kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
async def send_script_message(self, message, context): """Handle a send_script message. See :meth:`AbstractDeviceAdapter.send_script`. """ script = message.get('script') conn_string = message.get('connection_string') client_id = context.user_data if message.get...	[ "async", "def", "send_script_message", "(", "self", ",", "message", ",", "context", ")", ":", "script", "=", "message", ".", "get", "(", "'script'", ")", "conn_string", "=", "message", ".", "get", "(", "'connection_string'", ")", "client_id", "=", "context",...	36.714286	22.357143
def get_user_config_filename(appname='notify'): """ Get user config filename. It will return operating system dependent config filename. Parameters ---------- appname : string An application name used for filename Returns ------- string A filename of user configura...	[ "def", "get_user_config_filename", "(", "appname", "=", "'notify'", ")", ":", "import", "platform", "system", "=", "platform", ".", "system", "(", ")", "if", "system", "==", "'Windows'", ":", "rootname", "=", "os", ".", "path", ".", "join", "(", "os", "....	29.851064	16.489362
def create_or_update(self, resource_group, name, container_group): """ Create a new container group :param resource_group: the name of the resource group :type resource_group: str :param name: the name of the container group :type name: str :param container_group...	[ "def", "create_or_update", "(", "self", ",", "resource_group", ",", "name", ",", "container_group", ")", ":", "self", ".", "connection", ".", "container_groups", ".", "create_or_update", "(", "resource_group", ",", "name", ",", "container_group", ")" ]	46.642857	20.5
def get_indices(self, src, ridx, mag): """ :param src: an UCERF source :param ridx: a set of rupture indices :param mag: magnitude to use to compute the integration distance :returns: array with the IDs of the sites close to the ruptures """ centroids = src.get_ce...	[ "def", "get_indices", "(", "self", ",", "src", ",", "ridx", ",", "mag", ")", ":", "centroids", "=", "src", ".", "get_centroids", "(", "ridx", ")", "mindistance", "=", "min_geodetic_distance", "(", "(", "centroids", "[", ":", ",", "0", "]", ",", "centro...	43.615385	11.923077
def list_product_releases(page_size=200, page_index=0, sort="", q=""): """ List all ProductReleases """ data = list_product_releases_raw(page_size, page_index, sort, q) if data: return utils.format_json_list(data)	[ "def", "list_product_releases", "(", "page_size", "=", "200", ",", "page_index", "=", "0", ",", "sort", "=", "\"\"", ",", "q", "=", "\"\"", ")", ":", "data", "=", "list_product_releases_raw", "(", "page_size", ",", "page_index", ",", "sort", ",", "q", ")...	33.571429	14.428571
def entry_at(cls, filepath, index): """:return: RefLogEntry at the given index :param filepath: full path to the index file from which to read the entry :param index: python list compatible index, i.e. it may be negative to specify an entry counted from the end of the list :...	[ "def", "entry_at", "(", "cls", ",", "filepath", ",", "index", ")", ":", "fp", "=", "open", "(", "filepath", ",", "'rb'", ")", "if", "index", "<", "0", ":", "return", "RefLogEntry", ".", "from_line", "(", "fp", ".", "readlines", "(", ")", "[", "inde...	37.586207	18.172414
def export_to_storage_bucket(self, bucket, namespace=None, entity_filter=None, labels=None): """ Export entities from Cloud Datastore to Cloud Storage for backup. .. note:: Keep in mind that this requests the Admin API not the Data API. .. seealso:: https://clou...	[ "def", "export_to_storage_bucket", "(", "self", ",", "bucket", ",", "namespace", "=", "None", ",", "entity_filter", "=", "None", ",", "labels", "=", "None", ")", ":", "admin_conn", "=", "self", ".", "get_conn", "(", ")", "output_uri_prefix", "=", "'gs://'", ...	35.717949	21.717949
def isreshapeable(new, old): """ Check to see if a proposed tuple of axes is a valid reshaping of the old axes by ensuring that they can be factored. Parameters ---------- new : tuple tuple of proposed axes old : tuple tuple of old axes """ new, old = tupleize(new)...	[ "def", "isreshapeable", "(", "new", ",", "old", ")", ":", "new", ",", "old", "=", "tupleize", "(", "new", ")", ",", "tupleize", "(", "old", ")", "if", "not", "prod", "(", "new", ")", "==", "prod", "(", "old", ")", ":", "raise", "ValueError", "(",...	23.722222	21.277778
def _get_computer_object(): ''' A helper function to get the object for the local machine Returns: object: Returns the computer object for the local machine ''' with salt.utils.winapi.Com(): nt = win32com.client.Dispatch('AdsNameSpaces') return nt.GetObject('', 'WinNT://.,comput...	[ "def", "_get_computer_object", "(", ")", ":", "with", "salt", ".", "utils", ".", "winapi", ".", "Com", "(", ")", ":", "nt", "=", "win32com", ".", "client", ".", "Dispatch", "(", "'AdsNameSpaces'", ")", "return", "nt", ".", "GetObject", "(", "''", ",", ...	31.5	22.3
def authenticate(url, account, key, by='name', expires=0, timestamp=None, timeout=None, request_type="xml", admin_auth=False, use_password=False, raise_on_error=False): """ Authenticate to the Zimbra server :param url: URL of Zimbra SOAP service :param account: The accoun...	[ "def", "authenticate", "(", "url", ",", "account", ",", "key", ",", "by", "=", "'name'", ",", "expires", "=", "0", ",", "timestamp", "=", "None", ",", "timeout", "=", "None", ",", "request_type", "=", "\"xml\"", ",", "admin_auth", "=", "False", ",", ...	26.028571	23.933333
def normalize_job_id(job_id): """ Convert a value to a job id. :param job_id: Value to convert. :type job_id: int, str :return: The job id. :rtype: :py:class:`uuid.UUID` """ if not isinstance(job_id, uuid.UUID): job_id = uuid.UUID(job_id) return job_id	[ "def", "normalize_job_id", "(", "job_id", ")", ":", "if", "not", "isinstance", "(", "job_id", ",", "uuid", ".", "UUID", ")", ":", "job_id", "=", "uuid", ".", "UUID", "(", "job_id", ")", "return", "job_id" ]	21.083333	12.916667
def operations(self): """Instance depends on the API version: * 2017-03-01: :class:`Operations<azure.mgmt.containerregistry.v2017_03_01.operations.Operations>` * 2017-10-01: :class:`Operations<azure.mgmt.containerregistry.v2017_10_01.operations.Operations>` * 2018-02-01-preview...	[ "def", "operations", "(", "self", ")", ":", "api_version", "=", "self", ".", "_get_api_version", "(", "'operations'", ")", "if", "api_version", "==", "'2017-03-01'", ":", "from", ".", "v2017_03_01", ".", "operations", "import", "Operations", "as", "OperationClas...	65.8	35.6
def row_cells(self, row_idx): """ Sequence of cells in the row at row_idx in this table. """ column_count = self._column_count start = row_idx * column_count end = start + column_count return self._cells[start:end]	[ "def", "row_cells", "(", "self", ",", "row_idx", ")", ":", "column_count", "=", "self", ".", "_column_count", "start", "=", "row_idx", "*", "column_count", "end", "=", "start", "+", "column_count", "return", "self", ".", "_cells", "[", "start", ":", "end",...	33.125	5.875
def angle_iter(self, g_nums, ats_1, ats_2, ats_3, invalid_error=False): """ Iterator over selected atomic angles. Angles are in degrees as with :meth:`angle_single`. See `above <toc-generators_>`_ for more information on calling options. Parameters ---------- g...	[ "def", "angle_iter", "(", "self", ",", "g_nums", ",", "ats_1", ",", "ats_2", ",", "ats_3", ",", "invalid_error", "=", "False", ")", ":", "# Suitability of ats_n indices will be checked within the", "# self.angle_single() calls and thus no check is needed here.", "# Import th...	30.464286	21.178571
def name(self): """ Returns name of the digest """ if not hasattr(self, 'digest_name'): self.digest_name = Oid(libcrypto.EVP_MD_type(self.digest) ).longname() return self.digest_name	[ "def", "name", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'digest_name'", ")", ":", "self", ".", "digest_name", "=", "Oid", "(", "libcrypto", ".", "EVP_MD_type", "(", "self", ".", "digest", ")", ")", ".", "longname", "(", ")", ...	41.166667	12.166667
def _ping_loop(self): """This background task sends a PING to the server at the requested interval. """ self.pong_received = True self.ping_loop_event.clear() while self.state == 'connected': if not self.pong_received: self.logger.info( ...	[ "def", "_ping_loop", "(", "self", ")", ":", "self", ".", "pong_received", "=", "True", "self", ".", "ping_loop_event", ".", "clear", "(", ")", "while", "self", ".", "state", "==", "'connected'", ":", "if", "not", "self", ".", "pong_received", ":", "self"...	38.666667	10
def cmvnw(vec, win_size=301, variance_normalization=False): """ This function is aimed to perform local cepstral mean and variance normalization on a sliding window. The code assumes that there is one observation per row. Args: vec (array): input feature matrix (size:(num_observatio...	[ "def", "cmvnw", "(", "vec", ",", "win_size", "=", "301", ",", "variance_normalization", "=", "False", ")", ":", "# Get the shapes", "eps", "=", "2", "**", "-", "30", "rows", ",", "cols", "=", "vec", ".", "shape", "# Windows size must be odd.", "assert", "i...	35.925926	19.407407
def copy(self): """Copy a reaction The referenced metabolites and genes are also copied. """ # no references to model when copying model = self._model self._model = None for i in self._metabolites: i._model = None for i in self._genes: ...	[ "def", "copy", "(", "self", ")", ":", "# no references to model when copying", "model", "=", "self", ".", "_model", "self", ".", "_model", "=", "None", "for", "i", "in", "self", ".", "_metabolites", ":", "i", ".", "_model", "=", "None", "for", "i", "in",...	27.136364	13.272727
def delete(self, network): """ Wraps the standard delete() method to catch expected exceptions and raise the appropriate pyrax exceptions. """ try: return super(CloudNetworkClient, self).delete(network) except exc.Forbidden as e: # Network is in us...	[ "def", "delete", "(", "self", ",", "network", ")", ":", "try", ":", "return", "super", "(", "CloudNetworkClient", ",", "self", ")", ".", "delete", "(", "network", ")", "except", "exc", ".", "Forbidden", "as", "e", ":", "# Network is in use", "raise", "ex...	39.4	16.6
def assign_power_curve(self, weather_df): r""" Calculates the power curve of the wind turbine cluster. The power curve is aggregated from the wind farms' and wind turbines' power curves by using :func:`power_plant.assign_power_curve`. Depending on the parameters of the WindTurbi...	[ "def", "assign_power_curve", "(", "self", ",", "weather_df", ")", ":", "# Set turbulence intensity for assigning power curve", "turbulence_intensity", "=", "(", "weather_df", "[", "'turbulence_intensity'", "]", ".", "values", ".", "mean", "(", ")", "if", "'turbulence_in...	46.892308	23.092308
def _show_message(self, text): """Show message on splash screen.""" self.splash.showMessage(text, Qt.AlignBottom \| Qt.AlignCenter \| Qt.AlignAbsolute, QColor(Qt.white))	[ "def", "_show_message", "(", "self", ",", "text", ")", ":", "self", ".", "splash", ".", "showMessage", "(", "text", ",", "Qt", ".", "AlignBottom", "\|", "Qt", ".", "AlignCenter", "\|", "Qt", ".", "AlignAbsolute", ",", "QColor", "(", "Qt", ".", "white", ...	53.75	17
def split_args_list(tokens, loc): """Splits function definition arguments.""" req_args, def_args, star_arg, kwd_args, dubstar_arg = [], [], None, [], None pos = 0 for arg in tokens: if len(arg) == 1: if arg[0] == "*": # star sep (pos = 3) if pos >= 3: ...	[ "def", "split_args_list", "(", "tokens", ",", "loc", ")", ":", "req_args", ",", "def_args", ",", "star_arg", ",", "kwd_args", ",", "dubstar_arg", "=", "[", "]", ",", "[", "]", ",", "None", ",", "[", "]", ",", "None", "pos", "=", "0", "for", "arg", ...	43.302326	21.139535
def main(args=None): """Start application.""" Config.options, Config.args = parse(args) logger() if Config.options.aeidon or Config.options.fix: start_aeidon() else: start_srt() if Config.options.fix: sys.exit(0) if not Config.results: basenames = [os.pat...	[ "def", "main", "(", "args", "=", "None", ")", ":", "Config", ".", "options", ",", "Config", ".", "args", "=", "parse", "(", "args", ")", "logger", "(", ")", "if", "Config", ".", "options", ".", "aeidon", "or", "Config", ".", "options", ".", "fix", ...	24.434783	23.478261
def rouge_l(hypotheses, references): """ Calculate ROUGE-L F1, precision, recall scores """ rouge_l = [ rouge_l_sentence_level([hyp], [ref]) for hyp, ref in zip(hypotheses, references) ] rouge_l_f, _, _ = map(np.mean, zip(*rouge_l)) return rouge_l_f	[ "def", "rouge_l", "(", "hypotheses", ",", "references", ")", ":", "rouge_l", "=", "[", "rouge_l_sentence_level", "(", "[", "hyp", "]", ",", "[", "ref", "]", ")", "for", "hyp", ",", "ref", "in", "zip", "(", "hypotheses", ",", "references", ")", "]", "...	28.4	11.8
def resolve(self, *keys): ''' Returns resolved instances for given provider keys. If only one positional argument is given, only one is returned. :param keys: Provider keys :type keys: tuple :return: Resolved instance(s); if only one key given, otherwise list of them. ...	[ "def", "resolve", "(", "self", ",", "", "keys", ")", ":", "instances", "=", "list", "(", "self", ".", "iresolve", "(", "", "keys", ")", ")", "if", "len", "(", "keys", ")", "==", "1", ":", "return", "instances", "[", "0", "]", "return", "instanc...	31.866667	21.6
