kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def parse_duration(duration): """Attepmts to parse an ISO8601 formatted ``duration``. Returns a ``datetime.timedelta`` object. """ duration = str(duration).upper().strip() elements = ELEMENTS.copy() for pattern in (SIMPLE_DURATION, COMBINED_DURATION): if pattern.match(duration): ...	[ "def", "parse_duration", "(", "duration", ")", ":", "duration", "=", "str", "(", "duration", ")", ".", "upper", "(", ")", ".", "strip", "(", ")", "elements", "=", "ELEMENTS", ".", "copy", "(", ")", "for", "pattern", "in", "(", "SIMPLE_DURATION", ",", ...	37.846154	20.692308
def add_setting(self, name, value): ''' Adds a database setting that will be sent with every request. For example, `db.add_setting("max_execution_time", 10)` will limit query execution time to 10 seconds. The name must be string, and the value is converted to string in case ...	[ "def", "add_setting", "(", "self", ",", "name", ",", "value", ")", ":", "assert", "isinstance", "(", "name", ",", "string_types", ")", ",", "'Setting name must be a string'", "if", "value", "is", "None", ":", "self", ".", "settings", ".", "pop", "(", "name...	45	21.153846
def delete(self): """Stop the profiler.""" CProfileWrapper.profiler.disable() self.running = False self.set_status(204) self.finish()	[ "def", "delete", "(", "self", ")", ":", "CProfileWrapper", ".", "profiler", ".", "disable", "(", ")", "self", ".", "running", "=", "False", "self", ".", "set_status", "(", "204", ")", "self", ".", "finish", "(", ")" ]	28	11.333333
def from_shorthand(self, shorthand): """Convert from traditional Helmhotz pitch notation. Examples: >>> Note().from_shorthand("C,,") 'C-0' >>> Note().from_shorthand("C") 'C-2' >>> Note().from_shorthand("c'") 'C-4' """ name = '' oct...	[ "def", "from_shorthand", "(", "self", ",", "shorthand", ")", ":", "name", "=", "''", "octave", "=", "0", "for", "x", "in", "shorthand", ":", "if", "x", "in", "[", "'a'", ",", "'b'", ",", "'c'", ",", "'d'", ",", "'e'", ",", "'f'", ",", "'g'", "]...	28.777778	13.851852
def pad(self, sid, date): """ Fill sid container with empty data through the specified date. If the last recorded trade is not at the close, then that day will be padded with zeros until its close. Any day after that (up to and including the specified date) will be padded with `...	[ "def", "pad", "(", "self", ",", "sid", ",", "date", ")", ":", "table", "=", "self", ".", "_ensure_ctable", "(", "sid", ")", "last_date", "=", "self", ".", "last_date_in_output_for_sid", "(", "sid", ")", "tds", "=", "self", ".", "_session_labels", "if", ...	36.285714	22.857143
def make_random_histogram(center=0.0, stdev=default_stdev, length=default_feature_dim, num_bins=default_num_bins): "Returns a sequence of histogram density values that sum to 1.0" hist, bin_edges = np.histogram(get_distr(center, stdev, length), range=edge_range, bins=num_bins...	[ "def", "make_random_histogram", "(", "center", "=", "0.0", ",", "stdev", "=", "default_stdev", ",", "length", "=", "default_feature_dim", ",", "num_bins", "=", "default_num_bins", ")", ":", "hist", ",", "bin_edges", "=", "np", ".", "histogram", "(", "get_distr...	40.083333	29.25
def wraps(self, f): """Wrap a function for retrying. :param f: A function to wraps for retrying. """ @_utils.wraps(f) def wrapped_f(args, kw): return self.call(f, args, *kw) def retry_with(args, *kwargs): return self.copy(args, **kwargs)....	[ "def", "wraps", "(", "self", ",", "f", ")", ":", "@", "_utils", ".", "wraps", "(", "f", ")", "def", "wrapped_f", "(", "", "args", ",", "", "", "kw", ")", ":", "return", "self", ".", "call", "(", "f", ",", "", "args", ",", "", "", "kw"...	25.8125	16.125
def verify_dataset(): """Perform checks on experimental datasets""" parser = verify_dataset_parser() args = parser.parse_args() path_in = pathlib.Path(args.path).resolve() viol, aler, info = load.check_dataset(path_in) print_info("Checking {}".format(path_in)) for inf in info: print_...	[ "def", "verify_dataset", "(", ")", ":", "parser", "=", "verify_dataset_parser", "(", ")", "args", "=", "parser", ".", "parse_args", "(", ")", "path_in", "=", "pathlib", ".", "Path", "(", "args", ".", "path", ")", ".", "resolve", "(", ")", "viol", ",", ...	38	15.8
def create_datastore_from_yaml_schema(self, yaml_path, delete_first=0, path=None): # type: (str, Optional[int], Optional[str]) -> None """For tabular data, create a resource in the HDX datastore which enables data preview in HDX from a YAML file containi...	[ "def", "create_datastore_from_yaml_schema", "(", "self", ",", "yaml_path", ",", "delete_first", "=", "0", ",", "path", "=", "None", ")", ":", "# type: (str, Optional[int], Optional[str]) -> None", "data", "=", "load_yaml", "(", "yaml_path", ")", "self", ".", "create...	57.941176	33.882353
def get_app_model_voice(self, app_model_item): """ App Model voice Returns the js menu compatible voice dict if the user can see it, None otherwise """ if app_model_item.get('name', None) is None: raise ImproperlyConfigured('Model menu voices must have a name ...	[ "def", "get_app_model_voice", "(", "self", ",", "app_model_item", ")", ":", "if", "app_model_item", ".", "get", "(", "'name'", ",", "None", ")", "is", "None", ":", "raise", "ImproperlyConfigured", "(", "'Model menu voices must have a name key'", ")", "# noqa", "if...	45.166667	22.333333
def place_docker(self, docker, area='top'): """ IN DEVELOPMENT Places a DockWindow instance at the specified area ('top', 'bottom', 'left', 'right', or None) """ # map of options m = dict(top = _g.QtCore.Qt.TopDockWidgetArea, bottom = ...	[ "def", "place_docker", "(", "self", ",", "docker", ",", "area", "=", "'top'", ")", ":", "# map of options", "m", "=", "dict", "(", "top", "=", "_g", ".", "QtCore", ".", "Qt", ".", "TopDockWidgetArea", ",", "bottom", "=", "_g", ".", "QtCore", ".", "Qt...	32.851852	19.740741
def set_autosession(self, value=None): """ Turn autosession (automatic committing after each modification call) on/off. If value is None, only query the current value (don't change anything). """ if value is not None: self.rollback() self.autosession = val...	[ "def", "set_autosession", "(", "self", ",", "value", "=", "None", ")", ":", "if", "value", "is", "not", "None", ":", "self", ".", "rollback", "(", ")", "self", ".", "autosession", "=", "value", "return", "self", ".", "autosession" ]	38.444444	13.555556
def encodeEntitiesReentrant(self, input): """Do a global encoding of a string, replacing the predefined entities and non ASCII values with their entities and CharRef counterparts. Contrary to xmlEncodeEntities, this routine is reentrant, and result must be deallocated. """ ...	[ "def", "encodeEntitiesReentrant", "(", "self", ",", "input", ")", ":", "ret", "=", "libxml2mod", ".", "xmlEncodeEntitiesReentrant", "(", "self", ".", "_o", ",", "input", ")", "return", "ret" ]	56.142857	14.285714
def add_genes(in_file, data, max_distance=10000, work_dir=None): """Add gene annotations to a BED file from pre-prepared RNA-seq data. max_distance -- only keep annotations within this distance of event """ gene_file = regions.get_sv_bed(data, "exons", out_dir=os.path.dirname(in_file)) if gene_file...	[ "def", "add_genes", "(", "in_file", ",", "data", ",", "max_distance", "=", "10000", ",", "work_dir", "=", "None", ")", ":", "gene_file", "=", "regions", ".", "get_sv_bed", "(", "data", ",", "\"exons\"", ",", "out_dir", "=", "os", ".", "path", ".", "dir...	49.294118	24.117647
def convert_frames_to_video(tar_file_path, output_path="output.mp4", framerate=60, overwrite=False): """ Try to convert a tar file containing a sequence of frames saved by the meshcat viewer into a single video file. This relies on having `ffmpeg` installed on your system. """ output_path = os....	[ "def", "convert_frames_to_video", "(", "tar_file_path", ",", "output_path", "=", "\"output.mp4\"", ",", "framerate", "=", "60", ",", "overwrite", "=", "False", ")", ":", "output_path", "=", "os", ".", "path", ".", "abspath", "(", "output_path", ")", "if", "o...	43.735294	18.352941
def _pelita_member_filter(parent_name, item_names): """ Filter a list of autodoc items for which to generate documentation. Include only imports that come from the documented module or its submodules. """ filtered_names = [] if parent_name not in sys.modules: return item_names ...	[ "def", "_pelita_member_filter", "(", "parent_name", ",", "item_names", ")", ":", "filtered_names", "=", "[", "]", "if", "parent_name", "not", "in", "sys", ".", "modules", ":", "return", "item_names", "module", "=", "sys", ".", "modules", "[", "parent_name", ...	28.181818	20.727273
def start(name): # type: (str) -> None """ Start working on a new feature by branching off develop. This will create a new branch off develop called feature/<name>. Args: name (str): The name of the new feature. """ branch = git.current_branch(refresh=True) task_branch ...	[ "def", "start", "(", "name", ")", ":", "# type: (str) -> None", "branch", "=", "git", ".", "current_branch", "(", "refresh", "=", "True", ")", "task_branch", "=", "'task/'", "+", "common", ".", "to_branch_name", "(", "name", ")", "if", "branch", ".", "type...	30.368421	19.473684
def _validate_organization_data(organization_data): """ Validation helper """ if not validators.organization_data_is_valid(organization_data): exceptions.raise_exception( "Organization", organization_data, exceptions.InvalidOrganizationException )	[ "def", "_validate_organization_data", "(", "organization_data", ")", ":", "if", "not", "validators", ".", "organization_data_is_valid", "(", "organization_data", ")", ":", "exceptions", ".", "raise_exception", "(", "\"Organization\"", ",", "organization_data", ",", "exc...	37.5	13.625
def cast(self, dtype): """Cast data and gradient of this Parameter to a new data type. Parameters ---------- dtype : str or numpy.dtype The new data type. """ self.dtype = dtype if self._data is None: return with autograd.pause(): ...	[ "def", "cast", "(", "self", ",", "dtype", ")", ":", "self", ".", "dtype", "=", "dtype", "if", "self", ".", "_data", "is", "None", ":", "return", "with", "autograd", ".", "pause", "(", ")", ":", "self", ".", "_data", "=", "[", "i", ".", "astype", ...	33.058824	16.235294
def format_person_name(text): """Capitalize first letter for each part of the name. Example:: person_name = "James Bond" 中文文档将文本修改为人名格式。每个单词的第一个字母大写。 """ text = text.strip() if len(text) == 0: # if empty string, return it return text else: text = text.lo...	[ "def", "format_person_name", "(", "text", ")", ":", "text", "=", "text", ".", "strip", "(", ")", "if", "len", "(", "text", ")", "==", "0", ":", "# if empty string, return it", "return", "text", "else", ":", "text", "=", "text", ".", "lower", "(", ")", ...	26.7	20
