kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def calendar(request, year=None, month=None, template="gnotty/calendar.html"): """ Show calendar months for the given year/month. """ try: year = int(year) except TypeError: year = datetime.now().year lookup = {"message_time__year": year} if month: lookup["message_ti...	[ "def", "calendar", "(", "request", ",", "year", "=", "None", ",", "month", "=", "None", ",", "template", "=", "\"gnotty/calendar.html\"", ")", ":", "try", ":", "year", "=", "int", "(", "year", ")", "except", "TypeError", ":", "year", "=", "datetime", "...	34.977273	16.113636
def remove(self, force=False, timeout=-1): """ Removes the rackserver with the specified URI. Note: This operation is only supported on appliances that support rack-mounted servers. Args: force (bool): If set to true, the operation completes despite any probl...	[ "def", "remove", "(", "self", ",", "force", "=", "False", ",", "timeout", "=", "-", "1", ")", ":", "return", "self", ".", "delete", "(", "force", "=", "force", ",", "timeout", "=", "timeout", ")" ]	45.411765	28.352941
def dumpload(self, site=None, role=None): """ Dumps and loads a database snapshot simultaneously. Requires that the destination server has direct database access to the source server. This is better than a serial dump+load when: 1. The network connection is reliable. ...	[ "def", "dumpload", "(", "self", ",", "site", "=", "None", ",", "role", "=", "None", ")", ":", "r", "=", "self", ".", "database_renderer", "(", "site", "=", "site", ",", "role", "=", "role", ")", "r", ".", "run", "(", "'pg_dump -c --host={host_string} -...	43.5	17.9
def upload_file(self, container, src_file_path, dst_name=None, put=True, content_type=None): """Upload a single file.""" if not os.path.exists(src_file_path): raise RuntimeError('file not found: ' + src_file_path) if not dst_name: dst_name = os.path.ba...	[ "def", "upload_file", "(", "self", ",", "container", ",", "src_file_path", ",", "dst_name", "=", "None", ",", "put", "=", "True", ",", "content_type", "=", "None", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "src_file_path", ")", ":",...	43.566667	18.066667
def add_suspect(self, case_obj, variant_obj): """Link a suspect to a case.""" new_suspect = Suspect(case=case_obj, variant_id=variant_obj.variant_id, name=variant_obj.display_name) self.session.add(new_suspect) self.save() return new_suspect	[ "def", "add_suspect", "(", "self", ",", "case_obj", ",", "variant_obj", ")", ":", "new_suspect", "=", "Suspect", "(", "case", "=", "case_obj", ",", "variant_id", "=", "variant_obj", ".", "variant_id", ",", "name", "=", "variant_obj", ".", "display_name", ")"...	43.571429	14.571429
def sample_cleanup(data, sample): """ stats, cleanup, and link to samples """ ## get maxlen and depths array from clusters maxlens, depths = get_quick_depths(data, sample) try: depths.max() except ValueError: ## If depths is an empty array max() will raise print(" no clu...	[ "def", "sample_cleanup", "(", "data", ",", "sample", ")", ":", "## get maxlen and depths array from clusters", "maxlens", ",", "depths", "=", "get_quick_depths", "(", "data", ",", "sample", ")", "try", ":", "depths", ".", "max", "(", ")", "except", "ValueError",...	44.806452	24.989247
def _get_bound_pressure_height(pressure, bound, heights=None, interpolate=True): """Calculate the bounding pressure and height in a layer. Given pressure, optional heights, and a bound, return either the closest pressure/height or interpolated pressure/height. If no heights are provided, a standard atmosph...	[ "def", "_get_bound_pressure_height", "(", "pressure", ",", "bound", ",", "heights", "=", "None", ",", "interpolate", "=", "True", ")", ":", "# Make sure pressure is monotonically decreasing", "sort_inds", "=", "np", ".", "argsort", "(", "pressure", ")", "[", ":", ...	47.735294	24.735294
def delete(self, key): '''Removes the object named by `key` in `service`. Args: key: Key naming the object to remove. ''' key = self._service_key(key) self._service_ops['delete'](key)	[ "def", "delete", "(", "self", ",", "key", ")", ":", "key", "=", "self", ".", "_service_key", "(", "key", ")", "self", ".", "_service_ops", "[", "'delete'", "]", "(", "key", ")" ]	25.375	18.875
def fs_c(self, percent=0.9, N=None): """Get the column factor scores (dimensionality-reduced representation), choosing how many factors to retain, directly or based on the explained variance. 'percent': The minimum variance that the retained factors are required to explain (default: 90% = 0.9) 'N': T...	[ "def", "fs_c", "(", "self", ",", "percent", "=", "0.9", ",", "N", "=", "None", ")", ":", "if", "not", "0", "<=", "percent", "<=", "1", ":", "raise", "ValueError", "(", "\"Percent should be a real number between 0 and 1.\"", ")", "if", "N", ":", "if", "no...	43.925926	18.111111
def dispatch(self,request,args,*kwargs): ''' Handle the session data passed by the prior view. ''' lessonSession = request.session.get(PRIVATELESSON_VALIDATION_STR,{}) try: self.lesson = PrivateLessonEvent.objects.get(id=lessonSession.get('lesson')) except...	[ "def", "dispatch", "(", "self", ",", "request", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "lessonSession", "=", "request", ".", "session", ".", "get", "(", "PRIVATELESSON_VALIDATION_STR", ",", "{", "}", ")", "try", ":", "self", ".", "lesson"...	46.55	31.15
def wrap (text, width, **kwargs): """Adjust lines of text to be not longer than width. The text will be returned unmodified if width <= 0. See textwrap.wrap() for a list of supported kwargs. Returns text with lines no longer than given width.""" if width <= 0 or not text: return text ret...	[ "def", "wrap", "(", "text", ",", "width", ",", "", "", "kwargs", ")", ":", "if", "width", "<=", "0", "or", "not", "text", ":", "return", "text", "ret", "=", "[", "]", "for", "para", "in", "get_paragraphs", "(", "text", ")", ":", "text", "=", ...	40.583333	9.666667
def twovec(axdef, indexa, plndef, indexp): """ Find the transformation to the right-handed frame having a given vector as a specified axis and having a second given vector lying in a specified coordinate plane. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/twovec_c.html :param axdef:...	[ "def", "twovec", "(", "axdef", ",", "indexa", ",", "plndef", ",", "indexp", ")", ":", "axdef", "=", "stypes", ".", "toDoubleVector", "(", "axdef", ")", "indexa", "=", "ctypes", ".", "c_int", "(", "indexa", ")", "plndef", "=", "stypes", ".", "toDoubleVe...	39.961538	13.423077
def load_grid(self, alpha): '''Load grid and calculate alpha values from the coverage/2.5. ''' grid = CRGrid.crt_grid(self.dirs[0] + '/grid/elem.dat', self.dirs[0] + '/grid/elec.dat') self.plotman = CRPlot.plotManager(grid=grid) name = self.dirs[0]...	[ "def", "load_grid", "(", "self", ",", "alpha", ")", ":", "grid", "=", "CRGrid", ".", "crt_grid", "(", "self", ".", "dirs", "[", "0", "]", "+", "'/grid/elem.dat'", ",", "self", ".", "dirs", "[", "0", "]", "+", "'/grid/elec.dat'", ")", "self", ".", "...	43.111111	18.666667
def post(hosts=None, services=None, check_existance=True, create_services=True, create_hosts=False): """ Puts a list of hosts into local instance of nagios checkresults Arguments: hosts -- list of dicts, like one obtained from get_checkresults services -- list of dicts, like...	[ "def", "post", "(", "hosts", "=", "None", ",", "services", "=", "None", ",", "check_existance", "=", "True", ",", "create_services", "=", "True", ",", "create_hosts", "=", "False", ")", ":", "nagios_config", "=", "config", "(", ")", "nagios_config", ".", ...	39.794872	26.923077
def matches(self, spec): """ Matches a specification against the current Plot. """ if callable(spec) and not isinstance(spec, type): return spec(self) elif isinstance(spec, type): return isinstance(self, spec) else: raise ValueError("Matching specs have to be ...	[ "def", "matches", "(", "self", ",", "spec", ")", ":", "if", "callable", "(", "spec", ")", "and", "not", "isinstance", "(", "spec", ",", "type", ")", ":", "return", "spec", "(", "self", ")", "elif", "isinstance", "(", "spec", ",", "type", ")", ":", ...	42.875	20.875
def get_best_gain(mapping, candidate_mappings, weight_dict, instance_len, cur_match_num): """ Hill-climbing method to return the best gain swap/move can get Arguments: mapping: current node mapping candidate_mappings: the candidates mapping list weight_dict: the weight dictionary instance_le...	[ "def", "get_best_gain", "(", "mapping", ",", "candidate_mappings", ",", "weight_dict", ",", "instance_len", ",", "cur_match_num", ")", ":", "largest_gain", "=", "0", "# True: using swap; False: using move", "use_swap", "=", "True", "# the node to be moved/swapped", "node1...	43	16.212121
def tell(self): """Return the current position in the stream (ignoring bit position) :returns: int for the position in the stream """ res = self._stream.tell() if len(self._bits) > 0: res -= 1 return res	[ "def", "tell", "(", "self", ")", ":", "res", "=", "self", ".", "_stream", ".", "tell", "(", ")", "if", "len", "(", "self", ".", "_bits", ")", ">", "0", ":", "res", "-=", "1", "return", "res" ]	26.3	15.8
def df_query(self, query, with_labels=False): """ Run a :mod:`sqlalchemy` query and return result as a :class:`pandas.DataFrame` Args: query (sqlalchemy.orm.query.Query): query object, usually generated by :func:`session.query()` in an :class:`sqlalchemy.orm.session...	[ "def", "df_query", "(", "self", ",", "query", ",", "with_labels", "=", "False", ")", ":", "import", "pandas", "as", "pd", "if", "with_labels", ":", "query", "=", "query", ".", "with_labels", "(", ")", "# compile sql statement, including arguments", "statement", ...	44.703704	33.444444
def specific_gains(string): """Convert string with gains of individual amplification elements to dict""" if not string: return {} gains = {} for gain in string.split(','): amp_name, value = gain.split('=') gains[amp_name.strip()] = float(value.strip()) return gains	[ "def", "specific_gains", "(", "string", ")", ":", "if", "not", "string", ":", "return", "{", "}", "gains", "=", "{", "}", "for", "gain", "in", "string", ".", "split", "(", "','", ")", ":", "amp_name", ",", "value", "=", "gain", ".", "split", "(", ...	30.1	16.9
def load_file(self, input_file): """ Loads data array from file (result of this converter) Tries to import, load and replace files' data. It will overwirte previously added items with #add_file or #load_file. :param input_file :type str or unicode """ pyimg = im...	[ "def", "load_file", "(", "self", ",", "input_file", ")", ":", "pyimg", "=", "imp", ".", "load_source", "(", "'image2py_taf'", ",", "input_file", ")", "self", ".", "files", "=", "pyimg", ".", "data", "self", ".", "set_template", "(", "templates", ".", "te...	37.5	18.5
