kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def inner_join_impl(other, sequence): """ Implementation for part of join_impl :param other: other sequence to join with :param sequence: first sequence to join with :return: joined sequence """ seq_dict = {} for element in sequence: seq_dict[element[0]] = element[1] seq_kv =...	[ "def", "inner_join_impl", "(", "other", ",", "sequence", ")", ":", "seq_dict", "=", "{", "}", "for", "element", "in", "sequence", ":", "seq_dict", "[", "element", "[", "0", "]", "]", "=", "element", "[", "1", "]", "seq_kv", "=", "seq_dict", "other_kv",...	31.944444	10.944444
def remove_citation_metadata(graph): """Remove the metadata associated with a citation. Best practice is to add this information programmatically. """ for u, v, k in graph.edges(keys=True): if CITATION not in graph[u][v][k]: continue for key in list(graph[u][v][k][CITATION])...	[ "def", "remove_citation_metadata", "(", "graph", ")", ":", "for", "u", ",", "v", ",", "k", "in", "graph", ".", "edges", "(", "keys", "=", "True", ")", ":", "if", "CITATION", "not", "in", "graph", "[", "u", "]", "[", "v", "]", "[", "k", "]", ":"...	37.090909	10.454545
def get_as_string(self, s3_path, encoding='utf-8'): """ Get the contents of an object stored in S3 as string. :param s3_path: URL for target S3 location :param encoding: Encoding to decode bytes to string :return: File contents as a string """ content = self.get_...	[ "def", "get_as_string", "(", "self", ",", "s3_path", ",", "encoding", "=", "'utf-8'", ")", ":", "content", "=", "self", ".", "get_as_bytes", "(", "s3_path", ")", "return", "content", ".", "decode", "(", "encoding", ")" ]	36.8	10.8
def svd_entropy(X, Tau, DE, W=None): """Compute SVD Entropy from either two cases below: 1. a time series X, with lag tau and embedding dimension dE (default) 2. a list, W, of normalized singular values of a matrix (if W is provided, recommend to speed up.) If W is None, the function will do as fol...	[ "def", "svd_entropy", "(", "X", ",", "Tau", ",", "DE", ",", "W", "=", "None", ")", ":", "if", "W", "is", "None", ":", "Y", "=", "embed_seq", "(", "X", ",", "Tau", ",", "DE", ")", "W", "=", "numpy", ".", "linalg", ".", "svd", "(", "Y", ",", ...	33.787879	22.818182
def biopax_process_pc_neighborhood(): """Process PathwayCommons neighborhood, return INDRA Statements.""" if request.method == 'OPTIONS': return {} response = request.body.read().decode('utf-8') body = json.loads(response) genes = body.get('genes') bp = biopax.process_pc_neighborhood(gen...	[ "def", "biopax_process_pc_neighborhood", "(", ")", ":", "if", "request", ".", "method", "==", "'OPTIONS'", ":", "return", "{", "}", "response", "=", "request", ".", "body", ".", "read", "(", ")", ".", "decode", "(", "'utf-8'", ")", "body", "=", "json", ...	38.555556	8.444444
def dump_requestdriver_cookies_into_webdriver(requestdriver, webdriverwrapper, handle_sub_domain=True): """Adds all cookies in the RequestDriver session to Webdriver @type requestdriver: RequestDriver @param requestdriver: RequestDriver with cookies @type webdriverwrapper: WebDriverWrapper @param w...	[ "def", "dump_requestdriver_cookies_into_webdriver", "(", "requestdriver", ",", "webdriverwrapper", ",", "handle_sub_domain", "=", "True", ")", ":", "driver_hostname", "=", "urlparse", "(", "webdriverwrapper", ".", "current_url", "(", ")", ")", ".", "netloc", "for", ...	44.634146	21.219512
def generate_scan_parameter_description(scan_parameters): '''Generate scan parameter dictionary. This is the only way to dynamically create table with dictionary, cannot be done with tables.IsDescription Parameters ---------- scan_parameters : list, tuple List of scan parameters names (strings)...	[ "def", "generate_scan_parameter_description", "(", "scan_parameters", ")", ":", "table_description", "=", "np", ".", "dtype", "(", "[", "(", "key", ",", "tb", ".", "Int32Col", "(", "pos", "=", "idx", ")", ")", "for", "idx", ",", "key", "in", "enumerate", ...	39.157895	38.105263
def compare_version(a, b): # Ignore PyDocStyleBear """Compare two version strings. :param a: str :param b: str :return: -1 / 0 / 1 """ def _range(q): """Convert a version string to array of integers. "1.2.3" -> [1, 2, 3] :param q: str :return: List[int] ...	[ "def", "compare_version", "(", "a", ",", "b", ")", ":", "# Ignore PyDocStyleBear", "def", "_range", "(", "q", ")", ":", "\"\"\"Convert a version string to array of integers.\n\n \"1.2.3\" -> [1, 2, 3]\n\n :param q: str\n :return: List[int]\n \"\"\"", "r", ...	24.327273	17.836364
def address_to_coords(self, address): """Convert address to coordinates""" base_coords = self.BASE_COORDS[self.region] get_cord = self.COORD_SERVERS[self.region] url_options = { "q": address, "lang": "eng", "origin": "livemap", "lat": base...	[ "def", "address_to_coords", "(", "self", ",", "address", ")", ":", "base_coords", "=", "self", ".", "BASE_COORDS", "[", "self", ".", "region", "]", "get_cord", "=", "self", ".", "COORD_SERVERS", "[", "self", ".", "region", "]", "url_options", "=", "{", "...	47.038462	22.5
def get_trips( feed: "Feed", date: Optional[str] = None, time: Optional[str] = None ) -> DataFrame: """ Return a subset of ``feed.trips``. Parameters ---------- feed : Feed date : string YYYYMMDD date string time : string HH:MM:SS time string, possibly with HH > 23 ...	[ "def", "get_trips", "(", "feed", ":", "\"Feed\"", ",", "date", ":", "Optional", "[", "str", "]", "=", "None", ",", "time", ":", "Optional", "[", "str", "]", "=", "None", ")", "->", "DataFrame", ":", "if", "feed", ".", "trips", "is", "None", "or", ...	26.528302	20.264151
def by_tag_id(self,tag_id): '''Return all the semantic tag related to the given tag id :returns: a semantic tag or None :rtype: list of ckan.model.semantictag.SemanticTag object ''' query = meta.Session.query(TagSemanticTag).filter(TagSemanticTag.tag_id==tag_id) return query.first()	[ "def", "by_tag_id", "(", "self", ",", "tag_id", ")", ":", "query", "=", "meta", ".", "Session", ".", "query", "(", "TagSemanticTag", ")", ".", "filter", "(", "TagSemanticTag", ".", "tag_id", "==", "tag_id", ")", "return", "query", ".", "first", "(", ")...	32.111111	25.888889
def load_plugins(self, plugin_dirs=None, quiet=True): """ Load plugins in `sys.path` and :attr:`plugin_dirs` Parameters ---------- plugin_dirs : list or tuple of string, optional A list or tuple of plugin directory path quiet : bool, optional If T...	[ "def", "load_plugins", "(", "self", ",", "plugin_dirs", "=", "None", ",", "quiet", "=", "True", ")", ":", "from", "pkg_resources", "import", "working_set", "from", "pkg_resources", "import", "iter_entry_points", "from", "pkg_resources", "import", "Environment", "i...	35.707317	17.365854
def run_until_shutdown(self): ''' Run the Bokeh Server until shutdown is requested by the user, either via a Keyboard interrupt (Ctrl-C) or SIGTERM. Calling this method will start the Tornado ``IOLoop`` and block all execution in the calling process. Returns: None ...	[ "def", "run_until_shutdown", "(", "self", ")", ":", "if", "not", "self", ".", "_started", ":", "self", ".", "start", "(", ")", "# Install shutdown hooks", "atexit", ".", "register", "(", "self", ".", "_atexit", ")", "signal", ".", "signal", "(", "signal", ...	30.380952	20.095238
def max_placeable_height_on_deck(self, placeable): """ :param placeable: :return: Calibrated height of container in mm from deck as the reference point """ offset = placeable.top()[1] placeable_coordinate = add( pose_tracker.absolute( s...	[ "def", "max_placeable_height_on_deck", "(", "self", ",", "placeable", ")", ":", "offset", "=", "placeable", ".", "top", "(", ")", "[", "1", "]", "placeable_coordinate", "=", "add", "(", "pose_tracker", ".", "absolute", "(", "self", ".", "poses", ",", "plac...	33.625	13.625
def _hammer_function_precompute(self,x0, L, Min, model): """ Pre-computes the parameters of a penalizer centered at x0. """ if x0 is None: return None, None if len(x0.shape)==1: x0 = x0[None,:] m = model.predict(x0)[0] pred = model.predict(x0)[1].copy() pr...	[ "def", "_hammer_function_precompute", "(", "self", ",", "x0", ",", "L", ",", "Min", ",", "model", ")", ":", "if", "x0", "is", "None", ":", "return", "None", ",", "None", "if", "len", "(", "x0", ".", "shape", ")", "==", "1", ":", "x0", "=", "x0", ...	32.266667	10.266667
def _is_range_request_processable(self, environ): """Return ``True`` if `Range` header is present and if underlying resource is considered unchanged when compared with `If-Range` header. """ return ( "HTTP_IF_RANGE" not in environ or not is_resource_modified( ...	[ "def", "_is_range_request_processable", "(", "self", ",", "environ", ")", ":", "return", "(", "\"HTTP_IF_RANGE\"", "not", "in", "environ", "or", "not", "is_resource_modified", "(", "environ", ",", "self", ".", "headers", ".", "get", "(", "\"etag\"", ")", ",", ...	38.071429	10.785714
def tags_getListUserPopular(user_id='', count=''): """Gets the popular tags for a user in dictionary form tag=>count""" method = 'flickr.tags.getListUserPopular' auth = user_id == '' data = _doget(method, auth=auth, user_id=user_id) result = {} if isinstance(data.rsp.tags.tag, list): for...	[ "def", "tags_getListUserPopular", "(", "user_id", "=", "''", ",", "count", "=", "''", ")", ":", "method", "=", "'flickr.tags.getListUserPopular'", "auth", "=", "user_id", "==", "''", "data", "=", "_doget", "(", "method", ",", "auth", "=", "auth", ",", "use...	39.083333	12.75
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'name') and self.name is not None: _dict['name'] = self.name if hasattr(self, 'role') and self.role is not None: _dict['role'] = self.role return _dict	[ "def", "_to_dict", "(", "self", ")", ":", "_dict", "=", "{", "}", "if", "hasattr", "(", "self", ",", "'name'", ")", "and", "self", ".", "name", "is", "not", "None", ":", "_dict", "[", "'name'", "]", "=", "self", ".", "name", "if", "hasattr", "(",...	39	13.375
def parse_xml_report(cls, conf, path): """Parse the ivy xml report corresponding to the name passed to ivy. :API: public :param string conf: the ivy conf name (e.g. "default") :param string path: The path to the ivy report file. :returns: The info in the xml report. :rtype: :class:`IvyInfo` ...	[ "def", "parse_xml_report", "(", "cls", ",", "conf", ",", "path", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "path", ")", ":", "raise", "cls", ".", "IvyResolveReportError", "(", "'Missing expected ivy output file {}'", ".", "format", "(", ...	39.3	19.525