def send_file(self, path, contents, shutit_pexpect_child=None, truncate=False, note=None, user=None, echo=False, group=None, loglevel=logging.INFO, encoding=None): """S...	[ "def", "send_file", "(", "self", ",", "path", ",", "contents", ",", "shutit_pexpect_child", "=", "None", ",", "truncate", "=", "False", ",", "note", "=", "None", ",", "user", "=", "None", ",", "echo", "=", "False", ",", "group", "=", "None", ",", "lo...	42.027778	17.777778
def plots_html_page(): """Generate general statistics Output is an html page, rendered to 'plots_html_page.html' in the output directory. """ # page template template = jenv.get_template("plots_html_page.html") # container for template context context = dict() # a database client/sess...	[ "def", "plots_html_page", "(", ")", ":", "# page template", "template", "=", "jenv", ".", "get_template", "(", "\"plots_html_page.html\"", ")", "# container for template context", "context", "=", "dict", "(", ")", "# a database client/session to run queries in", "cl", "="...	34.446429	23.294643
def parse_roles(self, fetched_role, params): """ Parse a single IAM role and fetch additional data """ role = {} role['instances_count'] = 'N/A' # When resuming upon throttling error, skip if already fetched if fetched_role['RoleName'] in self.roles: r...	[ "def", "parse_roles", "(", "self", ",", "fetched_role", ",", "params", ")", ":", "role", "=", "{", "}", "role", "[", "'instances_count'", "]", "=", "'N/A'", "# When resuming upon throttling error, skip if already fetched", "if", "fetched_role", "[", "'RoleName'", "]...	51.242424	20.636364
def authenticate(self, is_global=True): """Authenticates against the API server. :param is_global: If True, authenticate globally. Local login if False. :raise AuthenticationException: Raises if there was an issue with authenticating or logging in. :raise MyGeotabException: Raises when ...	[ "def", "authenticate", "(", "self", ",", "is_global", "=", "True", ")", ":", "auth_data", "=", "dict", "(", "database", "=", "self", ".", "credentials", ".", "database", ",", "userName", "=", "self", ".", "credentials", ".", "username", ",", "password", ...	55.129032	23.935484
def clr(args): """ %prog blastfile fastafiles Calculate the vector clear range file based BLAST to the vectors. """ p = OptionParser(clr.__doc__) opts, args = p.parse_args(args) if len(args) < 2: sys.exit(not p.print_help()) blastfile = args[0] fastafiles = args[1:] s...	[ "def", "clr", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "clr", ".", "__doc__", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "<", "2", ":", "sys", ".", "exit", "(", "not", ...	24.075	19.075
def FloatField(default=NOTHING, required=True, repr=True, cmp=True, key=None): """ Create new float field on a model. :param default: any float value :param bool required: whether or not the object is invalid if not provided. :param bool repr: include this field should appear in obje...	[ "def", "FloatField", "(", "default", "=", "NOTHING", ",", "required", "=", "True", ",", "repr", "=", "True", ",", "cmp", "=", "True", ",", "key", "=", "None", ")", ":", "default", "=", "_init_fields", ".", "init_default", "(", "required", ",", "default...	47.75	19.625
def as_compatible_data(data, fastpath=False): """Prepare and wrap data to put in a Variable. - If data does not have the necessary attributes, convert it to ndarray. - If data has dtype=datetime64, ensure that it has ns precision. If it's a pandas.Timestamp, convert it to datetime64. - If data is...	[ "def", "as_compatible_data", "(", "data", ",", "fastpath", "=", "False", ")", ":", "if", "fastpath", "and", "getattr", "(", "data", ",", "'ndim'", ",", "0", ")", ">", "0", ":", "# can't use fastpath (yet) for scalars", "return", "_maybe_wrap_data", "(", "data"...	33.654545	17.236364
def on_close(self): ''' Called when client closes this connection. Cleanup is done here. ''' if self.id in self.funcserver.websocks: self.funcserver.websocks[self.id] = None ioloop = tornado.ioloop.IOLoop.instance() ioloop.add_callback(lambda:...	[ "def", "on_close", "(", "self", ")", ":", "if", "self", ".", "id", "in", "self", ".", "funcserver", ".", "websocks", ":", "self", ".", "funcserver", ".", "websocks", "[", "self", ".", "id", "]", "=", "None", "ioloop", "=", "tornado", ".", "ioloop", ...	37.3125	22.4375
def _translate_str(self, oprnd1, oprnd2, oprnd3): """Return a formula representation of a STR instruction. """ assert oprnd1.size and oprnd3.size op1_var = self._translate_src_oprnd(oprnd1) op3_var, op3_var_constrs = self._translate_dst_oprnd(oprnd3) if oprnd3.size > op...	[ "def", "_translate_str", "(", "self", ",", "oprnd1", ",", "oprnd2", ",", "oprnd3", ")", ":", "assert", "oprnd1", ".", "size", "and", "oprnd3", ".", "size", "op1_var", "=", "self", ".", "_translate_src_oprnd", "(", "oprnd1", ")", "op3_var", ",", "op3_var_co...	36.6875	17.375
def _new_stream(self, idx): '''Randomly select and create a new stream. Parameters ---------- idx : int, [0:n_streams - 1] The stream index to replace ''' # Don't activate the stream if the weight is 0 or None if self.stream_weights_[idx]: ...	[ "def", "_new_stream", "(", "self", ",", "idx", ")", ":", "# Don't activate the stream if the weight is 0 or None", "if", "self", ".", "stream_weights_", "[", "idx", "]", ":", "self", ".", "streams_", "[", "idx", "]", "=", "self", ".", "streamers", "[", "idx", ...	30.4375	16.4375
def glossary_path(cls, project, location, glossary): """Return a fully-qualified glossary string.""" return google.api_core.path_template.expand( "projects/{project}/locations/{location}/glossaries/{glossary}", project=project, location=location, glossary=...	[ "def", "glossary_path", "(", "cls", ",", "project", ",", "location", ",", "glossary", ")", ":", "return", "google", ".", "api_core", ".", "path_template", ".", "expand", "(", "\"projects/{project}/locations/{location}/glossaries/{glossary}\"", ",", "project", "=", "...	41.5	15.375
def parse(readDataInstance): """ Returns a new L{NetMetaDataTableHeader} object. @type readDataInstance: L{ReadData} @param readDataInstance: A L{ReadData} object with data to be parsed as a L{NetMetaDataTableHeader} object. @rtype: L{NetMetaDataTableHeader} ...	[ "def", "parse", "(", "readDataInstance", ")", ":", "th", "=", "NetMetaDataTableHeader", "(", ")", "th", ".", "reserved_1", ".", "value", "=", "readDataInstance", ".", "readDword", "(", ")", "th", ".", "majorVersion", ".", "value", "=", "readDataInstance", "....	40.380952	19.714286
def uf_pelo_codigo(codigo_ibge): """Retorna a UF para o código do IBGE informado.""" idx = [i for s, i, n, r in UNIDADES_FEDERACAO].index(codigo_ibge) return UNIDADES_FEDERACAO[idx][_UF_SIGLA]	[ "def", "uf_pelo_codigo", "(", "codigo_ibge", ")", ":", "idx", "=", "[", "i", "for", "s", ",", "i", ",", "n", ",", "r", "in", "UNIDADES_FEDERACAO", "]", ".", "index", "(", "codigo_ibge", ")", "return", "UNIDADES_FEDERACAO", "[", "idx", "]", "[", "_UF_SI...	50.25	10.5
def ListMigrationsToProcess(migrations_root, current_migration_number ): """Lists filenames of migrations with numbers bigger than a given one.""" migrations = [] for m in os.listdir(migrations_root): if (current_migration_number is None or _Migra...	[ "def", "ListMigrationsToProcess", "(", "migrations_root", ",", "current_migration_number", ")", ":", "migrations", "=", "[", "]", "for", "m", "in", "os", ".", "listdir", "(", "migrations_root", ")", ":", "if", "(", "current_migration_number", "is", "None", "or",...	40.363636	13.363636
def p_created_1(self, p): """created : CREATED DATE""" try: if six.PY2: value = p[2].decode(encoding='utf-8') else: value = p[2] self.builder.set_created_date(self.document, value) except CardinalityError: self.more_...	[ "def", "p_created_1", "(", "self", ",", "p", ")", ":", "try", ":", "if", "six", ".", "PY2", ":", "value", "=", "p", "[", "2", "]", ".", "decode", "(", "encoding", "=", "'utf-8'", ")", "else", ":", "value", "=", "p", "[", "2", "]", "self", "."...	34.9	15.9
def format_string(format, *cols): """ Formats the arguments in printf-style and returns the result as a string column. :param col: the column name of the numeric value to be formatted :param d: the N decimal places >>> df = spark.createDataFrame([(5, "hello")], ['a', 'b']) >>> df.select(format...	[ "def", "format_string", "(", "format", ",", "*", "cols", ")", ":", "sc", "=", "SparkContext", ".", "_active_spark_context", "return", "Column", "(", "sc", ".", "_jvm", ".", "functions", ".", "format_string", "(", "format", ",", "_to_seq", "(", "sc", ",", ...	40.692308	22.692308
def resource_from_etree(self, etree, resource_class): """Construct a Resource from an etree. Parameters: etree - the etree to parse resource_class - class of Resource object to create The parsing is properly namespace aware but we search just for the elements wanted a...	[ "def", "resource_from_etree", "(", "self", ",", "etree", ",", "resource_class", ")", ":", "loc_elements", "=", "etree", ".", "findall", "(", "'{'", "+", "SITEMAP_NS", "+", "\"}loc\"", ")", "if", "(", "len", "(", "loc_elements", ")", ">", "1", ")", ":", ...	48.079365	17.587302
def get_size( self, bucket: str, key: str ) -> int: """ Retrieves the filesize :param bucket: the bucket the object resides in. :param key: the key of the object for which size is being retrieved. :return: integer equal to filesize in bytes...	[ "def", "get_size", "(", "self", ",", "bucket", ":", "str", ",", "key", ":", "str", ")", "->", "int", ":", "blob_obj", "=", "self", ".", "_get_blob_obj", "(", "bucket", ",", "key", ")", "return", "blob_obj", ".", "size" ]	30.769231	16
def remove_filter_set(self, filter_name): """ Remove filter set by name :param filter_name: str """ if filter_name in self._filter_sets: del self._filter_sets[filter_name] else: raise ValueError('Unknown filter set name.')	[ "def", "remove_filter_set", "(", "self", ",", "filter_name", ")", ":", "if", "filter_name", "in", "self", ".", "_filter_sets", ":", "del", "self", ".", "_filter_sets", "[", "filter_name", "]", "else", ":", "raise", "ValueError", "(", "'Unknown filter set name.'"...	31.777778	7.777778
def write_array(self, outfile, pixels): """ Write an array that holds all the image values as a PNG file on the output file. See also :meth:`write` method. """ if self.interlace: if type(pixels) != array: # Coerce to array type ...	[ "def", "write_array", "(", "self", ",", "outfile", ",", "pixels", ")", ":", "if", "self", ".", "interlace", ":", "if", "type", "(", "pixels", ")", "!=", "array", ":", "# Coerce to array type", "fmt", "=", "'BH'", "[", "self", ".", "bitdepth", ">", "8",...	36.133333	11.866667
def fmtinfo(value): """Returns (typetag, text, is_imprecise). Unlike other functions that operate on measurements, this also operates on bools, ints, and strings. """ if value is None: raise ValueError('cannot format None!') if isinstance(value, text_type): return '', value, False ...	[ "def", "fmtinfo", "(", "value", ")", ":", "if", "value", "is", "None", ":", "raise", "ValueError", "(", "'cannot format None!'", ")", "if", "isinstance", "(", "value", ",", "text_type", ")", ":", "return", "''", ",", "value", ",", "False", "if", "isinsta...	30.407407	19.222222
def dnsdumpster(domain, output_dir): """Query dnsdumpster.com.""" response = requests.Session().get('https://dnsdumpster.com/').text csrf_token = re.search( r"name='csrfmiddlewaretoken' value='(.*?)'", response).group(1) cookies = {'csrftoken': csrf_token} headers = {'Referer': 'https://dns...	[ "def", "dnsdumpster", "(", "domain", ",", "output_dir", ")", ":", "response", "=", "requests", ".", "Session", "(", ")", ".", "get", "(", "'https://dnsdumpster.com/'", ")", ".", "text", "csrf_token", "=", "re", ".", "search", "(", "r\"name='csrfmiddlewaretoken...	45.125	19.75
def load_febrl4(return_links=False): """Load the FEBRL 4 datasets. The Freely Extensible Biomedical Record Linkage (Febrl) package is distributed with a dataset generator and four datasets generated with the generator. This function returns the fourth Febrl dataset as a :class:`pandas.DataFrame`. ...	[ "def", "load_febrl4", "(", "return_links", "=", "False", ")", ":", "df_a", "=", "_febrl_load_data", "(", "'dataset4a.csv'", ")", "df_b", "=", "_febrl_load_data", "(", "'dataset4b.csv'", ")", "if", "return_links", ":", "links", "=", "pandas", ".", "MultiIndex", ...	35.756098	22.195122
def compare(expr, value, regex_expr=False): """ Compares an string or regular expression againast a given value. Arguments: expr (str\|regex): string or regular expression value to compare. value (str): value to compare against to. regex_expr (bool, optional): enables string based re...	[ "def", "compare", "(", "expr", ",", "value", ",", "regex_expr", "=", "False", ")", ":", "# Strict equality comparison", "if", "expr", "==", "value", ":", "return", "True", "# Infer negate expression to match, if needed", "negate", "=", "False", "if", "isinstance", ...	25.714286	21.085714
def rvir(self,H=70.,Om=0.3,overdens=200.,wrtcrit=False,ro=None,vo=None, use_physical=False): # use_physical necessary bc of pop=False, does nothing inside """ NAME: rvir PURPOSE: calculate the virial radius for this density distribution INPUT: ...	[ "def", "rvir", "(", "self", ",", "H", "=", "70.", ",", "Om", "=", "0.3", ",", "overdens", "=", "200.", ",", "wrtcrit", "=", "False", ",", "ro", "=", "None", ",", "vo", "=", "None", ",", "use_physical", "=", "False", ")", ":", "# use_physical necess...	32.222222	29.555556