def add_collaboration(self, collaboration): """Add collaboration. :param collaboration: collaboration for the current document :type collaboration: string """ collaborations = normalize_collaboration(collaboration) for collaboration in collaborations: self._a...	[ "def", "add_collaboration", "(", "self", ",", "collaboration", ")", ":", "collaborations", "=", "normalize_collaboration", "(", "collaboration", ")", "for", "collaboration", "in", "collaborations", ":", "self", ".", "_append_to", "(", "'collaborations'", ",", "{", ...	35.636364	12.545455
def is_colliding(self, other): """Check to see if two circles are colliding.""" if isinstance(other, BoundingCircle): #Calculate the distance between two circles. distance = Vector2.distance(self.coords, other.coords) #Check to see if the sum of thier radi are greate...	[ "def", "is_colliding", "(", "self", ",", "other", ")", ":", "if", "isinstance", "(", "other", ",", "BoundingCircle", ")", ":", "#Calculate the distance between two circles.", "distance", "=", "Vector2", ".", "distance", "(", "self", ".", "coords", ",", "other", ...	41.705882	21.588235
def inverse_transform(self, X): """Transform data back to its original space. Returns an array X_original whose transform would be X. Parameters ---------- X : array-like, shape (n_samples, n_components) New data, where n_samples in the number of samples ...	[ "def", "inverse_transform", "(", "self", ",", "X", ")", ":", "check_is_fitted", "(", "self", ",", "\"mean_\"", ")", "if", "self", ".", "whiten", ":", "return", "(", "da", ".", "dot", "(", "X", ",", "np", ".", "sqrt", "(", "self", ".", "explained_vari...	29.5	22.5
def prepare_table(table): """Make the table 'symmetric' where the lower left part of the matrix is the reverse probability """ n = len(table) for i, row in enumerate(table): assert len(row) == n for j, el in enumerate(row): if i == j: table[i][i] = 0.0 ...	[ "def", "prepare_table", "(", "table", ")", ":", "n", "=", "len", "(", "table", ")", "for", "i", ",", "row", "in", "enumerate", "(", "table", ")", ":", "assert", "len", "(", "row", ")", "==", "n", "for", "j", ",", "el", "in", "enumerate", "(", "...	30.153846	10.538462
def deliver(self, project, new_project_name, to_user, share_users, force_send, path_filter, user_message): """ Remove access to project_name for to_user, copy to new_project_name if not None, send message to service to email user so they can have access. :param project: RemoteProject pre...	[ "def", "deliver", "(", "self", ",", "project", ",", "new_project_name", ",", "to_user", ",", "share_users", ",", "force_send", ",", "path_filter", ",", "user_message", ")", ":", "if", "self", ".", "_is_current_user", "(", "to_user", ")", ":", "raise", "Share...	67	31.727273
def Hakim_Steinberg_Stiel(T, Tc, Pc, omega, StielPolar=0): r'''Calculates air-water surface tension using the reference fluids methods of [1]_. .. math:: \sigma = 4.60104\times 10^{-7} P_c^{2/3}T_c^{1/3}Q_p \left(\frac{1-T_r}{0.4}\right)^m Q_p = 0.1574+0.359\omega-1.769\chi-13.69\chi^2-0.5...	[ "def", "Hakim_Steinberg_Stiel", "(", "T", ",", "Tc", ",", "Pc", ",", "omega", ",", "StielPolar", "=", "0", ")", ":", "Q", "=", "(", "0.1574", "+", "0.359", "", "omega", "-", "1.769", "", "StielPolar", "-", "13.69", "", "StielPolar", "*", "2", "...	31.25	26.357143
def to_vcf(in_tsv, data): """Convert seq2c output file into BED output. """ call_convert = {"Amp": "DUP", "Del": "DEL"} out_file = "%s.vcf" % utils.splitext_plus(in_tsv)[0] if not utils.file_uptodate(out_file, in_tsv): with file_transaction(data, out_file) as tx_out_file: with op...	[ "def", "to_vcf", "(", "in_tsv", ",", "data", ")", ":", "call_convert", "=", "{", "\"Amp\"", ":", "\"DUP\"", ",", "\"Del\"", ":", "\"DEL\"", "}", "out_file", "=", "\"%s.vcf\"", "%", "utils", ".", "splitext_plus", "(", "in_tsv", ")", "[", "0", "]", "if",...	64.714286	27.285714
def delete(self, obj): """Required functionality.""" del_id = obj.get_id() if not del_id: return cur = self._conn().cursor() tabname = obj.__class__.get_table_name() query = 'delete from %s where id = ?' % tabname cur.execute(query, (del_id,)) ...	[ "def", "delete", "(", "self", ",", "obj", ")", ":", "del_id", "=", "obj", ".", "get_id", "(", ")", "if", "not", "del_id", ":", "return", "cur", "=", "self", ".", "_conn", "(", ")", ".", "cursor", "(", ")", "tabname", "=", "obj", ".", "__class__",...	25.071429	18
def logout(cache): """ Logs out the current session by removing it from the cache. This is expected to only occur when a session has """ cache.set(flask.session['auth0_key'], None) flask.session.clear() return True	[ "def", "logout", "(", "cache", ")", ":", "cache", ".", "set", "(", "flask", ".", "session", "[", "'auth0_key'", "]", ",", "None", ")", "flask", ".", "session", ".", "clear", "(", ")", "return", "True" ]	29.375	13.125
def from_dict(cls, d, encoding='base64'): ''' Construct a ``Report`` object from dictionary. :type d: dictionary :param d: dictionary representing the report :param encoding: encoding of strings in the dictionary (default: 'base64') :return: Report object ''' ...	[ "def", "from_dict", "(", "cls", ",", "d", ",", "encoding", "=", "'base64'", ")", ":", "report", "=", "Report", "(", "Report", ".", "_decode", "(", "d", "[", "'name'", "]", ",", "encoding", ")", ")", "report", ".", "set_status", "(", "Report", ".", ...	37.565217	19.478261
def delete_GitHub_token(token_id, *, auth, headers): """Delete a temporary GitHub token""" r = requests.delete('https://api.github.com/authorizations/{id}'.format(id=token_id), auth=auth, headers=headers) GitHub_raise_for_status(r)	[ "def", "delete_GitHub_token", "(", "token_id", ",", "*", ",", "auth", ",", "headers", ")", ":", "r", "=", "requests", ".", "delete", "(", "'https://api.github.com/authorizations/{id}'", ".", "format", "(", "id", "=", "token_id", ")", ",", "auth", "=", "auth"...	60	24.75
def api_request(api_base_url='http://localhost:8080/', path='', method='get', data=None, params={}, verify=True, cert=list()): """ Wrapper function for requests :param api_base_url: Base URL for requests :param path: Path to request :param method: HTTP method :param data: Data for post (ign...	[ "def", "api_request", "(", "api_base_url", "=", "'http://localhost:8080/'", ",", "path", "=", "''", ",", "method", "=", "'get'", ",", "data", "=", "None", ",", "params", "=", "{", "}", ",", "verify", "=", "True", ",", "cert", "=", "list", "(", ")", "...	33.806452	17.741935
def get_context_dict(self): """ return a context dict of the desired state """ context_dict = {} for s in self.sections(): for k, v in self.manifest.items(s): context_dict["%s:%s" % (s, k)] = v for k, v in self.inputs.values().items(): context_dict...	[ "def", "get_context_dict", "(", "self", ")", ":", "context_dict", "=", "{", "}", "for", "s", "in", "self", ".", "sections", "(", ")", ":", "for", "k", ",", "v", "in", "self", ".", "manifest", ".", "items", "(", "s", ")", ":", "context_dict", "[", ...	50.090909	17.181818
def apply_custom_filter(self, filter_func, to_ngrams=False): """ Apply a custom filter function `filter_func` to all tokens or ngrams (if `to_ngrams` is True). `filter_func` must accept a single parameter: a dictionary of structure `{<doc_label>: <tokens list>}`. It must return a diction...	[ "def", "apply_custom_filter", "(", "self", ",", "filter_func", ",", "to_ngrams", "=", "False", ")", ":", "# Because it is not possible to send a function to the workers, all tokens must be fetched from the workers", "# first and then the custom function is called and run in a single proces...	39.438596	24.45614
def get_num_nodes(properties=None, hadoop_conf_dir=None, offline=False): """ Get the number of task trackers in the Hadoop cluster. All arguments are passed to :func:`get_task_trackers`. """ return len(get_task_trackers(properties, hadoop_conf_dir, offline))	[ "def", "get_num_nodes", "(", "properties", "=", "None", ",", "hadoop_conf_dir", "=", "None", ",", "offline", "=", "False", ")", ":", "return", "len", "(", "get_task_trackers", "(", "properties", ",", "hadoop_conf_dir", ",", "offline", ")", ")" ]	39	19.857143
def contains_vasp_input(dir_name): """ Checks if a directory contains valid VASP input. Args: dir_name: Directory name to check. Returns: True if directory contains all four VASP input files (INCAR, POSCAR, KPOINTS and POTCAR). """ for f in ["INCAR", "POSCAR...	[ "def", "contains_vasp_input", "(", "dir_name", ")", ":", "for", "f", "in", "[", "\"INCAR\"", ",", "\"POSCAR\"", ",", "\"POTCAR\"", ",", "\"KPOINTS\"", "]", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "os", ".", "path", ".", "join", "(", ...	29.705882	20.058824
def filter_callbacks(cls, client, event_data): """Filter registered events and yield all of their callbacks.""" for event in cls.filter_events(client, event_data): for cb in event.callbacks: yield cb	[ "def", "filter_callbacks", "(", "cls", ",", "client", ",", "event_data", ")", ":", "for", "event", "in", "cls", ".", "filter_events", "(", "client", ",", "event_data", ")", ":", "for", "cb", "in", "event", ".", "callbacks", ":", "yield", "cb" ]	39.833333	13.833333
def fit_bristow_campbell_params(tmin, tmax, pot_rad_daily, obs_rad_daily): """ Fit the A and C parameters for the Bristow & Campbell (1984) model using observed daily minimum and maximum temperature and mean daily (e.g. aggregated from hourly values) solar radiation. Parameters ---------...	[ "def", "fit_bristow_campbell_params", "(", "tmin", ",", "tmax", ",", "pot_rad_daily", ",", "obs_rad_daily", ")", ":", "def", "bc_absbias", "(", "ac", ")", ":", "return", "np", ".", "abs", "(", "np", ".", "mean", "(", "bristow_campbell", "(", "df", ".", "...	34.925926	28.333333
def Dropout(p=0, per_channel=False, name=None, deterministic=False, random_state=None): """ Augmenter that sets a certain fraction of pixels in images to zero. dtype support:: See ``imgaug.augmenters.arithmetic.MultiplyElementwise``. Parameters ---------- p : float or tuple of float o...	[ "def", "Dropout", "(", "p", "=", "0", ",", "per_channel", "=", "False", ",", "name", "=", "None", ",", "deterministic", "=", "False", ",", "random_state", "=", "None", ")", ":", "if", "ia", ".", "is_single_number", "(", "p", ")", ":", "p2", "=", "i...	39.204819	26.120482
def html_to_text(html, base_url='', bodywidth=CONFIG_DEFAULT): """ Convert a HTML mesasge to plain text. """ def _patched_handle_charref(c): self = h charref = self.charref(c) if self.code or self.pre: charref = cgi.escape(charref) self.o(charref, 1) def ...	[ "def", "html_to_text", "(", "html", ",", "base_url", "=", "''", ",", "bodywidth", "=", "CONFIG_DEFAULT", ")", ":", "def", "_patched_handle_charref", "(", "c", ")", ":", "self", "=", "h", "charref", "=", "self", ".", "charref", "(", "c", ")", "if", "sel...	35	14.818182