def metadataContributer(self): """gets the metadata featurelayer object""" if self._metaFL is None: fl = FeatureService(url=self._metadataURL, proxy_url=self._proxy_url, proxy_port=self._proxy_port) self._metaFS = fl ...	[ "def", "metadataContributer", "(", "self", ")", ":", "if", "self", ".", "_metaFL", "is", "None", ":", "fl", "=", "FeatureService", "(", "url", "=", "self", ".", "_metadataURL", ",", "proxy_url", "=", "self", ".", "_proxy_url", ",", "proxy_port", "=", "se...	42.125	11.25
def purge_items(app, env, docname): """ Clean, if existing, ``item`` entries in ``traceability_all_items`` environment variable, for all the source docs being purged. This function should be triggered upon ``env-purge-doc`` event. """ keys = list(env.traceability_all_items.keys()) for key ...	[ "def", "purge_items", "(", "app", ",", "env", ",", "docname", ")", ":", "keys", "=", "list", "(", "env", ".", "traceability_all_items", ".", "keys", "(", ")", ")", "for", "key", "in", "keys", ":", "if", "env", ".", "traceability_all_items", "[", "key",...	35.916667	18.916667
def get_tag_value(x, key): """Get a value from tag""" if x is None: return '' result = [y['Value'] for y in x if y['Key'] == key] if result: return result[0] return ''	[ "def", "get_tag_value", "(", "x", ",", "key", ")", ":", "if", "x", "is", "None", ":", "return", "''", "result", "=", "[", "y", "[", "'Value'", "]", "for", "y", "in", "x", "if", "y", "[", "'Key'", "]", "==", "key", "]", "if", "result", ":", "r...	24.5	18
def get_schedules_for_season(self, season, season_type="REG"): """ Game schedule for a specified season. """ try: season = int(season) if season_type not in ["REG", "PRE", "POST"]: raise ValueError except (ValueError, TypeError): ...	[ "def", "get_schedules_for_season", "(", "self", ",", "season", ",", "season_type", "=", "\"REG\"", ")", ":", "try", ":", "season", "=", "int", "(", "season", ")", "if", "season_type", "not", "in", "[", "\"REG\"", ",", "\"PRE\"", ",", "\"POST\"", "]", ":"...	38.357143	17.357143
def load_grid_data(file_list, data_type="binary", sort=True, delim=" "): """ Loads data from one or multiple grid_task files. Arguments: file_list - either a string or a list of strings indicating files to load data from. Files are assumed to be in grid_task.dat ...	[ "def", "load_grid_data", "(", "file_list", ",", "data_type", "=", "\"binary\"", ",", "sort", "=", "True", ",", "delim", "=", "\" \"", ")", ":", "# If there's only one file, we pretend it's a list", "if", "not", "type", "(", "file_list", ")", "is", "list", ":", ...	38.183333	20.35
def predict(self, test_data, **kwargs): """ Adjust new input by the values in the training data """ if test_data.shape[1]!=self.data.shape[1]: raise Exception("Test data has different number of columns than training data.") for i in xrange(0,test_data.shape[1]): ...	[ "def", "predict", "(", "self", ",", "test_data", ",", "", "", "kwargs", ")", ":", "if", "test_data", ".", "shape", "[", "1", "]", "!=", "self", ".", "data", ".", "shape", "[", "1", "]", ":", "raise", "Exception", "(", "\"Test data has different numbe...	48	16.363636
def one_vertical_total_stress(self, z_c): """ Determine the vertical total stress at a single depth z_c. :param z_c: depth from surface """ total_stress = 0.0 depths = self.depths end = 0 for layer_int in range(1, len(depths) + 1): l_index = l...	[ "def", "one_vertical_total_stress", "(", "self", ",", "z_c", ")", ":", "total_stress", "=", "0.0", "depths", "=", "self", ".", "depths", "end", "=", "0", "for", "layer_int", "in", "range", "(", "1", ",", "len", "(", "depths", ")", "+", "1", ")", ":",...	42.088235	20.5
def getFeatureID(self, location): """ Returns the feature index associated with the provided location. In the case of a sphere, it is always the same if the location is valid. """ if not self.contains(location): return self.EMPTY_FEATURE return self.SPHERICAL_SURFACE	[ "def", "getFeatureID", "(", "self", ",", "location", ")", ":", "if", "not", "self", ".", "contains", "(", "location", ")", ":", "return", "self", ".", "EMPTY_FEATURE", "return", "self", ".", "SPHERICAL_SURFACE" ]	29	17.2
def choices(self): """Menu options for new configuration files """ print("\| {0}K{1}{2}eep the old and .new files, no changes".format( self.red, self.endc, self.br)) print("\| {0}O{1}{2}verwrite all old configuration files with new " "ones".format(self.red, self.e...	[ "def", "choices", "(", "self", ")", ":", "print", "(", "\"\| {0}K{1}{2}eep the old and .new files, no changes\"", ".", "format", "(", "self", ".", "red", ",", "self", ".", "endc", ",", "self", ".", "br", ")", ")", "print", "(", "\"\| {0}O{1}{2}verwrite all old con...	41.035714	16.392857
def recv_match(self, condition=None, type=None, blocking=False): '''recv the next message that matches the given condition type can be a string or a list of strings''' if type is not None and not isinstance(type, list): type = [type] while True: m = self.recv_msg(...	[ "def", "recv_match", "(", "self", ",", "condition", "=", "None", ",", "type", "=", "None", ",", "blocking", "=", "False", ")", ":", "if", "type", "is", "not", "None", "and", "not", "isinstance", "(", "type", ",", "list", ")", ":", "type", "=", "[",...	40.571429	18.428571
def get_failing_line(xml_string, exc_msg): """ Extract the failing line from the XML string, as indicated by the line/column information in the exception message. Returns a tuple (lineno, colno, new_pos, line), where lineno and colno and marker_pos may be None. """ max_before = 500 # max c...	[ "def", "get_failing_line", "(", "xml_string", ",", "exc_msg", ")", ":", "max_before", "=", "500", "# max characters before reported position", "max_after", "=", "500", "# max characters after reported position", "max_unknown", "=", "1000", "# max characters when position cannot...	45.033333	16.233333
def _calc_CI( sampler, modelidx=0, confs=[3, 1], last_step=False, e_range=None, e_npoints=100, threads=None, ): """Calculate confidence interval. """ from scipy import stats # If we are computing the samples for the confidence intervals, we need at # least one sample to ...	[ "def", "_calc_CI", "(", "sampler", ",", "modelidx", "=", "0", ",", "confs", "=", "[", "3", ",", "1", "]", ",", "last_step", "=", "False", ",", "e_range", "=", "None", ",", "e_npoints", "=", "100", ",", "threads", "=", "None", ",", ")", ":", "from...	30.938462	19.307692
def rename(self, new_name): """ Rename an image """ return self.get_data( "images/%s" % self.id, type=PUT, params={"name": new_name} )	[ "def", "rename", "(", "self", ",", "new_name", ")", ":", "return", "self", ".", "get_data", "(", "\"images/%s\"", "%", "self", ".", "id", ",", "type", "=", "PUT", ",", "params", "=", "{", "\"name\"", ":", "new_name", "}", ")" ]	22.888889	10.666667
def create_client(storage_account, timeout, proxy): # type: (blobxfer.operations.azure.StorageAccount, # blobxfer.models.options.Timeout, # blobxfer.models.options.HttpProxy) -> FileService """Create file client :param blobxfer.operations.azure.StorageAccount storage_account: s...	[ "def", "create_client", "(", "storage_account", ",", "timeout", ",", "proxy", ")", ":", "# type: (blobxfer.operations.azure.StorageAccount,", "# blobxfer.models.options.Timeout,", "# blobxfer.models.options.HttpProxy) -> FileService", "if", "storage_account", ".", "is_s...	41	12.941176
def _pfp__set_value(self, new_val): """Set the value, potentially converting an unsigned value to a signed one (and visa versa)""" if self._pfp__frozen: raise errors.UnmodifiableConst() if isinstance(new_val, IntBase): # will automatically convert correctly betwe...	[ "def", "_pfp__set_value", "(", "self", ",", "new_val", ")", ":", "if", "self", ".", "_pfp__frozen", ":", "raise", "errors", ".", "UnmodifiableConst", "(", ")", "if", "isinstance", "(", "new_val", ",", "IntBase", ")", ":", "# will automatically convert correctly ...	31.023256	12.302326
def _read_buffer(self, data_in): """Process the socket buffer, and direct the data to the appropriate channel. :rtype: bytes """ while data_in: data_in, channel_id, frame_in = self._handle_amqp_frame(data_in) if frame_in is None: break ...	[ "def", "_read_buffer", "(", "self", ",", "data_in", ")", ":", "while", "data_in", ":", "data_in", ",", "channel_id", ",", "frame_in", "=", "self", ".", "_handle_amqp_frame", "(", "data_in", ")", "if", "frame_in", "is", "None", ":", "break", "self", ".", ...	29.368421	18.789474
def mktemp(self, container: Container) -> str: """ Generates a temporary file for a given container. Returns: the path to the temporary file inside the given container. """ r = self.__api.post('containers/{}/tempfile'.format(container.uid)) if r.status_code =...	[ "def", "mktemp", "(", "self", ",", "container", ":", "Container", ")", "->", "str", ":", "r", "=", "self", ".", "__api", ".", "post", "(", "'containers/{}/tempfile'", ".", "format", "(", "container", ".", "uid", ")", ")", "if", "r", ".", "status_code",...	35.636364	16.363636
def places_autocomplete_query(client, input_text, offset=None, location=None, radius=None, language=None): """ Returns Place predictions given a textual search query, such as "pizza near New York", and optional geographic bounds. :param input_text: The text query on which ...	[ "def", "places_autocomplete_query", "(", "client", ",", "input_text", ",", "offset", "=", "None", ",", "location", "=", "None", ",", "radius", "=", "None", ",", "language", "=", "None", ")", ":", "return", "_autocomplete", "(", "client", ",", "\"query\"", ...	40.25	24.75
def build_rdn(self): """ Build the Relative Distinguished Name for this entry. """ bits = [] for field in self._meta.fields: if field.db_column and field.primary_key: bits.append("%s=%s" % (field.db_column, getatt...	[ "def", "build_rdn", "(", "self", ")", ":", "bits", "=", "[", "]", "for", "field", "in", "self", ".", "_meta", ".", "fields", ":", "if", "field", ".", "db_column", "and", "field", ".", "primary_key", ":", "bits", ".", "append", "(", "\"%s=%s\"", "%", ...	37.666667	14.166667
def add_gene(self, gene): """Add the information of a gene This adds a gene dict to variant['genes'] Args: gene (dict): A gene dictionary """ logger.debug("Adding gene {0} to variant {1}".format( gene, self['variant_id'])) self['gene...	[ "def", "add_gene", "(", "self", ",", "gene", ")", ":", "logger", ".", "debug", "(", "\"Adding gene {0} to variant {1}\"", ".", "format", "(", "gene", ",", "self", "[", "'variant_id'", "]", ")", ")", "self", "[", "'genes'", "]", ".", "append", "(", "gene"...	27.083333	17.166667
def do_restart(self, line): """ Attempt to restart the bot. """ self.bot._frame = 0 self.bot._namespace.clear() self.bot._namespace.update(self.bot._initial_namespace)	[ "def", "do_restart", "(", "self", ",", "line", ")", ":", "self", ".", "bot", ".", "_frame", "=", "0", "self", ".", "bot", ".", "_namespace", ".", "clear", "(", ")", "self", ".", "bot", ".", "_namespace", ".", "update", "(", "self", ".", "bot", "....	29.857143	8.428571