def resample(self, data, input_rate): """ Microphone may not support our native processing sampling rate, so resample from input_rate to RATE_PROCESS here for webrtcvad and deepspeech Args: data (binary): Input audio stream input_rate (int): Input audio r...	[ "def", "resample", "(", "self", ",", "data", ",", "input_rate", ")", ":", "data16", "=", "np", ".", "fromstring", "(", "string", "=", "data", ",", "dtype", "=", "np", ".", "int16", ")", "resample_size", "=", "int", "(", "len", "(", "data16", ")", "...	41.866667	18.533333
def njsd(network, ref_gene_expression_dict, query_gene_expression_dict, gene_set): """Calculate Jensen-Shannon divergence between query and reference gene expression profile. """ gene_jsd_dict = dict() reference_genes = ref_gene_expression_dict.keys() assert len(reference_genes) != 'Reference g...	[ "def", "njsd", "(", "network", ",", "ref_gene_expression_dict", ",", "query_gene_expression_dict", ",", "gene_set", ")", ":", "gene_jsd_dict", "=", "dict", "(", ")", "reference_genes", "=", "ref_gene_expression_dict", ".", "keys", "(", ")", "assert", "len", "(", ...	45.111111	29.407407
def copy_figure_to_clipboard(figure='gcf'): """ Copies the specified figure to the system clipboard. Specifying 'gcf' will use the current figure. """ try: import pyqtgraph as _p # Get the current figure if necessary if figure is 'gcf': figure = _s.pylab.gcf(...	[ "def", "copy_figure_to_clipboard", "(", "figure", "=", "'gcf'", ")", ":", "try", ":", "import", "pyqtgraph", "as", "_p", "# Get the current figure if necessary ", "if", "figure", "is", "'gcf'", ":", "figure", "=", "_s", ".", "pylab", ".", "gcf", "(", ")...	37.285714	20.809524
def parse_set(string): """Parse set from comma separated string.""" string = string.strip() if string: return set(string.split(",")) else: return set()	[ "def", "parse_set", "(", "string", ")", ":", "string", "=", "string", ".", "strip", "(", ")", "if", "string", ":", "return", "set", "(", "string", ".", "split", "(", "\",\"", ")", ")", "else", ":", "return", "set", "(", ")" ]	25.285714	15.857143
def not_query(expression): """Apply logical not operator to expression.""" compiled_expression = compile_query(expression) def _not(index, expression=compiled_expression): """Return store key for documents that satisfy expression.""" all_keys = index.get_all_keys() returned_keys = e...	[ "def", "not_query", "(", "expression", ")", ":", "compiled_expression", "=", "compile_query", "(", "expression", ")", "def", "_not", "(", "index", ",", "expression", "=", "compiled_expression", ")", ":", "\"\"\"Return store key for documents that satisfy expression.\"\"\"...	37.454545	15.636364
def check_assumptions( self, training_df, advice=True, show_plots=False, p_value_threshold=0.01, plot_n_bootstraps=10 ): """ Use this function to test the proportional hazards assumption. See usage example at https://lifelines.readthedocs.io/en/latest/jupyter_notebooks/Proportional%2...	[ "def", "check_assumptions", "(", "self", ",", "training_df", ",", "advice", "=", "True", ",", "show_plots", "=", "False", ",", "p_value_threshold", "=", "0.01", ",", "plot_n_bootstraps", "=", "10", ")", ":", "if", "not", "training_df", ".", "index", ".", "...	45.990148	27.152709
def run(self, default=None): """Parse the command line arguments. default: Name of default command to run if no arguments are passed. """ parent, *sys_args = sys.argv self.parent = Path(parent).stem cmd_name = default if sys_args: cmd_nam...	[ "def", "run", "(", "self", ",", "default", "=", "None", ")", ":", "parent", ",", "", "*", "sys_args", "=", "sys", ".", "argv", "self", ".", "parent", "=", "Path", "(", "parent", ")", ".", "stem", "cmd_name", "=", "default", "if", "sys_args", ":", ...	28.76	17.44
def prepare_communication (self): """ Prepare the buffers to be used for later communications """ RectPartitioner.prepare_communication (self) if self.lower_neighbors[0]>=0: self.in_lower_buffers = [zeros(1, float)] self.out_lower_buffers...	[ "def", "prepare_communication", "(", "self", ")", ":", "RectPartitioner", ".", "prepare_communication", "(", "self", ")", "if", "self", ".", "lower_neighbors", "[", "0", "]", ">=", "0", ":", "self", ".", "in_lower_buffers", "=", "[", "zeros", "(", "1", ","...	36.615385	12.615385
def _xml(self): """ Returns the color information as XML. The XML has the following structure: <colors query=""> <color name="" weight="" /> <rgb r="" g="" b="" /> <shade name="" weight="" /> </color> </colors> Not...	[ "def", "_xml", "(", "self", ")", ":", "grouped", "=", "self", ".", "_weight_by_hue", "(", ")", "xml", "=", "\"<colors query=\\\"\"", "+", "self", ".", "name", "+", "\"\\\" tags=\\\"\"", "+", "\", \"", ".", "join", "(", "self", ".", "tags", ")", "+", "\...	42.818182	22.818182
def delete(name): '''Delete the given virtual folder. This operation is irreversible! NAME: Name of a virtual folder. ''' with Session() as session: try: session.VFolder(name).delete() print_done('Deleted.') except Exception as e: print_error(e) ...	[ "def", "delete", "(", "name", ")", ":", "with", "Session", "(", ")", "as", "session", ":", "try", ":", "session", ".", "VFolder", "(", "name", ")", ".", "delete", "(", ")", "print_done", "(", "'Deleted.'", ")", "except", "Exception", "as", "e", ":", ...	27.25	18.25
def get_text(self, deserialized_json): """Recursively get text from subcomponents of a deserialized json. To enforce the same order on the documents, make sure to read keys of deserialized_json in a consistent (alphabetical) order. """ if isinstance(deserialized_json, dict): ...	[ "def", "get_text", "(", "self", ",", "deserialized_json", ")", ":", "if", "isinstance", "(", "deserialized_json", ",", "dict", ")", ":", "result", "=", "''", "for", "key", "in", "sorted", "(", "deserialized_json", ")", ":", "result", "+=", "self", ".", "...	37.761905	16.047619
def load_batch_x(path_batch, flatten = False, time_major = False): """ Loads a batch of input features given a list of paths to numpy arrays in that batch.""" utterances = [np.load(str(path)) for path in path_batch] utter_lens = [utterance.shape[0] for utterance in utt...	[ "def", "load_batch_x", "(", "path_batch", ",", "flatten", "=", "False", ",", "time_major", "=", "False", ")", ":", "utterances", "=", "[", "np", ".", "load", "(", "str", "(", "path", ")", ")", "for", "path", "in", "path_batch", "]", "utter_lens", "=", ...	39	12.176471
def interm_size(self)-> Sequence[Sequence[int]]: '''The size of each intermediate fluent in canonical order. Returns: Sequence[Sequence[int]]: A tuple of tuple of integers representing the shape and size of each fluent. ''' fluents = self.domain.intermediate_flue...	[ "def", "interm_size", "(", "self", ")", "->", "Sequence", "[", "Sequence", "[", "int", "]", "]", ":", "fluents", "=", "self", ".", "domain", ".", "intermediate_fluents", "ordering", "=", "self", ".", "domain", ".", "interm_fluent_ordering", "return", "self",...	42	20.6
def distance2_to_line(pt, l0, l1): '''The perpendicular distance squared from a point to a line pt - point in question l0 - one point on the line l1 - another point on the line ''' pt = np.atleast_1d(pt) l0 = np.atleast_1d(l0) l1 = np.atleast_1d(l1) reshape = pt.ndim == 1 if...	[ "def", "distance2_to_line", "(", "pt", ",", "l0", ",", "l1", ")", ":", "pt", "=", "np", ".", "atleast_1d", "(", "pt", ")", "l0", "=", "np", ".", "atleast_1d", "(", "l0", ")", "l1", "=", "np", ".", "atleast_1d", "(", "l1", ")", "reshape", "=", "...	31.052632	17.578947
def record_context(self, space, frame): """Record a __context__ for this exception from the current frame if one exists. __context__ is otherwise lazily determined from the traceback. However the current frame.last_exception must be checked for a __context__ before this Operatio...	[ "def", "record_context", "(", "self", ",", "space", ",", "frame", ")", ":", "last_exception", "=", "frame", ".", "last_exception", "if", "(", "last_exception", "is", "not", "None", "and", "not", "frame", ".", "hide", "(", ")", "or", "last_exception", "is",...	52.166667	18.166667
def artist_versions(self, name=None, updater_name=None, updater_id=None, artist_id=None, is_active=None, is_banned=None, order=None): """Get list of artist versions (Requires login). Parameters: name (str): updater_name (str): ...	[ "def", "artist_versions", "(", "self", ",", "name", "=", "None", ",", "updater_name", "=", "None", ",", "updater_id", "=", "None", ",", "artist_id", "=", "None", ",", "is_active", "=", "None", ",", "is_banned", "=", "None", ",", "order", "=", "None", "...	38.25	13.458333
def train(self, sentences, save_loc=None, nr_iter=5): '''Train a model from sentences, and save it at ``save_loc``. ``nr_iter`` controls the number of Perceptron training iterations. :param sentences: A list of (words, tags) tuples. :param save_loc: If not ``None``, saves a pickled mode...	[ "def", "train", "(", "self", ",", "sentences", ",", "save_loc", "=", "None", ",", "nr_iter", "=", "5", ")", ":", "self", ".", "_make_tagdict", "(", "sentences", ")", "self", ".", "model", ".", "classes", "=", "self", ".", "classes", "for", "iter_", "...	45.885714	17.428571
def setup(self, paths=None): # pylint: disable=arguments-differ """Sets up the _paths attribute. Args: paths: Comma-separated list of strings representing the paths to collect. """ if not paths: self.state.add_error( 'No `paths` argument provided in recipe, bailing', critical=Tru...	[ "def", "setup", "(", "self", ",", "paths", "=", "None", ")", ":", "# pylint: disable=arguments-differ", "if", "not", "paths", ":", "self", ".", "state", ".", "add_error", "(", "'No `paths` argument provided in recipe, bailing'", ",", "critical", "=", "True", ")", ...	35.818182	24.272727
def set_tracking_id(self, data, clear=False): """ Add tracking-id data to the tracking_id group. :param data: A dictionary of key/value pairs. Keys must be strings. Values can be strings or numeric values. :param clear: If set, any existing tracking-id data will be removed. ...	[ "def", "set_tracking_id", "(", "self", ",", "data", ",", "clear", "=", "False", ")", ":", "self", ".", "assert_writeable", "(", ")", "self", ".", "_add_attributes", "(", "self", ".", "global_key", "+", "'tracking_id'", ",", "data", ",", "clear", ")", "re...	44.5	19
def _cache_update_needed(self, courseid): """ :param courseid: the (valid) course id of the course :raise InvalidNameException, CourseNotFoundException :return: True if an update of the cache is needed, False else """ if courseid not in self._cache: return Tru...	[ "def", "_cache_update_needed", "(", "self", ",", "courseid", ")", ":", "if", "courseid", "not", "in", "self", ".", "_cache", ":", "return", "True", "try", ":", "descriptor_name", "=", "self", ".", "_get_course_descriptor_path", "(", "courseid", ")", "last_upda...	44.481481	23.222222
def get_compositions_by_repository(self, repository_id): """Gets the list of ``Compositions`` associated with a ``Repository``. arg: repository_id (osid.id.Id): ``Id`` of the ``Repository`` return: (osid.repository.CompositionList) - list of related compositions raise...	[ "def", "get_compositions_by_repository", "(", "self", ",", "repository_id", ")", ":", "# Implemented from template for", "# osid.resource.ResourceBinSession.get_resources_by_bin", "mgr", "=", "self", ".", "_get_provider_manager", "(", "'REPOSITORY'", ",", "local", "=", "True"...	52.052632	21.368421
def expunge(self, instance): '''Remove instance from the :class:`Session`. Instance could be a :class:`Model` or an id. :parameter instance: a :class:`Model` or an id :rtype: the :class:`Model` removed from session or ``None`` if it was not in the session. ''' instance = self.pop(instan...	[ "def", "expunge", "(", "self", ",", "instance", ")", ":", "instance", "=", "self", ".", "pop", "(", "instance", ")", "instance", ".", "session", "=", "None", "return", "instance" ]	33.727273	18.636364
def get_user(email, password, args, *kwargs): """Get user for grant type password. Needed for grant type 'password'. Note, grant type password is by default disabled. :param email: User email. :param password: Password. :returns: The user instance or ``None``. """ user = datastore.fi...	[ "def", "get_user", "(", "email", ",", "password", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "user", "=", "datastore", ".", "find_user", "(", "email", "=", "email", ")", "if", "user", "and", "user", ".", "active", "and", "verify_password", ...	32.461538	17.923077
def path_trace(map_projection, pts, closed=False, meta_data=None): ''' path_trace(proj, points) yields a path-trace object that represents the given path of points on the given map projection proj. The following options may be given: * closed (default: False) specifies whether the points fo...	[ "def", "path_trace", "(", "map_projection", ",", "pts", ",", "closed", "=", "False", ",", "meta_data", "=", "None", ")", ":", "return", "PathTrace", "(", "map_projection", ",", "pts", ",", "closed", "=", "closed", ",", "meta_data", "=", "meta_data", ")" ]	54.692308	35
