a string representation of some quantity of units into a quantities object. Args: inp (str): A textual representation of some quantity of units, e.g., "fifty kilograms". Returns: A quantities object representin...	[ "def", "convert", "(", "self", ",", "inp", ")", ":", "inp", "=", "self", ".", "_preprocess", "(", "inp", ")", "n", "=", "NumberService", "(", ")", ".", "longestNumber", "(", "inp", ")", "units", "=", "self", ".", "extractUnits", "(", "inp", ")", "#...	29.681818	19.818182
def eth_getStorageAt(self, address, position): """Get account storage data at position. :param address: :param position: :return: """ account = self.reader._get_account(address) return _encode_hex( utils.zpad(utils.encode_int(account.get_storage_data(...	[ "def", "eth_getStorageAt", "(", "self", ",", "address", ",", "position", ")", ":", "account", "=", "self", ".", "reader", ".", "_get_account", "(", "address", ")", "return", "_encode_hex", "(", "utils", ".", "zpad", "(", "utils", ".", "encode_int", "(", ...	30.454545	18
def generate_transition_matrix(g, seed=None): """Generates a random transition matrix for the graph ``g``. Parameters ---------- g : :any:`networkx.DiGraph`, :class:`numpy.ndarray`, dict, etc. Any object that :any:`DiGraph<networkx.DiGraph>` accepts. seed : int (optional) An integer...	[ "def", "generate_transition_matrix", "(", "g", ",", "seed", "=", "None", ")", ":", "g", "=", "_test_graph", "(", "g", ")", "if", "isinstance", "(", "seed", ",", "numbers", ".", "Integral", ")", ":", "np", ".", "random", ".", "seed", "(", "seed", ")",...	29.975	20.7
async def _send_rtcp_nack(self, media_ssrc, lost): """ Send an RTCP packet to report missing RTP packets. """ if self.__rtcp_ssrc is not None: packet = RtcpRtpfbPacket( fmt=RTCP_RTPFB_NACK, ssrc=self.__rtcp_ssrc, media_ssrc=media_ssrc) packet.lost ...	[ "async", "def", "_send_rtcp_nack", "(", "self", ",", "media_ssrc", ",", "lost", ")", ":", "if", "self", ".", "__rtcp_ssrc", "is", "not", "None", ":", "packet", "=", "RtcpRtpfbPacket", "(", "fmt", "=", "RTCP_RTPFB_NACK", ",", "ssrc", "=", "self", ".", "__...	40	9.333333
def searchForMessageIDs(self, query, offset=0, limit=5, thread_id=None): """ Find and get message IDs by query :param query: Text to search for :param offset: Number of messages to skip :param limit: Max. number of messages to retrieve :param thread_id: User/Group ID to ...	[ "def", "searchForMessageIDs", "(", "self", ",", "query", ",", "offset", "=", "0", ",", "limit", "=", "5", ",", "thread_id", "=", "None", ")", ":", "thread_id", ",", "thread_type", "=", "self", ".", "_getThread", "(", "thread_id", ",", "None", ")", "dat...	35.419355	17.290323
def calculate_size(username, password, uuid, owner_uuid, is_owner_connection, client_type, serialization_version, client_hazelcast_version): """ Calculates the request payload size""" data_size = 0 data_size += calculate_size_str(username) data_size += calculate_size_str(password) data_size += BOOLE...	[ "def", "calculate_size", "(", "username", ",", "password", ",", "uuid", ",", "owner_uuid", ",", "is_owner_connection", ",", "client_type", ",", "serialization_version", ",", "client_hazelcast_version", ")", ":", "data_size", "=", "0", "data_size", "+=", "calculate_s...	45.0625	14.6875
def calculate_subgraph_edge_overlap( graph: BELGraph, annotation: str = 'Subgraph' ) -> Tuple[ Mapping[str, EdgeSet], Mapping[str, Mapping[str, EdgeSet]], Mapping[str, Mapping[str, EdgeSet]], Mapping[str, Mapping[str, float]], ]: """Build a DatafFame to show the overlap between diffe...	[ "def", "calculate_subgraph_edge_overlap", "(", "graph", ":", "BELGraph", ",", "annotation", ":", "str", "=", "'Subgraph'", ")", "->", "Tuple", "[", "Mapping", "[", "str", ",", "EdgeSet", "]", ",", "Mapping", "[", "str", ",", "Mapping", "[", "str", ",", "...	38.108108	21.216216
def _trapped_signals(self, client): """A contextmanager that handles SIGINT (control-c) and SIGQUIT (control-\\) remotely.""" signal_handler = PailgunClientSignalHandler( client, timeout=self._bootstrap_options.for_global_scope().pantsd_pailgun_quit_timeout) with ExceptionSink.trapped_signals(si...	[ "def", "_trapped_signals", "(", "self", ",", "client", ")", ":", "signal_handler", "=", "PailgunClientSignalHandler", "(", "client", ",", "timeout", "=", "self", ".", "_bootstrap_options", ".", "for_global_scope", "(", ")", ".", "pantsd_pailgun_quit_timeout", ")", ...	48.571429	18.428571
def _raise_decomposition_errors(uvw, antenna1, antenna2, chunks, ant_uvw, max_err): """ Raises informative exception for an invalid decomposition """ start = 0 problem_str = [] for ci, chunk in enumerate(chunks): end = start + chunk ant1 = antenna1[sta...	[ "def", "_raise_decomposition_errors", "(", "uvw", ",", "antenna1", ",", "antenna2", ",", "chunks", ",", "ant_uvw", ",", "max_err", ")", ":", "start", "=", "0", "problem_str", "=", "[", "]", "for", "ci", ",", "chunk", "in", "enumerate", "(", "chunks", ")"...	32.38	19.76
def get_origins(self, account_id, *kwargs): """Retrieves list of origin pull mappings for a specified CDN account. :param account_id int: the numeric ID associated with the CDN account. :param dict \\\\*kwargs: additional arguments to include in the object mask...	[ "def", "get_origins", "(", "self", ",", "account_id", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "account", ".", "getOriginPullMappingInformation", "(", "id", "=", "account_id", ",", "", "", "kwargs", ")" ]	47	22.7