def nulldata_script(data: bytes) -> NulldataScript: '''create nulldata (OP_return) script''' stack = StackData.from_bytes(data) return NulldataScript(stack)	[ "def", "nulldata_script", "(", "data", ":", "bytes", ")", "->", "NulldataScript", ":", "stack", "=", "StackData", ".", "from_bytes", "(", "data", ")", "return", "NulldataScript", "(", "stack", ")" ]	33	13
def simple_signatures(ambiguous_word: str, pos: str = None, lemma=True, stem=False, hyperhypo=True, stop=True, from_cache=True) -> dict: """ Returns a synsets_signatures dictionary that includes signature words of a sense from its: (i) definition (ii) example sentences (i...	[ "def", "simple_signatures", "(", "ambiguous_word", ":", "str", ",", "pos", ":", "str", "=", "None", ",", "lemma", "=", "True", ",", "stem", "=", "False", ",", "hyperhypo", "=", "True", ",", "stop", "=", "True", ",", "from_cache", "=", "True", ")", "-...	44.722222	21.166667
def parse_extras(self): # type: () -> None """ Parse extras from self.line and set them on the current object :returns: Nothing :rtype: None """ extras = None if "@" in self.line or self.is_vcs or self.is_url: line = "{0}".format(self.line) ...	[ "def", "parse_extras", "(", "self", ")", ":", "# type: () -> None", "extras", "=", "None", "if", "\"@\"", "in", "self", ".", "line", "or", "self", ".", "is_vcs", "or", "self", ".", "is_url", ":", "line", "=", "\"{0}\"", ".", "format", "(", "self", ".",...	37.666667	17.121212
def current(self, fields=None): """Returns dict of current values for all tracked fields""" if fields is None: deferred_fields = self.deferred_fields if deferred_fields: fields = [ field for field in self.fields if field not...	[ "def", "current", "(", "self", ",", "fields", "=", "None", ")", ":", "if", "fields", "is", "None", ":", "deferred_fields", "=", "self", ".", "deferred_fields", "if", "deferred_fields", ":", "fields", "=", "[", "field", "for", "field", "in", "self", ".", ...	35.923077	14.769231
def take_nd(self, indexer, axis=0, new_mgr_locs=None, fill_tuple=None): """ Take values according to indexer and return them as a block. """ if fill_tuple is None: fill_value = None else: fill_value = fill_tuple[0] # axis doesn't matter; we are re...	[ "def", "take_nd", "(", "self", ",", "indexer", ",", "axis", "=", "0", ",", "new_mgr_locs", "=", "None", ",", "fill_tuple", "=", "None", ")", ":", "if", "fill_tuple", "is", "None", ":", "fill_value", "=", "None", "else", ":", "fill_value", "=", "fill_tu...	38.136364	19.954545
def freeze(self, no_etag=False): """Call this method if you want to make your response object ready for pickeling. This buffers the generator if there is one. This also sets the etag unless `no_etag` is set to `True`. """ if not no_etag: self.add_etag() supe...	[ "def", "freeze", "(", "self", ",", "no_etag", "=", "False", ")", ":", "if", "not", "no_etag", ":", "self", ".", "add_etag", "(", ")", "super", "(", "ETagResponseMixin", ",", "self", ")", ".", "freeze", "(", ")" ]	43.5	11.875
def process_model(model): """Returns a BiopaxProcessor for a BioPAX model object. Parameters ---------- model : org.biopax.paxtools.model.Model A BioPAX model object. Returns ------- bp : BiopaxProcessor A BiopaxProcessor containing the obtained BioPAX model in bp.model. ...	[ "def", "process_model", "(", "model", ")", ":", "bp", "=", "BiopaxProcessor", "(", "model", ")", "bp", ".", "get_modifications", "(", ")", "bp", ".", "get_regulate_activities", "(", ")", "bp", ".", "get_regulate_amounts", "(", ")", "bp", ".", "get_activity_m...	24.708333	17.875
def pillar_refresh(self, force_refresh=False, notify=False): ''' Refresh the pillar ''' if self.connected: log.debug('Refreshing pillar. Notify: %s', notify) async_pillar = salt.pillar.get_async_pillar( self.opts, self.opts['grains'...	[ "def", "pillar_refresh", "(", "self", ",", "force_refresh", "=", "False", ",", "notify", "=", "False", ")", ":", "if", "self", ".", "connected", ":", "log", ".", "debug", "(", "'Refreshing pillar. Notify: %s'", ",", "notify", ")", "async_pillar", "=", "salt"...	42.37037	19.111111
async def oauth2_request( self, url: str, access_token: str = None, post_args: Dict[str, Any] = None, **args: Any ) -> Any: """Fetches the given URL auth an OAuth2 access token. If the request is a POST, ``post_args`` should be provided. Query string ...	[ "async", "def", "oauth2_request", "(", "self", ",", "url", ":", "str", ",", "access_token", ":", "str", "=", "None", ",", "post_args", ":", "Dict", "[", "str", ",", "Any", "]", "=", "None", ",", "", "", "args", ":", "Any", ")", "->", "Any", ":"...	33.363636	21.036364
def choropleth(self, args, *kwargs): """Call the Choropleth class with the same arguments. This method may be deleted after a year from now (Nov 2018). """ warnings.warn( 'The choropleth method has been deprecated. Instead use the new ' 'Choropleth class, whic...	[ "def", "choropleth", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "warnings", ".", "warn", "(", "'The choropleth method has been deprecated. Instead use the new '", "'Choropleth class, which has the same arguments. See the example '", "'notebook \\'GeoJSON...	42.846154	19.769231
def basis(start, stop=None, dim=1, sort="G", cross_truncation=1.): """ Create an N-dimensional unit polynomial basis. Args: start (int, numpy.ndarray): the minimum polynomial to include. If int is provided, set as lowest total order. If array of int, set as lower order alon...	[ "def", "basis", "(", "start", ",", "stop", "=", "None", ",", "dim", "=", "1", ",", "sort", "=", "\"G\"", ",", "cross_truncation", "=", "1.", ")", ":", "if", "stop", "is", "None", ":", "start", ",", "stop", "=", "numpy", ".", "array", "(", "0", ...	32.216867	18.698795
def order_target_value(id_or_ins, cash_amount, price=None, style=None): """ 买入/卖出并且自动调整该证券的仓位到一个目标价值。加仓时，cash_amount 代表现有持仓的价值加上即将花费（包含税费）的现金的总价值。减仓时，cash_amount 代表调整仓位的目标价至。需要注意，如果资金不足，该API将不会创建发送订单。 :param id_or_ins: 下单标的物 :type id_or_ins: :class:`~Instrument` object \| `str` \| List[:c...	[ "def", "order_target_value", "(", "id_or_ins", ",", "cash_amount", ",", "price", "=", "None", ",", "style", "=", "None", ")", ":", "order_book_id", "=", "assure_stock_order_book_id", "(", "id_or_ins", ")", "account", "=", "Environment", ".", "get_instance", "(",...	33.232558	25.744186
def stage_subset(self, files_to_add: str): """ Stages a subset of files :param files_to_add: files to stage :type files_to_add: str """ LOGGER.info('staging files: %s', files_to_add) self.repo.git.add(files_to_add, A=True)	[ "def", "stage_subset", "(", "self", ",", "", "files_to_add", ":", "str", ")", ":", "LOGGER", ".", "info", "(", "'staging files: %s'", ",", "files_to_add", ")", "self", ".", "repo", ".", "git", ".", "add", "(", "", "files_to_add", ",", "A", "=", "True...	30.333333	9.444444
def remove_handler(self, handler: Handler, group: int = 0): """Removes a previously-added update handler. Make sure to provide the right group that the handler was added in. You can use the return value of the :meth:`add_handler` method, a tuple of (handler, group), and pass it directly...	[ "def", "remove_handler", "(", "self", ",", "handler", ":", "Handler", ",", "group", ":", "int", "=", "0", ")", ":", "if", "isinstance", "(", "handler", ",", "DisconnectHandler", ")", ":", "self", ".", "disconnect_handler", "=", "None", "else", ":", "self...	37.277778	19.833333
def set_topological_dag_upstreams(dag, ops, op_runs, runs_by_ops): """Set the upstream runs for the operation runs in the dag following the topological sort.""" sorted_ops = dags.sort_topologically(dag=dag) for op_id in sorted_ops: op_run_id = runs_by_ops[op_id] op_run = op_runs[op_run_id] ...	[ "def", "set_topological_dag_upstreams", "(", "dag", ",", "ops", ",", "op_runs", ",", "runs_by_ops", ")", ":", "sorted_ops", "=", "dags", ".", "sort_topologically", "(", "dag", "=", "dag", ")", "for", "op_id", "in", "sorted_ops", ":", "op_run_id", "=", "runs_...	52.428571	9.714286
def uealite( word, max_word_length=20, max_acro_length=8, return_rule_no=False, var='standard', ): """Return UEA-Lite stem. This is a wrapper for :py:meth:`UEALite.stem`. Parameters ---------- word : str The word to stem max_word_length : int The maximum wor...	[ "def", "uealite", "(", "word", ",", "max_word_length", "=", "20", ",", "max_acro_length", "=", "8", ",", "return_rule_no", "=", "False", ",", "var", "=", "'standard'", ",", ")", ":", "return", "UEALite", "(", ")", ".", "stem", "(", "word", ",", "max_wo...	20.102041	22.122449
def renew_local_branch(branch, start_point, remote=False): """Make a new local branch from that start_point start_point is a git "commit-ish", e.g branch, tag, commit If a local branch already exists it is removed If remote is true then push the new branch to origin """ if branch in branches()...	[ "def", "renew_local_branch", "(", "branch", ",", "start_point", ",", "remote", "=", "False", ")", ":", "if", "branch", "in", "branches", "(", ")", ":", "checkout", "(", "start_point", ")", "delete", "(", "branch", ",", "force", "=", "True", ",", "remote"...	33	16.933333
def build_mock_repository(conn_, file_path_list, verbose): """ Build the mock repository from the file_path list and fake connection instance. This allows both mof files and python files to be used to build the repository. If verbose is True, it displays the respository after it is build as mo...	[ "def", "build_mock_repository", "(", "conn_", ",", "file_path_list", ",", "verbose", ")", ":", "for", "file_path", "in", "file_path_list", ":", "ext", "=", "_os", ".", "path", ".", "splitext", "(", "file_path", ")", "[", "1", "]", "if", "not", "_os", "."...	41.410256	20.230769
def iter_modules(path=None, prefix=''): """Yields (module_loader, name, ispkg) for all submodules on path, or, if path is None, all top-level modules on sys.path. 'path' should be either None or a list of paths to look for modules in. 'prefix' is a string to output on the front of every module nam...	[ "def", "iter_modules", "(", "path", "=", "None", ",", "prefix", "=", "''", ")", ":", "if", "path", "is", "None", ":", "importers", "=", "iter_importers", "(", ")", "else", ":", "importers", "=", "map", "(", "get_importer", ",", "path", ")", "yielded", ...	29.363636	18.954545
def workers(): """Show information on salactus workers. (slow)""" counter = Counter() for w in Worker.all(connection=worker.connection): for q in w.queues: counter[q.name] += 1 import pprint pprint.pprint(dict(counter))	[ "def", "workers", "(", ")", ":", "counter", "=", "Counter", "(", ")", "for", "w", "in", "Worker", ".", "all", "(", "connection", "=", "worker", ".", "connection", ")", ":", "for", "q", "in", "w", ".", "queues", ":", "counter", "[", "q", ".", "nam...	31.5	13.75