def get_data_checksum(proc_input, proc_slug, proc_version): """Compute checksum of processor inputs, name and version.""" checksum = hashlib.sha256() checksum.update(json.dumps(proc_input, sort_keys=True).encode('utf-8')) checksum.update(proc_slug.encode('utf-8')) checksum.update(str(proc_version).e...	[ "def", "get_data_checksum", "(", "proc_input", ",", "proc_slug", ",", "proc_version", ")", ":", "checksum", "=", "hashlib", ".", "sha256", "(", ")", "checksum", ".", "update", "(", "json", ".", "dumps", "(", "proc_input", ",", "sort_keys", "=", "True", ")"...	51.571429	13.142857
def like_button_js_tag(context): """ This tag will check to see if they have the FACEBOOK_LIKE_APP_ID setup correctly in the django settings, if so then it will pass the data along to the intercom_tag template to be displayed. If something isn't perfect we will return False, which will then...	[ "def", "like_button_js_tag", "(", "context", ")", ":", "if", "FACEBOOK_APP_ID", "is", "None", ":", "log", ".", "warning", "(", "\"FACEBOOK_APP_ID isn't setup correctly in your settings\"", ")", "# make sure FACEBOOK_APP_ID is setup correct and user is authenticated", "if", "FAC...	42.363636	21.681818
def to_image(self, filename='palette.png', band_width=1, length=60, max_width=0, vertical=True, alpha_channel=False): """ Creates an image from the palette. Args: filename(Optional[string]): filename of saved file. Defaults to ``palette.png`` in the ...	[ "def", "to_image", "(", "self", ",", "filename", "=", "'palette.png'", ",", "band_width", "=", "1", ",", "length", "=", "60", ",", "max_width", "=", "0", ",", "vertical", "=", "True", ",", "alpha_channel", "=", "False", ")", ":", "# max_width is approximat...	38.851064	21.829787
def dragMouseButtonLeft(self, coord, dest_coord, interval=0.5): """Drag the left mouse button without modifiers pressed. Parameters: coordinates to click on screen (tuple (x, y)) dest coordinates to drag to (tuple (x, y)) interval to send event of btn down, drag ...	[ "def", "dragMouseButtonLeft", "(", "self", ",", "coord", ",", "dest_coord", ",", "interval", "=", "0.5", ")", ":", "modFlags", "=", "0", "self", ".", "_queueMouseButton", "(", "coord", ",", "Quartz", ".", "kCGMouseButtonLeft", ",", "modFlags", ",", "dest_coo...	42.230769	20.923077
def add_data_to_attribute(scenario_id, resource_attr_id, dataset,**kwargs): """ Add data to a resource scenario outside of a network update """ user_id = kwargs.get('user_id') _check_can_edit_scenario(scenario_id, user_id) scenario_i = _get_scenario(scenario_id, user_id) try: ...	[ "def", "add_data_to_attribute", "(", "scenario_id", ",", "resource_attr_id", ",", "dataset", ",", "", "", "kwargs", ")", ":", "user_id", "=", "kwargs", ".", "get", "(", "'user_id'", ")", "_check_can_edit_scenario", "(", "scenario_id", ",", "user_id", ")", "s...	41.282051	27.692308
def write(self, buf): """Write bytes to the stream.""" underflow = self._audio_stream.write(buf) if underflow: logging.warning('SoundDeviceStream write underflow (size: %d)', len(buf)) return len(buf)	[ "def", "write", "(", "self", ",", "buf", ")", ":", "underflow", "=", "self", ".", "_audio_stream", ".", "write", "(", "buf", ")", "if", "underflow", ":", "logging", ".", "warning", "(", "'SoundDeviceStream write underflow (size: %d)'", ",", "len", "(", "buf"...	38	14.571429
def columns_dataset(self): """ Generate the columns and the whole dataset. """ data = {} words_total = {} for instance, words in self.raw_dataset.items(): words_item_total = {} for word in words: words_total.setdefault(word, 0) ...	[ "def", "columns_dataset", "(", "self", ")", ":", "data", "=", "{", "}", "words_total", "=", "{", "}", "for", "instance", ",", "words", "in", "self", ".", "raw_dataset", ".", "items", "(", ")", ":", "words_item_total", "=", "{", "}", "for", "word", "i...	34.36	12.04
def _has_y(self, kwargs): '''Returns True if y is explicitly defined in kwargs''' return (('y' in kwargs) or (self._element_y in kwargs) or (self._type == 3 and self._element_1my in kwargs))	[ "def", "_has_y", "(", "self", ",", "kwargs", ")", ":", "return", "(", "(", "'y'", "in", "kwargs", ")", "or", "(", "self", ".", "_element_y", "in", "kwargs", ")", "or", "(", "self", ".", "_type", "==", "3", "and", "self", ".", "_element_1my", "in", ...	54.75	22.25
def get_status(self, response, finished=False): """Given the stdout from the command returned by :meth:`cmd_status`, return one of the status code defined in :mod:`clusterjob.status`""" status_pos = 0 for line in response.split("\n"): if line.startswith('JOBID'): ...	[ "def", "get_status", "(", "self", ",", "response", ",", "finished", "=", "False", ")", ":", "status_pos", "=", "0", "for", "line", "in", "response", ".", "split", "(", "\"\\n\"", ")", ":", "if", "line", ".", "startswith", "(", "'JOBID'", ")", ":", "t...	41.933333	10.066667
def iterative_encoder_decoder(encoder_input, encoder_self_attention_bias, encoder_decoder_attention_bias, query, hparams): """Iterative encoder decoder.""" for _ in range(hparams.num_rec_steps): ...	[ "def", "iterative_encoder_decoder", "(", "encoder_input", ",", "encoder_self_attention_bias", ",", "encoder_decoder_attention_bias", ",", "query", ",", "hparams", ")", ":", "for", "_", "in", "range", "(", "hparams", ".", "num_rec_steps", ")", ":", "with", "tf", "....	29.88	15.16
def get_events(**kwargs): """ Return a list of events matching the passed filter. Supported kwargs are listed at http://knowledge25.collegenet.com/display/WSW/events.xml """ url = "/r25ws/servlet/wrd/run/events.xml" if len(kwargs): url += "?%s" % urlencode(kwargs) return events_...	[ "def", "get_events", "(", "", "", "kwargs", ")", ":", "url", "=", "\"/r25ws/servlet/wrd/run/events.xml\"", "if", "len", "(", "kwargs", ")", ":", "url", "+=", "\"?%s\"", "%", "urlencode", "(", "kwargs", ")", "return", "events_from_xml", "(", "get_resource", ...	30.636364	11.545455
def kind(self): '''Returns a class representing the 'kind' of optic.''' optics = [ Equality, Isomorphism, Prism, Review, Lens, Traversal, Getter, Setter, Fold, ] for optic in optic...	[ "def", "kind", "(", "self", ")", ":", "optics", "=", "[", "Equality", ",", "Isomorphism", ",", "Prism", ",", "Review", ",", "Lens", ",", "Traversal", ",", "Getter", ",", "Setter", ",", "Fold", ",", "]", "for", "optic", "in", "optics", ":", "if", "s...	23.3125	19.5625
def parse_ctuple(s,length=2): '''parse a string of acceptable colors into matplotlib, that is, either strings, or three tuples of rgb. Don't quote strings. ''' if parse_utuple(s, colrx_s, length=length) is None: raise ValueError("{} is not a valid color tuple.".format(s)); #quote strings ...	[ "def", "parse_ctuple", "(", "s", ",", "length", "=", "2", ")", ":", "if", "parse_utuple", "(", "s", ",", "colrx_s", ",", "length", "=", "length", ")", "is", "None", ":", "raise", "ValueError", "(", "\"{} is not a valid color tuple.\"", ".", "format", "(", ...	40.777778	21.222222
def invoke_with_usage (self, args, **kwargs): """Invoke the command with standardized usage-help processing. Same calling convention as `Command.invoke()`. """ argv0 = kwargs['argv0'] usage = self._usage (argv0) argv = [argv0] + args uina = 'long' if self.help_if...	[ "def", "invoke_with_usage", "(", "self", ",", "args", ",", "", "", "kwargs", ")", ":", "argv0", "=", "kwargs", "[", "'argv0'", "]", "usage", "=", "self", ".", "_usage", "(", "argv0", ")", "argv", "=", "[", "argv0", "]", "+", "args", "uina", "=", ...	34.266667	12.266667
def mvarica(x, var, cl=None, reducedim=0.99, optimize_var=False, backend=None, varfit='ensemble', random_state=None): """ Performs joint VAR model fitting and ICA source separation. This function implements the MVARICA procedure [1]_. Parameters ---------- x : array-like, shape...	[ "def", "mvarica", "(", "x", ",", "var", ",", "cl", "=", "None", ",", "reducedim", "=", "0.99", ",", "optimize_var", "=", "False", ",", "backend", "=", "None", ",", "varfit", "=", "'ensemble'", ",", "random_state", "=", "None", ")", ":", "x", "=", "...	39.507813	26.070313
def __post(self, path, **kargs): ''' Make a HTTP POST request to the Dominos UK API with the given parameters for the current session. :param string path: The API endpoint path. :params list kargs: A list of arguments. :return: A response from the Dominos UK API. ...	[ "def", "__post", "(", "self", ",", "path", ",", "", "", "kargs", ")", ":", "return", "self", ".", "__call_api", "(", "self", ".", "session", ".", "post", ",", "path", ",", "", "", "kargs", ")" ]	37.545455	18.090909
def is_output(self, stream): """Check if a stream is a sensor graph output. Return: bool """ for streamer in self.streamers: if streamer.selector.matches(stream): return True return False	[ "def", "is_output", "(", "self", ",", "stream", ")", ":", "for", "streamer", "in", "self", ".", "streamers", ":", "if", "streamer", ".", "selector", ".", "matches", "(", "stream", ")", ":", "return", "True", "return", "False" ]	21.583333	18.666667
def get_first_property(elt, key, default=None, ctx=None): """Get first property related to one input key. :param elt: first property elt. Not None methods. :param str key: property key to get. :param default: default value to return if key does not exist in elt. properties :param ctx: elt c...	[ "def", "get_first_property", "(", "elt", ",", "key", ",", "default", "=", "None", ",", "ctx", "=", "None", ")", ":", "result", "=", "default", "properties", "=", "_get_properties", "(", "elt", ",", "keys", "=", "(", "key", ",", ")", ",", "ctx", "=", ...	33.571429	22.047619
def _fetch_objects(self, key, value): """Fetch Multiple linked objects""" return self.to_cls.query.filter(**{key: value})	[ "def", "_fetch_objects", "(", "self", ",", "key", ",", "value", ")", ":", "return", "self", ".", "to_cls", ".", "query", ".", "filter", "(", "", "", "{", "key", ":", "value", "}", ")" ]	45	6
def main(): """Use pip to find pip installed packages in a given prefix.""" pip_packages = {} for package in pip.get_installed_distributions(): name = package.project_name version = package.version full_name = "{0}-{1}-pip".format(name.lower(), version) pip_packages[full_name...	[ "def", "main", "(", ")", ":", "pip_packages", "=", "{", "}", "for", "package", "in", "pip", ".", "get_installed_distributions", "(", ")", ":", "name", "=", "package", ".", "project_name", "version", "=", "package", ".", "version", "full_name", "=", "\"{0}-...	38.7	14
def process_nxml_file(fname, output_fmt='json', outbuf=None, cleanup=True, **kwargs): """Return processor with Statements extracted by reading an NXML file. Parameters ---------- fname : str The path to the NXML file to be read. output_fmt: Optional[str] The ou...	[ "def", "process_nxml_file", "(", "fname", ",", "output_fmt", "=", "'json'", ",", "outbuf", "=", "None", ",", "cleanup", "=", "True", ",", "", "", "kwargs", ")", ":", "sp", "=", "None", "out_fname", "=", "None", "try", ":", "out_fname", "=", "run_spar...	33.085714	21.914286
def append(self, report): """Append a new CSP report.""" assert report not in self.examples self.count += 1 if len(self.examples) < self.top: self.examples.append(report)	[ "def", "append", "(", "self", ",", "report", ")", ":", "assert", "report", "not", "in", "self", ".", "examples", "self", ".", "count", "+=", "1", "if", "len", "(", "self", ".", "examples", ")", "<", "self", ".", "top", ":", "self", ".", "examples",...	34.833333	5.833333
def run(self): """ Execute all current and future payloads Blocks and executes payloads until :py:meth:`stop` is called. It is an error for any orphaned payload to return or raise. """ self._logger.info('runner started: %s', self) try: with self._lock...	[ "def", "run", "(", "self", ")", ":", "self", ".", "_logger", ".", "info", "(", "'runner started: %s'", ",", "self", ")", "try", ":", "with", "self", ".", "_lock", ":", "assert", "not", "self", ".", "running", ".", "is_set", "(", ")", "and", "self", ...	34.695652	18.26087
def _load_profile_imports(self, symbol_table): """ profile_imports is a list of module names or tuples of (module_name, names to import) in the form of ('.', names) it behaces like: from . import name1, name2, name3 or similarly import .name1, .name2, .name3 i.e. "name" in names becomes...	[ "def", "_load_profile_imports", "(", "self", ",", "symbol_table", ")", ":", "results", "=", "[", "]", "if", "'profile_imports'", "not", "in", "symbol_table", ":", "return", "results", "package", "=", "self", ".", "_get_package", "(", "symbol_table", ")", "prof...	36.037736	17.509434
def chunker(ensemble_list, ncpu): """ Generate successive chunks of ensemble_list. """ # determine sublist lengths length = int(len(ensemble_list) / ncpu) # generator for i in range(0, len(ensemble_list), length): yield ensemble_list[i:i + length]	[ "def", "chunker", "(", "ensemble_list", ",", "ncpu", ")", ":", "# determine sublist lengths", "length", "=", "int", "(", "len", "(", "ensemble_list", ")", "/", "ncpu", ")", "# generator", "for", "i", "in", "range", "(", "0", ",", "len", "(", "ensemble_list...	24.454545	12.727273
def get_stock_list(self): """ 回傳日常交易的代碼與名稱 :rtype: dict .. versionadded:: 0.5.6 """ all_stock = self.all_stock industry_comps = self.industry_comps result = {} for comps_no in self.get_stock_comps_list(): if comps_no in industry_comp...	[ "def", "get_stock_list", "(", "self", ")", ":", "all_stock", "=", "self", ".", "all_stock", "industry_comps", "=", "self", ".", "industry_comps", "result", "=", "{", "}", "for", "comps_no", "in", "self", ".", "get_stock_comps_list", "(", ")", ":", "if", "c...	28.375	16.4375