def posterior_chromatogram_hypotheses_fast(experiment, prior_chrom_null): """ Compute posterior probabilities for each chromatogram For each chromatogram (each group_id / peptide precursor), all hypothesis of all peaks being correct (and all others false) as well as the h0 (all peaks are false) are com...	[ "def", "posterior_chromatogram_hypotheses_fast", "(", "experiment", ",", "prior_chrom_null", ")", ":", "tg_ids", "=", "experiment", ".", "df", ".", "tg_num_id", ".", "values", "pp_values", "=", "1", "-", "experiment", ".", "df", "[", "\"pep\"", "]", ".", "valu...	36.222222	24.333333
def run_tasks(self): ''' Runs all assigned task in separate green threads. If the task should not be run, schedule it ''' pool = Pool(len(self.tasks)) for task in self.tasks: # Launch a green thread to schedule the task # A task will be managed by 2 green ...	[ "def", "run_tasks", "(", "self", ")", ":", "pool", "=", "Pool", "(", "len", "(", "self", ".", "tasks", ")", ")", "for", "task", "in", "self", ".", "tasks", ":", "# Launch a green thread to schedule the task", "# A task will be managed by 2 green thread: execution th...	41.6	24.4
def forward_on_instances(self, instances: List[Instance]) -> List[Dict[str, numpy.ndarray]]: """ Takes a list of :class:`~allennlp.data.instance.Instance`s, converts that text into arrays using this model's :class:`Vocabulary`, passes those arrays through :f...	[ "def", "forward_on_instances", "(", "self", ",", "instances", ":", "List", "[", "Instance", "]", ")", "->", "List", "[", "Dict", "[", "str", ",", "numpy", ".", "ndarray", "]", "]", ":", "batch_size", "=", "len", "(", "instances", ")", "with", "torch", ...	50.191489	24.446809
def get_ticks_from_axis_limits(self, multiple=1): """ Taking self._axis_limits and self._boundary_scale get the scaled ticks for all three axes and store them in self._ticks under the keys 'b' for bottom, 'l' for left and 'r' for right axes. """ for k in ['b', 'l', 'r']: ...	[ "def", "get_ticks_from_axis_limits", "(", "self", ",", "multiple", "=", "1", ")", ":", "for", "k", "in", "[", "'b'", ",", "'l'", ",", "'r'", "]", ":", "self", ".", "_ticks", "[", "k", "]", "=", "numpy", ".", "linspace", "(", "self", ".", "_axis_lim...	43.083333	12.083333
def update(self, settings): """ Update object attributes from given settings Args: settings (dict): Dictionnary of elements to update settings. Returns: dict: Dictionnary of all current saved settings. """ settings = self.clean(settings) ...	[ "def", "update", "(", "self", ",", "settings", ")", ":", "settings", "=", "self", ".", "clean", "(", "settings", ")", "# Update internal dict", "self", ".", "_settings", ".", "update", "(", "settings", ")", "# Push every setting items as class object attributes", ...	24.75	20.85
def process_task(f): """Decorator to (optionally) run function in a process.""" sig = inspect.signature(f) @wraps(f) def wrapper(args, kwargs): # get bound arguments for call ba = sig.bind_partial(args, **kwargs) # when process is specified, remove from args and use to execu...	[ "def", "process_task", "(", "f", ")", ":", "sig", "=", "inspect", ".", "signature", "(", "f", ")", "@", "wraps", "(", "f", ")", "def", "wrapper", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "# get bound arguments for call", "ba", "=", "sig",...	38	15.9
def get_resource(self, resource_wrapper=None): """ Returns a ``Resource`` instance. :param resource_wrapper: A Resource subclass. :return: A ``Resource`` instance. :raises PoolEmptyError: If attempt to get resource fails or times out. """ rtracker = ...	[ "def", "get_resource", "(", "self", ",", "resource_wrapper", "=", "None", ")", ":", "rtracker", "=", "None", "if", "resource_wrapper", "is", "None", ":", "resource_wrapper", "=", "self", ".", "_resource_wrapper", "if", "self", ".", "empty", "(", ")", ":", ...	33.283333	19.916667
def move_tmp_log(logger): """ Move the temporary log file to the MultiQC data directory if it exists. """ try: # https://stackoverflow.com/questions/15435652/python-does-not-release-filehandles-to-logfile logging.shutdown() shutil.move(log_tmp_fn, os.path.join(config.data_dir, 'mult...	[ "def", "move_tmp_log", "(", "logger", ")", ":", "try", ":", "# https://stackoverflow.com/questions/15435652/python-does-not-release-filehandles-to-logfile", "logging", ".", "shutdown", "(", ")", "shutil", ".", "move", "(", "log_tmp_fn", ",", "os", ".", "path", ".", "j...	39.272727	22.181818
def geocoding(ctx, query, forward, include_headers, lat, lon, place_type, output, dataset, country, bbox, features, limit): """This command returns places matching an address (forward mode) or places matching coordinates (reverse mode). In forward (the default) mode the query argument shall b...	[ "def", "geocoding", "(", "ctx", ",", "query", ",", "forward", ",", "include_headers", ",", "lat", ",", "lon", ",", "place_type", ",", "output", ",", "dataset", ",", "country", ",", "bbox", ",", "features", ",", "limit", ")", ":", "access_token", "=", "...	38.114286	19.785714