def strip_seq_cntrl(self, idx): """strip(2 byte) wlan.seq(12 bit) and wlan.fram(4 bit) number information. :seq_cntrl: ctypes.Structure :return: int sequence number :return: int fragment number """ seq_cntrl = struct.unpack('H', self._packe...	[ "def", "strip_seq_cntrl", "(", "self", ",", "idx", ")", ":", "seq_cntrl", "=", "struct", ".", "unpack", "(", "'H'", ",", "self", ".", "_packet", "[", "idx", ":", "idx", "+", "2", "]", ")", "[", "0", "]", "seq_num", "=", "seq_cntrl", ">>", "4", "f...	33.076923	10.692308
def best_other_class(logits, exclude): """Returns the index of the largest logit, ignoring the class that is passed as `exclude`.""" other_logits = logits - onehot_like(logits, exclude, value=np.inf) return np.argmax(other_logits)	[ "def", "best_other_class", "(", "logits", ",", "exclude", ")", ":", "other_logits", "=", "logits", "-", "onehot_like", "(", "logits", ",", "exclude", ",", "value", "=", "np", ".", "inf", ")", "return", "np", ".", "argmax", "(", "other_logits", ")" ]	51.6	7.6
def _general_multithread(func): """ return the general multithreading function using func """ def multithread(templates, stream, args, kwargs): with pool_boy(ThreadPool, len(stream), *kwargs) as pool: return _pool_normxcorr(templates, stream, pool=pool, func=func) return multithrea...	[ "def", "_general_multithread", "(", "func", ")", ":", "def", "multithread", "(", "templates", ",", "stream", ",", "", "args", ",", "", "", "kwargs", ")", ":", "with", "pool_boy", "(", "ThreadPool", ",", "len", "(", "stream", ")", ",", "", "*", "k...	39.25	22.875
def create_objects_for_type(self, raw_objects, o_type): """Generic function to create objects regarding the o_type This function create real Alignak objects from the raw data got from the configuration. :param raw_objects: Raw objects :type raw_objects: dict :param o_type: the ...	[ "def", "create_objects_for_type", "(", "self", ",", "raw_objects", ",", "o_type", ")", ":", "# Ex: the above code do for timeperiods:", "# timeperiods = []", "# for timeperiodcfg in objects['timeperiod']:", "# t = Timeperiod(timeperiodcfg)", "# timeperiods.append(t)", "# self.tim...	36.526316	17.289474
def reset_params(self): """(Re)set all parameters.""" units = [N_FEATURES] units += [self.hidden_units] * self.num_hidden units += [N_CLASSES] sequence = [] for u0, u1 in zip(units, units[1:]): sequence.append(nn.Linear(u0, u1)) sequence.append(se...	[ "def", "reset_params", "(", "self", ")", ":", "units", "=", "[", "N_FEATURES", "]", "units", "+=", "[", "self", ".", "hidden_units", "]", "*", "self", ".", "num_hidden", "units", "+=", "[", "N_CLASSES", "]", "sequence", "=", "[", "]", "for", "u0", ",...	32.571429	13.928571
def has_throttled(self): """ Check whether any of the CPU cores monitored by this instance has throttled since this instance was created. @return a boolean value """ for file, value in self.cpu_throttle_count.items(): try: new_value = int(util....	[ "def", "has_throttled", "(", "self", ")", ":", "for", "file", ",", "value", "in", "self", ".", "cpu_throttle_count", ".", "items", "(", ")", ":", "try", ":", "new_value", "=", "int", "(", "util", ".", "read_file", "(", "file", ")", ")", "if", "new_va...	38.5	15.071429
def angle_to_cartesian(lon, lat): """Convert spherical coordinates to cartesian unit vectors.""" theta = np.array(np.pi / 2. - lat) return np.vstack((np.sin(theta) * np.cos(lon), np.sin(theta) * np.sin(lon), np.cos(theta))).T	[ "def", "angle_to_cartesian", "(", "lon", ",", "lat", ")", ":", "theta", "=", "np", ".", "array", "(", "np", ".", "pi", "/", "2.", "-", "lat", ")", "return", "np", ".", "vstack", "(", "(", "np", ".", "sin", "(", "theta", ")", "*", "np", ".", "...	46	5
def visit_Identifier(self, node): """Mangle names.""" if not self._is_mangle_candidate(node): return name = node.value symbol = node.scope.resolve(node.value) if symbol is None: return mangled = symbol.scope.mangled.get(name) if mangled is ...	[ "def", "visit_Identifier", "(", "self", ",", "node", ")", ":", "if", "not", "self", ".", "_is_mangle_candidate", "(", "node", ")", ":", "return", "name", "=", "node", ".", "value", "symbol", "=", "node", ".", "scope", ".", "resolve", "(", "node", ".", ...	32	10.818182
def forward(self, inputs, begin_state): # pylint: disable=arguments-differ """Implement forward computation. Parameters ----------- inputs : NDArray input tensor with shape `(sequence_length, batch_size)` when `layout` is "TNC". begin_state : list ...	[ "def", "forward", "(", "self", ",", "inputs", ",", "begin_state", ")", ":", "# pylint: disable=arguments-differ", "encoded", "=", "self", ".", "embedding", "(", "inputs", ")", "length", "=", "inputs", ".", "shape", "[", "0", "]", "batch_size", "=", "inputs",...	42.59375	20.71875
def _load_db(): """Deserializes the script database from JSON.""" from os import path from pyci.utility import get_json global datapath, db datapath = path.abspath(path.expanduser(settings.datafile)) vms("Deserializing DB from {}".format(datapath)) db = get_json(datapath, {"installed": [], "...	[ "def", "_load_db", "(", ")", ":", "from", "os", "import", "path", "from", "pyci", ".", "utility", "import", "get_json", "global", "datapath", ",", "db", "datapath", "=", "path", ".", "abspath", "(", "path", ".", "expanduser", "(", "settings", ".", "dataf...	43	16.875
def nickmask(prefix: str, kwargs: Dict[str, Any]) -> None: """ store nick, user, host in kwargs if prefix is correct format """ if "!" in prefix and "@" in prefix: # From a user kwargs["nick"], remainder = prefix.split("!", 1) kwargs["user"], kwargs["host"] = remainder.split("@", 1) ...	[ "def", "nickmask", "(", "prefix", ":", "str", ",", "kwargs", ":", "Dict", "[", "str", ",", "Any", "]", ")", "->", "None", ":", "if", "\"!\"", "in", "prefix", "and", "\"@\"", "in", "prefix", ":", "# From a user", "kwargs", "[", "\"nick\"", "]", ",", ...	43.555556	13.333333
def predict_step(F, covX, filt): """Predictive step of Kalman filter. Parameters ---------- F: (dx, dx) numpy array Mean of X_t \| X_{t-1} is F * X_{t-1} covX: (dx, dx) numpy array covariance of X_t \| X_{t-1} filt: MeanAndCov object filtering distribution at time t-1 ...	[ "def", "predict_step", "(", "F", ",", "covX", ",", "filt", ")", ":", "pred_mean", "=", "np", ".", "matmul", "(", "filt", ".", "mean", ",", "F", ".", "T", ")", "pred_cov", "=", "dotdot", "(", "F", ",", "filt", ".", "cov", ",", "F", ".", "T", "...	27.48	16.8
def color_features(in_objectinfo, deredden=True, custom_bandpasses=None, dust_timeout=10.0): '''Stellar colors and dereddened stellar colors using 2MASS DUST API: http://irsa.ipac.caltech.edu/applications/DUST/docs/dustProgramInterface.html Paramete...	[ "def", "color_features", "(", "in_objectinfo", ",", "deredden", "=", "True", ",", "custom_bandpasses", "=", "None", ",", "dust_timeout", "=", "10.0", ")", ":", "objectinfo", "=", "in_objectinfo", ".", "copy", "(", ")", "# this is the initial output dict", "outdict...	40.9275	25.4125
def get_parameter_infos(config_hpp): """Parse config header file. Parameters ---------- config_hpp : string Path to the config header file. Returns ------- infos : tuple Tuple with names and content of sections. """ is_inparameter = False parameter_group = None ...	[ "def", "get_parameter_infos", "(", "config_hpp", ")", ":", "is_inparameter", "=", "False", "parameter_group", "=", "None", "cur_key", "=", "None", "cur_info", "=", "{", "}", "keys", "=", "[", "]", "member_infos", "=", "[", "]", "with", "open", "(", "config...	37.727273	12.227273
def autoconf(self): """Implements Munin Plugin Auto-Configuration Option. @return: True if plugin can be auto-configured, False otherwise. """ fpminfo = PHPfpmInfo(self._host, self._port, self._user, self._password, self._monpath,...	[ "def", "autoconf", "(", "self", ")", ":", "fpminfo", "=", "PHPfpmInfo", "(", "self", ".", "_host", ",", "self", ".", "_port", ",", "self", ".", "_user", ",", "self", ".", "_password", ",", "self", ".", "_monpath", ",", "self", ".", "_ssl", ")", "re...	39.777778	18.888889
def grant_symlink_privilege(who, machine=''): """ Grant the 'create symlink' privilege to who. Based on http://support.microsoft.com/kb/132958 """ flags = security.POLICY_CREATE_ACCOUNT \| security.POLICY_LOOKUP_NAMES policy = OpenPolicy(machine, flags) return policy	[ "def", "grant_symlink_privilege", "(", "who", ",", "machine", "=", "''", ")", ":", "flags", "=", "security", ".", "POLICY_CREATE_ACCOUNT", "\|", "security", ".", "POLICY_LOOKUP_NAMES", "policy", "=", "OpenPolicy", "(", "machine", ",", "flags", ")", "return", "p...	29.555556	13.111111
def make_update(cls, table, set_query, where=None): """ Make UPDATE query. :param str table: Table name of executing the query. :param str set_query: SET part of the UPDATE query. :param str where: Add a WHERE clause to execute query, if the value is not ...	[ "def", "make_update", "(", "cls", ",", "table", ",", "set_query", ",", "where", "=", "None", ")", ":", "validate_table_name", "(", "table", ")", "if", "typepy", ".", "is_null_string", "(", "set_query", ")", ":", "raise", "ValueError", "(", "\"SET query is nu...	36.4	17.04
def protected_adminview_factory(base_class): """Factory for creating protected admin view classes. The factory will ensure that the admin view will check if a user is authenticated and has the necessary permissions (as defined by the permission factory). The factory creates a new class using the pr...	[ "def", "protected_adminview_factory", "(", "base_class", ")", ":", "class", "ProtectedAdminView", "(", "base_class", ")", ":", "\"\"\"Admin view class protected by authentication.\"\"\"", "def", "_handle_view", "(", "self", ",", "name", ",", "", "", "kwargs", ")", "...	46	20.181818
def index(request, template_name="index.html"): """\ The index view, which basically just displays a button and increments a counter. """ if request.GET.get('ic-request'): counter, created = Counter.objects.get_or_create(pk=1) counter.value += 1 counter.save() else: ...	[ "def", "index", "(", "request", ",", "template_name", "=", "\"index.html\"", ")", ":", "if", "request", ".", "GET", ".", "get", "(", "'ic-request'", ")", ":", "counter", ",", "created", "=", "Counter", ".", "objects", ".", "get_or_create", "(", "pk", "="...	31.5625	17.125
def write_dataframe(rows, encoding=ENCODING, dialect=DIALECT, **kwargs): """Dump ``rows`` to string buffer and load with ``pandas.read_csv()`` using ``kwargs``.""" global pandas if pandas is None: # pragma: no cover import pandas with contextlib.closing(CsvBuffer()) as fd: write_csv(fd,...	[ "def", "write_dataframe", "(", "rows", ",", "encoding", "=", "ENCODING", ",", "dialect", "=", "DIALECT", ",", "", "", "kwargs", ")", ":", "global", "pandas", "if", "pandas", "is", "None", ":", "# pragma: no cover", "import", "pandas", "with", "contextlib",...	43	15.8