def informed_consent(self): """Create a URL for the user to give their consent through""" if self.typeable_handle is None: consent_url = [self.config['server']['server_url'], "/get_initial_consent?username="] consent_url.append(urlsafe_b64encode(self.us...	[ "def", "informed_consent", "(", "self", ")", ":", "if", "self", ".", "typeable_handle", "is", "None", ":", "consent_url", "=", "[", "self", ".", "config", "[", "'server'", "]", "[", "'server_url'", "]", ",", "\"/get_initial_consent?username=\"", "]", "consent_...	45.9375	16
def send_buffered_messages(self): """Send messages in out_stream to the Stream Manager""" while not self.out_stream.is_empty() and self._stmgr_client.is_registered: tuple_set = self.out_stream.poll() if isinstance(tuple_set, tuple_pb2.HeronTupleSet): tuple_set.src_task_id = self.my_pplan_hel...	[ "def", "send_buffered_messages", "(", "self", ")", ":", "while", "not", "self", ".", "out_stream", ".", "is_empty", "(", ")", "and", "self", ".", "_stmgr_client", ".", "is_registered", ":", "tuple_set", "=", "self", ".", "out_stream", ".", "poll", "(", ")"...	55.75	15.125
def set_column_prop(self, prop, values, repeat="up"): """ Specify the properties of the columns :param values: :param repeat: if 'up' then duplicate up the structure :return: """ values = np.array(values) if repeat == "up": assert len(values.s...	[ "def", "set_column_prop", "(", "self", ",", "prop", ",", "values", ",", "repeat", "=", "\"up\"", ")", ":", "values", "=", "np", ".", "array", "(", "values", ")", "if", "repeat", "==", "\"up\"", ":", "assert", "len", "(", "values", ".", "shape", ")", ...	37.631579	14.368421
def create(cls, user, **kwargs): """If parent resource is not an editable state, should not be able to create.""" parent_id = kwargs.get(cls.parent_resource.resource_type + '_id') try: parent = yield cls.parent_resource.get(parent_id) except couch.NotFound: msg = ...	[ "def", "create", "(", "cls", ",", "user", ",", "", "", "kwargs", ")", ":", "parent_id", "=", "kwargs", ".", "get", "(", "cls", ".", "parent_resource", ".", "resource_type", "+", "'_id'", ")", "try", ":", "parent", "=", "yield", "cls", ".", "parent_...	40.526316	19.684211
def lint(context): """Looks for errors in source code of your blog""" config = context.obj try: run('flake8 {dir} --exclude={exclude}'.format( dir=config['CWD'], exclude=','.join(EXCLUDE), )) except SubprocessError: context.exit(1)	[ "def", "lint", "(", "context", ")", ":", "config", "=", "context", ".", "obj", "try", ":", "run", "(", "'flake8 {dir} --exclude={exclude}'", ".", "format", "(", "dir", "=", "config", "[", "'CWD'", "]", ",", "exclude", "=", "','", ".", "join", "(", "EXC...	26	17.818182
def set_metric_by_day(self, unique_identifier, metric, date, count, sync_agg=True, update_counter=True): """ Sets the count for the ``metric`` for ``unique_identifier``. You must specify a ``date`` for the ``count`` to be set on. Useful for resetting a metric count to 0 or decrementing a metric....	[ "def", "set_metric_by_day", "(", "self", ",", "unique_identifier", ",", "metric", ",", "date", ",", "count", ",", "sync_agg", "=", "True", ",", "update_counter", "=", "True", ")", ":", "metric", "=", "[", "metric", "]", "if", "isinstance", "(", "metric", ...	60.611111	41
def xception_exit(inputs): """Xception exit flow.""" with tf.variable_scope("xception_exit"): x = inputs x_shape = x.get_shape().as_list() if x_shape[1] is None or x_shape[2] is None: length_float = tf.to_float(tf.shape(x)[1]) length_float *= tf.to_float(tf.shape(x)[2]) spatial_dim_flo...	[ "def", "xception_exit", "(", "inputs", ")", ":", "with", "tf", ".", "variable_scope", "(", "\"xception_exit\"", ")", ":", "x", "=", "inputs", "x_shape", "=", "x", ".", "get_shape", "(", ")", ".", "as_list", "(", ")", "if", "x_shape", "[", "1", "]", "...	43.952381	15.904762
def __prepare_usertexts(self): """Replace user-type text fields that start with "py3o." with genshi instructions. """ field_expr = "//text:user-field-get[starts-with(@text:name, 'py3o.')]" for content_tree in self.content_trees: for userfield in content_tree.xpath(...	[ "def", "__prepare_usertexts", "(", "self", ")", ":", "field_expr", "=", "\"//text:user-field-get[starts-with(@text:name, 'py3o.')]\"", "for", "content_tree", "in", "self", ".", "content_trees", ":", "for", "userfield", "in", "content_tree", ".", "xpath", "(", "field_exp...	36.814815	19.864198
def logarithmic_interpolation_extrapolation(df, target_height): r""" Logarithmic inter- or extrapolates between the values of a data frame. This function can be used for the inter-/extrapolation of the wind speed if it is available at two or more different heights, to approximate the value at hub h...	[ "def", "logarithmic_interpolation_extrapolation", "(", "df", ",", "target_height", ")", ":", "# find closest heights", "heights_sorted", "=", "df", ".", "columns", "[", "sorted", "(", "range", "(", "len", "(", "df", ".", "columns", ")", ")", ",", "key", "=", ...	39.867925	26.566038
def nextSolarEclipse(date): """ Returns the Datetime of the maximum phase of the next global solar eclipse. """ eclipse = swe.solarEclipseGlobal(date.jd, backward=False) return Datetime.fromJD(eclipse['maximum'], date.utcoffset)	[ "def", "nextSolarEclipse", "(", "date", ")", ":", "eclipse", "=", "swe", ".", "solarEclipseGlobal", "(", "date", ".", "jd", ",", "backward", "=", "False", ")", "return", "Datetime", ".", "fromJD", "(", "eclipse", "[", "'maximum'", "]", ",", "date", ".", ...	30.375	18.25
def get_environment(self): """Return environment details.""" environment = junos_views.junos_environment_table(self.device) routing_engine = junos_views.junos_routing_engine_table(self.device) temperature_thresholds = junos_views.junos_temperature_thresholds(self.device) power_su...	[ "def", "get_environment", "(", "self", ")", ":", "environment", "=", "junos_views", ".", "junos_environment_table", "(", "self", ".", "device", ")", "routing_engine", "=", "junos_views", ".", "junos_routing_engine_table", "(", "self", ".", "device", ")", "temperat...	48.797619	23.220238
def metric_data( self, id, names, values=None, from_dt=None, to_dt=None, summarize=False): """ This API endpoint returns a list of values for each of the requested metrics. The list of available metrics can be returned using the Metric Name API endpoint. ...	[ "def", "metric_data", "(", "self", ",", "id", ",", "names", ",", "values", "=", "None", ",", "from_dt", "=", "None", ",", "to_dt", "=", "None", ",", "summarize", "=", "False", ")", ":", "params", "=", "[", "'from={0}'", ".", "format", "(", "from_dt",...	32.052632	21.236842
def render_constants(): """render generated constant files from templates""" generate_file("constant_enums.pxi", cython_enums, pjoin(root, 'zmq', 'backend', 'cython')) generate_file("constants.pxi", constants_pyx, pjoin(root, 'zmq', 'backend', 'cython')) generate_file("zmq_constants.h", ifndefs, pjoin(r...	[ "def", "render_constants", "(", ")", ":", "generate_file", "(", "\"constant_enums.pxi\"", ",", "cython_enums", ",", "pjoin", "(", "root", ",", "'zmq'", ",", "'backend'", ",", "'cython'", ")", ")", "generate_file", "(", "\"constants.pxi\"", ",", "constants_pyx", ...	67.4	31
def plot_labels(labels, lattice=None, coords_are_cartesian=False, ax=None, **kwargs): """ Adds labels to a matplotlib Axes Args: labels: dict containing the label as a key and the coordinates as value. lattice: Lattice object used to convert from reciprocal to cartesian coor...	[ "def", "plot_labels", "(", "labels", ",", "lattice", "=", "None", ",", "coords_are_cartesian", "=", "False", ",", "ax", "=", "None", ",", "", "", "kwargs", ")", ":", "ax", ",", "fig", ",", "plt", "=", "get_ax3d_fig_plt", "(", "ax", ")", "if", "\"co...	34.825	20.075
def row(self): """Returns current data row: MyDBRow object, or None""" ret = None i = self.tableWidget.currentRow() if i >= 0: ret = self._data[i] return ret	[ "def", "row", "(", "self", ")", ":", "ret", "=", "None", "i", "=", "self", ".", "tableWidget", ".", "currentRow", "(", ")", "if", "i", ">=", "0", ":", "ret", "=", "self", ".", "_data", "[", "i", "]", "return", "ret" ]	29.857143	14.142857
def _from_dict(cls, _dict): """Initialize a Collection object from a json dictionary.""" args = {} if 'collection_id' in _dict: args['collection_id'] = _dict.get('collection_id') if 'name' in _dict: args['name'] = _dict.get('name') if 'description' in _dic...	[ "def", "_from_dict", "(", "cls", ",", "_dict", ")", ":", "args", "=", "{", "}", "if", "'collection_id'", "in", "_dict", ":", "args", "[", "'collection_id'", "]", "=", "_dict", ".", "get", "(", "'collection_id'", ")", "if", "'name'", "in", "_dict", ":",...	44.78125	12.03125
def close_debt_position(self, symbol, account=None): """ Close a debt position and reclaim the collateral :param str symbol: Symbol to close debt position for :raises ValueError: if symbol has no open call position """ if not account: if "default_account" in ...	[ "def", "close_debt_position", "(", "self", ",", "symbol", ",", "account", "=", "None", ")", ":", "if", "not", "account", ":", "if", "\"default_account\"", "in", "self", ".", "blockchain", ".", "config", ":", "account", "=", "self", ".", "blockchain", ".", ...	43.305556	18.444444
def list(self, **params): """ Retrieve all lead unqualified reasons Returns all lead unqualified reasons available to the user according to the parameters provided :calls: ``get /lead_unqualified_reasons`` :param dict params: (optional) Search options. :return: List of ...	[ "def", "list", "(", "self", ",", "", "", "params", ")", ":", "_", ",", "_", ",", "lead_unqualified_reasons", "=", "self", ".", "http_client", ".", "get", "(", "\"/lead_unqualified_reasons\"", ",", "params", "=", "params", ")", "return", "lead_unqualified_r...	42.142857	28.571429
def terminate(self, *, force: bool=False, timeout: float=30.0, step: float=1.0) -> None: '''Stop all scheduled and/or executing tasks, first by asking nicely, and then by waiting up to `timeout` seconds before forcefully stopping the asyncio event loop.''' if isinstanc...	[ "def", "terminate", "(", "self", ",", "*", ",", "force", ":", "bool", "=", "False", ",", "timeout", ":", "float", "=", "30.0", ",", "step", ":", "float", "=", "1.0", ")", "->", "None", ":", "if", "isinstance", "(", "self", ".", "monitor", ",", "a...	40.470588	21.764706