def is_value_from_deprecated_setting(self, setting_name, deprecated_setting_name): """ Helps developers to determine where the settings helper got it's value from when dealing with settings that replace deprecated settings. Returns ``True`` when the new setting (with the name ``setting_...

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48.060606

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def get_field_info(self, field): """ Given an instance of a serializer field, return a dictionary of metadata about it. """ field_info = OrderedDict() serializer = field.parent if isinstance(field, serializers.ManyRelatedField): field_info['type'] = s...

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35.366667

22.866667

def isin(self, values, level=None): """ Return a boolean array where the index values are in `values`. Compute boolean array of whether each index value is found in the passed set of values. The length of the returned boolean array matches the length of the index. Param...

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31.793103

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def video_loss(top_out, targets, model_hparams, vocab_size, weights_fn): """Compute loss numerator and denominator for one shard of output.""" del vocab_size # unused arg logits = top_out logits = tf.reshape(logits, [-1] + common_layers.shape_list(logits)[2:]) targets = tf.reshape(targets, [-1] + common_laye...

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43.538462

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def get_all_used_vars(section): '''Get variables which are variables used by input statement and statements before it''' all_used_vars = set() for statement in section.statements: if statement[0] == '=': all_used_vars |= accessed_vars('='.join(statement[1:3])) elif statement[0] =...

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43.057692

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def process_inlines(parser, token): """ Searches through the provided content and applies inlines where ever they are found. Syntax:: {% process_inlines entry.body [in template_dir] [as varname] } Examples:: {% process_inlines entry.body %} {% process_inlines entry.body ...

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def blittable_figure_tensor(func, init_func, **tf_pyfunc_kwargs): '''Decorate matplotlib drawing routines with blitting support. This dectorator is meant to decorate functions that return matplotlib figures. The decorated function has to have the following signature def decorated(*args, **kwargs) ...

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41.191781

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def bundles_list(self, io_handler, name=None): """ Lists the bundles in the framework and their state. Possibility to filter on the bundle name. """ # Head of the table headers = ("ID", "Name", "State", "Version") # Get the bundles bundles = self._context...

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30.116279

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def get_cloud_masks(self, X): """ Runs the cloud detection on the input images (dimension n_images x n x m x 10 or n_images x n x m x 13) and returns the raster cloud mask (dimension n_images x n x m). Pixel values equal to 0 indicate pixels classified as clear-sky, while values ...