def read(self, vals): """Read values. Args: vals (list): list of strings representing values """ i = 0 count = int(vals[i]) i += 1 for _ in range(count): obj = DesignCondition() obj.read(vals[i:i + obj.field_count]) ...	[ "def", "read", "(", "self", ",", "vals", ")", ":", "i", "=", "0", "count", "=", "int", "(", "vals", "[", "i", "]", ")", "i", "+=", "1", "for", "_", "in", "range", "(", "count", ")", ":", "obj", "=", "DesignCondition", "(", ")", "obj", ".", ...	24.733333	16.333333
def fetch_exac_constraint(): """Fetch the file with exac constraint scores Returns: exac_lines(iterable(str)) """ file_name = 'fordist_cleaned_exac_r03_march16_z_pli_rec_null_data.txt' url = ('ftp://ftp.broadinstitute.org/pub/ExAC_release/release0.3/functional_gene_constraint' ...	[ "def", "fetch_exac_constraint", "(", ")", ":", "file_name", "=", "'fordist_cleaned_exac_r03_march16_z_pli_rec_null_data.txt'", "url", "=", "(", "'ftp://ftp.broadinstitute.org/pub/ExAC_release/release0.3/functional_gene_constraint'", "'/{0}'", ")", ".", "format", "(", "file_name", ...	36.086957	24.26087
def visit_ListComp(self, node: ast.ListComp) -> Any: """Compile the list comprehension as a function and call it.""" result = self._execute_comprehension(node=node) for generator in node.generators: self.visit(generator.iter) self.recomputed_values[node] = result re...	[ "def", "visit_ListComp", "(", "self", ",", "node", ":", "ast", ".", "ListComp", ")", "->", "Any", ":", "result", "=", "self", ".", "_execute_comprehension", "(", "node", "=", "node", ")", "for", "generator", "in", "node", ".", "generators", ":", "self", ...	35.888889	14.888889
def convert_images(image_list, image_format="png", timeout=20): """Convert images from list of images to given format, if needed. Figure out the types of the images that were extracted from the tarball and determine how to convert them into PNG. :param: image_list ([string, string, ...]): the list of ...	[ "def", "convert_images", "(", "image_list", ",", "image_format", "=", "\"png\"", ",", "timeout", "=", "20", ")", ":", "png_output_contains", "=", "'PNG image'", "image_mapping", "=", "{", "}", "for", "image_file", "in", "image_list", ":", "if", "os", ".", "p...	40.837209	21.255814
def _handle_redirect(self, r, **kwargs): """Reset auth_attempted on redirects.""" if r.is_redirect: self._thread_local.auth_attempted = False	[ "def", "_handle_redirect", "(", "self", ",", "r", ",", "", "", "kwargs", ")", ":", "if", "r", ".", "is_redirect", ":", "self", ".", "_thread_local", ".", "auth_attempted", "=", "False" ]	41.5	7
def _save_multi(data, file_name, sep=";"): """convenience function for storing data column-wise in a csv-file.""" logger.debug("saving multi") with open(file_name, "w", newline='') as f: logger.debug(f"{file_name} opened") writer = csv.writer(f, delimiter=sep) try: writer...	[ "def", "_save_multi", "(", "data", ",", "file_name", ",", "sep", "=", "\";\"", ")", ":", "logger", ".", "debug", "(", "\"saving multi\"", ")", "with", "open", "(", "file_name", ",", "\"w\"", ",", "newline", "=", "''", ")", "as", "f", ":", "logger", "...	46.083333	12.583333
def NamedDict(name, fields, description=None, type_attributes=DEFAULT_TYPE_ATTRIBUTES): ''' A :py:class:`Dict` with a name allowing it to be referenced by that name. ''' check_user_facing_fields_dict(fields, 'NamedDict named "{}"'.format(name)) class _NamedDict(_ConfigComposite): def __init...	[ "def", "NamedDict", "(", "name", ",", "fields", ",", "description", "=", "None", ",", "type_attributes", "=", "DEFAULT_TYPE_ATTRIBUTES", ")", ":", "check_user_facing_fields_dict", "(", "fields", ",", "'NamedDict named \"{}\"'", ".", "format", "(", "name", ")", ")"...	33.529412	22.352941
def classify(self, text): """ Chooses the highest scoring category for a sample of text :param text: sample text to classify :type text: str :return: the "winning" category :rtype: str """ score = self.score(text) if not score: return ...	[ "def", "classify", "(", "self", ",", "text", ")", ":", "score", "=", "self", ".", "score", "(", "text", ")", "if", "not", "score", ":", "return", "None", "return", "sorted", "(", "score", ".", "items", "(", ")", ",", "key", "=", "lambda", "v", ":...	28.923077	14.615385
def cmd_search(*args): """ Arguments: <keyword1> [<keyword2> [<keyword3> [...]]] List the documents containing the keywords. Syntax is the same than with the search field in Paperwork-gui. Search "" (empty string) to get all the documents. Example: 'label:contrat AND paperwork' Possible ...	[ "def", "cmd_search", "(", "*", "args", ")", ":", "dsearch", "=", "get_docsearch", "(", ")", "verbose", "(", "\"Search: {}\"", ".", "format", "(", "\" \"", ".", "join", "(", "args", ")", ")", ")", "r", "=", "{", "'results'", ":", "[", "]", "}", "doc...	27.404762	21.404762
def write(self, filename, compress=True, catalog_format="QUAKEML"): """ Write the tribe to a file using tar archive formatting. :type filename: str :param filename: Filename to write to, if it exists it will be appended to. :type compress: bool :param compres...	[ "def", "write", "(", "self", ",", "filename", ",", "compress", "=", "True", ",", "catalog_format", "=", "\"QUAKEML\"", ")", ":", "if", "catalog_format", "not", "in", "CAT_EXT_MAP", ".", "keys", "(", ")", ":", "raise", "TypeError", "(", "\"{0} is not supporte...	40.577778	17.288889
def to_json(self): """Serialize an object to JSON based on its "properties" class attribute. :rtype: string""" j = {} for p in self.properties: try: v = getattr(self, p) except AttributeError: continue if v is ...	[ "def", "to_json", "(", "self", ")", ":", "j", "=", "{", "}", "for", "p", "in", "self", ".", "properties", ":", "try", ":", "v", "=", "getattr", "(", "self", ",", "p", ")", "except", "AttributeError", ":", "continue", "if", "v", "is", "not", "None...	25.894737	16.789474
def get_assessments_metadata(self): """Gets the metadata for the assessments. return: (osid.Metadata) - metadata for the assessments compliance: mandatory -- This method must be implemented. """ # Implemented from template for osid.learning.ActivityForm.get_assets_metadata_te...	[ "def", "get_assessments_metadata", "(", "self", ")", ":", "# Implemented from template for osid.learning.ActivityForm.get_assets_metadata_template", "metadata", "=", "dict", "(", "self", ".", "_mdata", "[", "'assessments'", "]", ")", "metadata", ".", "update", "(", "{", ...	44.727273	22.909091
def observe(matcher): """ Internal decorator to trigger operator hooks before/after matcher execution. """ @functools.wraps(matcher) def observer(self, subject, expected, *kw): # Trigger before hook, if present if hasattr(self, 'before'): ...	[ "def", "observe", "(", "matcher", ")", ":", "@", "functools", ".", "wraps", "(", "matcher", ")", "def", "observer", "(", "self", ",", "subject", ",", "", "expected", ",", "", "*", "kw", ")", ":", "# Trigger before hook, if present", "if", "hasattr", "(...	35.935484	18.387097
def SetName(obj, name): """A compatibility wrapper for setting object's name. See documentation for `GetName` for more information. Args: obj: A type or function object to set the name for. name: A name to set. """ # Not doing type assertion on obj, since it may be a mock object used # in tests. ...	[ "def", "SetName", "(", "obj", ",", "name", ")", ":", "# Not doing type assertion on obj, since it may be a mock object used", "# in tests.", "precondition", ".", "AssertType", "(", "name", ",", "str", ")", "if", "PY2", ":", "obj", ".", "__name__", "=", "name", "."...	24.823529	21.176471
def add_triples(self, ontol): """ Adds triples to an ontology object. Currently assumes gocam/lego-style """ rg = self.rdfgraph g = ontol.get_graph() typemap = {} inds = rg.subjects(RDF.type, OWL.NamedIndividual) for s in inds: for (s,...	[ "def", "add_triples", "(", "self", ",", "ontol", ")", ":", "rg", "=", "self", ".", "rdfgraph", "g", "=", "ontol", ".", "get_graph", "(", ")", "typemap", "=", "{", "}", "inds", "=", "rg", ".", "subjects", "(", "RDF", ".", "type", ",", "OWL", ".", ...	37.83871	14.225806
def write_satellites(self, *args): """ Write a satellite constellation record:: writer.write_satellites(datetime.time(12, 34, 56), [1, 2, 5, 22]) # -> F12345601020522 :param time: UTC time of the satellite constellation record (default: :meth:`~datetime.date...	[ "def", "write_satellites", "(", "self", ",", "*", "args", ")", ":", "num_args", "=", "len", "(", "args", ")", "if", "num_args", "not", "in", "(", "1", ",", "2", ")", ":", "raise", "ValueError", "(", "'Invalid number of parameters received'", ")", "if", "...	29	19
def _del_process(self, dwProcessId): """ Private method to remove a process object from the snapshot. @type dwProcessId: int @param dwProcessId: Global process ID. """ try: aProcess = self.__processDict[dwProcessId] del self.__processDict[dwProce...	[ "def", "_del_process", "(", "self", ",", "dwProcessId", ")", ":", "try", ":", "aProcess", "=", "self", ".", "__processDict", "[", "dwProcessId", "]", "del", "self", ".", "__processDict", "[", "dwProcessId", "]", "except", "KeyError", ":", "aProcess", "=", ...	32.25	13.625
def _run_play(self, play): ''' run a list of tasks for a given pattern, in order ''' self.callbacks.on_play_start(play.name) # if no hosts matches this play, drop out if not self.inventory.list_hosts(play.hosts): self.callbacks.on_no_hosts_matched() return True ...	[ "def", "_run_play", "(", "self", ",", "play", ")", ":", "self", ".", "callbacks", ".", "on_play_start", "(", "play", ".", "name", ")", "# if no hosts matches this play, drop out", "if", "not", "self", ".", "inventory", ".", "list_hosts", "(", "play", ".", "h...	36.552239	18.940299
def validate(self, value, messages=None, prefix=None): """validate(value[, messages[, prefix]]) -> True \| False Validates the given value according to this PrimitiveType definition. Validation error messages are appended to an optional messages array, each with the optional message pre...	[ "def", "validate", "(", "self", ",", "value", ",", "messages", "=", "None", ",", "prefix", "=", "None", ")", ":", "valid", "=", "False", "def", "log", "(", "msg", ")", ":", "if", "messages", "is", "not", "None", ":", "if", "prefix", "is", "not", ...	39.939394	20.272727
def get_action(self, parent, undo_stack: QUndoStack, sel_range, protocol: ProtocolAnalyzer, view: int): """ :type parent: QTableView :type undo_stack: QUndoStack :type protocol_analyzers: list of ProtocolAnalyzer """ min_row, max_row, start, end = sel_range if min...	[ "def", "get_action", "(", "self", ",", "parent", ",", "undo_stack", ":", "QUndoStack", ",", "sel_range", ",", "protocol", ":", "ProtocolAnalyzer", ",", "view", ":", "int", ")", ":", "min_row", ",", "max_row", ",", "start", ",", "end", "=", "sel_range", "...	38.857143	20.571429