def get_es_label(obj, def_obj): """ Returns object with label for an object that goes into the elacticsearch 'label' field args: obj: data object to update def_obj: the class instance that has defintion values """ label_flds = LABEL_FIELDS if def_obj.es_defs.get('kds_esLabel...	[ "def", "get_es_label", "(", "obj", ",", "def_obj", ")", ":", "label_flds", "=", "LABEL_FIELDS", "if", "def_obj", ".", "es_defs", ".", "get", "(", "'kds_esLabel'", ")", ":", "label_flds", "=", "def_obj", ".", "es_defs", "[", "'kds_esLabel'", "]", "+", "LABE...	36.357143	17.357143
def harvest_fundref(source=None): """Harvest funders from FundRef and store as authority records.""" loader = LocalFundRefLoader(source=source) if source \ else RemoteFundRefLoader() for funder_json in loader.iter_funders(): register_funder.delay(funder_json)	[ "def", "harvest_fundref", "(", "source", "=", "None", ")", ":", "loader", "=", "LocalFundRefLoader", "(", "source", "=", "source", ")", "if", "source", "else", "RemoteFundRefLoader", "(", ")", "for", "funder_json", "in", "loader", ".", "iter_funders", "(", "...	47	6.333333
def _qkey_to_ascii(event): """ (Try to) convert the Qt key event to the corresponding ASCII sequence for the terminal. This works fine for standard alphanumerical characters, but most other characters require terminal specific control_modifier sequences. The conversion below works for TERM="linux' t...	[ "def", "_qkey_to_ascii", "(", "event", ")", ":", "if", "sys", ".", "platform", "==", "'darwin'", ":", "control_modifier", "=", "QtCore", ".", "Qt", ".", "MetaModifier", "else", ":", "control_modifier", "=", "QtCore", ".", "Qt", ".", "ControlModifier", "ctrl"...	38.215054	11.333333
def build_stack_docs(root_project_dir, skippedNames=None): """Build stack Sphinx documentation (main entrypoint). Parameters ---------- root_project_dir : `str` Path to the root directory of the main documentation project. This is the directory containing the ``conf.py`` file. skipp...	[ "def", "build_stack_docs", "(", "root_project_dir", ",", "skippedNames", "=", "None", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "# Create the directory where module content is symlinked", "# NOTE: this path is hard-wired in for pipelines.lsst.i...	40.225	18.4375
def init_from_acceptor(self, acceptor): """ Adds a sink state Args: alphabet (list): The input alphabet Returns: None """ self.states = copy.deepcopy(acceptor.states) self.alphabet = copy.deepcopy(acceptor.alphabet) self.osyms = cop...	[ "def", "init_from_acceptor", "(", "self", ",", "acceptor", ")", ":", "self", ".", "states", "=", "copy", ".", "deepcopy", "(", "acceptor", ".", "states", ")", "self", ".", "alphabet", "=", "copy", ".", "deepcopy", "(", "acceptor", ".", "alphabet", ")", ...	32.166667	12.166667
def main(kw): """Command line entry point; arguments must match those defined in in :meth:`create_parser()`; returns 0 for success, else 1. Example:: command.main("-i", "/.py", "--no-default-excludes") Runs formic printing out all .py files in the current working directory and its child...	[ "def", "main", "(", "*", "kw", ")", ":", "parser", "=", "create_parser", "(", ")", "args", "=", "parser", ".", "parse_args", "(", "kw", "if", "kw", "else", "None", ")", "if", "args", ".", "help", ":", "parser", ".", "print_help", "(", ")", "elif", ...	30.818966	23.068966
def non_structured_query(table, query=None, **kwargs): ''' Run a non-structed (not a dict) query on a servicenow table. See http://wiki.servicenow.com/index.php?title=Encoded_Query_Strings#gsc.tab=0 for help on constructing a non-structured query string. :param table: The table name, e.g. sys_user ...	[ "def", "non_structured_query", "(", "table", ",", "query", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "_get_client", "(", ")", "client", ".", "table", "=", "table", "# underlying lib doesn't use six or past.basestring,", "# does isinstance(x, str...	34.090909	22.272727
def rubles(amount, zero_for_kopeck=False): """Converts float value to in-words representation (for money)""" try: res = numeral.rubles(amount, zero_for_kopeck) except Exception as err: # because filter must die silently res = default_value % {'error': err, 'value': str(amount)} r...	[ "def", "rubles", "(", "amount", ",", "zero_for_kopeck", "=", "False", ")", ":", "try", ":", "res", "=", "numeral", ".", "rubles", "(", "amount", ",", "zero_for_kopeck", ")", "except", "Exception", "as", "err", ":", "# because filter must die silently", "res", ...	40.25	14.125
def many(cls, filter=None, **kwargs): """Return a list of documents matching the filter""" from mongoframes.queries import Condition, Group, to_refs # Flatten the projection kwargs['projection'], references, subs = \ cls._flatten_projection( kwargs.ge...	[ "def", "many", "(", "cls", ",", "filter", "=", "None", ",", "", "", "kwargs", ")", ":", "from", "mongoframes", ".", "queries", "import", "Condition", ",", "Group", ",", "to_refs", "# Flatten the projection", "kwargs", "[", "'projection'", "]", ",", "refe...	34.08	19.44
def generate_key(s, pattern="%s.txt"): """ Generates the cache key for the given string using the content in pattern to format the output string """ h = hashlib.sha1() #h.update(s) h.update(s.encode('utf-8')) return pattern % h.hexdigest()	[ "def", "generate_key", "(", "s", ",", "pattern", "=", "\"%s.txt\"", ")", ":", "h", "=", "hashlib", ".", "sha1", "(", ")", "#h.update(s)", "h", ".", "update", "(", "s", ".", "encode", "(", "'utf-8'", ")", ")", "return", "pattern", "%", "h", ".", "he...	29.222222	11.666667
def do_cmd_private_sub(self, cmd): '''Remove certificate and key output archived by sosreport. cmd is the command name from which output is collected (i.e. exlcuding parameters). Any matching instances are replaced with: '-----SCRUBBED' and this function does not take a regexp or substit...	[ "def", "do_cmd_private_sub", "(", "self", ",", "cmd", ")", ":", "globstr", "=", "''", "+", "cmd", "+", "''", "self", ".", "_log_debug", "(", "\"Scrubbing certs and keys for commands matching %s\"", "%", "(", "cmd", ")", ")", "if", "not", "self", ".", "exec...	45.297297	21.135135
def getLoginMethods(store, protocol=None): """ Retrieve L{LoginMethod} items from store C{store}, optionally constraining them by protocol """ if protocol is not None: comp = OR(LoginMethod.protocol == u'*', LoginMethod.protocol == protocol) else: comp = None ...	[ "def", "getLoginMethods", "(", "store", ",", "protocol", "=", "None", ")", ":", "if", "protocol", "is", "not", "None", ":", "comp", "=", "OR", "(", "LoginMethod", ".", "protocol", "==", "u'*'", ",", "LoginMethod", ".", "protocol", "==", "protocol", ")", ...	31.727273	13
def create_criteria(cls, query): """Return a criteria from a dictionary containing a query. Query should be a dictionary, keyed by field name. If the value is a list, it will be divided into multiple criteria as required. """ criteria = [] for name, value in query.items(...	[ "def", "create_criteria", "(", "cls", ",", "query", ")", ":", "criteria", "=", "[", "]", "for", "name", ",", "value", "in", "query", ".", "items", "(", ")", ":", "if", "isinstance", "(", "value", ",", "list", ")", ":", "for", "inner_value", "in", "...	36.736842	13.421053
def set_preferences(self, user=None, **kwargs): """Set preferences from keyword arguments.""" if user is None: user = current_user d = {pref.key: pref for pref in user.preferences} for k, v in kwargs.items(): if k in d: d[k].value = v ...	[ "def", "set_preferences", "(", "self", ",", "user", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "user", "is", "None", ":", "user", "=", "current_user", "d", "=", "{", "pref", ".", "key", ":", "pref", "for", "pref", "in", "user", ".", "p...	34.666667	14.416667
def sign(self, authenticator): """Sign this OMAPI message. @type authenticator: OmapiAuthenticatorBase """ self.authid = authenticator.authid self.signature = b"\0" * authenticator.authlen # provide authlen self.signature = authenticator.sign(self.as_string(forsigning=True)) assert len(self.signature) ==...	[ "def", "sign", "(", "self", ",", "authenticator", ")", ":", "self", ".", "authid", "=", "authenticator", ".", "authid", "self", ".", "signature", "=", "b\"\\0\"", "*", "authenticator", ".", "authlen", "# provide authlen", "self", ".", "signature", "=", "auth...	41.875	11.125
def filter_correlation(self, x_analyte, y_analyte, window=15, r_threshold=0.9, p_threshold=0.05, filt=True, recalc=False): """ Calculate correlation filter. Parameters ---------- x_analyte, y_analyte : str The names of the x and y analytes ...	[ "def", "filter_correlation", "(", "self", ",", "x_analyte", ",", "y_analyte", ",", "window", "=", "15", ",", "r_threshold", "=", "0.9", ",", "p_threshold", "=", "0.05", ",", "filt", "=", "True", ",", "recalc", "=", "False", ")", ":", "# make window odd", ...	32.875	21.375
def image1(d, u, v, w, dmind, dtind, beamnum, irange): """ Parallelizable function for imaging a chunk of data for a single dm. Assumes data is dedispersed and resampled, so this just images each integration. Simple one-stage imaging that returns dict of params. returns dictionary with keys of cand loca...	[ "def", "image1", "(", "d", ",", "u", ",", "v", ",", "w", ",", "dmind", ",", "dtind", ",", "beamnum", ",", "irange", ")", ":", "i0", ",", "i1", "=", "irange", "data_resamp", "=", "numpyview", "(", "data_resamp_mem", ",", "'complex64'", ",", "datashape...	49.474359	23.666667
def _create_filenames(filename_schema, feed_type): """ Returns a dictionary of beam filename pairs, keyed on correlation,from the cartesian product of correlations and real, imaginary pairs Given 'beam_$(corr)_$(reim).fits' returns: { 'xx' : ('beam_xx_re.fits', 'beam_xx_im.fits'), '...	[ "def", "_create_filenames", "(", "filename_schema", ",", "feed_type", ")", ":", "template", "=", "FitsFilenameTemplate", "(", "filename_schema", ")", "def", "_re_im_filenames", "(", "corr", ",", "template", ")", ":", "try", ":", "return", "tuple", "(", "template...	33.346939	17.346939
def to_json(self): """ called by VersionEncoder.default() when doing json.dumps() on the object the json materializes in reverse order from the order used here """ return { "build_number": self._build_number, "commit_hash": self._commit_hash, "last_modified": self._last_modif...	[ "def", "to_json", "(", "self", ")", ":", "return", "{", "\"build_number\"", ":", "self", ".", "_build_number", ",", "\"commit_hash\"", ":", "self", ".", "_commit_hash", ",", "\"last_modified\"", ":", "self", ".", "_last_modified", ",", "\"location\"", ":", "se...	33	12.333333
def create(self, messaging_service_sid, friendly_name=values.unset, attributes=values.unset, date_created=values.unset, date_updated=values.unset, created_by=values.unset): """ Create a new SessionInstance :param unicode messaging_service_sid: The unique id of the ...	[ "def", "create", "(", "self", ",", "messaging_service_sid", ",", "friendly_name", "=", "values", ".", "unset", ",", "attributes", "=", "values", ".", "unset", ",", "date_created", "=", "values", ".", "unset", ",", "date_updated", "=", "values", ".", "unset",...	43.71875	24.53125