def _print(self, ms, style="TIP"): """ abstraction for managing color printing """ styles1 = {'IMPORTANT': Style.BRIGHT, 'TIP': Style.DIM, 'URI': Style.BRIGHT, 'TEXT': Fore.GREEN, 'MAGENTA': Fore.MAGENTA, 'BLU...	[ "def", "_print", "(", "self", ",", "ms", ",", "style", "=", "\"TIP\"", ")", ":", "styles1", "=", "{", "'IMPORTANT'", ":", "Style", ".", "BRIGHT", ",", "'TIP'", ":", "Style", ".", "DIM", ",", "'URI'", ":", "Style", ".", "BRIGHT", ",", "'TEXT'", ":",...	37.75	8.6875
def get_array_for_fit(observables: dict, track_pt_bin: int, jet_pt_bin: int) -> histogram.Histogram1D: """ Get a Histogram1D associated with the selected jet and track pt bins. This is often used to retrieve data for fitting. Args: observables (dict): The observables from which the hist should be ...	[ "def", "get_array_for_fit", "(", "observables", ":", "dict", ",", "track_pt_bin", ":", "int", ",", "jet_pt_bin", ":", "int", ")", "->", "histogram", ".", "Histogram1D", ":", "for", "name", ",", "observable", "in", "observables", ".", "items", "(", ")", ":"...	47.736842	29.421053
def pop_all(self): """Preserve the context stack by transferring it to a new instance.""" new_stack = type(self)() new_stack._exit_callbacks = self._exit_callbacks self._exit_callbacks = deque() return new_stack	[ "def", "pop_all", "(", "self", ")", ":", "new_stack", "=", "type", "(", "self", ")", "(", ")", "new_stack", ".", "_exit_callbacks", "=", "self", ".", "_exit_callbacks", "self", ".", "_exit_callbacks", "=", "deque", "(", ")", "return", "new_stack" ]	41	10.666667
def inatoms(self, reverse=False): """Yield the singleton for every non-member.""" if reverse: return filterfalse(self.__and__, reversed(self._atoms)) return filterfalse(self.__and__, self._atoms)	[ "def", "inatoms", "(", "self", ",", "reverse", "=", "False", ")", ":", "if", "reverse", ":", "return", "filterfalse", "(", "self", ".", "__and__", ",", "reversed", "(", "self", ".", "_atoms", ")", ")", "return", "filterfalse", "(", "self", ".", "__and_...	45.4	13.6
def value(self): """Returns the value of this Slot.""" if hasattr(self, '_value_decoded'): return self._value_decoded if self.value_blob is not None: encoded_value = self.value_blob.open().read() else: encoded_value = self.value_text self._value_decoded = json.loads(encoded_value...	[ "def", "value", "(", "self", ")", ":", "if", "hasattr", "(", "self", ",", "'_value_decoded'", ")", ":", "return", "self", ".", "_value_decoded", "if", "self", ".", "value_blob", "is", "not", "None", ":", "encoded_value", "=", "self", ".", "value_blob", "...	30.25	17.166667
def mean_se(series, mult=1): """ Calculate mean and standard errors on either side """ m = np.mean(series) se = mult * np.sqrt(np.var(series) / len(series)) return pd.DataFrame({'y': [m], 'ymin': m-se, 'ymax': m+se})	[ "def", "mean_se", "(", "series", ",", "mult", "=", "1", ")", ":", "m", "=", "np", ".", "mean", "(", "series", ")", "se", "=", "mult", "*", "np", ".", "sqrt", "(", "np", ".", "var", "(", "series", ")", "/", "len", "(", "series", ")", ")", "r...	31.333333	7.111111
def do_attribute_query(self, entityid, subject_id, attribute=None, sp_name_qualifier=None, name_qualifier=None, nameid_format=None, real_id=None, consent=None, extensions=None, sign=False, binding=BINDING_SOAP, n...	[ "def", "do_attribute_query", "(", "self", ",", "entityid", ",", "subject_id", ",", "attribute", "=", "None", ",", "sp_name_qualifier", "=", "None", ",", "name_qualifier", "=", "None", ",", "nameid_format", "=", "None", ",", "real_id", "=", "None", ",", "cons...	49.447761	22.044776
def run(bam_file, data, out_dir): """Create several log files""" m = {"base": None, "secondary": []} m.update(_mirbase_stats(data, out_dir)) m["secondary"].append(_seqcluster_stats(data, out_dir))	[ "def", "run", "(", "bam_file", ",", "data", ",", "out_dir", ")", ":", "m", "=", "{", "\"base\"", ":", "None", ",", "\"secondary\"", ":", "[", "]", "}", "m", ".", "update", "(", "_mirbase_stats", "(", "data", ",", "out_dir", ")", ")", "m", "[", "\...	41.6	6
def _design_poll(self, name, mode, oldres, timeout=5, use_devmode=False): """ Poll for an 'async' action to be complete. :param string name: The name of the design document :param string mode: One of ``add`` or ``del`` to indicate whether we should check for addition or delet...	[ "def", "_design_poll", "(", "self", ",", "name", ",", "mode", ",", "oldres", ",", "timeout", "=", "5", ",", "use_devmode", "=", "False", ")", ":", "if", "not", "timeout", ":", "return", "True", "if", "timeout", "<", "0", ":", "raise", "ArgumentError", ...	34.5	19.934783
def account_xdr_object(self): """Create PublicKey XDR object via public key bytes. :return: Serialized XDR of PublicKey type. """ return Xdr.types.PublicKey(Xdr.const.KEY_TYPE_ED25519, self.verifying_key.to_bytes())	[ "def", "account_xdr_object", "(", "self", ")", ":", "return", "Xdr", ".", "types", ".", "PublicKey", "(", "Xdr", ".", "const", ".", "KEY_TYPE_ED25519", ",", "self", ".", "verifying_key", ".", "to_bytes", "(", ")", ")" ]	39.571429	15.428571
def obfuscate_unique(tokens, index, replace, replacement, args): """ If the token string (a unique value anywhere) inside tokens[index]* matches replace, return replacement. .. note:: This function is only for replacing absolutely unique ocurrences of replace (where we don't ha...	[ "def", "obfuscate_unique", "(", "tokens", ",", "index", ",", "replace", ",", "replacement", ",", "*", "args", ")", ":", "def", "return_replacement", "(", "replacement", ")", ":", "UNIQUE_REPLACEMENTS", "[", "replacement", "]", "=", "replace", "return", "replac...	34.45	16.45
def ex_call(func, args): """A function-call expression with only positional parameters. The function may be an expression or the name of a function. Each argument may be an expression or a value to be used as a literal. """ if isinstance(func, str): func = ex_rvalue(func) args = list(ar...	[ "def", "ex_call", "(", "func", ",", "args", ")", ":", "if", "isinstance", "(", "func", ",", "str", ")", ":", "func", "=", "ex_rvalue", "(", "func", ")", "args", "=", "list", "(", "args", ")", "for", "i", "in", "range", "(", "len", "(", "args", ...	33.352941	14.823529
def check_match(self, name): """ Check if a release version matches any of the specificed patterns. Parameters ========== name: str Release name Returns ======= bool: True if it matches, False otherwise. """ return...	[ "def", "check_match", "(", "self", ",", "name", ")", ":", "return", "any", "(", "pattern", ".", "match", "(", "name", ")", "for", "pattern", "in", "self", ".", "patterns", ")" ]	24	21.466667
async def get_self_info(self, get_self_info_request): """Return info about the current user.""" response = hangouts_pb2.GetSelfInfoResponse() await self._pb_request('contacts/getselfinfo', get_self_info_request, response) return response	[ "async", "def", "get_self_info", "(", "self", ",", "get_self_info_request", ")", ":", "response", "=", "hangouts_pb2", ".", "GetSelfInfoResponse", "(", ")", "await", "self", ".", "_pb_request", "(", "'contacts/getselfinfo'", ",", "get_self_info_request", ",", "respo...	49.166667	13.333333
def _find_free_location(self, free_locations, required_sectors=1, preferred=None): """ Given a list of booleans, find a list of <required_sectors> consecutive True values. If no such list is found, return length(free_locations). Assumes first two values are always False. """ ...	[ "def", "_find_free_location", "(", "self", ",", "free_locations", ",", "required_sectors", "=", "1", ",", "preferred", "=", "None", ")", ":", "# check preferred (current) location", "if", "preferred", "and", "all", "(", "free_locations", "[", "preferred", ":", "pr...	45.863636	22.318182
def cleanup_subprocesses(): """On python exit: find possibly running subprocesses and kill them.""" # pylint: disable=redefined-outer-name, reimported # atexit functions tends to loose global imports sometimes so reimport # everything what is needed again here: import os import errno from mi...	[ "def", "cleanup_subprocesses", "(", ")", ":", "# pylint: disable=redefined-outer-name, reimported", "# atexit functions tends to loose global imports sometimes so reimport", "# everything what is needed again here:", "import", "os", "import", "errno", "from", "mirakuru", ".", "base_env...	38.470588	16.411765
def rundata(self, strjson): """POST JSON data object to server""" d = json.loads(strjson) return self.api.data.post(d)	[ "def", "rundata", "(", "self", ",", "strjson", ")", ":", "d", "=", "json", ".", "loads", "(", "strjson", ")", "return", "self", ".", "api", ".", "data", ".", "post", "(", "d", ")" ]	27.8	13.2
def parse_version_output(out): """ Parses the output of 'docker version --format="{{json .}}"'. Essentially just returns the parsed JSON string, like the Docker API does. Fields are slightly different however. :param out: CLI output. :type out: unicode \| str :return: Parsed result. :rtype: ...	[ "def", "parse_version_output", "(", "out", ")", ":", "parsed", "=", "json", ".", "loads", "(", "out", ",", "encoding", "=", "'utf-8'", ")", "if", "parsed", ":", "return", "parsed", ".", "get", "(", "'Client'", ",", "{", "}", ")", "return", "{", "}" ]	31.071429	19.5
def is_one_edit(s, t): """ :type s: str :type t: str :rtype: bool """ if len(s) > len(t): return is_one_edit(t, s) if len(t) - len(s) > 1 or t == s: return False for i in range(len(s)): if s[i] != t[i]: return s[i+1:] == t[i+1:] or s[i:] == t[i+1:] ...	[ "def", "is_one_edit", "(", "s", ",", "t", ")", ":", "if", "len", "(", "s", ")", ">", "len", "(", "t", ")", ":", "return", "is_one_edit", "(", "t", ",", "s", ")", "if", "len", "(", "t", ")", "-", "len", "(", "s", ")", ">", "1", "or", "t", ...	22.785714	14.928571
def availability_sets_list_available_sizes(name, resource_group, **kwargs): # pylint: disable=invalid-name ''' .. versionadded:: 2019.2.0 List all available virtual machine sizes that can be used to to create a new virtual machine in an existing availability set. :param name: The availability set...	[ "def", "availability_sets_list_available_sizes", "(", "name", ",", "resource_group", ",", "", "", "kwargs", ")", ":", "# pylint: disable=invalid-name", "result", "=", "{", "}", "compconn", "=", "__utils__", "[", "'azurearm.get_client'", "]", "(", "'compute'", ",",...	31.486486	26.567568
def get_obj_class(self, obj_type): """ Returns the object class based on parent and object types. In most cases the object class can be derived from object type alone but sometimes the same object type name is used for different object types so the parent (or even grandparent) type is r...	[ "def", "get_obj_class", "(", "self", ",", "obj_type", ")", ":", "if", "obj_type", "in", "IxnObject", ".", "str_2_class", ":", "if", "type", "(", "IxnObject", ".", "str_2_class", "[", "obj_type", "]", ")", "is", "dict", ":", "if", "self", ".", "obj_type",...	54.045455	29