def rank(matrix, atol=1e-13, rtol=0): """ Estimate the rank, i.e., the dimension of the column space, of a matrix. The algorithm used by this function is based on the singular value decomposition of `stoichiometry_matrix`. Parameters ---------- matrix : ndarray The matrix should be...	[ "def", "rank", "(", "matrix", ",", "atol", "=", "1e-13", ",", "rtol", "=", "0", ")", ":", "matrix", "=", "np", ".", "atleast_2d", "(", "matrix", ")", "sigma", "=", "svd", "(", "matrix", ",", "compute_uv", "=", "False", ")", "tol", "=", "max", "("...	30.533333	23.066667
def create_status(self, state, target_url=github.GithubObject.NotSet, description=github.GithubObject.NotSet, context=github.GithubObject.NotSet): """ :calls: `POST /repos/:owner/:repo/statuses/:sha <http://developer.github.com/v3/repos/statuses>`_ :param state: string :param target_url:...	[ "def", "create_status", "(", "self", ",", "state", ",", "target_url", "=", "github", ".", "GithubObject", ".", "NotSet", ",", "description", "=", "github", ".", "GithubObject", ".", "NotSet", ",", "context", "=", "github", ".", "GithubObject", ".", "NotSet",...	54.107143	26.964286
def tofile(path=""): """Instead of printing to a screen print to a file :Example: with pout.tofile("/path/to/file.txt"): # all pout calls in this with block will print to file.txt pout.v("a string") pout.b() pout.h() :param path: str, a path to the f...	[ "def", "tofile", "(", "path", "=", "\"\"", ")", ":", "if", "not", "path", ":", "path", "=", "os", ".", "path", ".", "join", "(", "os", ".", "getcwd", "(", ")", ",", "\"{}.txt\"", ".", "format", "(", "__name__", ")", ")", "global", "stream", "orig...	23.583333	22.625
def resolve(self, pargs, *kwargs): """Resolve the promise.""" self._cached = (pargs, kwargs) self._try_then()	[ "def", "resolve", "(", "self", ",", "", "pargs", ",", "", "*", "kwargs", ")", ":", "self", ".", "_cached", "=", "(", "pargs", ",", "kwargs", ")", "self", ".", "_try_then", "(", ")" ]	33	5.5
def _map_or_starmap(function, iterable, args, kwargs, map_or_starmap): """ Shared function between parmap.map and parmap.starmap. Refer to those functions for details. """ arg_newarg = (("parallel", "pm_parallel"), ("chunksize", "pm_chunksize"), ("pool", "pm_pool"), ("processes", "...	[ "def", "_map_or_starmap", "(", "function", ",", "iterable", ",", "args", ",", "kwargs", ",", "map_or_starmap", ")", ":", "arg_newarg", "=", "(", "(", "\"parallel\"", ",", "\"pm_parallel\"", ")", ",", "(", "\"chunksize\"", ",", "\"pm_chunksize\"", ")", ",", "...	43.592593	16.740741
def create_float(self, value: float) -> Float: """ Creates a new :class:`ConstantFloat`, adding it to the pool and returning it. :param value: The value of the new float. """ self.append((4, value)) return self.get(self.raw_count - 1)	[ "def", "create_float", "(", "self", ",", "value", ":", "float", ")", "->", "Float", ":", "self", ".", "append", "(", "(", "4", ",", "value", ")", ")", "return", "self", ".", "get", "(", "self", ".", "raw_count", "-", "1", ")" ]	31.444444	13
def register(self, resource_name, dependent=None): ''' Register the given dependent as depending on the "resource" named by resource_name. ''' if dependent is None: # Give a partial usable as a decorator return partial(self.register, resource_name) ...	[ "def", "register", "(", "self", ",", "resource_name", ",", "dependent", "=", "None", ")", ":", "if", "dependent", "is", "None", ":", "# Give a partial usable as a decorator", "return", "partial", "(", "self", ".", "register", ",", "resource_name", ")", "dependen...	37.266667	20.466667
def get_airport_metars(self, iata, page=1, limit=100): """Retrieve the metar data at the current time Given the IATA code of an airport, this method returns the metar information. Args: iata (str): The IATA code for an airport, e.g. HYD page (int): Optional page number;...	[ "def", "get_airport_metars", "(", "self", ",", "iata", ",", "page", "=", "1", ",", "limit", "=", "100", ")", ":", "url", "=", "AIRPORT_DATA_BASE", ".", "format", "(", "iata", ",", "str", "(", "self", ".", "AUTH_TOKEN", ")", ",", "page", ",", "limit",...	35.92	25.16
def apply_chromatic_adaptation_on_color(color, targ_illum, adaptation='bradford'): """ Convenience function to apply an adaptation directly to a Color object. """ xyz_x = color.xyz_x xyz_y = color.xyz_y xyz_z = color.xyz_z orig_illum = color.illuminant targ_illum = targ_illum.lower() ...	[ "def", "apply_chromatic_adaptation_on_color", "(", "color", ",", "targ_illum", ",", "adaptation", "=", "'bradford'", ")", ":", "xyz_x", "=", "color", ".", "xyz_x", "xyz_y", "=", "color", ".", "xyz_y", "xyz_z", "=", "color", ".", "xyz_z", "orig_illum", "=", "...	33.894737	17.052632
def split(text: str) -> List[str]: """Split a text into a list of tokens. :param text: the text to split :return: tokens """ return [word for word in SEPARATOR.split(text) if word.strip(' \t')]	[ "def", "split", "(", "text", ":", "str", ")", "->", "List", "[", "str", "]", ":", "return", "[", "word", "for", "word", "in", "SEPARATOR", ".", "split", "(", "text", ")", "if", "word", ".", "strip", "(", "' \\t'", ")", "]" ]	29.714286	15
def mdot_t(self,ifig=None,lims=[7.4,2.6,-8.5,-4.5],label=None,colour=None,s2ms=False, dashes=None): """ Plot mass loss history as a function of log-time-left Parameters ---------- ifig : integer or string Figure label, if None the current figure is use...	[ "def", "mdot_t", "(", "self", ",", "ifig", "=", "None", ",", "lims", "=", "[", "7.4", ",", "2.6", ",", "-", "8.5", ",", "-", "4.5", "]", ",", "label", "=", "None", ",", "colour", "=", "None", ",", "s2ms", "=", "False", ",", "dashes", "=", "No...	29.882353	15.882353
def on_lxml_loads(self, lxml, config, content, **kwargs): """ The `lxml <https://pypi.org/project/lxml/>`_ loads method. :param module lxml: The ``lxml`` module :param class config: The loading config class :param str content: The content to deserialize :param str encoding: The ...	[ "def", "on_lxml_loads", "(", "self", ",", "lxml", ",", "config", ",", "content", ",", "", "", "kwargs", ")", ":", "# NOTE: lazy import of XMLParser because class requires lxml to exist on import", "from", ".", ".", "contrib", ".", "xml_parser", "import", "XMLParser"...	40.277778	20
def list(self, all_pages=False, **kwargs): """Return a list of objects. If one or more filters are provided through keyword arguments, filter the results accordingly. If no filters are provided, return all results. =====API DOCS===== Retrieve a list of objects. :param...	[ "def", "list", "(", "self", ",", "all_pages", "=", "False", ",", "", "", "kwargs", ")", ":", "# TODO: Move to a field callback method to make it generic", "# If multiple statuses where given, add OR queries for each of them", "if", "kwargs", ".", "get", "(", "'status'", ...	42	23.12069
def from_folder(cls, path:PathOrStr, train:PathOrStr='train', valid:PathOrStr='valid', valid_pct=None, classes:Collection=None, **kwargs:Any)->'ImageDataBunch': "Create from imagenet style dataset in `path` with `train`,`valid`,`test` subfolders (or provide `valid_pct`)." path=Path(p...	[ "def", "from_folder", "(", "cls", ",", "path", ":", "PathOrStr", ",", "train", ":", "PathOrStr", "=", "'train'", ",", "valid", ":", "PathOrStr", "=", "'valid'", ",", "valid_pct", "=", "None", ",", "classes", ":", "Collection", "=", "None", ",", "", "...	65.777778	29.555556
def pop(self): ''' Pop an event from the queue. The event in the queue with higher priority is popped before ones in lower priority. If there are multiple queues with the same priority, events are taken in turn from each queue. May return some queueEvents indicating that some of the queu...	[ "def", "pop", "(", "self", ")", ":", "ret", "=", "self", ".", "_pop", "(", ")", "if", "self", ".", "parent", "is", "not", "None", ":", "pr", "=", "self", ".", "parent", ".", "notifyPop", "(", "self", ")", "ret", "[", "1", "]", ".", "extend", ...	52.266667	35.466667
def _handle_loads(cls, handler, content, validate=False, **kwargs): """ Loads caller, used by partial method for dynamic handler assignments. :param object handler: The loads handler :param str content: The content to load from :param bool validate: Performs content validation before loading, d...	[ "def", "_handle_loads", "(", "cls", ",", "handler", ",", "content", ",", "validate", "=", "False", ",", "", "", "kwargs", ")", ":", "return", "from_dict", "(", "cls", ",", "handler", ".", "loads", "(", "cls", ",", "content", ",", "", "", "kwargs"...	40	18.833333
def _add_numeric_operations(cls): """ Add the operations to the cls; evaluate the doc strings again """ axis_descr, name, name2 = _doc_parms(cls) cls.any = _make_logical_function( cls, 'any', name, name2, axis_descr, _any_desc, nanops.nanany, _any_see_al...	[ "def", "_add_numeric_operations", "(", "cls", ")", ":", "axis_descr", ",", "name", ",", "name2", "=", "_doc_parms", "(", "cls", ")", "cls", ".", "any", "=", "_make_logical_function", "(", "cls", ",", "'any'", ",", "name", ",", "name2", ",", "axis_descr", ...	46.336	16.752
def print_object_attributes( thing, heading=None, file=None ): ''' Print the attribute names in thing vertically ''' if heading : print( '==', heading, '==', file=file ) print( '\n'.join( object_attributes( thing ) ), file=file )	[ "def", "print_object_attributes", "(", "thing", ",", "heading", "=", "None", ",", "file", "=", "None", ")", ":", "if", "heading", ":", "print", "(", "'=='", ",", "heading", ",", "'=='", ",", "file", "=", "file", ")", "print", "(", "'\\n'", ".", "join...	40.666667	22.666667
def update(self, dt=None): """Simulate the model for a given time interval. Parameters ---------- dt : Optional[float] The time step to simulate, if None, the default built-in time step is used. """ # EMELI passes dt = -1 so we need to handle that...	[ "def", "update", "(", "self", ",", "dt", "=", "None", ")", ":", "# EMELI passes dt = -1 so we need to handle that here", "dt", "=", "dt", "if", "(", "dt", "is", "not", "None", "and", "dt", ">", "0", ")", "else", "self", ".", "dt", "tspan", "=", "[", "0...	38	16.047619
def download(self, force=False): """ Download file containing this package. :param force: Force download even if it seems file already exists :return: Full path with filename of downloaded package file. """ exists, dest_path = self._downloader.cache.exists_packed(package=...	[ "def", "download", "(", "self", ",", "force", "=", "False", ")", ":", "exists", ",", "dest_path", "=", "self", ".", "_downloader", ".", "cache", ".", "exists_packed", "(", "package", "=", "self", ",", "pkg_path", "=", "self", ".", "packed_path", ",", "...	40.388889	18.222222