def _init_virtual_io(self, file): """Initialize callback functions for sf_open_virtual().""" @_ffi.callback("sf_vio_get_filelen") def vio_get_filelen(user_data): curr = file.tell() file.seek(0, SEEK_END) size = file.tell() file.seek(curr, SEEK_SET)...	[ "def", "_init_virtual_io", "(", "self", ",", "file", ")", ":", "@", "_ffi", ".", "callback", "(", "\"sf_vio_get_filelen\"", ")", "def", "vio_get_filelen", "(", "user_data", ")", ":", "curr", "=", "file", ".", "tell", "(", ")", "file", ".", "seek", "(", ...	35.5	12.26
def raw(self, query: Any, data: Any = None): """Run raw query on Repository. For this stand-in repository, the query string is a json string that contains kwargs criteria with straigh-forward equality checks. Individual criteria are always ANDed and the result is always a subset of the ...	[ "def", "raw", "(", "self", ",", "query", ":", "Any", ",", "data", ":", "Any", "=", "None", ")", ":", "# Ensure that we are dealing with a string, for this repository", "assert", "isinstance", "(", "query", ",", "str", ")", "input_db", "=", "self", ".", "conn",...	35.371429	21.942857
def empty(): """ Create an empty set. """ if not hasattr(empty, '_instance'): empty._instance = Interval(AtomicInterval(OPEN, inf, -inf, OPEN)) return empty._instance	[ "def", "empty", "(", ")", ":", "if", "not", "hasattr", "(", "empty", ",", "'_instance'", ")", ":", "empty", ".", "_instance", "=", "Interval", "(", "AtomicInterval", "(", "OPEN", ",", "inf", ",", "-", "inf", ",", "OPEN", ")", ")", "return", "empty", ...	26.857143	13.142857
def _transform_params(self, params): """Applies all transforms to the given params. Parameters ---------- \params : Key, value pairs of parameters to apply the transforms to. Returns ------- dict A dictionary of the transformed parame...	[ "def", "_transform_params", "(", "self", ",", "", "", "params", ")", ":", "# apply inverse transforms to go from sampling parameters to", "# variable args", "if", "self", ".", "sampling_transforms", "is", "not", "None", ":", "params", "=", "self", ".", "sampling_tra...	37.8	20.08
def display_url(target): """Displaying URL in an IPython notebook to allow the user to click and check on information. With thanks to Fernando Perez for putting together the implementation! :param target: the url to display. :type target: string.""" prefix = u"http://" if not target.startswith("http") ...	[ "def", "display_url", "(", "target", ")", ":", "prefix", "=", "u\"http://\"", "if", "not", "target", ".", "startswith", "(", "\"http\"", ")", "else", "u\"\"", "target", "=", "prefix", "+", "target", "display", "(", "HTML", "(", "u'<a href=\"{t}\" target=_blank...	53.125	16.125
def create_metrics(self, configs: Iterable[MetricConfig]) -> Dict[str, Metric]: """Create Prometheus metrics from a list of MetricConfigs.""" metrics: Dict[str, Metric] = { config.name: self._register_metric(config) for config in configs } s...	[ "def", "create_metrics", "(", "self", ",", "configs", ":", "Iterable", "[", "MetricConfig", "]", ")", "->", "Dict", "[", "str", ",", "Metric", "]", ":", "metrics", ":", "Dict", "[", "str", ",", "Metric", "]", "=", "{", "config", ".", "name", ":", "...	40.333333	14.222222
def signature(self): "Instance file name" kw = self.get_params() keys = sorted(kw.keys()) l = [] for k in keys: n = k[0] + k[-1] v = kw[k] if k == 'function_set': v = "_".join([x.__name__[0] + x.__n...	[ "def", "signature", "(", "self", ")", ":", "kw", "=", "self", ".", "get_params", "(", ")", "keys", "=", "sorted", "(", "kw", ".", "keys", "(", ")", ")", "l", "=", "[", "]", "for", "k", "in", "keys", ":", "n", "=", "k", "[", "0", "]", "+", ...	31.555556	12.333333
def imrphenomc_tmplt(**kwds): """ Return an IMRPhenomC waveform using CUDA to generate the phase and amplitude Main Paper: arXiv:1005.3306 """ # Pull out the input arguments f_min = float128(kwds['f_lower']) f_max = float128(kwds['f_final']) delta_f = float128(kwds['delta_f']) distance...	[ "def", "imrphenomc_tmplt", "(", "", "", "kwds", ")", ":", "# Pull out the input arguments", "f_min", "=", "float128", "(", "kwds", "[", "'f_lower'", "]", ")", "f_max", "=", "float128", "(", "kwds", "[", "'f_final'", "]", ")", "delta_f", "=", "float128", ...	34.995763	24.432203
def trim(self, lower=None, upper=None): """Trim values in accordance with :math:`BoWa \\leq NFk`. >>> from hydpy.models.lland import * >>> parameterstep('1d') >>> nhru(5) >>> nfk(200.) >>> states.bowa(-100.,0., 100., 200., 300.) >>> states.bowa bowa(0.0, ...	[ "def", "trim", "(", "self", ",", "lower", "=", "None", ",", "upper", "=", "None", ")", ":", "if", "upper", "is", "None", ":", "upper", "=", "self", ".", "subseqs", ".", "seqs", ".", "model", ".", "parameters", ".", "control", ".", "nfk", "lland_seq...	35.857143	13.571429
def default(self, o): """Implement this method in a subclass such that it returns a serializable object for ``o``, or calls the base implementation (to raise a ``TypeError``). For example, to support arbitrary iterators, you could implement default like this:: def d...	[ "def", "default", "(", "self", ",", "o", ")", ":", "if", "isinstance", "(", "o", ",", "datetime", ")", ":", "return", "http_date", "(", "o", ")", "if", "isinstance", "(", "o", ",", "uuid", ".", "UUID", ")", ":", "return", "str", "(", "o", ")", ...	34.125	13.375
def delete_file(self, target, path): """Delete a file from a device :param target: The device(s) to be targeted with this request :type target: :class:`devicecloud.sci.TargetABC` or list of :class:`devicecloud.sci.TargetABC` instances :param path: The path on the target to the file to d...	[ "def", "delete_file", "(", "self", ",", "target", ",", "path", ")", ":", "command_block", "=", "FileSystemServiceCommandBlock", "(", ")", "command_block", ".", "add_command", "(", "DeleteCommand", "(", "path", ")", ")", "root", "=", "_parse_command_response", "(...	52.913043	27.304348
def _set_active_tools(self, plot): "Activates the list of active tools" for tool in self.active_tools: if isinstance(tool, util.basestring): tool_type = TOOL_TYPES[tool] matching = [t for t in plot.toolbar.tools if isinstance(t, too...	[ "def", "_set_active_tools", "(", "self", ",", "plot", ")", ":", "for", "tool", "in", "self", ".", "active_tools", ":", "if", "isinstance", "(", "tool", ",", "util", ".", "basestring", ")", ":", "tool_type", "=", "TOOL_TYPES", "[", "tool", "]", "matching"...	47.52381	10.761905
def asyncPipeStrconcat(context=None, _INPUT=None, conf=None, **kwargs): """A string module that asynchronously builds a string. Loopable. No direct input. Parameters ---------- context : pipe2py.Context object _INPUT : asyncPipe like object (twisted Deferred iterable of items) conf : { ...	[ "def", "asyncPipeStrconcat", "(", "context", "=", "None", ",", "_INPUT", "=", "None", ",", "conf", "=", "None", ",", "", "", "kwargs", ")", ":", "splits", "=", "yield", "asyncGetSplits", "(", "_INPUT", ",", "conf", "[", "'part'", "]", ",", "", ""...	31.73913	23.478261
def _vector_coef_op_right(func): """decorator for operator overloading when VectorCoefs is on the right""" @wraps(func) def verif(self, vcoef): if isinstance(vcoef, numbers.Number): return VectorCoefs(func(self, self.scoef1._vec, vcoef), ...	[ "def", "_vector_coef_op_right", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "verif", "(", "self", ",", "vcoef", ")", ":", "if", "isinstance", "(", "vcoef", ",", "numbers", ".", "Number", ")", ":", "return", "VectorCoefs", "(", "func",...	43.416667	15.25
def reduce_cuda(g, x, axes, dtype): """Reductions in CUDA use the thrust library for speed and have limited functionality.""" if axes != 0: raise NotImplementedError("'axes' keyword is not implemented for CUDA") return g(x, dtype=dtype)	[ "def", "reduce_cuda", "(", "g", ",", "x", ",", "axes", ",", "dtype", ")", ":", "if", "axes", "!=", "0", ":", "raise", "NotImplementedError", "(", "\"'axes' keyword is not implemented for CUDA\"", ")", "return", "g", "(", "x", ",", "dtype", "=", "dtype", ")...	36.857143	17
def connect_to_agent(env=None, sp=subprocess): """Connect to GPG agent's UNIX socket.""" sock_path = get_agent_sock_path(sp=sp, env=env) # Make sure the original gpg-agent is running. check_output(args=['gpg-connect-agent', '/bye'], sp=sp) sock = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) ...	[ "def", "connect_to_agent", "(", "env", "=", "None", ",", "sp", "=", "subprocess", ")", ":", "sock_path", "=", "get_agent_sock_path", "(", "sp", "=", "sp", ",", "env", "=", "env", ")", "# Make sure the original gpg-agent is running.", "check_output", "(", "args",...	44.125	13
def login(self, username, password, strict=True): """ Login as specified user Args: username (str): The username to log in with password (str): The password for the user strict (bool): `True` to thow an error on failure Returns: ...	[ "def", "login", "(", "self", ",", "username", ",", "password", ",", "strict", "=", "True", ")", ":", "# get login token", "params", "=", "{", "\"action\"", ":", "\"query\"", ",", "\"meta\"", ":", "\"tokens\"", ",", "\"type\"", ":", "\"login\"", ",", "\"for...	34.326087	17.934783
def _mod_spec(self): """ Modified length specifiers: mapping between length modifiers and conversion specifiers. This generates all the possibilities, i.e. hhd, etc. """ mod_spec={} for mod, sizes in self.int_len_mod.items(): for conv in self.int_sign['signe...	[ "def", "_mod_spec", "(", "self", ")", ":", "mod_spec", "=", "{", "}", "for", "mod", ",", "sizes", "in", "self", ".", "int_len_mod", ".", "items", "(", ")", ":", "for", "conv", "in", "self", ".", "int_sign", "[", "'signed'", "]", ":", "mod_spec", "[...	30.125	21.375
def is_format_supported(self, format_p): """Checks if a specific drag'n drop MIME / Content-type format is supported. in format_p of type str Format to check for. return supported of type bool Returns @c true if the specified format is supported, @c false if not. ...	[ "def", "is_format_supported", "(", "self", ",", "format_p", ")", ":", "if", "not", "isinstance", "(", "format_p", ",", "basestring", ")", ":", "raise", "TypeError", "(", "\"format_p can only be an instance of type basestring\"", ")", "supported", "=", "self", ".", ...	37.266667	17.466667
def conc(self,H=70.,Om=0.3,overdens=200.,wrtcrit=False, ro=None,vo=None): """ NAME: conc PURPOSE: return the concentration INPUT: H= (default: 70) Hubble constant in km/s/Mpc Om= (default: 0.3) Omega matter ...	[ "def", "conc", "(", "self", ",", "H", "=", "70.", ",", "Om", "=", "0.3", ",", "overdens", "=", "200.", ",", "wrtcrit", "=", "False", ",", "ro", "=", "None", ",", "vo", "=", "None", ")", ":", "if", "ro", "is", "None", ":", "ro", "=", "self", ...	30.512195	30.365854