async def send_script_message(self, message, context): """Handle a send_script message. See :meth:`AbstractDeviceAdapter.send_script`. """ script = message.get('script') conn_string = message.get('connection_string') client_id = context.user_data if message.get...

[ "async", "def", "send_script_message", "(", "self", ",", "message", ",", "context", ")", ":", "script", "=", "message", ".", "get", "(", "'script'", ")", "conn_string", "=", "message", ".", "get", "(", "'connection_string'", ")", "client_id", "=", "context",...

36.714286

22.357143

def get_user_config_filename(appname='notify'): """ Get user config filename. It will return operating system dependent config filename. Parameters ---------- appname : string An application name used for filename Returns ------- string A filename of user configura...

[ "def", "get_user_config_filename", "(", "appname", "=", "'notify'", ")", ":", "import", "platform", "system", "=", "platform", ".", "system", "(", ")", "if", "system", "==", "'Windows'", ":", "rootname", "=", "os", ".", "path", ".", "join", "(", "os", "....

29.851064

16.489362

def create_or_update(self, resource_group, name, container_group): """ Create a new container group :param resource_group: the name of the resource group :type resource_group: str :param name: the name of the container group :type name: str :param container_group...

[ "def", "create_or_update", "(", "self", ",", "resource_group", ",", "name", ",", "container_group", ")", ":", "self", ".", "connection", ".", "container_groups", ".", "create_or_update", "(", "resource_group", ",", "name", ",", "container_group", ")" ]

46.642857

20.5

def get_indices(self, src, ridx, mag): """ :param src: an UCERF source :param ridx: a set of rupture indices :param mag: magnitude to use to compute the integration distance :returns: array with the IDs of the sites close to the ruptures """ centroids = src.get_ce...

[ "def", "get_indices", "(", "self", ",", "src", ",", "ridx", ",", "mag", ")", ":", "centroids", "=", "src", ".", "get_centroids", "(", "ridx", ")", "mindistance", "=", "min_geodetic_distance", "(", "(", "centroids", "[", ":", ",", "0", "]", ",", "centro...

43.615385

11.923077

def list_product_releases(page_size=200, page_index=0, sort="", q=""): """ List all ProductReleases """ data = list_product_releases_raw(page_size, page_index, sort, q) if data: return utils.format_json_list(data)

[ "def", "list_product_releases", "(", "page_size", "=", "200", ",", "page_index", "=", "0", ",", "sort", "=", "\"\"", ",", "q", "=", "\"\"", ")", ":", "data", "=", "list_product_releases_raw", "(", "page_size", ",", "page_index", ",", "sort", ",", "q", ")...

33.571429

14.428571

def entry_at(cls, filepath, index): """:return: RefLogEntry at the given index :param filepath: full path to the index file from which to read the entry :param index: python list compatible index, i.e. it may be negative to specify an entry counted from the end of the list :...

[ "def", "entry_at", "(", "cls", ",", "filepath", ",", "index", ")", ":", "fp", "=", "open", "(", "filepath", ",", "'rb'", ")", "if", "index", "<", "0", ":", "return", "RefLogEntry", ".", "from_line", "(", "fp", ".", "readlines", "(", ")", "[", "inde...

37.586207

18.172414

def export_to_storage_bucket(self, bucket, namespace=None, entity_filter=None, labels=None): """ Export entities from Cloud Datastore to Cloud Storage for backup. .. note:: Keep in mind that this requests the Admin API not the Data API. .. seealso:: https://clou...

[ "def", "export_to_storage_bucket", "(", "self", ",", "bucket", ",", "namespace", "=", "None", ",", "entity_filter", "=", "None", ",", "labels", "=", "None", ")", ":", "admin_conn", "=", "self", ".", "get_conn", "(", ")", "output_uri_prefix", "=", "'gs://'", ...

35.717949

21.717949

def isreshapeable(new, old): """ Check to see if a proposed tuple of axes is a valid reshaping of the old axes by ensuring that they can be factored. Parameters ---------- new : tuple tuple of proposed axes old : tuple tuple of old axes """ new, old = tupleize(new)...

[ "def", "isreshapeable", "(", "new", ",", "old", ")", ":", "new", ",", "old", "=", "tupleize", "(", "new", ")", ",", "tupleize", "(", "old", ")", "if", "not", "prod", "(", "new", ")", "==", "prod", "(", "old", ")", ":", "raise", "ValueError", "(",...

23.722222

21.277778

def _get_computer_object(): ''' A helper function to get the object for the local machine Returns: object: Returns the computer object for the local machine ''' with salt.utils.winapi.Com(): nt = win32com.client.Dispatch('AdsNameSpaces') return nt.GetObject('', 'WinNT://.,comput...

[ "def", "_get_computer_object", "(", ")", ":", "with", "salt", ".", "utils", ".", "winapi", ".", "Com", "(", ")", ":", "nt", "=", "win32com", ".", "client", ".", "Dispatch", "(", "'AdsNameSpaces'", ")", "return", "nt", ".", "GetObject", "(", "''", ",", ...

31.5

22.3

def authenticate(url, account, key, by='name', expires=0, timestamp=None, timeout=None, request_type="xml", admin_auth=False, use_password=False, raise_on_error=False): """ Authenticate to the Zimbra server :param url: URL of Zimbra SOAP service :param account: The accoun...

[ "def", "authenticate", "(", "url", ",", "account", ",", "key", ",", "by", "=", "'name'", ",", "expires", "=", "0", ",", "timestamp", "=", "None", ",", "timeout", "=", "None", ",", "request_type", "=", "\"xml\"", ",", "admin_auth", "=", "False", ",", ...

26.028571

23.933333

def normalize_job_id(job_id): """ Convert a value to a job id. :param job_id: Value to convert. :type job_id: int, str :return: The job id. :rtype: :py:class:`uuid.UUID` """ if not isinstance(job_id, uuid.UUID): job_id = uuid.UUID(job_id) return job_id

[ "def", "normalize_job_id", "(", "job_id", ")", ":", "if", "not", "isinstance", "(", "job_id", ",", "uuid", ".", "UUID", ")", ":", "job_id", "=", "uuid", ".", "UUID", "(", "job_id", ")", "return", "job_id" ]

21.083333

12.916667

def operations(self): """Instance depends on the API version: * 2017-03-01: :class:`Operations<azure.mgmt.containerregistry.v2017_03_01.operations.Operations>` * 2017-10-01: :class:`Operations<azure.mgmt.containerregistry.v2017_10_01.operations.Operations>` * 2018-02-01-preview...

[ "def", "operations", "(", "self", ")", ":", "api_version", "=", "self", ".", "_get_api_version", "(", "'operations'", ")", "if", "api_version", "==", "'2017-03-01'", ":", "from", ".", "v2017_03_01", ".", "operations", "import", "Operations", "as", "OperationClas...

65.8

35.6

def row_cells(self, row_idx): """ Sequence of cells in the row at *row_idx* in this table. """ column_count = self._column_count start = row_idx * column_count end = start + column_count return self._cells[start:end]

[ "def", "row_cells", "(", "self", ",", "row_idx", ")", ":", "column_count", "=", "self", ".", "_column_count", "start", "=", "row_idx", "*", "column_count", "end", "=", "start", "+", "column_count", "return", "self", ".", "_cells", "[", "start", ":", "end",...

33.125

5.875

def angle_iter(self, g_nums, ats_1, ats_2, ats_3, invalid_error=False): """ Iterator over selected atomic angles. Angles are in degrees as with :meth:`angle_single`. See `above <toc-generators_>`_ for more information on calling options. Parameters ---------- g...

[ "def", "angle_iter", "(", "self", ",", "g_nums", ",", "ats_1", ",", "ats_2", ",", "ats_3", ",", "invalid_error", "=", "False", ")", ":", "# Suitability of ats_n indices will be checked within the", "# self.angle_single() calls and thus no check is needed here.", "# Import th...

30.464286

21.178571

def name(self): """ Returns name of the digest """ if not hasattr(self, 'digest_name'): self.digest_name = Oid(libcrypto.EVP_MD_type(self.digest) ).longname() return self.digest_name

[ "def", "name", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "'digest_name'", ")", ":", "self", ".", "digest_name", "=", "Oid", "(", "libcrypto", ".", "EVP_MD_type", "(", "self", ".", "digest", ")", ")", ".", "longname", "(", ")", ...

41.166667

12.166667

def _ping_loop(self): """This background task sends a PING to the server at the requested interval. """ self.pong_received = True self.ping_loop_event.clear() while self.state == 'connected': if not self.pong_received: self.logger.info( ...

[ "def", "_ping_loop", "(", "self", ")", ":", "self", ".", "pong_received", "=", "True", "self", ".", "ping_loop_event", ".", "clear", "(", ")", "while", "self", ".", "state", "==", "'connected'", ":", "if", "not", "self", ".", "pong_received", ":", "self"...

38.666667

10

def cmvnw(vec, win_size=301, variance_normalization=False): """ This function is aimed to perform local cepstral mean and variance normalization on a sliding window. The code assumes that there is one observation per row. Args: vec (array): input feature matrix (size:(num_observatio...

[ "def", "cmvnw", "(", "vec", ",", "win_size", "=", "301", ",", "variance_normalization", "=", "False", ")", ":", "# Get the shapes", "eps", "=", "2", "**", "-", "30", "rows", ",", "cols", "=", "vec", ".", "shape", "# Windows size must be odd.", "assert", "i...

35.925926

19.407407

def copy(self): """Copy a reaction The referenced metabolites and genes are also copied. """ # no references to model when copying model = self._model self._model = None for i in self._metabolites: i._model = None for i in self._genes: ...

[ "def", "copy", "(", "self", ")", ":", "# no references to model when copying", "model", "=", "self", ".", "_model", "self", ".", "_model", "=", "None", "for", "i", "in", "self", ".", "_metabolites", ":", "i", ".", "_model", "=", "None", "for", "i", "in",...

27.136364

13.272727

def delete(self, network): """ Wraps the standard delete() method to catch expected exceptions and raise the appropriate pyrax exceptions. """ try: return super(CloudNetworkClient, self).delete(network) except exc.Forbidden as e: # Network is in us...

[ "def", "delete", "(", "self", ",", "network", ")", ":", "try", ":", "return", "super", "(", "CloudNetworkClient", ",", "self", ")", ".", "delete", "(", "network", ")", "except", "exc", ".", "Forbidden", "as", "e", ":", "# Network is in use", "raise", "ex...

39.4

16.6

def assign_power_curve(self, weather_df): r""" Calculates the power curve of the wind turbine cluster. The power curve is aggregated from the wind farms' and wind turbines' power curves by using :func:`power_plant.assign_power_curve`. Depending on the parameters of the WindTurbi...

[ "def", "assign_power_curve", "(", "self", ",", "weather_df", ")", ":", "# Set turbulence intensity for assigning power curve", "turbulence_intensity", "=", "(", "weather_df", "[", "'turbulence_intensity'", "]", ".", "values", ".", "mean", "(", ")", "if", "'turbulence_in...

46.892308

23.092308

def _show_message(self, text): """Show message on splash screen.""" self.splash.showMessage(text, Qt.AlignBottom | Qt.AlignCenter | Qt.AlignAbsolute, QColor(Qt.white))

[ "def", "_show_message", "(", "self", ",", "text", ")", ":", "self", ".", "splash", ".", "showMessage", "(", "text", ",", "Qt", ".", "AlignBottom", "|", "Qt", ".", "AlignCenter", "|", "Qt", ".", "AlignAbsolute", ",", "QColor", "(", "Qt", ".", "white", ...

53.75

17

def split_args_list(tokens, loc): """Splits function definition arguments.""" req_args, def_args, star_arg, kwd_args, dubstar_arg = [], [], None, [], None pos = 0 for arg in tokens: if len(arg) == 1: if arg[0] == "*": # star sep (pos = 3) if pos >= 3: ...

[ "def", "split_args_list", "(", "tokens", ",", "loc", ")", ":", "req_args", ",", "def_args", ",", "star_arg", ",", "kwd_args", ",", "dubstar_arg", "=", "[", "]", ",", "[", "]", ",", "None", ",", "[", "]", ",", "None", "pos", "=", "0", "for", "arg", ...

43.302326

21.139535

def main(args=None): """Start application.""" Config.options, Config.args = parse(args) logger() if Config.options.aeidon or Config.options.fix: start_aeidon() else: start_srt() if Config.options.fix: sys.exit(0) if not Config.results: basenames = [os.pat...

[ "def", "main", "(", "args", "=", "None", ")", ":", "Config", ".", "options", ",", "Config", ".", "args", "=", "parse", "(", "args", ")", "logger", "(", ")", "if", "Config", ".", "options", ".", "aeidon", "or", "Config", ".", "options", ".", "fix", ...

24.434783

23.478261

def rouge_l(hypotheses, references): """ Calculate ROUGE-L F1, precision, recall scores """ rouge_l = [ rouge_l_sentence_level([hyp], [ref]) for hyp, ref in zip(hypotheses, references) ] rouge_l_f, _, _ = map(np.mean, zip(*rouge_l)) return rouge_l_f

[ "def", "rouge_l", "(", "hypotheses", ",", "references", ")", ":", "rouge_l", "=", "[", "rouge_l_sentence_level", "(", "[", "hyp", "]", ",", "[", "ref", "]", ")", "for", "hyp", ",", "ref", "in", "zip", "(", "hypotheses", ",", "references", ")", "]", "...

28.4

11.8

def resolve(self, *keys): ''' Returns resolved instances for given provider keys. If only one positional argument is given, only one is returned. :param keys: Provider keys :type keys: tuple :return: Resolved instance(s); if only one key given, otherwise list of them. ...

[ "def", "resolve", "(", "self", ",", "*", "keys", ")", ":", "instances", "=", "list", "(", "self", ".", "iresolve", "(", "*", "keys", ")", ")", "if", "len", "(", "keys", ")", "==", "1", ":", "return", "instances", "[", "0", "]", "return", "instanc...

31.866667

21.6

def send_file(self, path, contents, shutit_pexpect_child=None, truncate=False, note=None, user=None, echo=False, group=None, loglevel=logging.INFO, encoding=None): """S...