def deposit(self, asset, amount, private_key): """ This function is a wrapper function around the create and execute deposit functions to help make this processes simpler for the end user by combining these requests in 1 step. Execution of this function is as follows:: depos...	[ "def", "deposit", "(", "self", ",", "asset", ",", "amount", ",", "private_key", ")", ":", "create_deposit", "=", "self", ".", "create_deposit", "(", "asset", "=", "asset", ",", "amount", "=", "amount", ",", "private_key", "=", "private_key", ")", "return",...	48.92	31.48
def ValidateAndReturnIntValue(value, allowed_values, default, allow_empty, column_name=None, problems=None): """ Validates a value to be a valid integer in the list of allowed values: - if no integer value adds InvalidValue error and returns the default value - if integer but n...	[ "def", "ValidateAndReturnIntValue", "(", "value", ",", "allowed_values", ",", "default", ",", "allow_empty", ",", "column_name", "=", "None", ",", "problems", "=", "None", ")", ":", "if", "allow_empty", "and", "IsEmpty", "(", "value", ")", ":", "return", "de...	36.441176	18.441176
def get_gene_seqs(database_path, gene): """ This function takes the database path and a gene name as inputs and returns the gene sequence contained in the file given by the gene name """ gene_path = database_path + "/" + gene + ".fsa" gene_seq = "" # Open fasta file with open(gene_path)...	[ "def", "get_gene_seqs", "(", "database_path", ",", "gene", ")", ":", "gene_path", "=", "database_path", "+", "\"/\"", "+", "gene", "+", "\".fsa\"", "gene_seq", "=", "\"\"", "# Open fasta file", "with", "open", "(", "gene_path", ")", "as", "gene_file", ":", "...	33.5	12.785714
def __deprecate_defaults( self, new_func: str, bg_blend: Any, alignment: Any = ..., clear: Any = ..., ) -> None: """Return the parameters needed to recreate the current default state. """ if not __debug__: return fg = self.default_...	[ "def", "__deprecate_defaults", "(", "self", ",", "new_func", ":", "str", ",", "bg_blend", ":", "Any", ",", "alignment", ":", "Any", "=", "...", ",", "clear", ":", "Any", "=", "...", ",", ")", "->", "None", ":", "if", "not", "__debug__", ":", "return"...	32.881356	15.508475
def _format_name_map(self, lon, lat): ''' Return the name of the map in the good format ''' if self.ppd in [4, 16, 64, 128]: lolaname = '_'.join(['LDEM', str(self.ppd)]) elif self.ppd in [512]: lolaname = '_'.join( ['LDEM', str(self.ppd), lat[0], lat[1], ...	[ "def", "_format_name_map", "(", "self", ",", "lon", ",", "lat", ")", ":", "if", "self", ".", "ppd", "in", "[", "4", ",", "16", ",", "64", ",", "128", "]", ":", "lolaname", "=", "'_'", ".", "join", "(", "[", "'LDEM'", ",", "str", "(", "self", ...	39.111111	16.222222
def collision_integral_Neufeld_Janzen_Aziz(Tstar, l=1, s=1): r'''Calculates Lennard-Jones collision integral for any of 16 values of (l,j) for the wide range of 0.3 < Tstar < 100. Values are accurate to 0.1 % of actual values, but the calculation of actual values is computationally intensive and so thes...	[ "def", "collision_integral_Neufeld_Janzen_Aziz", "(", "Tstar", ",", "l", "=", "1", ",", "s", "=", "1", ")", ":", "if", "(", "l", ",", "s", ")", "not", "in", "Neufeld_collision", ":", "raise", "Exception", "(", "'Input values of l and s are not supported'", ")"...	33.370968	25.951613
def linear(self, limits=None, k=5): """Returns an ndarray of linear breaks.""" start, stop = limits or (self.minval, self.maxval) return np.linspace(start, stop, k)	[ "def", "linear", "(", "self", ",", "limits", "=", "None", ",", "k", "=", "5", ")", ":", "start", ",", "stop", "=", "limits", "or", "(", "self", ".", "minval", ",", "self", ".", "maxval", ")", "return", "np", ".", "linspace", "(", "start", ",", ...	46.25	6.25
def string_to_timestruct(input_string): # type: (bytes) -> time.struct_time ''' A cacheable function to take an input string and decode it into a time.struct_time from the time module. If the string cannot be decoded because of an illegal value, then the all-zero time.struct_time will be return...	[ "def", "string_to_timestruct", "(", "input_string", ")", ":", "# type: (bytes) -> time.struct_time", "try", ":", "timestruct", "=", "time", ".", "strptime", "(", "input_string", ".", "decode", "(", "'utf-8'", ")", ",", "VolumeDescriptorDate", ".", "TIME_FMT", ")", ...	43.8	26.92
def watchpoint_info(self, handle=0, index=-1): """Returns information about the specified watchpoint. Note: Either ``handle`` or ``index`` can be specified. If the ``index`` is not provided, the ``handle`` must be set, and vice-versa. If both ``index`` and ``handle`` are...	[ "def", "watchpoint_info", "(", "self", ",", "handle", "=", "0", ",", "index", "=", "-", "1", ")", ":", "if", "index", "<", "0", "and", "handle", "==", "0", ":", "raise", "ValueError", "(", "'Handle must be provided if index is not set.'", ")", "wp", "=", ...	38.394737	24
def pop_all(self): """ NON-BLOCKING POP ALL IN QUEUE, IF ANY """ with self.lock: if self.please_stop: return [THREAD_STOP] if self.db.status.end == self.start: return [] output = [] for i in range(self.start...	[ "def", "pop_all", "(", "self", ")", ":", "with", "self", ".", "lock", ":", "if", "self", ".", "please_stop", ":", "return", "[", "THREAD_STOP", "]", "if", "self", ".", "db", ".", "status", ".", "end", "==", "self", ".", "start", ":", "return", "[",...	27.8125	13.6875
def letter_score(letter): """Returns the Scrabble score of a letter. Args: letter: a single character string Raises: TypeError if a non-Scrabble character is supplied """ score_map = { 1: ["a", "e", "i", "o", "u", "l", "n", "r", "s", "t"], 2: ["d", "g"], 3:...	[ "def", "letter_score", "(", "letter", ")", ":", "score_map", "=", "{", "1", ":", "[", "\"a\"", ",", "\"e\"", ",", "\"i\"", ",", "\"o\"", ",", "\"u\"", ",", "\"l\"", ",", "\"n\"", ",", "\"r\"", ",", "\"s\"", ",", "\"t\"", "]", ",", "2", ":", "[", ...	24	19.48
def normalize_cpp_function(self, function, line): """Normalizes a single cpp frame with a function""" # Drop member function cv/ref qualifiers like const, const&, &, and && for ref in ('const', 'const&', '&&', '&'): if function.endswith(ref): function = function[:-len...	[ "def", "normalize_cpp_function", "(", "self", ",", "function", ",", "line", ")", ":", "# Drop member function cv/ref qualifiers like const, const&, &, and &&", "for", "ref", "in", "(", "'const'", ",", "'const&'", ",", "'&&'", ",", "'&'", ")", ":", "if", "function", ...	35.137255	19.156863
def unwrap(klass, value): """Unpack a Value into an augmented python type (selected from the 'value' field) """ assert isinstance(value, Value), value V = value.value try: T = klass.typeMap[type(V)] except KeyError: raise ValueError("Can't unwrap v...	[ "def", "unwrap", "(", "klass", ",", "value", ")", ":", "assert", "isinstance", "(", "value", ",", "Value", ")", ",", "value", "V", "=", "value", ".", "value", "try", ":", "T", "=", "klass", ".", "typeMap", "[", "type", "(", "V", ")", "]", "except...	40.461538	16.769231
def _check_output(self, command): """Wrap the call to subprocess.check_output() to raise customized exceptions and always return strings.""" try: if sys.version_info[0] > 2: return check_output(self.base_command + command, stderr=STDOUT).decode('utf8') else: ...	[ "def", "_check_output", "(", "self", ",", "command", ")", ":", "try", ":", "if", "sys", ".", "version_info", "[", "0", "]", ">", "2", ":", "return", "check_output", "(", "self", ".", "base_command", "+", "command", ",", "stderr", "=", "STDOUT", ")", ...	55.222222	20.111111
def explain(self, args, kwargs): '''Return a string that describes how these args are interpreted''' args = self.get(args, **kwargs) results = ['%s = %s' % (name, value) for name, value in args.required] results.extend(['%s = %s (overridden)' % ( name, value) for name, va...	[ "def", "explain", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "args", "=", "self", ".", "get", "(", "", "args", ",", "", "", "kwargs", ")", "results", "=", "[", "'%s = %s'", "%", "(", "name", ",", "value", ")", "for", ...	51.230769	17.538462
def loads(s, single=False, version=_default_version, strict=False, errors='warn'): """ Deserialize SimpleMRS string representations Args: s (str): a SimpleMRS string single (bool): if `True`, only return the first Xmrs object Returns: a generator of Xmrs objects (unles...	[ "def", "loads", "(", "s", ",", "single", "=", "False", ",", "version", "=", "_default_version", ",", "strict", "=", "False", ",", "errors", "=", "'warn'", ")", ":", "ms", "=", "deserialize", "(", "s", ",", "version", "=", "version", ",", "strict", "=...	29.5	18.875
def _aggregate(self, instanceId, container, value, subKey = None): """Performs stat aggregation.""" # Get the aggregator. if instanceId not in self._aggregators: self._aggregators[instanceId] = _Stats.getAggregator(instanceId, self.__name) aggregator = self._aggregators[instanceId] # If we a...	[ "def", "_aggregate", "(", "self", ",", "instanceId", ",", "container", ",", "value", ",", "subKey", "=", "None", ")", ":", "# Get the aggregator.", "if", "instanceId", "not", "in", "self", ".", "_aggregators", ":", "self", ".", "_aggregators", "[", "instance...	37.3125	19.4375
def acquire(self, **kwargs): """ Copy the file and return its path Returns ------- str or None The path of the file in BatchUp's temporary directory or None if the copy failed. """ if self.source_path is None: source_path = kwa...	[ "def", "acquire", "(", "self", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "source_path", "is", "None", ":", "source_path", "=", "kwargs", "[", "self", ".", "arg_name", "]", "else", ":", "source_path", "=", "self", ".", "source_path", "return...	30.6	16.6
def remove_room_alias(self, room_alias): """Remove mapping of an alias Args: room_alias(str): The alias to be removed. Returns: bool: True if the alias is removed, False otherwise. """ try: self.api.remove_room_alias(room_alias) r...	[ "def", "remove_room_alias", "(", "self", ",", "room_alias", ")", ":", "try", ":", "self", ".", "api", ".", "remove_room_alias", "(", "room_alias", ")", "return", "True", "except", "MatrixRequestError", ":", "return", "False" ]	26.928571	17.5
def find_matches(strings, words, length_hoped): """ Used by default property excerpt """ lower_words = [w.lower() for w in words] def has_match(string): """ Do any of the words match within the string """ lower_string = string.lower() for test_word in lower_w...	[ "def", "find_matches", "(", "strings", ",", "words", ",", "length_hoped", ")", ":", "lower_words", "=", "[", "w", ".", "lower", "(", ")", "for", "w", "in", "words", "]", "def", "has_match", "(", "string", ")", ":", "\"\"\" Do any of the words match within th...	35.4	15.04