def add_keyup_callback(self, key, fn): """ Allows for custom callback functions for the viewer. Called on key up. Parameter 'any' will ensure that the callback is called on any key up, and block default mujoco viewer callbacks from executing, except for the ESC callback to close...	[ "def", "add_keyup_callback", "(", "self", ",", "key", ",", "fn", ")", ":", "self", ".", "viewer", ".", "keyup", "[", "key", "]", ".", "append", "(", "fn", ")" ]	47.375	15.125
def _diff_and_summarize(from_csv, to_csv, index_columns, stream=sys.stdout, sep=',', ignored_columns=None, significance=None): """ Print a summary of the difference between the two files. """ from_records = list(records.load(from_csv, sep=sep)) to_records = records.load(to_cs...	[ "def", "_diff_and_summarize", "(", "from_csv", ",", "to_csv", ",", "index_columns", ",", "stream", "=", "sys", ".", "stdout", ",", "sep", "=", "','", ",", "ignored_columns", "=", "None", ",", "significance", "=", "None", ")", ":", "from_records", "=", "lis...	40.176471	18.411765
def get_prediction_path(self, node_id, missing_id = []): """ Return the prediction path from this node to the parent node. Parameters ---------- node_id : id of the node to get the prediction path. missing_id : Additional info that contains nodes with missing features...	[ "def", "get_prediction_path", "(", "self", ",", "node_id", ",", "missing_id", "=", "[", "]", ")", ":", "_raise_error_if_not_of_type", "(", "node_id", ",", "[", "int", ",", "long", "]", ",", "\"node_id\"", ")", "_numeric_param_check_range", "(", "\"node_id\"", ...	35.768293	15.036585
def node_contained_in_layer_area_validation(self): """ if layer defines an area, ensure node coordinates are contained in the area """ # if area is a polygon ensure it contains the node if self.layer and isinstance(self.layer.area, Polygon) and not self.layer.area.contains(self.geometry): ra...	[ "def", "node_contained_in_layer_area_validation", "(", "self", ")", ":", "# if area is a polygon ensure it contains the node", "if", "self", ".", "layer", "and", "isinstance", "(", "self", ".", "layer", ".", "area", ",", "Polygon", ")", "and", "not", "self", ".", ...	52.857143	22.285714
def apply_region_configs(env_config): """Override default env configs with region specific configs and nest all values under a region Args: env_config (dict): The environment specific config. Return: dict: Newly updated dictionary with region overrides applied. """ new_config =...	[ "def", "apply_region_configs", "(", "env_config", ")", ":", "new_config", "=", "env_config", ".", "copy", "(", ")", "for", "region", "in", "env_config", ".", "get", "(", "'regions'", ",", "REGIONS", ")", ":", "if", "isinstance", "(", "env_config", ".", "ge...	38.368421	20.052632
def compat_serializer_check_is_valid(serializer): """ http://www.django-rest-framework.org/topics/3.0-announcement/#using-is_validraise_exceptiontrue """ if DRFVLIST[0] >= 3: serializer.is_valid(raise_exception=True) else: if not serializer.is_valid(): serializers.ValidationError...	[ "def", "compat_serializer_check_is_valid", "(", "serializer", ")", ":", "if", "DRFVLIST", "[", "0", "]", ">=", "3", ":", "serializer", ".", "is_valid", "(", "raise_exception", "=", "True", ")", "else", ":", "if", "not", "serializer", ".", "is_valid", "(", ...	51.142857	15.857143
def vsub(v1, v2): """ Compute the difference between two 3-dimensional, double precision vectors. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/vsub_c.html :param v1: First vector (minuend). :type v1: 3-Element Array of floats :param v2: Second vector (subtrahend). :type v2...	[ "def", "vsub", "(", "v1", ",", "v2", ")", ":", "v1", "=", "stypes", ".", "toDoubleVector", "(", "v1", ")", "v2", "=", "stypes", ".", "toDoubleVector", "(", "v2", ")", "vout", "=", "stypes", ".", "emptyDoubleVector", "(", "3", ")", "libspice", ".", ...	31.526316	9.947368
def share( self, share_id: str, token: dict = None, augment: bool = False, prot: str = "https", ) -> dict: """Get information about a specific share and its applications. :param str token: API auth token :param str share_id: share UUID :param ...	[ "def", "share", "(", "self", ",", "share_id", ":", "str", ",", "token", ":", "dict", "=", "None", ",", "augment", ":", "bool", "=", "False", ",", "prot", ":", "str", "=", "\"https\"", ",", ")", "->", "dict", ":", "# passing auth parameter", "share_url"...	29.5	18.710526
def get_relativelinenumbertable(self): """ a sequence of (code_offset, line_number) pairs. Similar to the get_linenumbertable method, but the line numbers start at 0 (they are relative to the method, not to the class file) """ lnt = self.get_linenumbertable() if ...	[ "def", "get_relativelinenumbertable", "(", "self", ")", ":", "lnt", "=", "self", ".", "get_linenumbertable", "(", ")", "if", "lnt", ":", "lineoff", "=", "lnt", "[", "0", "]", "[", "1", "]", "return", "tuple", "(", "(", "o", ",", "l", "-", "lineoff", ...	34.307692	16.769231
def NewWalker(self, reader): """Setup an xmltextReader to parse a preparsed XML document. This reuses the existing @reader xmlTextReader. """ if reader is None: reader__o = None else: reader__o = reader._o ret = libxml2mod.xmlReaderNewWalker(reader__o, self._o) return ...	[ "def", "NewWalker", "(", "self", ",", "reader", ")", ":", "if", "reader", "is", "None", ":", "reader__o", "=", "None", "else", ":", "reader__o", "=", "reader", ".", "_o", "ret", "=", "libxml2mod", ".", "xmlReaderNewWalker", "(", "reader__o", ",", "self",...	45.285714	9.285714
def apply_to(self, x, columns=False): """Apply this translation to the given object The argument can be several sorts of objects: * ``np.array`` with shape (3, ) * ``np.array`` with shape (N, 3) * ``np.array`` with shape (3, N), use ``columns=True`` * ``T...	[ "def", "apply_to", "(", "self", ",", "x", ",", "columns", "=", "False", ")", ":", "if", "isinstance", "(", "x", ",", "np", ".", "ndarray", ")", "and", "len", "(", "x", ".", "shape", ")", "==", "2", "and", "x", ".", "shape", "[", "0", "]", "==...	41.5	18.852941
def _check_once(self): """A single attempt to call ismaster. Returns a ServerDescription, or raises an exception. """ address = self._server_description.address if self._publish: self._listeners.publish_server_heartbeat_started(address) with self._pool.get_so...	[ "def", "_check_once", "(", "self", ")", ":", "address", "=", "self", ".", "_server_description", ".", "address", "if", "self", ".", "_publish", ":", "self", ".", "_listeners", ".", "publish_server_heartbeat_started", "(", "address", ")", "with", "self", ".", ...	40.5	17.9
def features(self): """All available features""" mycols = [] for col in dfn.feature_names: if col in self: mycols.append(col) mycols.sort() return mycols	[ "def", "features", "(", "self", ")", ":", "mycols", "=", "[", "]", "for", "col", "in", "dfn", ".", "feature_names", ":", "if", "col", "in", "self", ":", "mycols", ".", "append", "(", "col", ")", "mycols", ".", "sort", "(", ")", "return", "mycols" ]	26.75	12.75
def _refit_islands(self, group, stage, outerclip=None, istart=0): """ Do island refitting (priorized fitting) on a group of islands. Parameters ---------- group : list A list of components grouped by island. stage : int Refitting stage. ...	[ "def", "_refit_islands", "(", "self", ",", "group", ",", "stage", ",", "outerclip", "=", "None", ",", "istart", "=", "0", ")", ":", "global_data", "=", "self", ".", "global_data", "sources", "=", "[", "]", "data", "=", "global_data", ".", "data_pix", "...	49.068273	25.212851
def cget(self, item): """Return the value of an option""" return getattr(self, "_" + item) if item in self.options else ttk.Frame.cget(self, item)	[ "def", "cget", "(", "self", ",", "item", ")", ":", "return", "getattr", "(", "self", ",", "\"_\"", "+", "item", ")", "if", "item", "in", "self", ".", "options", "else", "ttk", ".", "Frame", ".", "cget", "(", "self", ",", "item", ")" ]	53.333333	25
def crypto_secretstream_xchacha20poly1305_push( state, m, ad=None, tag=crypto_secretstream_xchacha20poly1305_TAG_MESSAGE, ): """ Add an encrypted message to the secret stream. :param state: a secretstream state object :type state: crypto_secretstream_xchacha20poly1305_state :param m...	[ "def", "crypto_secretstream_xchacha20poly1305_push", "(", "state", ",", "m", ",", "ad", "=", "None", ",", "tag", "=", "crypto_secretstream_xchacha20poly1305_TAG_MESSAGE", ",", ")", ":", "ensure", "(", "isinstance", "(", "state", ",", "crypto_secretstream_xchacha20poly13...	31.241935	23.241935
def _checkAuth(self, message, server_url): """Make a check_authentication request to verify this message. @returns: True if the request is valid. @rtype: bool """ logging.info('Using OpenID check_authentication') request = self._createCheckAuthRequest(message) if...	[ "def", "_checkAuth", "(", "self", ",", "message", ",", "server_url", ")", ":", "logging", ".", "info", "(", "'Using OpenID check_authentication'", ")", "request", "=", "self", ".", "_createCheckAuthRequest", "(", "message", ")", "if", "request", "is", "None", ...	38.333333	17.611111
def sort_by_formula_id(raw_datasets): """ Sort a list of formulas by `id`, where `id` represents the accepted formula id. Parameters ---------- raw_datasets : list of dictionaries A list of raw datasets. Examples -------- The parameter `raw_datasets` has to be of the format...	[ "def", "sort_by_formula_id", "(", "raw_datasets", ")", ":", "by_formula_id", "=", "defaultdict", "(", "list", ")", "for", "el", "in", "raw_datasets", ":", "by_formula_id", "[", "el", "[", "'handwriting'", "]", ".", "formula_id", "]", ".", "append", "(", "el"...	31.371429	15.657143
def _verify_dict_list(self, values, keys, name): '''Validate a list of `dict`, ensuring it has specific keys and no others. :param values: A list of `dict` to validate. :param keys: A list of keys to validate each `dict` against. :param name: Name describing the values, to show ...	[ "def", "_verify_dict_list", "(", "self", ",", "values", ",", "keys", ",", "name", ")", ":", "keys", "=", "set", "(", "keys", ")", "name", "=", "name", ".", "title", "(", ")", "for", "value", "in", "values", ":", "if", "not", "isinstance", "(", "val...	43.636364	17.363636
def squared_error(eval_data, predictions, scores='ignored', learner='ignored'): ''' Return the squared error of each prediction in `predictions` with respect to the correct output in `eval_data`. >>> data = [Instance('input', (0., 0., 1.)), ... Instance('input', (0., 1., 1.)), ... ...	[ "def", "squared_error", "(", "eval_data", ",", "predictions", ",", "scores", "=", "'ignored'", ",", "learner", "=", "'ignored'", ")", ":", "return", "[", "np", ".", "sum", "(", "(", "np", ".", "array", "(", "pred", ")", "-", "np", ".", "array", "(", ...	43.769231	23.307692