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46.705882

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def process(self, request_adu): """ Process request ADU and return response. :param request_adu: A bytearray containing the ADU request. :return: A bytearray containing the response of the ADU request. """ validate_crc(request_adu) return super(RTUServer, self).process(r...

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40.5

16.625

def message(self, do_html=True, custom_email_template=None): """ Returns a tuple with (text_message,html_message) """ context = { 'build': self.build, 'important_metadata': self.important_metadata, 'metadata': self.metadata, 'notification':...

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39.307692

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def get_forces(self, a): """Calculate atomic forces.""" f = np.zeros( [ len(a), 3 ], dtype=float ) for c in self.calcs: f += c.get_forces(a) return f

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31.333333

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def get_applied_migrations(databases=None): """ Returns a dictionary containing lists of all applied migrations where the key is the database alias. """ if not databases: databases = get_capable_databases() else: # We only loop through databases that are listed as "capable" ...

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33.3

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def __contribution_from_parameters(self, parameter_names): """private method get the prior and posterior uncertainty reduction as a result of some parameter becoming perfectly known Parameters ---------- parameter_names : list parameter that are perfectly known ...

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34.241379

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def process_sequence(sequence, rules=None, skip_non_vietnamese=True): """\ Convert a key sequence into a Vietnamese string with diacritical marks. Args: rules (optional): see docstring for process_key(). skip_non_vietnamese (optional): see docstring...

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def app_factory(global_settings, **local_settings): # pylint: disable=W0613 """ Default factory for creating a WSGI application using the everest configurator and root factory. :param dict global_settings: Global settings extracted from an ini file. Not used in this default app factory. :pa...

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44.869565

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def close(self): """Close socket connection""" if self._writer: self._writer.transport.close() self._writer = None self._reader = None

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def _construct_unique_id(self, id_prefix, lines): """Constructs a unique ID for a particular prompt in this case, based on the id_prefix and the lines in the prompt. """ text = [] for line in lines: if isinstance(line, str): text.append(line) ...

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39.818182

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def mse(x, xhat): """ Calcualte mse between vector or matrix x and xhat """ buf_ = x - xhat np.square(buf_, out=buf_) # square in-place sum_ = np.sum(buf_) sum_ /= x.size # divide in-place return sum_

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31.428571

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def back_make(dev, cache_mode='writeback', force=False, attach=True, bucket_size=None): ''' Create a backing device for attachment to a set. Because the block size must be the same, a cache set already needs to exist. CLI example: .. code-block:: bash salt '*' bcache.back_make sdc cache_m...

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34.981481

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def _format_content(self, content): """Returns `content` with consecutive spaces converted to non-break spaces, and linebreak converted into HTML br elements. :param content: text to format :type content: `str` :rtype: `str` """ content = re.sub(r'\n', '<br/>\n'...

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35.384615

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def get_timeout(self, callback=None): """ Get the visibility timeout for the queue. :rtype: int :return: The number of seconds as an integer. """ def got_timeout(a): if callable(callback): callback(int(a['VisibilityTimeout'])) ...

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33.818182

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async def on_step(self, iteration): self.combinedActions = [] """ - depots when low on remaining supply - townhalls contains commandcenter and orbitalcommand - self.units(TYPE).not_ready.amount selects all units of that type, filters incomplete units, and then counts the amount...

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def check_index(i): """ Checks and parses an index spec, must be a one-dimensional array [i0, i1, ...] """ i = asarray(i) if (i.ndim > 1) or (size(i) < 1): raise Exception("Index must be one-dimensional and non-singleton") return i

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25.6

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def get_json(self): """Create JSON data for AdapterConfig. :returns: JSON data as follows: { "VIOMManage":{ }, "InitBoot":{ }, "UseVirtualAddresses":{ }, "BootMenuEnable":{ ...

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def verifies( self, hash, signature ): """Verify that signature is a valid signature of hash. Return True if the signature is valid. """ # From X9.62 J.3.1. G = self.generator n = G.order() r = signature.r s = signature.s if r < 1 or r > n-1: return False if s < 1 or s > n-1: r...

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24.947368

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def main(): """Main function creates the cvloop.functions example notebook.""" notebook = { 'cells': [ { 'cell_type': 'markdown', 'metadata': {}, 'source': [ '# cvloop functions\n\n', 'This notebook shows...

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35.403846

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def list_repos(owner=None, **kwargs): """List repositories in a namespace.""" client = get_repos_api() api_kwargs = {} api_kwargs.update(utils.get_page_kwargs(**kwargs)) # pylint: disable=fixme # FIXME: Compatibility code until we work out how to conflate # the overlapping repos_list metho...