def calendar(request, year=None, month=None, template="gnotty/calendar.html"): """ Show calendar months for the given year/month. """ try: year = int(year) except TypeError: year = datetime.now().year lookup = {"message_time__year": year} if month: lookup["message_ti...

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34.977273

16.113636

def remove(self, force=False, timeout=-1): """ Removes the rackserver with the specified URI. Note: This operation is only supported on appliances that support rack-mounted servers. Args: force (bool): If set to true, the operation completes despite any probl...

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45.411765

28.352941

def dumpload(self, site=None, role=None): """ Dumps and loads a database snapshot simultaneously. Requires that the destination server has direct database access to the source server. This is better than a serial dump+load when: 1. The network connection is reliable. ...

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43.5

17.9

def upload_file(self, container, src_file_path, dst_name=None, put=True, content_type=None): """Upload a single file.""" if not os.path.exists(src_file_path): raise RuntimeError('file not found: ' + src_file_path) if not dst_name: dst_name = os.path.ba...

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43.566667

18.066667

def add_suspect(self, case_obj, variant_obj): """Link a suspect to a case.""" new_suspect = Suspect(case=case_obj, variant_id=variant_obj.variant_id, name=variant_obj.display_name) self.session.add(new_suspect) self.save() return new_suspect

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43.571429

14.571429

def sample_cleanup(data, sample): """ stats, cleanup, and link to samples """ ## get maxlen and depths array from clusters maxlens, depths = get_quick_depths(data, sample) try: depths.max() except ValueError: ## If depths is an empty array max() will raise print(" no clu...

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44.806452

24.989247

def _get_bound_pressure_height(pressure, bound, heights=None, interpolate=True): """Calculate the bounding pressure and height in a layer. Given pressure, optional heights, and a bound, return either the closest pressure/height or interpolated pressure/height. If no heights are provided, a standard atmosph...

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47.735294

24.735294

def delete(self, key): '''Removes the object named by `key` in `service`. Args: key: Key naming the object to remove. ''' key = self._service_key(key) self._service_ops['delete'](key)

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25.375

18.875

def fs_c(self, percent=0.9, N=None): """Get the column factor scores (dimensionality-reduced representation), choosing how many factors to retain, directly or based on the explained variance. 'percent': The minimum variance that the retained factors are required to explain (default: 90% = 0.9) 'N': T...

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43.925926

18.111111

def dispatch(self,request,*args,**kwargs): ''' Handle the session data passed by the prior view. ''' lessonSession = request.session.get(PRIVATELESSON_VALIDATION_STR,{}) try: self.lesson = PrivateLessonEvent.objects.get(id=lessonSession.get('lesson')) except...

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46.55

31.15

def wrap (text, width, **kwargs): """Adjust lines of text to be not longer than width. The text will be returned unmodified if width <= 0. See textwrap.wrap() for a list of supported kwargs. Returns text with lines no longer than given width.""" if width <= 0 or not text: return text ret...

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40.583333

9.666667

def twovec(axdef, indexa, plndef, indexp): """ Find the transformation to the right-handed frame having a given vector as a specified axis and having a second given vector lying in a specified coordinate plane. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/twovec_c.html :param axdef:...

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39.961538

13.423077

def load_grid(self, alpha): '''Load grid and calculate alpha values from the coverage/2.5. ''' grid = CRGrid.crt_grid(self.dirs[0] + '/grid/elem.dat', self.dirs[0] + '/grid/elec.dat') self.plotman = CRPlot.plotManager(grid=grid) name = self.dirs[0]...

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43.111111

18.666667

def post(hosts=None, services=None, check_existance=True, create_services=True, create_hosts=False): """ Puts a list of hosts into local instance of nagios checkresults Arguments: hosts -- list of dicts, like one obtained from get_checkresults services -- list of dicts, like...

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39.794872

26.923077

def matches(self, spec): """ Matches a specification against the current Plot. """ if callable(spec) and not isinstance(spec, type): return spec(self) elif isinstance(spec, type): return isinstance(self, spec) else: raise ValueError("Matching specs have to be ...

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42.875

20.875

def get_best_gain(mapping, candidate_mappings, weight_dict, instance_len, cur_match_num): """ Hill-climbing method to return the best gain swap/move can get Arguments: mapping: current node mapping candidate_mappings: the candidates mapping list weight_dict: the weight dictionary instance_le...

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43

16.212121

def tell(self): """Return the current position in the stream (ignoring bit position) :returns: int for the position in the stream """ res = self._stream.tell() if len(self._bits) > 0: res -= 1 return res

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26.3

15.8

def df_query(self, query, with_labels=False): """ Run a :mod:`sqlalchemy` query and return result as a :class:`pandas.DataFrame` Args: query (sqlalchemy.orm.query.Query): query object, usually generated by :func:`session.query()` in an :class:`sqlalchemy.orm.session...