def parse_duration(duration): """Attepmts to parse an ISO8601 formatted ``duration``. Returns a ``datetime.timedelta`` object. """ duration = str(duration).upper().strip() elements = ELEMENTS.copy() for pattern in (SIMPLE_DURATION, COMBINED_DURATION): if pattern.match(duration): ...

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37.846154

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def add_setting(self, name, value): ''' Adds a database setting that will be sent with every request. For example, `db.add_setting("max_execution_time", 10)` will limit query execution time to 10 seconds. The name must be string, and the value is converted to string in case ...

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def delete(self): """Stop the profiler.""" CProfileWrapper.profiler.disable() self.running = False self.set_status(204) self.finish()

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def from_shorthand(self, shorthand): """Convert from traditional Helmhotz pitch notation. Examples: >>> Note().from_shorthand("C,,") 'C-0' >>> Note().from_shorthand("C") 'C-2' >>> Note().from_shorthand("c'") 'C-4' """ name = '' oct...

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def pad(self, sid, date): """ Fill sid container with empty data through the specified date. If the last recorded trade is not at the close, then that day will be padded with zeros until its close. Any day after that (up to and including the specified date) will be padded with `...

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def make_random_histogram(center=0.0, stdev=default_stdev, length=default_feature_dim, num_bins=default_num_bins): "Returns a sequence of histogram density values that sum to 1.0" hist, bin_edges = np.histogram(get_distr(center, stdev, length), range=edge_range, bins=num_bins...

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def wraps(self, f): """Wrap a function for retrying. :param f: A function to wraps for retrying. """ @_utils.wraps(f) def wrapped_f(*args, **kw): return self.call(f, *args, **kw) def retry_with(*args, **kwargs): return self.copy(*args, **kwargs)....

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def verify_dataset(): """Perform checks on experimental datasets""" parser = verify_dataset_parser() args = parser.parse_args() path_in = pathlib.Path(args.path).resolve() viol, aler, info = load.check_dataset(path_in) print_info("Checking {}".format(path_in)) for inf in info: print_...

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def create_datastore_from_yaml_schema(self, yaml_path, delete_first=0, path=None): # type: (str, Optional[int], Optional[str]) -> None """For tabular data, create a resource in the HDX datastore which enables data preview in HDX from a YAML file containi...

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def get_app_model_voice(self, app_model_item): """ App Model voice Returns the js menu compatible voice dict if the user can see it, None otherwise """ if app_model_item.get('name', None) is None: raise ImproperlyConfigured('Model menu voices must have a name ...

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def place_docker(self, docker, area='top'): """ IN DEVELOPMENT Places a DockWindow instance at the specified area ('top', 'bottom', 'left', 'right', or None) """ # map of options m = dict(top = _g.QtCore.Qt.TopDockWidgetArea, bottom = ...

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def set_autosession(self, value=None): """ Turn autosession (automatic committing after each modification call) on/off. If value is None, only query the current value (don't change anything). """ if value is not None: self.rollback() self.autosession = val...

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def encodeEntitiesReentrant(self, input): """Do a global encoding of a string, replacing the predefined entities and non ASCII values with their entities and CharRef counterparts. Contrary to xmlEncodeEntities, this routine is reentrant, and result must be deallocated. """ ...

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def add_genes(in_file, data, max_distance=10000, work_dir=None): """Add gene annotations to a BED file from pre-prepared RNA-seq data. max_distance -- only keep annotations within this distance of event """ gene_file = regions.get_sv_bed(data, "exons", out_dir=os.path.dirname(in_file)) if gene_file...

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def convert_frames_to_video(tar_file_path, output_path="output.mp4", framerate=60, overwrite=False): """ Try to convert a tar file containing a sequence of frames saved by the meshcat viewer into a single video file. This relies on having `ffmpeg` installed on your system. """ output_path = os....

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def _pelita_member_filter(parent_name, item_names): """ Filter a list of autodoc items for which to generate documentation. Include only imports that come from the documented module or its submodules. """ filtered_names = [] if parent_name not in sys.modules: return item_names ...

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def start(name): # type: (str) -> None """ Start working on a new feature by branching off develop. This will create a new branch off develop called feature/<name>. Args: name (str): The name of the new feature. """ branch = git.current_branch(refresh=True) task_branch ...