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35.142857

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def status(): '''Display the database migrations status''' for plugin, package, filename in available_migrations(): migration = get_migration(plugin, filename) if migration: status = green(migration['date'].strftime(DATE_FORMAT)) else: status = yellow('Not applied...

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39.888889

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def _build_credentials_tuple(mech, source, user, passwd, extra): """Build and return a mechanism specific credentials tuple. """ user = _unicode(user) if user is not None else None password = passwd if passwd is None else _unicode(passwd) if mech == 'GSSAPI': properties = extra.get('authmech...

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50.545455

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def favorite_remove(self, post_id): """Remove a post from favorites (Requires login). Parameters: post_id (int): Where post_id is the post id. """ return self._get('favorites/{0}.json'.format(post_id), method='DELETE', auth=True)

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def get_variant_label(v_conf): """ Generates name for variant images based settings (by variants sizes). """ if v_conf['MAX_SIZE'][0] is None: return 'h{}'.format(v_conf['MAX_SIZE'][1]) if v_conf['MAX_SIZE'][1] is None: return 'w{}'.format(v_conf['MAX_SIZE'][0]) return '{}x{}'.fo...

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def _on_mouse_moved(self, event): """ mouse moved callback """ if event.modifiers() & QtCore.Qt.ControlModifier: cursor = TextHelper(self.editor).word_under_mouse_cursor() if (not self._cursor or cursor.position() != self._cursor.position()): s...

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def set_bn_eval(m:nn.Module)->None: "Set bn layers in eval mode for all recursive children of `m`." for l in m.children(): if isinstance(l, bn_types) and not next(l.parameters()).requires_grad: l.eval() set_bn_eval(l)

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def makefile(self, sock, mode='r', bufsize=-1): """Return socket file object.""" cls = ( SSLFileobjectStreamReader if 'r' in mode else SSLFileobjectStreamWriter ) if SSL and isinstance(sock, ssl_conn_type): wrapped_socket = cls(sock, mode, ...

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def _compute_mean(self, C, A1, A2, A3, A4, A5, A6, mag, hypo_depth, rrup, mean, idx): """ Compute mean for subduction interface events, as explained in table 2, page 67. """ mean[idx] = (A1 + A2 * mag + C['C1'] + C['C2'] * (A3 - mag) ** 3 + ...

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def in_project_directory() -> bool: """ Returns whether or not the current working directory is a Cauldron project directory, which contains a cauldron.json file. """ current_directory = os.path.realpath(os.curdir) project_path = os.path.join(current_directory, 'cauldron.json') return os.pat...

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def num_in_memory(self): """Get number of values in memory.""" n = len(self._data) - 1 while n >= 0: if isinstance(self._data[n], _TensorValueDiscarded): break n -= 1 return len(self._data) - 1 - n

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def _ParseHeader(self, parser_mediator, structure): """Parses a log header. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. structure (pyparsing.ParseResults): structure of tokens derived from a line ...

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def is_a_string(var, allow_none=False): """ Returns True if var is a string (ascii or unicode) Result py-2 py-3 ----------------- ----- ----- b'bytes literal' True False 'string literal' True True u'unicode literal' True True Also returns True i...

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def timetree_likelihood(self): ''' Return the likelihood of the data given the current branch length in the tree ''' LH = 0 for node in self.tree.find_clades(order='preorder'): # sum the likelihood contributions of all branches if node.up is None: # root node ...

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def _make_parameters(self): """Converts a list of Parameters into DEAP format.""" self.value_means = [] self.value_ranges = [] self.arrangement = [] self.variable_parameters = [] current_var = 0 for parameter in self.parameters: if parameter.type == Pa...

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def list_envs(): """List all environments""" for env in lib.get_environments(): margin_left = lib.get_margin(len(env['name'])) print("{0}{1}{2}".format( env['name'], margin_left, env.get('description', '(no description)')))

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def get_occupation_updates(self, offset=0, count=1000): """ Returns <count> occupation updates from <offset>. An occupation update is a quadrupel (pc, source, timestamp, occupation) """ ret = [] c = self.conn.cursor() for pc_id, source_id, datetime, ...

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def print_help(self, prog_name, subcommand): """ Prints parser's help. :param prog_name: vcs main script name :param subcommand: command name """ parser = self.get_parser(prog_name, subcommand) parser.print_help()

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def _flip_feature(self, feature, parent_len): '''Adjust a feature's location when flipping DNA. :param feature: The feature to flip. :type feature: coral.Feature :param parent_len: The length of the sequence to which the feature belongs. :type parent_len: int ''' copy = feature.copy() ...