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44.703704

33.444444

def specific_gains(string): """Convert string with gains of individual amplification elements to dict""" if not string: return {} gains = {} for gain in string.split(','): amp_name, value = gain.split('=') gains[amp_name.strip()] = float(value.strip()) return gains

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30.1

16.9

def load_file(self, input_file): """ Loads data array from file (result of this converter) Tries to import, load and replace files' data. It will overwirte previously added items with #add_file or #load_file. :param input_file :type str or unicode """ pyimg = im...

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37.5

18.5

def strip_seq_cntrl(self, idx): """strip(2 byte) wlan.seq(12 bit) and wlan.fram(4 bit) number information. :seq_cntrl: ctypes.Structure :return: int sequence number :return: int fragment number """ seq_cntrl = struct.unpack('H', self._packe...

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33.076923

10.692308

def best_other_class(logits, exclude): """Returns the index of the largest logit, ignoring the class that is passed as `exclude`.""" other_logits = logits - onehot_like(logits, exclude, value=np.inf) return np.argmax(other_logits)

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51.6

7.6

def _general_multithread(func): """ return the general multithreading function using func """ def multithread(templates, stream, *args, **kwargs): with pool_boy(ThreadPool, len(stream), **kwargs) as pool: return _pool_normxcorr(templates, stream, pool=pool, func=func) return multithrea...

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39.25

22.875

def create_objects_for_type(self, raw_objects, o_type): """Generic function to create objects regarding the o_type This function create real Alignak objects from the raw data got from the configuration. :param raw_objects: Raw objects :type raw_objects: dict :param o_type: the ...

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36.526316

17.289474

def reset_params(self): """(Re)set all parameters.""" units = [N_FEATURES] units += [self.hidden_units] * self.num_hidden units += [N_CLASSES] sequence = [] for u0, u1 in zip(units, units[1:]): sequence.append(nn.Linear(u0, u1)) sequence.append(se...

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32.571429

13.928571

def has_throttled(self): """ Check whether any of the CPU cores monitored by this instance has throttled since this instance was created. @return a boolean value """ for file, value in self.cpu_throttle_count.items(): try: new_value = int(util....

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38.5

15.071429

def angle_to_cartesian(lon, lat): """Convert spherical coordinates to cartesian unit vectors.""" theta = np.array(np.pi / 2. - lat) return np.vstack((np.sin(theta) * np.cos(lon), np.sin(theta) * np.sin(lon), np.cos(theta))).T

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46

5

def visit_Identifier(self, node): """Mangle names.""" if not self._is_mangle_candidate(node): return name = node.value symbol = node.scope.resolve(node.value) if symbol is None: return mangled = symbol.scope.mangled.get(name) if mangled is ...

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32

10.818182

def forward(self, inputs, begin_state): # pylint: disable=arguments-differ """Implement forward computation. Parameters ----------- inputs : NDArray input tensor with shape `(sequence_length, batch_size)` when `layout` is "TNC". begin_state : list ...

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def _load_db(): """Deserializes the script database from JSON.""" from os import path from pyci.utility import get_json global datapath, db datapath = path.abspath(path.expanduser(settings.datafile)) vms("Deserializing DB from {}".format(datapath)) db = get_json(datapath, {"installed": [], "...

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def nickmask(prefix: str, kwargs: Dict[str, Any]) -> None: """ store nick, user, host in kwargs if prefix is correct format """ if "!" in prefix and "@" in prefix: # From a user kwargs["nick"], remainder = prefix.split("!", 1) kwargs["user"], kwargs["host"] = remainder.split("@", 1) ...

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def predict_step(F, covX, filt): """Predictive step of Kalman filter. Parameters ---------- F: (dx, dx) numpy array Mean of X_t | X_{t-1} is F * X_{t-1} covX: (dx, dx) numpy array covariance of X_t | X_{t-1} filt: MeanAndCov object filtering distribution at time t-1 ...

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def color_features(in_objectinfo, deredden=True, custom_bandpasses=None, dust_timeout=10.0): '''Stellar colors and dereddened stellar colors using 2MASS DUST API: http://irsa.ipac.caltech.edu/applications/DUST/docs/dustProgramInterface.html Paramete...

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def get_parameter_infos(config_hpp): """Parse config header file. Parameters ---------- config_hpp : string Path to the config header file. Returns ------- infos : tuple Tuple with names and content of sections. """ is_inparameter = False parameter_group = None ...

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def autoconf(self): """Implements Munin Plugin Auto-Configuration Option. @return: True if plugin can be auto-configured, False otherwise. """ fpminfo = PHPfpmInfo(self._host, self._port, self._user, self._password, self._monpath,...

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def grant_symlink_privilege(who, machine=''): """ Grant the 'create symlink' privilege to who. Based on http://support.microsoft.com/kb/132958 """ flags = security.POLICY_CREATE_ACCOUNT | security.POLICY_LOOKUP_NAMES policy = OpenPolicy(machine, flags) return policy

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def make_update(cls, table, set_query, where=None): """ Make UPDATE query. :param str table: Table name of executing the query. :param str set_query: SET part of the UPDATE query. :param str where: Add a WHERE clause to execute query, if the value is not ...

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def protected_adminview_factory(base_class): """Factory for creating protected admin view classes. The factory will ensure that the admin view will check if a user is authenticated and has the necessary permissions (as defined by the permission factory). The factory creates a new class using the pr...

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def index(request, template_name="index.html"): """\ The index view, which basically just displays a button and increments a counter. """ if request.GET.get('ic-request'): counter, created = Counter.objects.get_or_create(pk=1) counter.value += 1 counter.save() else: ...

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def write_dataframe(rows, encoding=ENCODING, dialect=DIALECT, **kwargs): """Dump ``rows`` to string buffer and load with ``pandas.read_csv()`` using ``kwargs``.""" global pandas if pandas is None: # pragma: no cover import pandas with contextlib.closing(CsvBuffer()) as fd: write_csv(fd,...

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def read(self, vals): """Read values. Args: vals (list): list of strings representing values """ i = 0 count = int(vals[i]) i += 1 for _ in range(count): obj = DesignCondition() obj.read(vals[i:i + obj.field_count]) ...

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def fetch_exac_constraint(): """Fetch the file with exac constraint scores Returns: exac_lines(iterable(str)) """ file_name = 'fordist_cleaned_exac_r03_march16_z_pli_rec_null_data.txt' url = ('ftp://ftp.broadinstitute.org/pub/ExAC_release/release0.3/functional_gene_constraint' ...

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def visit_ListComp(self, node: ast.ListComp) -> Any: """Compile the list comprehension as a function and call it.""" result = self._execute_comprehension(node=node) for generator in node.generators: self.visit(generator.iter) self.recomputed_values[node] = result re...

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def convert_images(image_list, image_format="png", timeout=20): """Convert images from list of images to given format, if needed. Figure out the types of the images that were extracted from the tarball and determine how to convert them into PNG. :param: image_list ([string, string, ...]): the list of ...

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def _handle_redirect(self, r, **kwargs): """Reset auth_attempted on redirects.""" if r.is_redirect: self._thread_local.auth_attempted = False

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41.5

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def _save_multi(data, file_name, sep=";"): """convenience function for storing data column-wise in a csv-file.""" logger.debug("saving multi") with open(file_name, "w", newline='') as f: logger.debug(f"{file_name} opened") writer = csv.writer(f, delimiter=sep) try: writer...

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def NamedDict(name, fields, description=None, type_attributes=DEFAULT_TYPE_ATTRIBUTES): ''' A :py:class:`Dict` with a name allowing it to be referenced by that name. ''' check_user_facing_fields_dict(fields, 'NamedDict named "{}"'.format(name)) class _NamedDict(_ConfigComposite): def __init...

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def classify(self, text): """ Chooses the highest scoring category for a sample of text :param text: sample text to classify :type text: str :return: the "winning" category :rtype: str """ score = self.score(text) if not score: return ...

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def cmd_search(*args): """ Arguments: <keyword1> [<keyword2> [<keyword3> [...]]] List the documents containing the keywords. Syntax is the same than with the search field in Paperwork-gui. Search "" (empty string) to get all the documents. Example: 'label:contrat AND paperwork' Possible ...

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def write(self, filename, compress=True, catalog_format="QUAKEML"): """ Write the tribe to a file using tar archive formatting. :type filename: str :param filename: Filename to write to, if it exists it will be appended to. :type compress: bool :param compres...

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def to_json(self): """Serialize an object to JSON based on its "properties" class attribute. :rtype: string""" j = {} for p in self.properties: try: v = getattr(self, p) except AttributeError: continue if v is ...

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def get_assessments_metadata(self): """Gets the metadata for the assessments. return: (osid.Metadata) - metadata for the assessments *compliance: mandatory -- This method must be implemented.* """ # Implemented from template for osid.learning.ActivityForm.get_assets_metadata_te...

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def observe(matcher): """ Internal decorator to trigger operator hooks before/after matcher execution. """ @functools.wraps(matcher) def observer(self, subject, *expected, **kw): # Trigger before hook, if present if hasattr(self, 'before'): ...

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def SetName(obj, name): """A compatibility wrapper for setting object's name. See documentation for `GetName` for more information. Args: obj: A type or function object to set the name for. name: A name to set. """ # Not doing type assertion on obj, since it may be a mock object used # in tests. ...

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24.823529

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def add_triples(self, ontol): """ Adds triples to an ontology object. Currently assumes gocam/lego-style """ rg = self.rdfgraph g = ontol.get_graph() typemap = {} inds = rg.subjects(RDF.type, OWL.NamedIndividual) for s in inds: for (s,...

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def write_satellites(self, *args): """ Write a satellite constellation record:: writer.write_satellites(datetime.time(12, 34, 56), [1, 2, 5, 22]) # -> F12345601020522 :param time: UTC time of the satellite constellation record (default: :meth:`~datetime.date...

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29

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def _del_process(self, dwProcessId): """ Private method to remove a process object from the snapshot. @type dwProcessId: int @param dwProcessId: Global process ID. """ try: aProcess = self.__processDict[dwProcessId] del self.__processDict[dwProce...

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def _run_play(self, play): ''' run a list of tasks for a given pattern, in order ''' self.callbacks.on_play_start(play.name) # if no hosts matches this play, drop out if not self.inventory.list_hosts(play.hosts): self.callbacks.on_no_hosts_matched() return True ...