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def _validate_organization_data(organization_data): """ Validation helper """ if not validators.organization_data_is_valid(organization_data): exceptions.raise_exception( "Organization", organization_data, exceptions.InvalidOrganizationException )

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37.5

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def cast(self, dtype): """Cast data and gradient of this Parameter to a new data type. Parameters ---------- dtype : str or numpy.dtype The new data type. """ self.dtype = dtype if self._data is None: return with autograd.pause(): ...

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def format_person_name(text): """Capitalize first letter for each part of the name. Example:: person_name = "James Bond" **中文文档** 将文本修改为人名格式。每个单词的第一个字母大写。 """ text = text.strip() if len(text) == 0: # if empty string, return it return text else: text = text.lo...

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def add_collaboration(self, collaboration): """Add collaboration. :param collaboration: collaboration for the current document :type collaboration: string """ collaborations = normalize_collaboration(collaboration) for collaboration in collaborations: self._a...

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35.636364

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def is_colliding(self, other): """Check to see if two circles are colliding.""" if isinstance(other, BoundingCircle): #Calculate the distance between two circles. distance = Vector2.distance(self.coords, other.coords) #Check to see if the sum of thier radi are greate...

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def inverse_transform(self, X): """Transform data back to its original space. Returns an array X_original whose transform would be X. Parameters ---------- X : array-like, shape (n_samples, n_components) New data, where n_samples in the number of samples ...

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def prepare_table(table): """Make the table 'symmetric' where the lower left part of the matrix is the reverse probability """ n = len(table) for i, row in enumerate(table): assert len(row) == n for j, el in enumerate(row): if i == j: table[i][i] = 0.0 ...

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def deliver(self, project, new_project_name, to_user, share_users, force_send, path_filter, user_message): """ Remove access to project_name for to_user, copy to new_project_name if not None, send message to service to email user so they can have access. :param project: RemoteProject pre...

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def Hakim_Steinberg_Stiel(T, Tc, Pc, omega, StielPolar=0): r'''Calculates air-water surface tension using the reference fluids methods of [1]_. .. math:: \sigma = 4.60104\times 10^{-7} P_c^{2/3}T_c^{1/3}Q_p \left(\frac{1-T_r}{0.4}\right)^m Q_p = 0.1574+0.359\omega-1.769\chi-13.69\chi^2-0.5...

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def to_vcf(in_tsv, data): """Convert seq2c output file into BED output. """ call_convert = {"Amp": "DUP", "Del": "DEL"} out_file = "%s.vcf" % utils.splitext_plus(in_tsv)[0] if not utils.file_uptodate(out_file, in_tsv): with file_transaction(data, out_file) as tx_out_file: with op...

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def delete(self, obj): """Required functionality.""" del_id = obj.get_id() if not del_id: return cur = self._conn().cursor() tabname = obj.__class__.get_table_name() query = 'delete from %s where id = ?' % tabname cur.execute(query, (del_id,)) ...

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def logout(cache): """ Logs out the current session by removing it from the cache. This is expected to only occur when a session has """ cache.set(flask.session['auth0_key'], None) flask.session.clear() return True

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def from_dict(cls, d, encoding='base64'): ''' Construct a ``Report`` object from dictionary. :type d: dictionary :param d: dictionary representing the report :param encoding: encoding of strings in the dictionary (default: 'base64') :return: Report object ''' ...

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def delete_GitHub_token(token_id, *, auth, headers): """Delete a temporary GitHub token""" r = requests.delete('https://api.github.com/authorizations/{id}'.format(id=token_id), auth=auth, headers=headers) GitHub_raise_for_status(r)

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def api_request(api_base_url='http://localhost:8080/', path='', method='get', data=None, params={}, verify=True, cert=list()): """ Wrapper function for requests :param api_base_url: Base URL for requests :param path: Path to request :param method: HTTP method :param data: Data for post (ign...

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def get_context_dict(self): """ return a context dict of the desired state """ context_dict = {} for s in self.sections(): for k, v in self.manifest.items(s): context_dict["%s:%s" % (s, k)] = v for k, v in self.inputs.values().items(): context_dict...

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def apply_custom_filter(self, filter_func, to_ngrams=False): """ Apply a custom filter function `filter_func` to all tokens or ngrams (if `to_ngrams` is True). `filter_func` must accept a single parameter: a dictionary of structure `{<doc_label>: <tokens list>}`. It must return a diction...

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def get_num_nodes(properties=None, hadoop_conf_dir=None, offline=False): """ Get the number of task trackers in the Hadoop cluster. All arguments are passed to :func:`get_task_trackers`. """ return len(get_task_trackers(properties, hadoop_conf_dir, offline))

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def contains_vasp_input(dir_name): """ Checks if a directory contains valid VASP input. Args: dir_name: Directory name to check. Returns: True if directory contains all four VASP input files (INCAR, POSCAR, KPOINTS and POTCAR). """ for f in ["INCAR", "POSCAR...

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def filter_callbacks(cls, client, event_data): """Filter registered events and yield all of their callbacks.""" for event in cls.filter_events(client, event_data): for cb in event.callbacks: yield cb

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def fit_bristow_campbell_params(tmin, tmax, pot_rad_daily, obs_rad_daily): """ Fit the A and C parameters for the Bristow & Campbell (1984) model using observed daily minimum and maximum temperature and mean daily (e.g. aggregated from hourly values) solar radiation. Parameters ---------...

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def Dropout(p=0, per_channel=False, name=None, deterministic=False, random_state=None): """ Augmenter that sets a certain fraction of pixels in images to zero. dtype support:: See ``imgaug.augmenters.arithmetic.MultiplyElementwise``. Parameters ---------- p : float or tuple of float o...

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def html_to_text(html, base_url='', bodywidth=CONFIG_DEFAULT): """ Convert a HTML mesasge to plain text. """ def _patched_handle_charref(c): self = h charref = self.charref(c) if self.code or self.pre: charref = cgi.escape(charref) self.o(charref, 1) def ...

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def get_es_label(obj, def_obj): """ Returns object with label for an object that goes into the elacticsearch 'label' field args: obj: data object to update def_obj: the class instance that has defintion values """ label_flds = LABEL_FIELDS if def_obj.es_defs.get('kds_esLabel...

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def harvest_fundref(source=None): """Harvest funders from FundRef and store as authority records.""" loader = LocalFundRefLoader(source=source) if source \ else RemoteFundRefLoader() for funder_json in loader.iter_funders(): register_funder.delay(funder_json)

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def _qkey_to_ascii(event): """ (Try to) convert the Qt key event to the corresponding ASCII sequence for the terminal. This works fine for standard alphanumerical characters, but most other characters require terminal specific control_modifier sequences. The conversion below works for TERM="linux' t...

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def build_stack_docs(root_project_dir, skippedNames=None): """Build stack Sphinx documentation (main entrypoint). Parameters ---------- root_project_dir : `str` Path to the root directory of the main documentation project. This is the directory containing the ``conf.py`` file. skipp...

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def init_from_acceptor(self, acceptor): """ Adds a sink state Args: alphabet (list): The input alphabet Returns: None """ self.states = copy.deepcopy(acceptor.states) self.alphabet = copy.deepcopy(acceptor.alphabet) self.osyms = cop...

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def main(*kw): """Command line entry point; arguments must match those defined in in :meth:`create_parser()`; returns 0 for success, else 1. Example:: command.main("-i", "**/*.py", "--no-default-excludes") Runs formic printing out all .py files in the current working directory and its child...

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def non_structured_query(table, query=None, **kwargs): ''' Run a non-structed (not a dict) query on a servicenow table. See http://wiki.servicenow.com/index.php?title=Encoded_Query_Strings#gsc.tab=0 for help on constructing a non-structured query string. :param table: The table name, e.g. sys_user ...

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def rubles(amount, zero_for_kopeck=False): """Converts float value to in-words representation (for money)""" try: res = numeral.rubles(amount, zero_for_kopeck) except Exception as err: # because filter must die silently res = default_value % {'error': err, 'value': str(amount)} r...

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def many(cls, filter=None, **kwargs): """Return a list of documents matching the filter""" from mongoframes.queries import Condition, Group, to_refs # Flatten the projection kwargs['projection'], references, subs = \ cls._flatten_projection( kwargs.ge...

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def generate_key(s, pattern="%s.txt"): """ Generates the cache key for the given string using the content in pattern to format the output string """ h = hashlib.sha1() #h.update(s) h.update(s.encode('utf-8')) return pattern % h.hexdigest()

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def do_cmd_private_sub(self, cmd): '''Remove certificate and key output archived by sosreport. cmd is the command name from which output is collected (i.e. exlcuding parameters). Any matching instances are replaced with: '-----SCRUBBED' and this function does not take a regexp or substit...

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def getLoginMethods(store, protocol=None): """ Retrieve L{LoginMethod} items from store C{store}, optionally constraining them by protocol """ if protocol is not None: comp = OR(LoginMethod.protocol == u'*', LoginMethod.protocol == protocol) else: comp = None ...

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def create_criteria(cls, query): """Return a criteria from a dictionary containing a query. Query should be a dictionary, keyed by field name. If the value is a list, it will be divided into multiple criteria as required. """ criteria = [] for name, value in query.items(...

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def set_preferences(self, user=None, **kwargs): """Set preferences from keyword arguments.""" if user is None: user = current_user d = {pref.key: pref for pref in user.preferences} for k, v in kwargs.items(): if k in d: d[k].value = v ...

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def sign(self, authenticator): """Sign this OMAPI message. @type authenticator: OmapiAuthenticatorBase """ self.authid = authenticator.authid self.signature = b"\0" * authenticator.authlen # provide authlen self.signature = authenticator.sign(self.as_string(forsigning=True)) assert len(self.signature) ==...

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def filter_correlation(self, x_analyte, y_analyte, window=15, r_threshold=0.9, p_threshold=0.05, filt=True, recalc=False): """ Calculate correlation filter. Parameters ---------- x_analyte, y_analyte : str The names of the x and y analytes ...

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def image1(d, u, v, w, dmind, dtind, beamnum, irange): """ Parallelizable function for imaging a chunk of data for a single dm. Assumes data is dedispersed and resampled, so this just images each integration. Simple one-stage imaging that returns dict of params. returns dictionary with keys of cand loca...