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def set_objective(self, expression): """Set linear objective of problem""" if isinstance(expression, numbers.Number): # Allow expressions with no variables as objective, # represented as a number expression = Expression() self._p.set_linear_objective( ...

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def mine_urls(urls, params=None, callback=None, **kwargs): """Concurrently retrieve URLs. :param urls: A set of URLs to concurrently retrieve. :type urls: iterable :param params: (optional) The URL parameters to send with each request. :type params: dict :param callback: (o...

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def _reverse_dependencies(self, cache_keys): """ Returns a lookup table of reverse dependencies for all the given cache keys. Example input: [('pep8', '1.5.7'), ('flake8', '2.4.0'), ('mccabe', '0.3'), ('pyflakes', '0.8.1')] Example ou...

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def getConfig(option, serverEndpoint=ServerEndpoint, verbose=Verbose, tikaServerJar=TikaServerJar, responseMimeType='application/json', services={'mime-types': '/mime-types', 'detectors': '/detectors', 'parsers': '/parsers/details'}): ''' Get the configuration of the Tika Server (parsers, detector...

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def nbytes_stored(self): """The total number of stored bytes of data for the array. This includes storage required for configuration metadata and user attributes.""" m = getsize(self._store, self._path) if self._chunk_store is None: return m else: ...

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def global_confirm(question, default=True): """Shows a confirmation that applies to all hosts by temporarily disabling parallel execution in Fabric """ if env.abort_on_prompts: return True original_parallel = env.parallel env.parallel = False result = confirm(question, default) e...

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def accepts(**schemas): """Create a decorator for validating function parameters. Example:: @accepts(a="number", body={"+field_ids": [int], "is_ok": bool}) def f(a, body): print (a, body["field_ids"], body.get("is_ok")) :param schemas: The schema for validating a given paramet...

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def _set_op(self, node): """ Translate a set operator node into SQLQuery. :param node: a treebrd node :return: a SQLQuery object for the tree rooted at node """ select_block = str(node.attributes) from_block = '({left} {operator} ALL {right}) AS {name}'.format( ...

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def _get_file_content(source): """Return a tuple, each value being a line of the source file. Remove empty lines and comments (lines starting with a '#'). """ filepath = os.path.join('siglists', source + '.txt') lines = [] with resource_stream(__name__, filepath) as f: for i, line in ...

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def rmon_alarm_entry_alarm_rising_event_index(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") rmon = ET.SubElement(config, "rmon", xmlns="urn:brocade.com:mgmt:brocade-rmon") alarm_entry = ET.SubElement(rmon, "alarm-entry") alarm_index_key = ET.Su...

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def moments_XXXY(X, Y, remove_mean=False, symmetrize=False, weights=None, modify_data=False, sparse_mode='auto', sparse_tol=0.0, column_selection=None, diag_only=False): """ Computes the first two unnormalized moments of X and Y If symmetrize is False, computes .. math: ...

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def from_file(filename="feff.inp"): """ Creates a Feff_tag dictionary from a PARAMETER or feff.inp file. Args: filename: Filename for either PARAMETER or feff.inp file Returns: Feff_tag object """ with zopen(filename, "rt") as f: line...

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def run(self): """Run the process.""" environment = os.environ.copy() # necessary for reading from processes that don't flush # stdout automatically environment["PYTHONUNBUFFERED"] = "1" self.proc = Popen(self.command, env=environment, stdout=PIPE, stderr=PIPE) Pr...

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def isEnabled(self): """ Returns whether or not this connection is enabled. :sa disableWithLayer :return <bool> """ if self._disableWithLayer and self._layer: lenabled = self._layer.isEnabled() elif self._inputNode and self._o...

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def replace(needle, with_=None, in_=None): """Replace occurrences of string(s) with other string(s) in (a) string(s). Unlike the built in :meth:`str.replace` method, this function provides clean API that clearly distinguishes the "needle" (string to replace), the replacement string, and the target stri...

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def _set_capabilities(self, v, load=False): """ Setter method for capabilities, mapped from YANG variable /capabilities (container) If this variable is read-only (config: false) in the source YANG file, then _set_capabilities is considered as a private method. Backends looking to populate this varia...

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def complete(self, query, current_url): """Called to interpret the server's response to an OpenID request. It is called in step 4 of the flow described in the consumer overview. @param query: A dictionary of the query parameters for this HTTP request. @param current...

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def decide(self, accepts, context_aware=False): """ Returns what (mimetype,format) the client wants to receive Parses the given Accept header and picks the best one that we know how to output Returns (mimetype, format) An empty Accept will default to rdf+xml An Accept with */* use rdf+xm...