def inner_join_impl(other, sequence): """ Implementation for part of join_impl :param other: other sequence to join with :param sequence: first sequence to join with :return: joined sequence """ seq_dict = {} for element in sequence: seq_dict[element[0]] = element[1] seq_kv =...

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31.944444

10.944444

def remove_citation_metadata(graph): """Remove the metadata associated with a citation. Best practice is to add this information programmatically. """ for u, v, k in graph.edges(keys=True): if CITATION not in graph[u][v][k]: continue for key in list(graph[u][v][k][CITATION])...

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37.090909

10.454545

def get_as_string(self, s3_path, encoding='utf-8'): """ Get the contents of an object stored in S3 as string. :param s3_path: URL for target S3 location :param encoding: Encoding to decode bytes to string :return: File contents as a string """ content = self.get_...

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36.8

10.8

def svd_entropy(X, Tau, DE, W=None): """Compute SVD Entropy from either two cases below: 1. a time series X, with lag tau and embedding dimension dE (default) 2. a list, W, of normalized singular values of a matrix (if W is provided, recommend to speed up.) If W is None, the function will do as fol...

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33.787879

22.818182

def biopax_process_pc_neighborhood(): """Process PathwayCommons neighborhood, return INDRA Statements.""" if request.method == 'OPTIONS': return {} response = request.body.read().decode('utf-8') body = json.loads(response) genes = body.get('genes') bp = biopax.process_pc_neighborhood(gen...

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38.555556

8.444444

def dump_requestdriver_cookies_into_webdriver(requestdriver, webdriverwrapper, handle_sub_domain=True): """Adds all cookies in the RequestDriver session to Webdriver @type requestdriver: RequestDriver @param requestdriver: RequestDriver with cookies @type webdriverwrapper: WebDriverWrapper @param w...

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44.634146

21.219512

def generate_scan_parameter_description(scan_parameters): '''Generate scan parameter dictionary. This is the only way to dynamically create table with dictionary, cannot be done with tables.IsDescription Parameters ---------- scan_parameters : list, tuple List of scan parameters names (strings)...

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39.157895

38.105263

def compare_version(a, b): # Ignore PyDocStyleBear """Compare two version strings. :param a: str :param b: str :return: -1 / 0 / 1 """ def _range(q): """Convert a version string to array of integers. "1.2.3" -> [1, 2, 3] :param q: str :return: List[int] ...

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24.327273

17.836364

def address_to_coords(self, address): """Convert address to coordinates""" base_coords = self.BASE_COORDS[self.region] get_cord = self.COORD_SERVERS[self.region] url_options = { "q": address, "lang": "eng", "origin": "livemap", "lat": base...

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47.038462

22.5

def get_trips( feed: "Feed", date: Optional[str] = None, time: Optional[str] = None ) -> DataFrame: """ Return a subset of ``feed.trips``. Parameters ---------- feed : Feed date : string YYYYMMDD date string time : string HH:MM:SS time string, possibly with HH > 23 ...

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26.528302

20.264151

def by_tag_id(self,tag_id): '''Return all the semantic tag related to the given tag id :returns: a semantic tag or None :rtype: list of ckan.model.semantictag.SemanticTag object ''' query = meta.Session.query(TagSemanticTag).filter(TagSemanticTag.tag_id==tag_id) return query.first()

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32.111111

25.888889

def load_plugins(self, plugin_dirs=None, quiet=True): """ Load plugins in `sys.path` and :attr:`plugin_dirs` Parameters ---------- plugin_dirs : list or tuple of string, optional A list or tuple of plugin directory path quiet : bool, optional If T...

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35.707317

17.365854

def run_until_shutdown(self): ''' Run the Bokeh Server until shutdown is requested by the user, either via a Keyboard interrupt (Ctrl-C) or SIGTERM. Calling this method will start the Tornado ``IOLoop`` and block all execution in the calling process. Returns: None ...

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30.380952

20.095238

def max_placeable_height_on_deck(self, placeable): """ :param placeable: :return: Calibrated height of container in mm from deck as the reference point """ offset = placeable.top()[1] placeable_coordinate = add( pose_tracker.absolute( s...

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33.625

13.625

def _hammer_function_precompute(self,x0, L, Min, model): """ Pre-computes the parameters of a penalizer centered at x0. """ if x0 is None: return None, None if len(x0.shape)==1: x0 = x0[None,:] m = model.predict(x0)[0] pred = model.predict(x0)[1].copy() pr...

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32.266667

10.266667

def _is_range_request_processable(self, environ): """Return ``True`` if `Range` header is present and if underlying resource is considered unchanged when compared with `If-Range` header. """ return ( "HTTP_IF_RANGE" not in environ or not is_resource_modified( ...