[ "def", "send_file", "(", "self", ",", "path", ",", "contents", ",", "shutit_pexpect_child", "=", "None", ",", "truncate", "=", "False", ",", "note", "=", "None", ",", "user", "=", "None", ",", "echo", "=", "False", ",", "group", "=", "None", ",", "lo...

42.027778

17.777778

def plots_html_page(): """Generate general statistics Output is an html page, rendered to 'plots_html_page.html' in the output directory. """ # page template template = jenv.get_template("plots_html_page.html") # container for template context context = dict() # a database client/sess...

[ "def", "plots_html_page", "(", ")", ":", "# page template", "template", "=", "jenv", ".", "get_template", "(", "\"plots_html_page.html\"", ")", "# container for template context", "context", "=", "dict", "(", ")", "# a database client/session to run queries in", "cl", "="...

34.446429

23.294643

def parse_roles(self, fetched_role, params): """ Parse a single IAM role and fetch additional data """ role = {} role['instances_count'] = 'N/A' # When resuming upon throttling error, skip if already fetched if fetched_role['RoleName'] in self.roles: r...

[ "def", "parse_roles", "(", "self", ",", "fetched_role", ",", "params", ")", ":", "role", "=", "{", "}", "role", "[", "'instances_count'", "]", "=", "'N/A'", "# When resuming upon throttling error, skip if already fetched", "if", "fetched_role", "[", "'RoleName'", "]...

51.242424

20.636364

def authenticate(self, is_global=True): """Authenticates against the API server. :param is_global: If True, authenticate globally. Local login if False. :raise AuthenticationException: Raises if there was an issue with authenticating or logging in. :raise MyGeotabException: Raises when ...

[ "def", "authenticate", "(", "self", ",", "is_global", "=", "True", ")", ":", "auth_data", "=", "dict", "(", "database", "=", "self", ".", "credentials", ".", "database", ",", "userName", "=", "self", ".", "credentials", ".", "username", ",", "password", ...

55.129032

23.935484

def clr(args): """ %prog blastfile fastafiles Calculate the vector clear range file based BLAST to the vectors. """ p = OptionParser(clr.__doc__) opts, args = p.parse_args(args) if len(args) < 2: sys.exit(not p.print_help()) blastfile = args[0] fastafiles = args[1:] s...

[ "def", "clr", "(", "args", ")", ":", "p", "=", "OptionParser", "(", "clr", ".", "__doc__", ")", "opts", ",", "args", "=", "p", ".", "parse_args", "(", "args", ")", "if", "len", "(", "args", ")", "<", "2", ":", "sys", ".", "exit", "(", "not", ...

24.075

19.075

def FloatField(default=NOTHING, required=True, repr=True, cmp=True, key=None): """ Create new float field on a model. :param default: any float value :param bool required: whether or not the object is invalid if not provided. :param bool repr: include this field should appear in obje...

[ "def", "FloatField", "(", "default", "=", "NOTHING", ",", "required", "=", "True", ",", "repr", "=", "True", ",", "cmp", "=", "True", ",", "key", "=", "None", ")", ":", "default", "=", "_init_fields", ".", "init_default", "(", "required", ",", "default...

47.75

19.625

def as_compatible_data(data, fastpath=False): """Prepare and wrap data to put in a Variable. - If data does not have the necessary attributes, convert it to ndarray. - If data has dtype=datetime64, ensure that it has ns precision. If it's a pandas.Timestamp, convert it to datetime64. - If data is...

[ "def", "as_compatible_data", "(", "data", ",", "fastpath", "=", "False", ")", ":", "if", "fastpath", "and", "getattr", "(", "data", ",", "'ndim'", ",", "0", ")", ">", "0", ":", "# can't use fastpath (yet) for scalars", "return", "_maybe_wrap_data", "(", "data"...

33.654545

17.236364

def on_close(self): ''' Called when client closes this connection. Cleanup is done here. ''' if self.id in self.funcserver.websocks: self.funcserver.websocks[self.id] = None ioloop = tornado.ioloop.IOLoop.instance() ioloop.add_callback(lambda:...

[ "def", "on_close", "(", "self", ")", ":", "if", "self", ".", "id", "in", "self", ".", "funcserver", ".", "websocks", ":", "self", ".", "funcserver", ".", "websocks", "[", "self", ".", "id", "]", "=", "None", "ioloop", "=", "tornado", ".", "ioloop", ...

37.3125

22.4375

def _translate_str(self, oprnd1, oprnd2, oprnd3): """Return a formula representation of a STR instruction. """ assert oprnd1.size and oprnd3.size op1_var = self._translate_src_oprnd(oprnd1) op3_var, op3_var_constrs = self._translate_dst_oprnd(oprnd3) if oprnd3.size > op...

[ "def", "_translate_str", "(", "self", ",", "oprnd1", ",", "oprnd2", ",", "oprnd3", ")", ":", "assert", "oprnd1", ".", "size", "and", "oprnd3", ".", "size", "op1_var", "=", "self", ".", "_translate_src_oprnd", "(", "oprnd1", ")", "op3_var", ",", "op3_var_co...

36.6875

17.375

def _new_stream(self, idx): '''Randomly select and create a new stream. Parameters ---------- idx : int, [0:n_streams - 1] The stream index to replace ''' # Don't activate the stream if the weight is 0 or None if self.stream_weights_[idx]: ...

[ "def", "_new_stream", "(", "self", ",", "idx", ")", ":", "# Don't activate the stream if the weight is 0 or None", "if", "self", ".", "stream_weights_", "[", "idx", "]", ":", "self", ".", "streams_", "[", "idx", "]", "=", "self", ".", "streamers", "[", "idx", ...

30.4375

16.4375

def glossary_path(cls, project, location, glossary): """Return a fully-qualified glossary string.""" return google.api_core.path_template.expand( "projects/{project}/locations/{location}/glossaries/{glossary}", project=project, location=location, glossary=...

[ "def", "glossary_path", "(", "cls", ",", "project", ",", "location", ",", "glossary", ")", ":", "return", "google", ".", "api_core", ".", "path_template", ".", "expand", "(", "\"projects/{project}/locations/{location}/glossaries/{glossary}\"", ",", "project", "=", "...

41.5

15.375

def parse(readDataInstance): """ Returns a new L{NetMetaDataTableHeader} object. @type readDataInstance: L{ReadData} @param readDataInstance: A L{ReadData} object with data to be parsed as a L{NetMetaDataTableHeader} object. @rtype: L{NetMetaDataTableHeader} ...

[ "def", "parse", "(", "readDataInstance", ")", ":", "th", "=", "NetMetaDataTableHeader", "(", ")", "th", ".", "reserved_1", ".", "value", "=", "readDataInstance", ".", "readDword", "(", ")", "th", ".", "majorVersion", ".", "value", "=", "readDataInstance", "....

40.380952

19.714286

def uf_pelo_codigo(codigo_ibge): """Retorna a UF para o código do IBGE informado.""" idx = [i for s, i, n, r in UNIDADES_FEDERACAO].index(codigo_ibge) return UNIDADES_FEDERACAO[idx][_UF_SIGLA]

[ "def", "uf_pelo_codigo", "(", "codigo_ibge", ")", ":", "idx", "=", "[", "i", "for", "s", ",", "i", ",", "n", ",", "r", "in", "UNIDADES_FEDERACAO", "]", ".", "index", "(", "codigo_ibge", ")", "return", "UNIDADES_FEDERACAO", "[", "idx", "]", "[", "_UF_SI...

50.25

10.5

def ListMigrationsToProcess(migrations_root, current_migration_number ): """Lists filenames of migrations with numbers bigger than a given one.""" migrations = [] for m in os.listdir(migrations_root): if (current_migration_number is None or _Migra...

[ "def", "ListMigrationsToProcess", "(", "migrations_root", ",", "current_migration_number", ")", ":", "migrations", "=", "[", "]", "for", "m", "in", "os", ".", "listdir", "(", "migrations_root", ")", ":", "if", "(", "current_migration_number", "is", "None", "or",...

40.363636

13.363636

def p_created_1(self, p): """created : CREATED DATE""" try: if six.PY2: value = p[2].decode(encoding='utf-8') else: value = p[2] self.builder.set_created_date(self.document, value) except CardinalityError: self.more_...

[ "def", "p_created_1", "(", "self", ",", "p", ")", ":", "try", ":", "if", "six", ".", "PY2", ":", "value", "=", "p", "[", "2", "]", ".", "decode", "(", "encoding", "=", "'utf-8'", ")", "else", ":", "value", "=", "p", "[", "2", "]", "self", "."...

34.9

15.9

def format_string(format, *cols): """ Formats the arguments in printf-style and returns the result as a string column. :param col: the column name of the numeric value to be formatted :param d: the N decimal places >>> df = spark.createDataFrame([(5, "hello")], ['a', 'b']) >>> df.select(format...

[ "def", "format_string", "(", "format", ",", "*", "cols", ")", ":", "sc", "=", "SparkContext", ".", "_active_spark_context", "return", "Column", "(", "sc", ".", "_jvm", ".", "functions", ".", "format_string", "(", "format", ",", "_to_seq", "(", "sc", ",", ...

40.692308

22.692308

def resource_from_etree(self, etree, resource_class): """Construct a Resource from an etree. Parameters: etree - the etree to parse resource_class - class of Resource object to create The parsing is properly namespace aware but we search just for the elements wanted a...

[ "def", "resource_from_etree", "(", "self", ",", "etree", ",", "resource_class", ")", ":", "loc_elements", "=", "etree", ".", "findall", "(", "'{'", "+", "SITEMAP_NS", "+", "\"}loc\"", ")", "if", "(", "len", "(", "loc_elements", ")", ">", "1", ")", ":", ...

48.079365

17.587302

def get_size( self, bucket: str, key: str ) -> int: """ Retrieves the filesize :param bucket: the bucket the object resides in. :param key: the key of the object for which size is being retrieved. :return: integer equal to filesize in bytes...

[ "def", "get_size", "(", "self", ",", "bucket", ":", "str", ",", "key", ":", "str", ")", "->", "int", ":", "blob_obj", "=", "self", ".", "_get_blob_obj", "(", "bucket", ",", "key", ")", "return", "blob_obj", ".", "size" ]

30.769231

16

def remove_filter_set(self, filter_name): """ Remove filter set by name :param filter_name: str """ if filter_name in self._filter_sets: del self._filter_sets[filter_name] else: raise ValueError('Unknown filter set name.')

[ "def", "remove_filter_set", "(", "self", ",", "filter_name", ")", ":", "if", "filter_name", "in", "self", ".", "_filter_sets", ":", "del", "self", ".", "_filter_sets", "[", "filter_name", "]", "else", ":", "raise", "ValueError", "(", "'Unknown filter set name.'"...

31.777778

7.777778

def write_array(self, outfile, pixels): """ Write an array that holds all the image values as a PNG file on the output file. See also :meth:`write` method. """ if self.interlace: if type(pixels) != array: # Coerce to array type ...

[ "def", "write_array", "(", "self", ",", "outfile", ",", "pixels", ")", ":", "if", "self", ".", "interlace", ":", "if", "type", "(", "pixels", ")", "!=", "array", ":", "# Coerce to array type", "fmt", "=", "'BH'", "[", "self", ".", "bitdepth", ">", "8",...

36.133333

11.866667

def fmtinfo(value): """Returns (typetag, text, is_imprecise). Unlike other functions that operate on measurements, this also operates on bools, ints, and strings. """ if value is None: raise ValueError('cannot format None!') if isinstance(value, text_type): return '', value, False ...

[ "def", "fmtinfo", "(", "value", ")", ":", "if", "value", "is", "None", ":", "raise", "ValueError", "(", "'cannot format None!'", ")", "if", "isinstance", "(", "value", ",", "text_type", ")", ":", "return", "''", ",", "value", ",", "False", "if", "isinsta...

30.407407

19.222222

def dnsdumpster(domain, output_dir): """Query dnsdumpster.com.""" response = requests.Session().get('https://dnsdumpster.com/').text csrf_token = re.search( r"name='csrfmiddlewaretoken' value='(.*?)'", response).group(1) cookies = {'csrftoken': csrf_token} headers = {'Referer': 'https://dns...

[ "def", "dnsdumpster", "(", "domain", ",", "output_dir", ")", ":", "response", "=", "requests", ".", "Session", "(", ")", ".", "get", "(", "'https://dnsdumpster.com/'", ")", ".", "text", "csrf_token", "=", "re", ".", "search", "(", "r\"name='csrfmiddlewaretoken...

45.125

19.75

def load_febrl4(return_links=False): """Load the FEBRL 4 datasets. The Freely Extensible Biomedical Record Linkage (Febrl) package is distributed with a dataset generator and four datasets generated with the generator. This function returns the fourth Febrl dataset as a :class:`pandas.DataFrame`. ...

[ "def", "load_febrl4", "(", "return_links", "=", "False", ")", ":", "df_a", "=", "_febrl_load_data", "(", "'dataset4a.csv'", ")", "df_b", "=", "_febrl_load_data", "(", "'dataset4b.csv'", ")", "if", "return_links", ":", "links", "=", "pandas", ".", "MultiIndex", ...

35.756098

22.195122

def compare(expr, value, regex_expr=False): """ Compares an string or regular expression againast a given value. Arguments: expr (str|regex): string or regular expression value to compare. value (str): value to compare against to. regex_expr (bool, optional): enables string based re...

[ "def", "compare", "(", "expr", ",", "value", ",", "regex_expr", "=", "False", ")", ":", "# Strict equality comparison", "if", "expr", "==", "value", ":", "return", "True", "# Infer negate expression to match, if needed", "negate", "=", "False", "if", "isinstance", ...

25.714286

21.085714

def rvir(self,H=70.,Om=0.3,overdens=200.,wrtcrit=False,ro=None,vo=None, use_physical=False): # use_physical necessary bc of pop=False, does nothing inside """ NAME: rvir PURPOSE: calculate the virial radius for this density distribution INPUT: ...

[ "def", "rvir", "(", "self", ",", "H", "=", "70.", ",", "Om", "=", "0.3", ",", "overdens", "=", "200.", ",", "wrtcrit", "=", "False", ",", "ro", "=", "None", ",", "vo", "=", "None", ",", "use_physical", "=", "False", ")", ":", "# use_physical necess...