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def execute(opts, data, func, args, kwargs): ''' Splay a salt function call execution time across minions over a number of seconds (default: 300) .. note:: You *probably* want to use --async here and look up the job results later. If you're dead set on getting the output from the CLI co...

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def get_matrix(self): """Return a copy of the current transformation matrix (CTM).""" matrix = Matrix() cairo.cairo_get_matrix(self._pointer, matrix._pointer) self._check_status() return matrix

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def add_logger(self, cb, level='NORMAL', filters='ALL'): '''Add a callback to receive log events from this component. @param cb The callback function to receive log events. It must have the signature cb(name, time, source, level, message), where name is the name of the component...

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def rank_within_group_by(self, group_by_cols, sort_cols, ascending=[], new_col_name="New_Rank_column", sort_cols_sorted=False): """ This function will add a new column rank where the ranking is produced as follows: 1. sorts the H2OFrame by columns sorted in by columns specified in group_by_cols...

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def cmd(self, tgt, fun, arg=(), timeout=None, tgt_type='glob', ret='', jid='', full_return=False, kwarg=None, **kwargs): ''' Synchronously execute a command on targeted minions ...

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def estimate_parameters_rippe( self, max_dist_kb, size_bin_kb, display_graph ): """ estimation by least square optimization of Rippe parameters on the experimental data :param max_dist_kb: :param size_bin_kb: """ logger.info("estimation of the paramete...

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def cd(self, remote): """ Change working directory on server """ try: self.conn.cwd(remote) except Exception: return False else: return self.pwd()

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def _generateMetricSpecs(options): """ Generates the Metrics for a given InferenceType Parameters: ------------------------------------------------------------------------- options: ExpGenerator options retval: (metricsList, optimizeMetricLabel) metricsList: list of metric string names ...

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def account_id(self, value): """The account_id property. Args: value (string). the property value. """ if value == self._defaults['ai.user.accountId'] and 'ai.user.accountId' in self._values: del self._values['ai.user.accountId'] else: ...

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def latitude(self, latitude): """Setter for latiutde.""" if not (-90 <= latitude <= 90): raise ValueError('latitude was {}, but has to be in [-90, 90]' .format(latitude)) self._latitude = latitude

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def _init_iter(self, X, y, is_train): """Initialize the iterator given input.""" if isinstance(X, (np.ndarray, nd.NDArray)): if y is None: if is_train: raise ValueError('y must be specified when X is numpy.ndarray') else: ...

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def ginga_to_matplotlib_cmap(cm, name=None): """Convert Ginga colormap to matplotlib's.""" if name is None: name = cm.name from matplotlib.colors import ListedColormap carr = np.asarray(cm.clst) mpl_cm = ListedColormap(carr, name=name, N=len(carr)) return mpl_cm

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def apply(self, fn, dtype=None, skip_na=True, seed=None): """ apply(fn, dtype=None, skip_na=True, seed=None) Transform each element of the SArray by a given function. The result SArray is of type ``dtype``. ``fn`` should be a function that returns exactly one value which can be ...

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def get_jobs(self, project, **params): """ Gets jobs from project, filtered by parameters :param project: project (repository name) to query data for :param params: keyword arguments to filter results """ return self._get_json_list(self.JOBS_ENDPOINT, project, **params)

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def hello_rivescript(): """Receive an inbound SMS and send a reply from RiveScript.""" from_number = request.values.get("From", "unknown") message = request.values.get("Body") reply = "(Internal error)" # Get a reply from RiveScript. if message: reply = bot.reply(from_number,...

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def delete(Bucket, MFA=None, RequestPayer=None, Force=False, region=None, key=None, keyid=None, profile=None): ''' Given a bucket name, delete it, optionally emptying it first. Returns {deleted: true} if the bucket was deleted and returns {deleted: false} if the bucket was not deleted. ...

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def _process_tensor_event(self, event, thresholds): """Converts a TensorEvent into a dict that encapsulates information on it. Args: event: The TensorEvent to convert. thresholds: An array of floats that ranges from 0 to 1 (in that direction and inclusive of 0 and 1). Returns: A ...

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def convert(self, inp): """Converts a string representation of some quantity of units into a quantities object. Args: inp (str): A textual representation of some quantity of units, e.g., "fifty kilograms". Returns: A quantities object representin...

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def eth_getStorageAt(self, address, position): """Get account storage data at position. :param address: :param position: :return: """ account = self.reader._get_account(address) return _encode_hex( utils.zpad(utils.encode_int(account.get_storage_data(...

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def generate_transition_matrix(g, seed=None): """Generates a random transition matrix for the graph ``g``. Parameters ---------- g : :any:`networkx.DiGraph`, :class:`numpy.ndarray`, dict, etc. Any object that :any:`DiGraph<networkx.DiGraph>` accepts. seed : int (optional) An integer...