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38.071429

10.785714

def tags_getListUserPopular(user_id='', count=''): """Gets the popular tags for a user in dictionary form tag=>count""" method = 'flickr.tags.getListUserPopular' auth = user_id == '' data = _doget(method, auth=auth, user_id=user_id) result = {} if isinstance(data.rsp.tags.tag, list): for...

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39.083333

12.75

def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'name') and self.name is not None: _dict['name'] = self.name if hasattr(self, 'role') and self.role is not None: _dict['role'] = self.role return _dict

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39

13.375

def parse_xml_report(cls, conf, path): """Parse the ivy xml report corresponding to the name passed to ivy. :API: public :param string conf: the ivy conf name (e.g. "default") :param string path: The path to the ivy report file. :returns: The info in the xml report. :rtype: :class:`IvyInfo` ...

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39.3

19.525

def metadataContributer(self): """gets the metadata featurelayer object""" if self._metaFL is None: fl = FeatureService(url=self._metadataURL, proxy_url=self._proxy_url, proxy_port=self._proxy_port) self._metaFS = fl ...

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42.125

11.25

def purge_items(app, env, docname): """ Clean, if existing, ``item`` entries in ``traceability_all_items`` environment variable, for all the source docs being purged. This function should be triggered upon ``env-purge-doc`` event. """ keys = list(env.traceability_all_items.keys()) for key ...

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35.916667

18.916667

def get_tag_value(x, key): """Get a value from tag""" if x is None: return '' result = [y['Value'] for y in x if y['Key'] == key] if result: return result[0] return ''

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24.5

18

def get_schedules_for_season(self, season, season_type="REG"): """ Game schedule for a specified season. """ try: season = int(season) if season_type not in ["REG", "PRE", "POST"]: raise ValueError except (ValueError, TypeError): ...

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38.357143

17.357143

def load_grid_data(file_list, data_type="binary", sort=True, delim=" "): """ Loads data from one or multiple grid_task files. Arguments: file_list - either a string or a list of strings indicating files to load data from. Files are assumed to be in grid_task.dat ...

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38.183333

20.35

def predict(self, test_data, **kwargs): """ Adjust new input by the values in the training data """ if test_data.shape[1]!=self.data.shape[1]: raise Exception("Test data has different number of columns than training data.") for i in xrange(0,test_data.shape[1]): ...

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48

16.363636

def one_vertical_total_stress(self, z_c): """ Determine the vertical total stress at a single depth z_c. :param z_c: depth from surface """ total_stress = 0.0 depths = self.depths end = 0 for layer_int in range(1, len(depths) + 1): l_index = l...

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42.088235

20.5

def getFeatureID(self, location): """ Returns the feature index associated with the provided location. In the case of a sphere, it is always the same if the location is valid. """ if not self.contains(location): return self.EMPTY_FEATURE return self.SPHERICAL_SURFACE

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def choices(self): """Menu options for new configuration files """ print("| {0}K{1}{2}eep the old and .new files, no changes".format( self.red, self.endc, self.br)) print("| {0}O{1}{2}verwrite all old configuration files with new " "ones".format(self.red, self.e...

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def recv_match(self, condition=None, type=None, blocking=False): '''recv the next message that matches the given condition type can be a string or a list of strings''' if type is not None and not isinstance(type, list): type = [type] while True: m = self.recv_msg(...

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def get_failing_line(xml_string, exc_msg): """ Extract the failing line from the XML string, as indicated by the line/column information in the exception message. Returns a tuple (lineno, colno, new_pos, line), where lineno and colno and marker_pos may be None. """ max_before = 500 # max c...

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def _calc_CI( sampler, modelidx=0, confs=[3, 1], last_step=False, e_range=None, e_npoints=100, threads=None, ): """Calculate confidence interval. """ from scipy import stats # If we are computing the samples for the confidence intervals, we need at # least one sample to ...

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def rename(self, new_name): """ Rename an image """ return self.get_data( "images/%s" % self.id, type=PUT, params={"name": new_name} )

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def create_client(storage_account, timeout, proxy): # type: (blobxfer.operations.azure.StorageAccount, # blobxfer.models.options.Timeout, # blobxfer.models.options.HttpProxy) -> FileService """Create file client :param blobxfer.operations.azure.StorageAccount storage_account: s...

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def _pfp__set_value(self, new_val): """Set the value, potentially converting an unsigned value to a signed one (and visa versa)""" if self._pfp__frozen: raise errors.UnmodifiableConst() if isinstance(new_val, IntBase): # will automatically convert correctly betwe...

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def _read_buffer(self, data_in): """Process the socket buffer, and direct the data to the appropriate channel. :rtype: bytes """ while data_in: data_in, channel_id, frame_in = self._handle_amqp_frame(data_in) if frame_in is None: break ...

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def mktemp(self, container: Container) -> str: """ Generates a temporary file for a given container. Returns: the path to the temporary file inside the given container. """ r = self.__api.post('containers/{}/tempfile'.format(container.uid)) if r.status_code =...

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def places_autocomplete_query(client, input_text, offset=None, location=None, radius=None, language=None): """ Returns Place predictions given a textual search query, such as "pizza near New York", and optional geographic bounds. :param input_text: The text query on which ...

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def build_rdn(self): """ Build the Relative Distinguished Name for this entry. """ bits = [] for field in self._meta.fields: if field.db_column and field.primary_key: bits.append("%s=%s" % (field.db_column, getatt...

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def add_gene(self, gene): """Add the information of a gene This adds a gene dict to variant['genes'] Args: gene (dict): A gene dictionary """ logger.debug("Adding gene {0} to variant {1}".format( gene, self['variant_id'])) self['gene...

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def do_restart(self, line): """ Attempt to restart the bot. """ self.bot._frame = 0 self.bot._namespace.clear() self.bot._namespace.update(self.bot._initial_namespace)

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def nulldata_script(data: bytes) -> NulldataScript: '''create nulldata (OP_return) script''' stack = StackData.from_bytes(data) return NulldataScript(stack)

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def simple_signatures(ambiguous_word: str, pos: str = None, lemma=True, stem=False, hyperhypo=True, stop=True, from_cache=True) -> dict: """ Returns a synsets_signatures dictionary that includes signature words of a sense from its: (i) definition (ii) example sentences (i...

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def parse_extras(self): # type: () -> None """ Parse extras from *self.line* and set them on the current object :returns: Nothing :rtype: None """ extras = None if "@" in self.line or self.is_vcs or self.is_url: line = "{0}".format(self.line) ...

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def current(self, fields=None): """Returns dict of current values for all tracked fields""" if fields is None: deferred_fields = self.deferred_fields if deferred_fields: fields = [ field for field in self.fields if field not...

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def take_nd(self, indexer, axis=0, new_mgr_locs=None, fill_tuple=None): """ Take values according to indexer and return them as a block. """ if fill_tuple is None: fill_value = None else: fill_value = fill_tuple[0] # axis doesn't matter; we are re...

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def freeze(self, no_etag=False): """Call this method if you want to make your response object ready for pickeling. This buffers the generator if there is one. This also sets the etag unless `no_etag` is set to `True`. """ if not no_etag: self.add_etag() supe...

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def process_model(model): """Returns a BiopaxProcessor for a BioPAX model object. Parameters ---------- model : org.biopax.paxtools.model.Model A BioPAX model object. Returns ------- bp : BiopaxProcessor A BiopaxProcessor containing the obtained BioPAX model in bp.model. ...

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def pillar_refresh(self, force_refresh=False, notify=False): ''' Refresh the pillar ''' if self.connected: log.debug('Refreshing pillar. Notify: %s', notify) async_pillar = salt.pillar.get_async_pillar( self.opts, self.opts['grains'...

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async def oauth2_request( self, url: str, access_token: str = None, post_args: Dict[str, Any] = None, **args: Any ) -> Any: """Fetches the given URL auth an OAuth2 access token. If the request is a POST, ``post_args`` should be provided. Query string ...

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33.363636

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def choropleth(self, *args, **kwargs): """Call the Choropleth class with the same arguments. This method may be deleted after a year from now (Nov 2018). """ warnings.warn( 'The choropleth method has been deprecated. Instead use the new ' 'Choropleth class, whic...

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def basis(start, stop=None, dim=1, sort="G", cross_truncation=1.): """ Create an N-dimensional unit polynomial basis. Args: start (int, numpy.ndarray): the minimum polynomial to include. If int is provided, set as lowest total order. If array of int, set as lower order alon...

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def order_target_value(id_or_ins, cash_amount, price=None, style=None): """ 买入/卖出并且自动调整该证券的仓位到一个目标价值。加仓时，cash_amount 代表现有持仓的价值加上即将花费（包含税费）的现金的总价值。减仓时，cash_amount 代表调整仓位的目标价至。需要注意，如果资金不足，该API将不会创建发送订单。 :param id_or_ins: 下单标的物 :type id_or_ins: :class:`~Instrument` object | `str` | List[:c...

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def stage_subset(self, *files_to_add: str): """ Stages a subset of files :param files_to_add: files to stage :type files_to_add: str """ LOGGER.info('staging files: %s', files_to_add) self.repo.git.add(*files_to_add, A=True)

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def remove_handler(self, handler: Handler, group: int = 0): """Removes a previously-added update handler. Make sure to provide the right group that the handler was added in. You can use the return value of the :meth:`add_handler` method, a tuple of (handler, group), and pass it directly...

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def set_topological_dag_upstreams(dag, ops, op_runs, runs_by_ops): """Set the upstream runs for the operation runs in the dag following the topological sort.""" sorted_ops = dags.sort_topologically(dag=dag) for op_id in sorted_ops: op_run_id = runs_by_ops[op_id] op_run = op_runs[op_run_id] ...

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def uealite( word, max_word_length=20, max_acro_length=8, return_rule_no=False, var='standard', ): """Return UEA-Lite stem. This is a wrapper for :py:meth:`UEALite.stem`. Parameters ---------- word : str The word to stem max_word_length : int The maximum wor...

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def renew_local_branch(branch, start_point, remote=False): """Make a new local branch from that start_point start_point is a git "commit-ish", e.g branch, tag, commit If a local branch already exists it is removed If remote is true then push the new branch to origin """ if branch in branches()...

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def build_mock_repository(conn_, file_path_list, verbose): """ Build the mock repository from the file_path list and fake connection instance. This allows both mof files and python files to be used to build the repository. If verbose is True, it displays the respository after it is build as mo...