32.222222

29.555556

def resample(self, data, input_rate): """ Microphone may not support our native processing sampling rate, so resample from input_rate to RATE_PROCESS here for webrtcvad and deepspeech Args: data (binary): Input audio stream input_rate (int): Input audio r...

[ "def", "resample", "(", "self", ",", "data", ",", "input_rate", ")", ":", "data16", "=", "np", ".", "fromstring", "(", "string", "=", "data", ",", "dtype", "=", "np", ".", "int16", ")", "resample_size", "=", "int", "(", "len", "(", "data16", ")", "...

41.866667

18.533333

def njsd(network, ref_gene_expression_dict, query_gene_expression_dict, gene_set): """Calculate Jensen-Shannon divergence between query and reference gene expression profile. """ gene_jsd_dict = dict() reference_genes = ref_gene_expression_dict.keys() assert len(reference_genes) != 'Reference g...

[ "def", "njsd", "(", "network", ",", "ref_gene_expression_dict", ",", "query_gene_expression_dict", ",", "gene_set", ")", ":", "gene_jsd_dict", "=", "dict", "(", ")", "reference_genes", "=", "ref_gene_expression_dict", ".", "keys", "(", ")", "assert", "len", "(", ...

45.111111

29.407407

def copy_figure_to_clipboard(figure='gcf'): """ Copies the specified figure to the system clipboard. Specifying 'gcf' will use the current figure. """ try: import pyqtgraph as _p # Get the current figure if necessary if figure is 'gcf': figure = _s.pylab.gcf(...

[ "def", "copy_figure_to_clipboard", "(", "figure", "=", "'gcf'", ")", ":", "try", ":", "import", "pyqtgraph", "as", "_p", "# Get the current figure if necessary ", "if", "figure", "is", "'gcf'", ":", "figure", "=", "_s", ".", "pylab", ".", "gcf", "(", ")...

37.285714

20.809524

def parse_set(string): """Parse set from comma separated string.""" string = string.strip() if string: return set(string.split(",")) else: return set()

[ "def", "parse_set", "(", "string", ")", ":", "string", "=", "string", ".", "strip", "(", ")", "if", "string", ":", "return", "set", "(", "string", ".", "split", "(", "\",\"", ")", ")", "else", ":", "return", "set", "(", ")" ]

25.285714

15.857143

def not_query(expression): """Apply logical not operator to expression.""" compiled_expression = compile_query(expression) def _not(index, expression=compiled_expression): """Return store key for documents that satisfy expression.""" all_keys = index.get_all_keys() returned_keys = e...

[ "def", "not_query", "(", "expression", ")", ":", "compiled_expression", "=", "compile_query", "(", "expression", ")", "def", "_not", "(", "index", ",", "expression", "=", "compiled_expression", ")", ":", "\"\"\"Return store key for documents that satisfy expression.\"\"\"...

37.454545

15.636364

def check_assumptions( self, training_df, advice=True, show_plots=False, p_value_threshold=0.01, plot_n_bootstraps=10 ): """ Use this function to test the proportional hazards assumption. See usage example at https://lifelines.readthedocs.io/en/latest/jupyter_notebooks/Proportional%2...

[ "def", "check_assumptions", "(", "self", ",", "training_df", ",", "advice", "=", "True", ",", "show_plots", "=", "False", ",", "p_value_threshold", "=", "0.01", ",", "plot_n_bootstraps", "=", "10", ")", ":", "if", "not", "training_df", ".", "index", ".", "...

45.990148

27.152709

def run(self, default=None): """Parse the command line arguments. default: Name of default command to run if no arguments are passed. """ parent, *sys_args = sys.argv self.parent = Path(parent).stem cmd_name = default if sys_args: cmd_nam...

[ "def", "run", "(", "self", ",", "default", "=", "None", ")", ":", "parent", ",", "", "*", "sys_args", "=", "sys", ".", "argv", "self", ".", "parent", "=", "Path", "(", "parent", ")", ".", "stem", "cmd_name", "=", "default", "if", "sys_args", ":", ...

28.76

17.44

def prepare_communication (self): """ Prepare the buffers to be used for later communications """ RectPartitioner.prepare_communication (self) if self.lower_neighbors[0]>=0: self.in_lower_buffers = [zeros(1, float)] self.out_lower_buffers...

[ "def", "prepare_communication", "(", "self", ")", ":", "RectPartitioner", ".", "prepare_communication", "(", "self", ")", "if", "self", ".", "lower_neighbors", "[", "0", "]", ">=", "0", ":", "self", ".", "in_lower_buffers", "=", "[", "zeros", "(", "1", ","...

36.615385

12.615385

def _xml(self): """ Returns the color information as XML. The XML has the following structure: <colors query=""> <color name="" weight="" /> <rgb r="" g="" b="" /> <shade name="" weight="" /> </color> </colors> Not...

[ "def", "_xml", "(", "self", ")", ":", "grouped", "=", "self", ".", "_weight_by_hue", "(", ")", "xml", "=", "\"<colors query=\\\"\"", "+", "self", ".", "name", "+", "\"\\\" tags=\\\"\"", "+", "\", \"", ".", "join", "(", "self", ".", "tags", ")", "+", "\...

42.818182

22.818182

def delete(name): '''Delete the given virtual folder. This operation is irreversible! NAME: Name of a virtual folder. ''' with Session() as session: try: session.VFolder(name).delete() print_done('Deleted.') except Exception as e: print_error(e) ...

[ "def", "delete", "(", "name", ")", ":", "with", "Session", "(", ")", "as", "session", ":", "try", ":", "session", ".", "VFolder", "(", "name", ")", ".", "delete", "(", ")", "print_done", "(", "'Deleted.'", ")", "except", "Exception", "as", "e", ":", ...

27.25

18.25

def get_text(self, deserialized_json): """Recursively get text from subcomponents of a deserialized json. To enforce the same order on the documents, make sure to read keys of deserialized_json in a consistent (alphabetical) order. """ if isinstance(deserialized_json, dict): ...

[ "def", "get_text", "(", "self", ",", "deserialized_json", ")", ":", "if", "isinstance", "(", "deserialized_json", ",", "dict", ")", ":", "result", "=", "''", "for", "key", "in", "sorted", "(", "deserialized_json", ")", ":", "result", "+=", "self", ".", "...

37.761905

16.047619

def load_batch_x(path_batch, flatten = False, time_major = False): """ Loads a batch of input features given a list of paths to numpy arrays in that batch.""" utterances = [np.load(str(path)) for path in path_batch] utter_lens = [utterance.shape[0] for utterance in utt...

[ "def", "load_batch_x", "(", "path_batch", ",", "flatten", "=", "False", ",", "time_major", "=", "False", ")", ":", "utterances", "=", "[", "np", ".", "load", "(", "str", "(", "path", ")", ")", "for", "path", "in", "path_batch", "]", "utter_lens", "=", ...

39

12.176471

def interm_size(self)-> Sequence[Sequence[int]]: '''The size of each intermediate fluent in canonical order. Returns: Sequence[Sequence[int]]: A tuple of tuple of integers representing the shape and size of each fluent. ''' fluents = self.domain.intermediate_flue...

[ "def", "interm_size", "(", "self", ")", "->", "Sequence", "[", "Sequence", "[", "int", "]", "]", ":", "fluents", "=", "self", ".", "domain", ".", "intermediate_fluents", "ordering", "=", "self", ".", "domain", ".", "interm_fluent_ordering", "return", "self",...

42

20.6

def distance2_to_line(pt, l0, l1): '''The perpendicular distance squared from a point to a line pt - point in question l0 - one point on the line l1 - another point on the line ''' pt = np.atleast_1d(pt) l0 = np.atleast_1d(l0) l1 = np.atleast_1d(l1) reshape = pt.ndim == 1 if...

[ "def", "distance2_to_line", "(", "pt", ",", "l0", ",", "l1", ")", ":", "pt", "=", "np", ".", "atleast_1d", "(", "pt", ")", "l0", "=", "np", ".", "atleast_1d", "(", "l0", ")", "l1", "=", "np", ".", "atleast_1d", "(", "l1", ")", "reshape", "=", "...

31.052632

17.578947

def record_context(self, space, frame): """Record a __context__ for this exception from the current frame if one exists. __context__ is otherwise lazily determined from the traceback. However the current frame.last_exception must be checked for a __context__ before this Operatio...

[ "def", "record_context", "(", "self", ",", "space", ",", "frame", ")", ":", "last_exception", "=", "frame", ".", "last_exception", "if", "(", "last_exception", "is", "not", "None", "and", "not", "frame", ".", "hide", "(", ")", "or", "last_exception", "is",...

52.166667

18.166667

def artist_versions(self, name=None, updater_name=None, updater_id=None, artist_id=None, is_active=None, is_banned=None, order=None): """Get list of artist versions (Requires login). Parameters: name (str): updater_name (str): ...

[ "def", "artist_versions", "(", "self", ",", "name", "=", "None", ",", "updater_name", "=", "None", ",", "updater_id", "=", "None", ",", "artist_id", "=", "None", ",", "is_active", "=", "None", ",", "is_banned", "=", "None", ",", "order", "=", "None", "...

38.25

13.458333

def train(self, sentences, save_loc=None, nr_iter=5): '''Train a model from sentences, and save it at ``save_loc``. ``nr_iter`` controls the number of Perceptron training iterations. :param sentences: A list of (words, tags) tuples. :param save_loc: If not ``None``, saves a pickled mode...

[ "def", "train", "(", "self", ",", "sentences", ",", "save_loc", "=", "None", ",", "nr_iter", "=", "5", ")", ":", "self", ".", "_make_tagdict", "(", "sentences", ")", "self", ".", "model", ".", "classes", "=", "self", ".", "classes", "for", "iter_", "...

45.885714

17.428571

def setup(self, paths=None): # pylint: disable=arguments-differ """Sets up the _paths attribute. Args: paths: Comma-separated list of strings representing the paths to collect. """ if not paths: self.state.add_error( 'No `paths` argument provided in recipe, bailing', critical=Tru...

[ "def", "setup", "(", "self", ",", "paths", "=", "None", ")", ":", "# pylint: disable=arguments-differ", "if", "not", "paths", ":", "self", ".", "state", ".", "add_error", "(", "'No `paths` argument provided in recipe, bailing'", ",", "critical", "=", "True", ")", ...

35.818182

24.272727

def set_tracking_id(self, data, clear=False): """ Add tracking-id data to the tracking_id group. :param data: A dictionary of key/value pairs. Keys must be strings. Values can be strings or numeric values. :param clear: If set, any existing tracking-id data will be removed. ...

[ "def", "set_tracking_id", "(", "self", ",", "data", ",", "clear", "=", "False", ")", ":", "self", ".", "assert_writeable", "(", ")", "self", ".", "_add_attributes", "(", "self", ".", "global_key", "+", "'tracking_id'", ",", "data", ",", "clear", ")", "re...

44.5

19

def _cache_update_needed(self, courseid): """ :param courseid: the (valid) course id of the course :raise InvalidNameException, CourseNotFoundException :return: True if an update of the cache is needed, False else """ if courseid not in self._cache: return Tru...

[ "def", "_cache_update_needed", "(", "self", ",", "courseid", ")", ":", "if", "courseid", "not", "in", "self", ".", "_cache", ":", "return", "True", "try", ":", "descriptor_name", "=", "self", ".", "_get_course_descriptor_path", "(", "courseid", ")", "last_upda...

44.481481

23.222222

def get_compositions_by_repository(self, repository_id): """Gets the list of ``Compositions`` associated with a ``Repository``. arg: repository_id (osid.id.Id): ``Id`` of the ``Repository`` return: (osid.repository.CompositionList) - list of related compositions raise...

[ "def", "get_compositions_by_repository", "(", "self", ",", "repository_id", ")", ":", "# Implemented from template for", "# osid.resource.ResourceBinSession.get_resources_by_bin", "mgr", "=", "self", ".", "_get_provider_manager", "(", "'REPOSITORY'", ",", "local", "=", "True"...

52.052632

21.368421

def expunge(self, instance): '''Remove *instance* from the :class:`Session`. Instance could be a :class:`Model` or an id. :parameter instance: a :class:`Model` or an *id* :rtype: the :class:`Model` removed from session or ``None`` if it was not in the session. ''' instance = self.pop(instan...

[ "def", "expunge", "(", "self", ",", "instance", ")", ":", "instance", "=", "self", ".", "pop", "(", "instance", ")", "instance", ".", "session", "=", "None", "return", "instance" ]

33.727273

18.636364

def get_user(email, password, *args, **kwargs): """Get user for grant type password. Needed for grant type 'password'. Note, grant type password is by default disabled. :param email: User email. :param password: Password. :returns: The user instance or ``None``. """ user = datastore.fi...

[ "def", "get_user", "(", "email", ",", "password", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "user", "=", "datastore", ".", "find_user", "(", "email", "=", "email", ")", "if", "user", "and", "user", ".", "active", "and", "verify_password", ...

32.461538

17.923077

def path_trace(map_projection, pts, closed=False, meta_data=None): ''' path_trace(proj, points) yields a path-trace object that represents the given path of points on the given map projection proj. The following options may be given: * closed (default: False) specifies whether the points fo...

[ "def", "path_trace", "(", "map_projection", ",", "pts", ",", "closed", "=", "False", ",", "meta_data", "=", "None", ")", ":", "return", "PathTrace", "(", "map_projection", ",", "pts", ",", "closed", "=", "closed", ",", "meta_data", "=", "meta_data", ")" ]

54.692308

35

def get_data_checksum(proc_input, proc_slug, proc_version): """Compute checksum of processor inputs, name and version.""" checksum = hashlib.sha256() checksum.update(json.dumps(proc_input, sort_keys=True).encode('utf-8')) checksum.update(proc_slug.encode('utf-8')) checksum.update(str(proc_version).e...

[ "def", "get_data_checksum", "(", "proc_input", ",", "proc_slug", ",", "proc_version", ")", ":", "checksum", "=", "hashlib", ".", "sha256", "(", ")", "checksum", ".", "update", "(", "json", ".", "dumps", "(", "proc_input", ",", "sort_keys", "=", "True", ")"...