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def _create_filenames(filename_schema, feed_type): """ Returns a dictionary of beam filename pairs, keyed on correlation,from the cartesian product of correlations and real, imaginary pairs Given 'beam_$(corr)_$(reim).fits' returns: { 'xx' : ('beam_xx_re.fits', 'beam_xx_im.fits'), '...

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def to_json(self): """ called by VersionEncoder.default() when doing json.dumps() on the object the json materializes in reverse order from the order used here """ return { "build_number": self._build_number, "commit_hash": self._commit_hash, "last_modified": self._last_modif...

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def create(self, messaging_service_sid, friendly_name=values.unset, attributes=values.unset, date_created=values.unset, date_updated=values.unset, created_by=values.unset): """ Create a new SessionInstance :param unicode messaging_service_sid: The unique id of the ...

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def _init_virtual_io(self, file): """Initialize callback functions for sf_open_virtual().""" @_ffi.callback("sf_vio_get_filelen") def vio_get_filelen(user_data): curr = file.tell() file.seek(0, SEEK_END) size = file.tell() file.seek(curr, SEEK_SET)...

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def raw(self, query: Any, data: Any = None): """Run raw query on Repository. For this stand-in repository, the query string is a json string that contains kwargs criteria with straigh-forward equality checks. Individual criteria are always ANDed and the result is always a subset of the ...

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def empty(): """ Create an empty set. """ if not hasattr(empty, '_instance'): empty._instance = Interval(AtomicInterval(OPEN, inf, -inf, OPEN)) return empty._instance

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def _transform_params(self, **params): """Applies all transforms to the given params. Parameters ---------- \**params : Key, value pairs of parameters to apply the transforms to. Returns ------- dict A dictionary of the transformed parame...

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def display_url(target): """Displaying URL in an IPython notebook to allow the user to click and check on information. With thanks to Fernando Perez for putting together the implementation! :param target: the url to display. :type target: string.""" prefix = u"http://" if not target.startswith("http") ...

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def create_metrics(self, configs: Iterable[MetricConfig]) -> Dict[str, Metric]: """Create Prometheus metrics from a list of MetricConfigs.""" metrics: Dict[str, Metric] = { config.name: self._register_metric(config) for config in configs } s...

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def signature(self): "Instance file name" kw = self.get_params() keys = sorted(kw.keys()) l = [] for k in keys: n = k[0] + k[-1] v = kw[k] if k == 'function_set': v = "_".join([x.__name__[0] + x.__n...

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def imrphenomc_tmplt(**kwds): """ Return an IMRPhenomC waveform using CUDA to generate the phase and amplitude Main Paper: arXiv:1005.3306 """ # Pull out the input arguments f_min = float128(kwds['f_lower']) f_max = float128(kwds['f_final']) delta_f = float128(kwds['delta_f']) distance...

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def trim(self, lower=None, upper=None): """Trim values in accordance with :math:`BoWa \\leq NFk`. >>> from hydpy.models.lland import * >>> parameterstep('1d') >>> nhru(5) >>> nfk(200.) >>> states.bowa(-100.,0., 100., 200., 300.) >>> states.bowa bowa(0.0, ...

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def default(self, o): """Implement this method in a subclass such that it returns a serializable object for ``o``, or calls the base implementation (to raise a ``TypeError``). For example, to support arbitrary iterators, you could implement default like this:: def d...

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def delete_file(self, target, path): """Delete a file from a device :param target: The device(s) to be targeted with this request :type target: :class:`devicecloud.sci.TargetABC` or list of :class:`devicecloud.sci.TargetABC` instances :param path: The path on the target to the file to d...

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def _set_active_tools(self, plot): "Activates the list of active tools" for tool in self.active_tools: if isinstance(tool, util.basestring): tool_type = TOOL_TYPES[tool] matching = [t for t in plot.toolbar.tools if isinstance(t, too...

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def asyncPipeStrconcat(context=None, _INPUT=None, conf=None, **kwargs): """A string module that asynchronously builds a string. Loopable. No direct input. Parameters ---------- context : pipe2py.Context object _INPUT : asyncPipe like object (twisted Deferred iterable of items) conf : { ...

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def _vector_coef_op_right(func): """decorator for operator overloading when VectorCoefs is on the right""" @wraps(func) def verif(self, vcoef): if isinstance(vcoef, numbers.Number): return VectorCoefs(func(self, self.scoef1._vec, vcoef), ...

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def reduce_cuda(g, x, axes, dtype): """Reductions in CUDA use the thrust library for speed and have limited functionality.""" if axes != 0: raise NotImplementedError("'axes' keyword is not implemented for CUDA") return g(x, dtype=dtype)

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def connect_to_agent(env=None, sp=subprocess): """Connect to GPG agent's UNIX socket.""" sock_path = get_agent_sock_path(sp=sp, env=env) # Make sure the original gpg-agent is running. check_output(args=['gpg-connect-agent', '/bye'], sp=sp) sock = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) ...

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def login(self, username, password, strict=True): """ Login as specified user Args: username (str): The username to log in with password (str): The password for the user strict (bool): `True` to thow an error on failure Returns: ...

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def _mod_spec(self): """ Modified length specifiers: mapping between length modifiers and conversion specifiers. This generates all the possibilities, i.e. hhd, etc. """ mod_spec={} for mod, sizes in self.int_len_mod.items(): for conv in self.int_sign['signe...

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def is_format_supported(self, format_p): """Checks if a specific drag'n drop MIME / Content-type format is supported. in format_p of type str Format to check for. return supported of type bool Returns @c true if the specified format is supported, @c false if not. ...

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def conc(self,H=70.,Om=0.3,overdens=200.,wrtcrit=False, ro=None,vo=None): """ NAME: conc PURPOSE: return the concentration INPUT: H= (default: 70) Hubble constant in km/s/Mpc Om= (default: 0.3) Omega matter ...

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def add_keyup_callback(self, key, fn): """ Allows for custom callback functions for the viewer. Called on key up. Parameter 'any' will ensure that the callback is called on any key up, and block default mujoco viewer callbacks from executing, except for the ESC callback to close...

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def _diff_and_summarize(from_csv, to_csv, index_columns, stream=sys.stdout, sep=',', ignored_columns=None, significance=None): """ Print a summary of the difference between the two files. """ from_records = list(records.load(from_csv, sep=sep)) to_records = records.load(to_cs...

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def get_prediction_path(self, node_id, missing_id = []): """ Return the prediction path from this node to the parent node. Parameters ---------- node_id : id of the node to get the prediction path. missing_id : Additional info that contains nodes with missing features...

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def node_contained_in_layer_area_validation(self): """ if layer defines an area, ensure node coordinates are contained in the area """ # if area is a polygon ensure it contains the node if self.layer and isinstance(self.layer.area, Polygon) and not self.layer.area.contains(self.geometry): ra...

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def apply_region_configs(env_config): """Override default env configs with region specific configs and nest all values under a region Args: env_config (dict): The environment specific config. Return: dict: Newly updated dictionary with region overrides applied. """ new_config =...

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def compat_serializer_check_is_valid(serializer): """ http://www.django-rest-framework.org/topics/3.0-announcement/#using-is_validraise_exceptiontrue """ if DRFVLIST[0] >= 3: serializer.is_valid(raise_exception=True) else: if not serializer.is_valid(): serializers.ValidationError...

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def vsub(v1, v2): """ Compute the difference between two 3-dimensional, double precision vectors. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/vsub_c.html :param v1: First vector (minuend). :type v1: 3-Element Array of floats :param v2: Second vector (subtrahend). :type v2...

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def share( self, share_id: str, token: dict = None, augment: bool = False, prot: str = "https", ) -> dict: """Get information about a specific share and its applications. :param str token: API auth token :param str share_id: share UUID :param ...

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def get_relativelinenumbertable(self): """ a sequence of (code_offset, line_number) pairs. Similar to the get_linenumbertable method, but the line numbers start at 0 (they are relative to the method, not to the class file) """ lnt = self.get_linenumbertable() if ...

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def NewWalker(self, reader): """Setup an xmltextReader to parse a preparsed XML document. This reuses the existing @reader xmlTextReader. """ if reader is None: reader__o = None else: reader__o = reader._o ret = libxml2mod.xmlReaderNewWalker(reader__o, self._o) return ...

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def apply_to(self, x, columns=False): """Apply this translation to the given object The argument can be several sorts of objects: * ``np.array`` with shape (3, ) * ``np.array`` with shape (N, 3) * ``np.array`` with shape (3, N), use ``columns=True`` * ``T...

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def _check_once(self): """A single attempt to call ismaster. Returns a ServerDescription, or raises an exception. """ address = self._server_description.address if self._publish: self._listeners.publish_server_heartbeat_started(address) with self._pool.get_so...

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def features(self): """All available features""" mycols = [] for col in dfn.feature_names: if col in self: mycols.append(col) mycols.sort() return mycols

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def _refit_islands(self, group, stage, outerclip=None, istart=0): """ Do island refitting (priorized fitting) on a group of islands. Parameters ---------- group : list A list of components grouped by island. stage : int Refitting stage. ...

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def cget(self, item): """Return the value of an option""" return getattr(self, "_" + item) if item in self.options else ttk.Frame.cget(self, item)

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def crypto_secretstream_xchacha20poly1305_push( state, m, ad=None, tag=crypto_secretstream_xchacha20poly1305_TAG_MESSAGE, ): """ Add an encrypted message to the secret stream. :param state: a secretstream state object :type state: crypto_secretstream_xchacha20poly1305_state :param m...

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def _checkAuth(self, message, server_url): """Make a check_authentication request to verify this message. @returns: True if the request is valid. @rtype: bool """ logging.info('Using OpenID check_authentication') request = self._createCheckAuthRequest(message) if...

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def sort_by_formula_id(raw_datasets): """ Sort a list of formulas by `id`, where `id` represents the accepted formula id. Parameters ---------- raw_datasets : list of dictionaries A list of raw datasets. Examples -------- The parameter `raw_datasets` has to be of the format...

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def _verify_dict_list(self, values, keys, name): '''Validate a list of `dict`, ensuring it has specific keys and no others. :param values: A list of `dict` to validate. :param keys: A list of keys to validate each `dict` against. :param name: Name describing the values, to show ...

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def squared_error(eval_data, predictions, scores='ignored', learner='ignored'): ''' Return the squared error of each prediction in `predictions` with respect to the correct output in `eval_data`. >>> data = [Instance('input', (0., 0., 1.)), ... Instance('input', (0., 1., 1.)), ... ...

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