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def iter_modules(path=None, prefix=''): """Yields (module_loader, name, ispkg) for all submodules on path, or, if path is None, all top-level modules on sys.path. 'path' should be either None or a list of paths to look for modules in. 'prefix' is a string to output on the front of every module nam...

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def workers(): """Show information on salactus workers. (slow)""" counter = Counter() for w in Worker.all(connection=worker.connection): for q in w.queues: counter[q.name] += 1 import pprint pprint.pprint(dict(counter))

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def informed_consent(self): """Create a URL for the user to give their consent through""" if self.typeable_handle is None: consent_url = [self.config['server']['server_url'], "/get_initial_consent?username="] consent_url.append(urlsafe_b64encode(self.us...

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def send_buffered_messages(self): """Send messages in out_stream to the Stream Manager""" while not self.out_stream.is_empty() and self._stmgr_client.is_registered: tuple_set = self.out_stream.poll() if isinstance(tuple_set, tuple_pb2.HeronTupleSet): tuple_set.src_task_id = self.my_pplan_hel...

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def set_column_prop(self, prop, values, repeat="up"): """ Specify the properties of the columns :param values: :param repeat: if 'up' then duplicate up the structure :return: """ values = np.array(values) if repeat == "up": assert len(values.s...

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def create(cls, user, **kwargs): """If parent resource is not an editable state, should not be able to create.""" parent_id = kwargs.get(cls.parent_resource.resource_type + '_id') try: parent = yield cls.parent_resource.get(parent_id) except couch.NotFound: msg = ...

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def lint(context): """Looks for errors in source code of your blog""" config = context.obj try: run('flake8 {dir} --exclude={exclude}'.format( dir=config['CWD'], exclude=','.join(EXCLUDE), )) except SubprocessError: context.exit(1)

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def set_metric_by_day(self, unique_identifier, metric, date, count, sync_agg=True, update_counter=True): """ Sets the count for the ``metric`` for ``unique_identifier``. You must specify a ``date`` for the ``count`` to be set on. Useful for resetting a metric count to 0 or decrementing a metric....

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def xception_exit(inputs): """Xception exit flow.""" with tf.variable_scope("xception_exit"): x = inputs x_shape = x.get_shape().as_list() if x_shape[1] is None or x_shape[2] is None: length_float = tf.to_float(tf.shape(x)[1]) length_float *= tf.to_float(tf.shape(x)[2]) spatial_dim_flo...

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def __prepare_usertexts(self): """Replace user-type text fields that start with "py3o." with genshi instructions. """ field_expr = "//text:user-field-get[starts-with(@text:name, 'py3o.')]" for content_tree in self.content_trees: for userfield in content_tree.xpath(...

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def logarithmic_interpolation_extrapolation(df, target_height): r""" Logarithmic inter- or extrapolates between the values of a data frame. This function can be used for the inter-/extrapolation of the wind speed if it is available at two or more different heights, to approximate the value at hub h...

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def nextSolarEclipse(date): """ Returns the Datetime of the maximum phase of the next global solar eclipse. """ eclipse = swe.solarEclipseGlobal(date.jd, backward=False) return Datetime.fromJD(eclipse['maximum'], date.utcoffset)

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def get_environment(self): """Return environment details.""" environment = junos_views.junos_environment_table(self.device) routing_engine = junos_views.junos_routing_engine_table(self.device) temperature_thresholds = junos_views.junos_temperature_thresholds(self.device) power_su...

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def metric_data( self, id, names, values=None, from_dt=None, to_dt=None, summarize=False): """ This API endpoint returns a list of values for each of the requested metrics. The list of available metrics can be returned using the Metric Name API endpoint. ...

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def render_constants(): """render generated constant files from templates""" generate_file("constant_enums.pxi", cython_enums, pjoin(root, 'zmq', 'backend', 'cython')) generate_file("constants.pxi", constants_pyx, pjoin(root, 'zmq', 'backend', 'cython')) generate_file("zmq_constants.h", ifndefs, pjoin(r...

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def plot_labels(labels, lattice=None, coords_are_cartesian=False, ax=None, **kwargs): """ Adds labels to a matplotlib Axes Args: labels: dict containing the label as a key and the coordinates as value. lattice: Lattice object used to convert from reciprocal to cartesian coor...

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def row(self): """Returns current data row: MyDBRow object, or None""" ret = None i = self.tableWidget.currentRow() if i >= 0: ret = self._data[i] return ret

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def _from_dict(cls, _dict): """Initialize a Collection object from a json dictionary.""" args = {} if 'collection_id' in _dict: args['collection_id'] = _dict.get('collection_id') if 'name' in _dict: args['name'] = _dict.get('name') if 'description' in _dic...

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def close_debt_position(self, symbol, account=None): """ Close a debt position and reclaim the collateral :param str symbol: Symbol to close debt position for :raises ValueError: if symbol has no open call position """ if not account: if "default_account" in ...

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def list(self, **params): """ Retrieve all lead unqualified reasons Returns all lead unqualified reasons available to the user according to the parameters provided :calls: ``get /lead_unqualified_reasons`` :param dict params: (optional) Search options. :return: List of ...

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def terminate(self, *, force: bool=False, timeout: float=30.0, step: float=1.0) -> None: '''Stop all scheduled and/or executing tasks, first by asking nicely, and then by waiting up to `timeout` seconds before forcefully stopping the asyncio event loop.''' if isinstanc...

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def _print(self, ms, style="TIP"): """ abstraction for managing color printing """ styles1 = {'IMPORTANT': Style.BRIGHT, 'TIP': Style.DIM, 'URI': Style.BRIGHT, 'TEXT': Fore.GREEN, 'MAGENTA': Fore.MAGENTA, 'BLU...

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37.75

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def get_array_for_fit(observables: dict, track_pt_bin: int, jet_pt_bin: int) -> histogram.Histogram1D: """ Get a Histogram1D associated with the selected jet and track pt bins. This is often used to retrieve data for fitting. Args: observables (dict): The observables from which the hist should be ...

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def pop_all(self): """Preserve the context stack by transferring it to a new instance.""" new_stack = type(self)() new_stack._exit_callbacks = self._exit_callbacks self._exit_callbacks = deque() return new_stack

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def inatoms(self, reverse=False): """Yield the singleton for every non-member.""" if reverse: return filterfalse(self.__and__, reversed(self._atoms)) return filterfalse(self.__and__, self._atoms)

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def value(self): """Returns the value of this Slot.""" if hasattr(self, '_value_decoded'): return self._value_decoded if self.value_blob is not None: encoded_value = self.value_blob.open().read() else: encoded_value = self.value_text self._value_decoded = json.loads(encoded_value...

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def mean_se(series, mult=1): """ Calculate mean and standard errors on either side """ m = np.mean(series) se = mult * np.sqrt(np.var(series) / len(series)) return pd.DataFrame({'y': [m], 'ymin': m-se, 'ymax': m+se})

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def do_attribute_query(self, entityid, subject_id, attribute=None, sp_name_qualifier=None, name_qualifier=None, nameid_format=None, real_id=None, consent=None, extensions=None, sign=False, binding=BINDING_SOAP, n...

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def run(bam_file, data, out_dir): """Create several log files""" m = {"base": None, "secondary": []} m.update(_mirbase_stats(data, out_dir)) m["secondary"].append(_seqcluster_stats(data, out_dir))

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41.6

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def _design_poll(self, name, mode, oldres, timeout=5, use_devmode=False): """ Poll for an 'async' action to be complete. :param string name: The name of the design document :param string mode: One of ``add`` or ``del`` to indicate whether we should check for addition or delet...

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def account_xdr_object(self): """Create PublicKey XDR object via public key bytes. :return: Serialized XDR of PublicKey type. """ return Xdr.types.PublicKey(Xdr.const.KEY_TYPE_ED25519, self.verifying_key.to_bytes())

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def obfuscate_unique(tokens, index, replace, replacement, *args): """ If the token string (a unique value anywhere) inside *tokens[index]* matches *replace*, return *replacement*. .. note:: This function is only for replacing absolutely unique ocurrences of *replace* (where we don't ha...

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def ex_call(func, args): """A function-call expression with only positional parameters. The function may be an expression or the name of a function. Each argument may be an expression or a value to be used as a literal. """ if isinstance(func, str): func = ex_rvalue(func) args = list(ar...

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def check_match(self, name): """ Check if a release version matches any of the specificed patterns. Parameters ========== name: str Release name Returns ======= bool: True if it matches, False otherwise. """ return...

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async def get_self_info(self, get_self_info_request): """Return info about the current user.""" response = hangouts_pb2.GetSelfInfoResponse() await self._pb_request('contacts/getselfinfo', get_self_info_request, response) return response

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def _find_free_location(self, free_locations, required_sectors=1, preferred=None): """ Given a list of booleans, find a list of <required_sectors> consecutive True values. If no such list is found, return length(free_locations). Assumes first two values are always False. """ ...

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def cleanup_subprocesses(): """On python exit: find possibly running subprocesses and kill them.""" # pylint: disable=redefined-outer-name, reimported # atexit functions tends to loose global imports sometimes so reimport # everything what is needed again here: import os import errno from mi...

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def rundata(self, strjson): """POST JSON data object to server""" d = json.loads(strjson) return self.api.data.post(d)

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27.8

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def parse_version_output(out): """ Parses the output of 'docker version --format="{{json .}}"'. Essentially just returns the parsed JSON string, like the Docker API does. Fields are slightly different however. :param out: CLI output. :type out: unicode | str :return: Parsed result. :rtype: ...

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31.071429

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def is_one_edit(s, t): """ :type s: str :type t: str :rtype: bool """ if len(s) > len(t): return is_one_edit(t, s) if len(t) - len(s) > 1 or t == s: return False for i in range(len(s)): if s[i] != t[i]: return s[i+1:] == t[i+1:] or s[i:] == t[i+1:] ...

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def availability_sets_list_available_sizes(name, resource_group, **kwargs): # pylint: disable=invalid-name ''' .. versionadded:: 2019.2.0 List all available virtual machine sizes that can be used to to create a new virtual machine in an existing availability set. :param name: The availability set...

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def get_obj_class(self, obj_type): """ Returns the object class based on parent and object types. In most cases the object class can be derived from object type alone but sometimes the same object type name is used for different object types so the parent (or even grandparent) type is r...

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54.045455

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