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async def _send_rtcp_nack(self, media_ssrc, lost): """ Send an RTCP packet to report missing RTP packets. """ if self.__rtcp_ssrc is not None: packet = RtcpRtpfbPacket( fmt=RTCP_RTPFB_NACK, ssrc=self.__rtcp_ssrc, media_ssrc=media_ssrc) packet.lost ...

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def searchForMessageIDs(self, query, offset=0, limit=5, thread_id=None): """ Find and get message IDs by query :param query: Text to search for :param offset: Number of messages to skip :param limit: Max. number of messages to retrieve :param thread_id: User/Group ID to ...

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def calculate_size(username, password, uuid, owner_uuid, is_owner_connection, client_type, serialization_version, client_hazelcast_version): """ Calculates the request payload size""" data_size = 0 data_size += calculate_size_str(username) data_size += calculate_size_str(password) data_size += BOOLE...

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def calculate_subgraph_edge_overlap( graph: BELGraph, annotation: str = 'Subgraph' ) -> Tuple[ Mapping[str, EdgeSet], Mapping[str, Mapping[str, EdgeSet]], Mapping[str, Mapping[str, EdgeSet]], Mapping[str, Mapping[str, float]], ]: """Build a DatafFame to show the overlap between diffe...

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def _trapped_signals(self, client): """A contextmanager that handles SIGINT (control-c) and SIGQUIT (control-\\) remotely.""" signal_handler = PailgunClientSignalHandler( client, timeout=self._bootstrap_options.for_global_scope().pantsd_pailgun_quit_timeout) with ExceptionSink.trapped_signals(si...

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def _raise_decomposition_errors(uvw, antenna1, antenna2, chunks, ant_uvw, max_err): """ Raises informative exception for an invalid decomposition """ start = 0 problem_str = [] for ci, chunk in enumerate(chunks): end = start + chunk ant1 = antenna1[sta...

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32.38

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def get_origins(self, account_id, **kwargs): """Retrieves list of origin pull mappings for a specified CDN account. :param account_id int: the numeric ID associated with the CDN account. :param dict \\*\\*kwargs: additional arguments to include in the object mask...

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def posterior_chromatogram_hypotheses_fast(experiment, prior_chrom_null): """ Compute posterior probabilities for each chromatogram For each chromatogram (each group_id / peptide precursor), all hypothesis of all peaks being correct (and all others false) as well as the h0 (all peaks are false) are com...

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def run_tasks(self): ''' Runs all assigned task in separate green threads. If the task should not be run, schedule it ''' pool = Pool(len(self.tasks)) for task in self.tasks: # Launch a green thread to schedule the task # A task will be managed by 2 green ...

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def forward_on_instances(self, instances: List[Instance]) -> List[Dict[str, numpy.ndarray]]: """ Takes a list of :class:`~allennlp.data.instance.Instance`s, converts that text into arrays using this model's :class:`Vocabulary`, passes those arrays through :f...

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def get_ticks_from_axis_limits(self, multiple=1): """ Taking self._axis_limits and self._boundary_scale get the scaled ticks for all three axes and store them in self._ticks under the keys 'b' for bottom, 'l' for left and 'r' for right axes. """ for k in ['b', 'l', 'r']: ...

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def update(self, settings): """ Update object attributes from given settings Args: settings (dict): Dictionnary of elements to update settings. Returns: dict: Dictionnary of all current saved settings. """ settings = self.clean(settings) ...

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def process_task(f): """Decorator to (optionally) run function in a process.""" sig = inspect.signature(f) @wraps(f) def wrapper(*args, **kwargs): # get bound arguments for call ba = sig.bind_partial(*args, **kwargs) # when process is specified, remove from args and use to execu...

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def get_resource(self, resource_wrapper=None): """ Returns a ``Resource`` instance. :param resource_wrapper: A Resource subclass. :return: A ``Resource`` instance. :raises PoolEmptyError: If attempt to get resource fails or times out. """ rtracker = ...

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def move_tmp_log(logger): """ Move the temporary log file to the MultiQC data directory if it exists. """ try: # https://stackoverflow.com/questions/15435652/python-does-not-release-filehandles-to-logfile logging.shutdown() shutil.move(log_tmp_fn, os.path.join(config.data_dir, 'mult...

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def geocoding(ctx, query, forward, include_headers, lat, lon, place_type, output, dataset, country, bbox, features, limit): """This command returns places matching an address (forward mode) or places matching coordinates (reverse mode). In forward (the default) mode the query argument shall b...

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