51.571429

13.142857

def like_button_js_tag(context): """ This tag will check to see if they have the FACEBOOK_LIKE_APP_ID setup correctly in the django settings, if so then it will pass the data along to the intercom_tag template to be displayed. If something isn't perfect we will return False, which will then...

[ "def", "like_button_js_tag", "(", "context", ")", ":", "if", "FACEBOOK_APP_ID", "is", "None", ":", "log", ".", "warning", "(", "\"FACEBOOK_APP_ID isn't setup correctly in your settings\"", ")", "# make sure FACEBOOK_APP_ID is setup correct and user is authenticated", "if", "FAC...

42.363636

21.681818

def to_image(self, filename='palette.png', band_width=1, length=60, max_width=0, vertical=True, alpha_channel=False): """ Creates an image from the palette. Args: filename(Optional[string]): filename of saved file. Defaults to ``palette.png`` in the ...

[ "def", "to_image", "(", "self", ",", "filename", "=", "'palette.png'", ",", "band_width", "=", "1", ",", "length", "=", "60", ",", "max_width", "=", "0", ",", "vertical", "=", "True", ",", "alpha_channel", "=", "False", ")", ":", "# max_width is approximat...

38.851064

21.829787

def dragMouseButtonLeft(self, coord, dest_coord, interval=0.5): """Drag the left mouse button without modifiers pressed. Parameters: coordinates to click on screen (tuple (x, y)) dest coordinates to drag to (tuple (x, y)) interval to send event of btn down, drag ...

[ "def", "dragMouseButtonLeft", "(", "self", ",", "coord", ",", "dest_coord", ",", "interval", "=", "0.5", ")", ":", "modFlags", "=", "0", "self", ".", "_queueMouseButton", "(", "coord", ",", "Quartz", ".", "kCGMouseButtonLeft", ",", "modFlags", ",", "dest_coo...

42.230769

20.923077

def add_data_to_attribute(scenario_id, resource_attr_id, dataset,**kwargs): """ Add data to a resource scenario outside of a network update """ user_id = kwargs.get('user_id') _check_can_edit_scenario(scenario_id, user_id) scenario_i = _get_scenario(scenario_id, user_id) try: ...

[ "def", "add_data_to_attribute", "(", "scenario_id", ",", "resource_attr_id", ",", "dataset", ",", "*", "*", "kwargs", ")", ":", "user_id", "=", "kwargs", ".", "get", "(", "'user_id'", ")", "_check_can_edit_scenario", "(", "scenario_id", ",", "user_id", ")", "s...

41.282051

27.692308

def write(self, buf): """Write bytes to the stream.""" underflow = self._audio_stream.write(buf) if underflow: logging.warning('SoundDeviceStream write underflow (size: %d)', len(buf)) return len(buf)

[ "def", "write", "(", "self", ",", "buf", ")", ":", "underflow", "=", "self", ".", "_audio_stream", ".", "write", "(", "buf", ")", "if", "underflow", ":", "logging", ".", "warning", "(", "'SoundDeviceStream write underflow (size: %d)'", ",", "len", "(", "buf"...

38

14.571429

def columns_dataset(self): """ Generate the columns and the whole dataset. """ data = {} words_total = {} for instance, words in self.raw_dataset.items(): words_item_total = {} for word in words: words_total.setdefault(word, 0) ...

[ "def", "columns_dataset", "(", "self", ")", ":", "data", "=", "{", "}", "words_total", "=", "{", "}", "for", "instance", ",", "words", "in", "self", ".", "raw_dataset", ".", "items", "(", ")", ":", "words_item_total", "=", "{", "}", "for", "word", "i...

34.36

12.04

def _has_y(self, kwargs): '''Returns True if y is explicitly defined in kwargs''' return (('y' in kwargs) or (self._element_y in kwargs) or (self._type == 3 and self._element_1my in kwargs))

[ "def", "_has_y", "(", "self", ",", "kwargs", ")", ":", "return", "(", "(", "'y'", "in", "kwargs", ")", "or", "(", "self", ".", "_element_y", "in", "kwargs", ")", "or", "(", "self", ".", "_type", "==", "3", "and", "self", ".", "_element_1my", "in", ...

54.75

22.25

def get_status(self, response, finished=False): """Given the stdout from the command returned by :meth:`cmd_status`, return one of the status code defined in :mod:`clusterjob.status`""" status_pos = 0 for line in response.split("\n"): if line.startswith('JOBID'): ...

[ "def", "get_status", "(", "self", ",", "response", ",", "finished", "=", "False", ")", ":", "status_pos", "=", "0", "for", "line", "in", "response", ".", "split", "(", "\"\\n\"", ")", ":", "if", "line", ".", "startswith", "(", "'JOBID'", ")", ":", "t...

41.933333

10.066667

def iterative_encoder_decoder(encoder_input, encoder_self_attention_bias, encoder_decoder_attention_bias, query, hparams): """Iterative encoder decoder.""" for _ in range(hparams.num_rec_steps): ...

[ "def", "iterative_encoder_decoder", "(", "encoder_input", ",", "encoder_self_attention_bias", ",", "encoder_decoder_attention_bias", ",", "query", ",", "hparams", ")", ":", "for", "_", "in", "range", "(", "hparams", ".", "num_rec_steps", ")", ":", "with", "tf", "....

29.88

15.16

def get_events(**kwargs): """ Return a list of events matching the passed filter. Supported kwargs are listed at http://knowledge25.collegenet.com/display/WSW/events.xml """ url = "/r25ws/servlet/wrd/run/events.xml" if len(kwargs): url += "?%s" % urlencode(kwargs) return events_...

[ "def", "get_events", "(", "*", "*", "kwargs", ")", ":", "url", "=", "\"/r25ws/servlet/wrd/run/events.xml\"", "if", "len", "(", "kwargs", ")", ":", "url", "+=", "\"?%s\"", "%", "urlencode", "(", "kwargs", ")", "return", "events_from_xml", "(", "get_resource", ...

30.636364

11.545455

def kind(self): '''Returns a class representing the 'kind' of optic.''' optics = [ Equality, Isomorphism, Prism, Review, Lens, Traversal, Getter, Setter, Fold, ] for optic in optic...

[ "def", "kind", "(", "self", ")", ":", "optics", "=", "[", "Equality", ",", "Isomorphism", ",", "Prism", ",", "Review", ",", "Lens", ",", "Traversal", ",", "Getter", ",", "Setter", ",", "Fold", ",", "]", "for", "optic", "in", "optics", ":", "if", "s...

23.3125

19.5625

def parse_ctuple(s,length=2): '''parse a string of acceptable colors into matplotlib, that is, either strings, or three tuples of rgb. Don't quote strings. ''' if parse_utuple(s, colrx_s, length=length) is None: raise ValueError("{} is not a valid color tuple.".format(s)); #quote strings ...

[ "def", "parse_ctuple", "(", "s", ",", "length", "=", "2", ")", ":", "if", "parse_utuple", "(", "s", ",", "colrx_s", ",", "length", "=", "length", ")", "is", "None", ":", "raise", "ValueError", "(", "\"{} is not a valid color tuple.\"", ".", "format", "(", ...

40.777778

21.222222

def invoke_with_usage (self, args, **kwargs): """Invoke the command with standardized usage-help processing. Same calling convention as `Command.invoke()`. """ argv0 = kwargs['argv0'] usage = self._usage (argv0) argv = [argv0] + args uina = 'long' if self.help_if...

[ "def", "invoke_with_usage", "(", "self", ",", "args", ",", "*", "*", "kwargs", ")", ":", "argv0", "=", "kwargs", "[", "'argv0'", "]", "usage", "=", "self", ".", "_usage", "(", "argv0", ")", "argv", "=", "[", "argv0", "]", "+", "args", "uina", "=", ...

34.266667

12.266667

def mvarica(x, var, cl=None, reducedim=0.99, optimize_var=False, backend=None, varfit='ensemble', random_state=None): """ Performs joint VAR model fitting and ICA source separation. This function implements the MVARICA procedure [1]_. Parameters ---------- x : array-like, shape...

[ "def", "mvarica", "(", "x", ",", "var", ",", "cl", "=", "None", ",", "reducedim", "=", "0.99", ",", "optimize_var", "=", "False", ",", "backend", "=", "None", ",", "varfit", "=", "'ensemble'", ",", "random_state", "=", "None", ")", ":", "x", "=", "...

39.507813

26.070313

def __post(self, path, **kargs): ''' Make a HTTP POST request to the Dominos UK API with the given parameters for the current session. :param string path: The API endpoint path. :params list kargs: A list of arguments. :return: A response from the Dominos UK API. ...

[ "def", "__post", "(", "self", ",", "path", ",", "*", "*", "kargs", ")", ":", "return", "self", ".", "__call_api", "(", "self", ".", "session", ".", "post", ",", "path", ",", "*", "*", "kargs", ")" ]

37.545455

18.090909

def is_output(self, stream): """Check if a stream is a sensor graph output. Return: bool """ for streamer in self.streamers: if streamer.selector.matches(stream): return True return False

[ "def", "is_output", "(", "self", ",", "stream", ")", ":", "for", "streamer", "in", "self", ".", "streamers", ":", "if", "streamer", ".", "selector", ".", "matches", "(", "stream", ")", ":", "return", "True", "return", "False" ]

21.583333

18.666667

def get_first_property(elt, key, default=None, ctx=None): """Get first property related to one input key. :param elt: first property elt. Not None methods. :param str key: property key to get. :param default: default value to return if key does not exist in elt. properties :param ctx: elt c...

[ "def", "get_first_property", "(", "elt", ",", "key", ",", "default", "=", "None", ",", "ctx", "=", "None", ")", ":", "result", "=", "default", "properties", "=", "_get_properties", "(", "elt", ",", "keys", "=", "(", "key", ",", ")", ",", "ctx", "=", ...

33.571429

22.047619

def _fetch_objects(self, key, value): """Fetch Multiple linked objects""" return self.to_cls.query.filter(**{key: value})

[ "def", "_fetch_objects", "(", "self", ",", "key", ",", "value", ")", ":", "return", "self", ".", "to_cls", ".", "query", ".", "filter", "(", "*", "*", "{", "key", ":", "value", "}", ")" ]

45

6

def main(): """Use pip to find pip installed packages in a given prefix.""" pip_packages = {} for package in pip.get_installed_distributions(): name = package.project_name version = package.version full_name = "{0}-{1}-pip".format(name.lower(), version) pip_packages[full_name...

[ "def", "main", "(", ")", ":", "pip_packages", "=", "{", "}", "for", "package", "in", "pip", ".", "get_installed_distributions", "(", ")", ":", "name", "=", "package", ".", "project_name", "version", "=", "package", ".", "version", "full_name", "=", "\"{0}-...

38.7

14

def process_nxml_file(fname, output_fmt='json', outbuf=None, cleanup=True, **kwargs): """Return processor with Statements extracted by reading an NXML file. Parameters ---------- fname : str The path to the NXML file to be read. output_fmt: Optional[str] The ou...

[ "def", "process_nxml_file", "(", "fname", ",", "output_fmt", "=", "'json'", ",", "outbuf", "=", "None", ",", "cleanup", "=", "True", ",", "*", "*", "kwargs", ")", ":", "sp", "=", "None", "out_fname", "=", "None", "try", ":", "out_fname", "=", "run_spar...

33.085714

21.914286

def append(self, report): """Append a new CSP report.""" assert report not in self.examples self.count += 1 if len(self.examples) < self.top: self.examples.append(report)

[ "def", "append", "(", "self", ",", "report", ")", ":", "assert", "report", "not", "in", "self", ".", "examples", "self", ".", "count", "+=", "1", "if", "len", "(", "self", ".", "examples", ")", "<", "self", ".", "top", ":", "self", ".", "examples",...

34.833333

5.833333

def run(self): """ Execute all current and future payloads Blocks and executes payloads until :py:meth:`stop` is called. It is an error for any orphaned payload to return or raise. """ self._logger.info('runner started: %s', self) try: with self._lock...

[ "def", "run", "(", "self", ")", ":", "self", ".", "_logger", ".", "info", "(", "'runner started: %s'", ",", "self", ")", "try", ":", "with", "self", ".", "_lock", ":", "assert", "not", "self", ".", "running", ".", "is_set", "(", ")", "and", "self", ...

34.695652

18.26087

def _load_profile_imports(self, symbol_table): """ profile_imports is a list of module names or tuples of (module_name, names to import) in the form of ('.', names) it behaces like: from . import name1, name2, name3 or similarly import .name1, .name2, .name3 i.e. "name" in names becomes...

[ "def", "_load_profile_imports", "(", "self", ",", "symbol_table", ")", ":", "results", "=", "[", "]", "if", "'profile_imports'", "not", "in", "symbol_table", ":", "return", "results", "package", "=", "self", ".", "_get_package", "(", "symbol_table", ")", "prof...

36.037736

17.509434

def chunker(ensemble_list, ncpu): """ Generate successive chunks of ensemble_list. """ # determine sublist lengths length = int(len(ensemble_list) / ncpu) # generator for i in range(0, len(ensemble_list), length): yield ensemble_list[i:i + length]

[ "def", "chunker", "(", "ensemble_list", ",", "ncpu", ")", ":", "# determine sublist lengths", "length", "=", "int", "(", "len", "(", "ensemble_list", ")", "/", "ncpu", ")", "# generator", "for", "i", "in", "range", "(", "0", ",", "len", "(", "ensemble_list...

24.454545

12.727273

def get_stock_list(self): """ 回傳日常交易的代碼與名稱 :rtype: dict .. versionadded:: 0.5.6 """ all_stock = self.all_stock industry_comps = self.industry_comps result = {} for comps_no in self.get_stock_comps_list(): if comps_no in industry_comp...

[ "def", "get_stock_list", "(", "self", ")", ":", "all_stock", "=", "self", ".", "all_stock", "industry_comps", "=", "self", ".", "industry_comps", "result", "=", "{", "}", "for", "comps_no", "in", "self", ".", "get_stock_comps_list", "(", ")", ":", "if", "c...

28.375

16.4375