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def validate(self, value, messages=None, prefix=None): """validate(value[, messages[, prefix]]) -> True | False Validates the given value according to this PrimitiveType definition. Validation error messages are appended to an optional messages array, each with the optional message pre...

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def get_action(self, parent, undo_stack: QUndoStack, sel_range, protocol: ProtocolAnalyzer, view: int): """ :type parent: QTableView :type undo_stack: QUndoStack :type protocol_analyzers: list of ProtocolAnalyzer """ min_row, max_row, start, end = sel_range if min...

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def rank(matrix, atol=1e-13, rtol=0): """ Estimate the rank, i.e., the dimension of the column space, of a matrix. The algorithm used by this function is based on the singular value decomposition of `stoichiometry_matrix`. Parameters ---------- matrix : ndarray The matrix should be...

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30.533333

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def create_status(self, state, target_url=github.GithubObject.NotSet, description=github.GithubObject.NotSet, context=github.GithubObject.NotSet): """ :calls: `POST /repos/:owner/:repo/statuses/:sha <http://developer.github.com/v3/repos/statuses>`_ :param state: string :param target_url:...

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54.107143

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def tofile(path=""): """Instead of printing to a screen print to a file :Example: with pout.tofile("/path/to/file.txt"): # all pout calls in this with block will print to file.txt pout.v("a string") pout.b() pout.h() :param path: str, a path to the f...

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def resolve(self, *pargs, **kwargs): """Resolve the promise.""" self._cached = (pargs, kwargs) self._try_then()

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33

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def _map_or_starmap(function, iterable, args, kwargs, map_or_starmap): """ Shared function between parmap.map and parmap.starmap. Refer to those functions for details. """ arg_newarg = (("parallel", "pm_parallel"), ("chunksize", "pm_chunksize"), ("pool", "pm_pool"), ("processes", "...

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def create_float(self, value: float) -> Float: """ Creates a new :class:`ConstantFloat`, adding it to the pool and returning it. :param value: The value of the new float. """ self.append((4, value)) return self.get(self.raw_count - 1)

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def register(self, resource_name, dependent=None): ''' Register the given dependent as depending on the "resource" named by resource_name. ''' if dependent is None: # Give a partial usable as a decorator return partial(self.register, resource_name) ...

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def get_airport_metars(self, iata, page=1, limit=100): """Retrieve the metar data at the current time Given the IATA code of an airport, this method returns the metar information. Args: iata (str): The IATA code for an airport, e.g. HYD page (int): Optional page number;...

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35.92

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def apply_chromatic_adaptation_on_color(color, targ_illum, adaptation='bradford'): """ Convenience function to apply an adaptation directly to a Color object. """ xyz_x = color.xyz_x xyz_y = color.xyz_y xyz_z = color.xyz_z orig_illum = color.illuminant targ_illum = targ_illum.lower() ...

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def split(text: str) -> List[str]: """Split a text into a list of tokens. :param text: the text to split :return: tokens """ return [word for word in SEPARATOR.split(text) if word.strip(' \t')]

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def mdot_t(self,ifig=None,lims=[7.4,2.6,-8.5,-4.5],label=None,colour=None,s2ms=False, dashes=None): """ Plot mass loss history as a function of log-time-left Parameters ---------- ifig : integer or string Figure label, if None the current figure is use...

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def on_lxml_loads(self, lxml, config, content, **kwargs): """ The `lxml <https://pypi.org/project/lxml/>`_ loads method. :param module lxml: The ``lxml`` module :param class config: The loading config class :param str content: The content to deserialize :param str encoding: The ...

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def list(self, all_pages=False, **kwargs): """Return a list of objects. If one or more filters are provided through keyword arguments, filter the results accordingly. If no filters are provided, return all results. =====API DOCS===== Retrieve a list of objects. :param...

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def from_folder(cls, path:PathOrStr, train:PathOrStr='train', valid:PathOrStr='valid', valid_pct=None, classes:Collection=None, **kwargs:Any)->'ImageDataBunch': "Create from imagenet style dataset in `path` with `train`,`valid`,`test` subfolders (or provide `valid_pct`)." path=Path(p...

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def pop(self): ''' Pop an event from the queue. The event in the queue with higher priority is popped before ones in lower priority. If there are multiple queues with the same priority, events are taken in turn from each queue. May return some queueEvents indicating that some of the queu...

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def _handle_loads(cls, handler, content, validate=False, **kwargs): """ Loads caller, used by partial method for dynamic handler assignments. :param object handler: The loads handler :param str content: The content to load from :param bool validate: Performs content validation before loading, d...

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def _add_numeric_operations(cls): """ Add the operations to the cls; evaluate the doc strings again """ axis_descr, name, name2 = _doc_parms(cls) cls.any = _make_logical_function( cls, 'any', name, name2, axis_descr, _any_desc, nanops.nanany, _any_see_al...

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def print_object_attributes( thing, heading=None, file=None ): ''' Print the attribute names in thing vertically ''' if heading : print( '==', heading, '==', file=file ) print( '\n'.join( object_attributes( thing ) ), file=file )

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def update(self, dt=None): """Simulate the model for a given time interval. Parameters ---------- dt : Optional[float] The time step to simulate, if None, the default built-in time step is used. """ # EMELI passes dt = -1 so we need to handle that...

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def download(self, force=False): """ Download file containing this package. :param force: Force download even if it seems file already exists :return: Full path with filename of downloaded package file. """ exists, dest_path = self._downloader.cache.exists_packed(package=...

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def deposit(self, asset, amount, private_key): """ This function is a wrapper function around the create and execute deposit functions to help make this processes simpler for the end user by combining these requests in 1 step. Execution of this function is as follows:: depos...

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def ValidateAndReturnIntValue(value, allowed_values, default, allow_empty, column_name=None, problems=None): """ Validates a value to be a valid integer in the list of allowed values: - if no integer value adds InvalidValue error and returns the default value - if integer but n...

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def get_gene_seqs(database_path, gene): """ This function takes the database path and a gene name as inputs and returns the gene sequence contained in the file given by the gene name """ gene_path = database_path + "/" + gene + ".fsa" gene_seq = "" # Open fasta file with open(gene_path)...

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def __deprecate_defaults( self, new_func: str, bg_blend: Any, alignment: Any = ..., clear: Any = ..., ) -> None: """Return the parameters needed to recreate the current default state. """ if not __debug__: return fg = self.default_...

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def _format_name_map(self, lon, lat): ''' Return the name of the map in the good format ''' if self.ppd in [4, 16, 64, 128]: lolaname = '_'.join(['LDEM', str(self.ppd)]) elif self.ppd in [512]: lolaname = '_'.join( ['LDEM', str(self.ppd), lat[0], lat[1], ...

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def collision_integral_Neufeld_Janzen_Aziz(Tstar, l=1, s=1): r'''Calculates Lennard-Jones collision integral for any of 16 values of (l,j) for the wide range of 0.3 < Tstar < 100. Values are accurate to 0.1 % of actual values, but the calculation of actual values is computationally intensive and so thes...

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def linear(self, limits=None, k=5): """Returns an ndarray of linear breaks.""" start, stop = limits or (self.minval, self.maxval) return np.linspace(start, stop, k)

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def string_to_timestruct(input_string): # type: (bytes) -> time.struct_time ''' A cacheable function to take an input string and decode it into a time.struct_time from the time module. If the string cannot be decoded because of an illegal value, then the all-zero time.struct_time will be return...

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def watchpoint_info(self, handle=0, index=-1): """Returns information about the specified watchpoint. Note: Either ``handle`` or ``index`` can be specified. If the ``index`` is not provided, the ``handle`` must be set, and vice-versa. If both ``index`` and ``handle`` are...

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def pop_all(self): """ NON-BLOCKING POP ALL IN QUEUE, IF ANY """ with self.lock: if self.please_stop: return [THREAD_STOP] if self.db.status.end == self.start: return [] output = [] for i in range(self.start...

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def letter_score(letter): """Returns the Scrabble score of a letter. Args: letter: a single character string Raises: TypeError if a non-Scrabble character is supplied """ score_map = { 1: ["a", "e", "i", "o", "u", "l", "n", "r", "s", "t"], 2: ["d", "g"], 3:...

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def normalize_cpp_function(self, function, line): """Normalizes a single cpp frame with a function""" # Drop member function cv/ref qualifiers like const, const&, &, and && for ref in ('const', 'const&', '&&', '&'): if function.endswith(ref): function = function[:-len...

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def unwrap(klass, value): """Unpack a Value into an augmented python type (selected from the 'value' field) """ assert isinstance(value, Value), value V = value.value try: T = klass.typeMap[type(V)] except KeyError: raise ValueError("Can't unwrap v...

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def _check_output(self, command): """Wrap the call to subprocess.check_output() to raise customized exceptions and always return strings.""" try: if sys.version_info[0] > 2: return check_output(self.base_command + command, stderr=STDOUT).decode('utf8') else: ...

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def explain(self, *args, **kwargs): '''Return a string that describes how these args are interpreted''' args = self.get(*args, **kwargs) results = ['%s = %s' % (name, value) for name, value in args.required] results.extend(['%s = %s (overridden)' % ( name, value) for name, va...

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def loads(s, single=False, version=_default_version, strict=False, errors='warn'): """ Deserialize SimpleMRS string representations Args: s (str): a SimpleMRS string single (bool): if `True`, only return the first Xmrs object Returns: a generator of Xmrs objects (unles...

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def _aggregate(self, instanceId, container, value, subKey = None): """Performs stat aggregation.""" # Get the aggregator. if instanceId not in self._aggregators: self._aggregators[instanceId] = _Stats.getAggregator(instanceId, self.__name) aggregator = self._aggregators[instanceId] # If we a...

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def acquire(self, **kwargs): """ Copy the file and return its path Returns ------- str or None The path of the file in BatchUp's temporary directory or None if the copy failed. """ if self.source_path is None: source_path = kwa...

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def remove_room_alias(self, room_alias): """Remove mapping of an alias Args: room_alias(str): The alias to be removed. Returns: bool: True if the alias is removed, False otherwise. """ try: self.api.remove_room_alias(room_alias) r...

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def find_matches(strings, words, length_hoped): """ Used by default property excerpt """ lower_words = [w.lower() for w in words] def has_match(string): """ Do any of the words match within the string """ lower_string = string.lower() for test_word in lower_w...

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35.4

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